Pregenerated sensors for SMIM12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042380Ensembl transcript IDs: ENSMUST00000142029.2
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | AGGCACGGAGAGAGCCCACTGAGCAGACGCAGTCTTCCTCATTGCTaGCCCCTACTGCTGCCGCTCTGCAGCCATACAGGACCAGCCAGT | + |
Preference number: 1 (lower is better) Translates to: RHGESPLSRRSLPHC*PLLLPLCSHTGPAS Trigger: ACTGGCTGGTCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCTCAGTGGGCTCTCTCCGTGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR TCA 90 bp | TCCCAGGTAAGATCAGAAGCCTGTCCAGGCACGGAGAGAGCCCACTaGGCAGACGCAGTCTTCCTCATTGCTGGCCCCTACTGCTGCCGC | + |
Preference number: 1 (lower is better) Translates to: SQVRSEACPGTERAH*ADAVFLIAGPYCCR Trigger: GCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCTCAGTGGGCTCTCTCCGTGCCTGGACAGGCTTCTGATCTTACCTGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR GCA 90 bp | AGCAGACGCAGTCTTCCTCATTGCTGGCCCCTACTGCTGCCGCTCTaGAGCCATACAGGACCAGCCAGTACACGAGTGGCTGTGGGTGCT | + |
Preference number: 1 (lower is better) Translates to: SRRSLPHCWPLLLPL*SHTGPASTRVAVGA Trigger: AGCACCCACAGCCACTCGTGTACTGGCTGGTCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR-3UTR CCA 90 bp | AGTCTTCCTCATTGCTGGCCCCTACTGCTGCCGCTCTGCAGCCATACAGGACCACATGGCGGCAGGACATaGCATATCCCTGTGCACCAC | + |
Preference number: 2 (lower is better) Translates to: SLPHCWPLLLPLCSHTGPHGGRT*HIPVHH Trigger: GTGGTGCACAGGGATATGCCATGTCCTGCCGCCATG...TGGTCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR-3UTR CCA 90 bp | TCCCCACAAGAGAAGCATGCTTTCCTTCCCCTGAGAATCCCACGCCTGAGCCAGAGTCTTCCTCATTGCTaGCCCCTACTGCTGCCGCTC | + |
Preference number: 2 (lower is better) Translates to: SPQEKHAFLPLRIPRLSQSLPHC*PLLLPL Trigger: GAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACT...CTGGCTCAGGCGTGGGATTCTCAGGGGAAGGAAAGCATGCTTCTCTTGTGGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR-3UTR GCA 90 bp | GCCTCATCAAGGGAGCCAGGGACATTCCTGAATTCTTTTCAGTGCAAAAACGAGACGAGTGGCTGTGGGTaGTCAGGGGGCCGGAGTGAG | + |
Preference number: 2 (lower is better) Translates to: ASSREPGTFLNSFQCKNETSGCG*SGGRSE Trigger: CTCACTCCGGCCCCCTGAGCACCCACAGCCACTCGT...CTCGTTTTTGCACTGAAAAGAATTCAGGAATGTCCCTGGCTCCCTTGATGAGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR-3UTR CCA 90 bp | GCCTCATCAAGGGAGCCAGGGACATTCCTGAATTCTTTTCAGTGCAAAAACGAGGTACACGAGTGGCTGTaGGTGCTCAGGGGGCCGGAG | + |
Preference number: 2 (lower is better) Translates to: ASSREPGTFLNSFQCKNEVHEWL*VLRGPE Trigger: CTCCGGCCCCCTGAGCACCCACAGCCACTCGTGTAC...CTCGTTTTTGCACTGAAAAGAATTCAGGAATGTCCCTGGCTCCCTTGATGAGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR-3UTR TCA 90 bp | GGGAAGAATGCACACAGGAAAATAAGAAAGCCTCATCAAGGGAGCCAGGGACATCTCAGGGGGCCGGAGTaGGCAGCAAAGCAAATCAGA | + |
Preference number: 2 (lower is better) Translates to: GKNAHRKIRKPHQGSQGHLRGPE*AAKQIR Trigger: TCTGATTTGCTTTGCTGCTCACTCCGGCCCCCTGAG...ATGTCCCTGGCTCCCTTGATGAGGCTTTCTTATTTTCCTGTGTGCATTCTTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR-3UTR GCA 90 bp | CAGGAAAATAAGAAAGCCTCATCAAGGGAGCCAGGGACATTCCTGAATTCTTTTCATGGCATATCCCTGTaGACCACAGGGACCTGGGCC | + |
Preference number: 2 (lower is better) Translates to: QENKKASSREPGTFLNSFHGISL*TTGTWA Trigger: GGCCCAGGTCCCTGTGGTGCACAGGGATATGCCATG...AAAAGAATTCAGGAATGTCCCTGGCTCCCTTGATGAGGCTTTCTTATTTTCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR GCA 72 bp | GCAGACGCAGTCTTCCTCATTGCTGGCCCCTACTGCTaGCGCTCTGCAGCCATACAGGACCAGCCAGTACAC | + |
