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Pregenerated sensors for SMIM12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042380

Ensembl transcript IDs: ENSMUST00000142029.2

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGCACGGAGAGAGCCCACTGAGCAGACGCAGTCTTCCTCATTGCTaGCCCCTACTGCTGCCGCTCTGCAGCCATACAGGACCAGCCAGT +
Preference number: 1 (lower is better)
Translates to: RHGESPLSRRSLPHC*PLLLPLCSHTGPAS
Trigger: ACTGGCTGGTCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCTCAGTGGGCTCTCTCCGTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR TCA 90 bp TCCCAGGTAAGATCAGAAGCCTGTCCAGGCACGGAGAGAGCCCACTaGGCAGACGCAGTCTTCCTCATTGCTGGCCCCTACTGCTGCCGC +
Preference number: 1 (lower is better)
Translates to: SQVRSEACPGTERAH*ADAVFLIAGPYCCR
Trigger: GCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCTCAGTGGGCTCTCTCCGTGCCTGGACAGGCTTCTGATCTTACCTGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR GCA 90 bp AGCAGACGCAGTCTTCCTCATTGCTGGCCCCTACTGCTGCCGCTCTaGAGCCATACAGGACCAGCCAGTACACGAGTGGCTGTGGGTGCT +
Preference number: 1 (lower is better)
Translates to: SRRSLPHCWPLLLPL*SHTGPASTRVAVGA
Trigger: AGCACCCACAGCCACTCGTGTACTGGCTGGTCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR-3UTR CCA 90 bp AGTCTTCCTCATTGCTGGCCCCTACTGCTGCCGCTCTGCAGCCATACAGGACCACATGGCGGCAGGACATaGCATATCCCTGTGCACCAC +
Preference number: 2 (lower is better)
Translates to: SLPHCWPLLLPLCSHTGPHGGRT*HIPVHH
Trigger: GTGGTGCACAGGGATATGCCATGTCCTGCCGCCATG...TGGTCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR-3UTR CCA 90 bp TCCCCACAAGAGAAGCATGCTTTCCTTCCCCTGAGAATCCCACGCCTGAGCCAGAGTCTTCCTCATTGCTaGCCCCTACTGCTGCCGCTC +
Preference number: 2 (lower is better)
Translates to: SPQEKHAFLPLRIPRLSQSLPHC*PLLLPL
Trigger: GAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACT...CTGGCTCAGGCGTGGGATTCTCAGGGGAAGGAAAGCATGCTTCTCTTGTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR-3UTR GCA 90 bp GCCTCATCAAGGGAGCCAGGGACATTCCTGAATTCTTTTCAGTGCAAAAACGAGACGAGTGGCTGTGGGTaGTCAGGGGGCCGGAGTGAG +
Preference number: 2 (lower is better)
Translates to: ASSREPGTFLNSFQCKNETSGCG*SGGRSE
Trigger: CTCACTCCGGCCCCCTGAGCACCCACAGCCACTCGT...CTCGTTTTTGCACTGAAAAGAATTCAGGAATGTCCCTGGCTCCCTTGATGAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR-3UTR CCA 90 bp GCCTCATCAAGGGAGCCAGGGACATTCCTGAATTCTTTTCAGTGCAAAAACGAGGTACACGAGTGGCTGTaGGTGCTCAGGGGGCCGGAG +
Preference number: 2 (lower is better)
Translates to: ASSREPGTFLNSFQCKNEVHEWL*VLRGPE
Trigger: CTCCGGCCCCCTGAGCACCCACAGCCACTCGTGTAC...CTCGTTTTTGCACTGAAAAGAATTCAGGAATGTCCCTGGCTCCCTTGATGAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR-3UTR TCA 90 bp GGGAAGAATGCACACAGGAAAATAAGAAAGCCTCATCAAGGGAGCCAGGGACATCTCAGGGGGCCGGAGTaGGCAGCAAAGCAAATCAGA +
Preference number: 2 (lower is better)
Translates to: GKNAHRKIRKPHQGSQGHLRGPE*AAKQIR
Trigger: TCTGATTTGCTTTGCTGCTCACTCCGGCCCCCTGAG...ATGTCCCTGGCTCCCTTGATGAGGCTTTCTTATTTTCCTGTGTGCATTCTTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR-3UTR GCA 90 bp CAGGAAAATAAGAAAGCCTCATCAAGGGAGCCAGGGACATTCCTGAATTCTTTTCATGGCATATCCCTGTaGACCACAGGGACCTGGGCC +
Preference number: 2 (lower is better)
Translates to: QENKKASSREPGTFLNSFHGISL*TTGTWA
Trigger: GGCCCAGGTCCCTGTGGTGCACAGGGATATGCCATG...AAAAGAATTCAGGAATGTCCCTGGCTCCCTTGATGAGGCTTTCTTATTTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR GCA 72 bp GCAGACGCAGTCTTCCTCATTGCTGGCCCCTACTGCTaGCGCTCTGCAGCCATACAGGACCAGCCAGTACAC +