Preference number: 3 (lower is better) Translates to: ADAVFLIAGPYC*RSAAIQDQPVH Trigger: GTGTACTGGCTGGTCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR CCA 72 bp | TGTGTTCTGAAGCTGGGTCGACATGGCGGCAGGACATaGCATATCCCTGTGCACCACAGGGACCTGGGCCCT | + |
Preference number: 3 (lower is better) Translates to: CVLKLGRHGGRT*HIPVHHRDLGP Trigger: AGGGCCCAGGTCCCTGTGGTGCACAGGGATATGCCATGTCCTGCCGCCATGTCGACCCAGCTTCAGAACACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR CCA 72 bp | GAGAGCCCACTGAGCAGACGCAGTCTTCCTCATTGCTaGCCCCTACTGCTGCCGCTCTGCAGCCATACAGGA | + |
Preference number: 3 (lower is better) Translates to: ESPLSRRSLPHC*PLLLPLCSHTG Trigger: TCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCTCAGTGGGCTCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR GCA 72 bp | CCATACAGGACCAGCCAGTACACGAGTGGCTGTGGGTaGTCAGGGGGCCGGAGTGAGCAGCAAAGCAAATCA | + |
Preference number: 3 (lower is better) Translates to: PYRTSQYTSGCG*SGGRSEQQSKS Trigger: TGATTTGCTTTGCTGCTCACTCCGGCCCCCTGAGCACCCACAGCCACTCGTGTACTGGCTGGTCCTGTATGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR GCA 72 bp | AGTCTTCCTCATTGCTGGCCCCTACTGCTGCCGCTCTaGAGCCATACAGGACCAGCCAGTACACGAGTGGCT | + |
Preference number: 3 (lower is better) Translates to: SLPHCWPLLLPL*SHTGPASTRVA Trigger: AGCCACTCGTGTACTGGCTGGTCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR TCA 72 bp | GTGCCAGGTGCCACTTTAATTGAGTCCCCACTCCAGTaGGGAAGGGTGGAAGACAGTGATTATTTCCAGGCT | + |
Preference number: 3 (lower is better) Translates to: VPGATLIESPLQ*GRVEDSDYFQA Trigger: AGCCTGGAAATAATCACTGTCTTCCACCCTTCCTCACTGGAGTGGGGACTCAATTAAAGTGGCACCTGGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR TCA 72 bp | ATAAGAAAGCCTCATCAAGGGAGCCAGGGACATTCCTaGATTCTTTTCAGTGCAAAAACGAGAACTAGACAT | + |
Preference number: 3 (lower is better) Translates to: IRKPHQGSQGHS*ILFSAKTRTRH Trigger: ATGTCTAGTTCTCGTTTTTGCACTGAAAAGAATTCAGGAATGTCCCTGGCTCCCTTGATGAGGCTTTCTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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CDS-3UTR GCA 90 bp | TGCAGCCATACAGGACCAGCCAGTACACGAGTGGCTGTGGGTGCTCAGGGGGCCCTCGGCGCTCCAGGATaGTCTTCTCCTCCTCCACAG | + |
Preference number: 4 (lower is better) Translates to: CSHTGPASTRVAVGAQGALGAPG*SSPPPQ Trigger: CTGTGGAGGAGGAGAAGAGCATCCTGGAGCGCCGAG...GGCCCCCTGAGCACCCACAGCCACTCGTGTACTGGCTGGTCCTGTATGGCTGCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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3UTR CAA 72 bp | CGGAGAGAGCCCACTGAGCAGACGCAGTCTTCCTCATaGCTGGCCCCTACTGCTGCCGCTCTGCAGCCATAC | + |
Preference number: 4 (lower is better) Translates to: RREPTEQTQSSS*LAPTAAALQPY Trigger: GTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCTCAGTGGGCTCTCTCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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CDS-3UTR TCA 90 bp | GCACGGAGAGAGCCCACTGAGCAGACGCAGTCTTCCTCATTGCTGGCCCCTACTTTAAGGCTCACCACCTaGGTGTGGTCCTTGCCTAGC | + |
Preference number: 4 (lower is better) Translates to: ARREPTEQTQSSSLLAPTLRLTT*VWSLPS Trigger: GCTAGGCAAGGACCACACTCAGGTGGTGAGCCTTAA...AGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCTCAGTGGGCTCTCTCCGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |
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CDS-3UTR GCA 90 bp | TCCCCACAAGAGAAGCATGCTTTCCTTCCCCTGAGAATCCCACGCCTGAGCCAGCCTGAGTGTGGTCCTTaGCTAGCATCTCATCCAGCT | + |
Preference number: 4 (lower is better) Translates to: SPQEKHAFLPLRIPRLSQPECGP*LASHPA Trigger: AGCTGGATGAGATGCTAGGCAAGGACCACACTCAGG...CTGGCTCAGGCGTGGGATTCTCAGGGGAAGGAAAGCATGCTTCTCTTGTGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142029.2 |