Preference number: 3 (lower is better)
Translates to: ADAVFLIAGPYC*RSAAIQDQPVH
Trigger: GTGTACTGGCTGGTCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR CCA 72 bp TGTGTTCTGAAGCTGGGTCGACATGGCGGCAGGACATaGCATATCCCTGTGCACCACAGGGACCTGGGCCCT +
Preference number: 3 (lower is better)
Translates to: CVLKLGRHGGRT*HIPVHHRDLGP
Trigger: AGGGCCCAGGTCCCTGTGGTGCACAGGGATATGCCATGTCCTGCCGCCATGTCGACCCAGCTTCAGAACACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR CCA 72 bp GAGAGCCCACTGAGCAGACGCAGTCTTCCTCATTGCTaGCCCCTACTGCTGCCGCTCTGCAGCCATACAGGA +
Preference number: 3 (lower is better)
Translates to: ESPLSRRSLPHC*PLLLPLCSHTG
Trigger: TCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCTCAGTGGGCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR GCA 72 bp CCATACAGGACCAGCCAGTACACGAGTGGCTGTGGGTaGTCAGGGGGCCGGAGTGAGCAGCAAAGCAAATCA +
Preference number: 3 (lower is better)
Translates to: PYRTSQYTSGCG*SGGRSEQQSKS
Trigger: TGATTTGCTTTGCTGCTCACTCCGGCCCCCTGAGCACCCACAGCCACTCGTGTACTGGCTGGTCCTGTATGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR GCA 72 bp AGTCTTCCTCATTGCTGGCCCCTACTGCTGCCGCTCTaGAGCCATACAGGACCAGCCAGTACACGAGTGGCT +
Preference number: 3 (lower is better)
Translates to: SLPHCWPLLLPL*SHTGPASTRVA
Trigger: AGCCACTCGTGTACTGGCTGGTCCTGTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR TCA 72 bp GTGCCAGGTGCCACTTTAATTGAGTCCCCACTCCAGTaGGGAAGGGTGGAAGACAGTGATTATTTCCAGGCT +
Preference number: 3 (lower is better)
Translates to: VPGATLIESPLQ*GRVEDSDYFQA
Trigger: AGCCTGGAAATAATCACTGTCTTCCACCCTTCCTCACTGGAGTGGGGACTCAATTAAAGTGGCACCTGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR TCA 72 bp ATAAGAAAGCCTCATCAAGGGAGCCAGGGACATTCCTaGATTCTTTTCAGTGCAAAAACGAGAACTAGACAT +
Preference number: 3 (lower is better)
Translates to: IRKPHQGSQGHS*ILFSAKTRTRH
Trigger: ATGTCTAGTTCTCGTTTTTGCACTGAAAAGAATTCAGGAATGTCCCTGGCTCCCTTGATGAGGCTTTCTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
CDS-3UTR GCA 90 bp TGCAGCCATACAGGACCAGCCAGTACACGAGTGGCTGTGGGTGCTCAGGGGGCCCTCGGCGCTCCAGGATaGTCTTCTCCTCCTCCACAG +
Preference number: 4 (lower is better)
Translates to: CSHTGPASTRVAVGAQGALGAPG*SSPPPQ
Trigger: CTGTGGAGGAGGAGAAGAGCATCCTGGAGCGCCGAG...GGCCCCCTGAGCACCCACAGCCACTCGTGTACTGGCTGGTCCTGTATGGCTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
3UTR CAA 72 bp CGGAGAGAGCCCACTGAGCAGACGCAGTCTTCCTCATaGCTGGCCCCTACTGCTGCCGCTCTGCAGCCATAC +
Preference number: 4 (lower is better)
Translates to: RREPTEQTQSSS*LAPTAAALQPY
Trigger: GTATGGCTGCAGAGCGGCAGCAGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCTCAGTGGGCTCTCTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
CDS-3UTR TCA 90 bp GCACGGAGAGAGCCCACTGAGCAGACGCAGTCTTCCTCATTGCTGGCCCCTACTTTAAGGCTCACCACCTaGGTGTGGTCCTTGCCTAGC +
Preference number: 4 (lower is better)
Translates to: ARREPTEQTQSSSLLAPTLRLTT*VWSLPS
Trigger: GCTAGGCAAGGACCACACTCAGGTGGTGAGCCTTAA...AGTAGGGGCCAGCAATGAGGAAGACTGCGTCTGCTCAGTGGGCTCTCTCCGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2
CDS-3UTR GCA 90 bp TCCCCACAAGAGAAGCATGCTTTCCTTCCCCTGAGAATCCCACGCCTGAGCCAGCCTGAGTGTGGTCCTTaGCTAGCATCTCATCCAGCT +
Preference number: 4 (lower is better)
Translates to: SPQEKHAFLPLRIPRLSQPECGP*LASHPA
Trigger: AGCTGGATGAGATGCTAGGCAAGGACCACACTCAGG...CTGGCTCAGGCGTGGGATTCTCAGGGGAAGGAAAGCATGCTTCTCTTGTGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142029.2