RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMIM11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051989

Ensembl transcript IDs: ENSMUST00000063641.11, ENSMUST00000118064.2

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCGCCTCAGACCAAGGATGCAGAGATCTCAGGGCACCACACCCTTaGTTGGGCACTGAAGCCCTCTGGAGAGGTTTTGTTTGCAAAGCC +
Preference number: 1 (lower is better)
Translates to: SASDQGCRDLRAPHP*LGTEALWRGFVCKA
Trigger: GGCTTTGCAAACAAAACCTCTCCAGAGGGCTTCAGTGCCCAACCAAGGGTGTGGTGCCCTGAGATCTCTGCATCCTTGGTCTGAGGCGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR CCA 90 bp CCTCAGACCAAGGATGCAGAGATCTCAGGGCACCACACCCTTGGTTaGGCACTGAAGCCCTCTGGAGAGGTTTTGTTTGCAAAGCCCAGT +
Preference number: 1 (lower is better)
Translates to: PQTKDAEISGHHTLG*ALKPSGEVLFAKPS
Trigger: ACTGGGCTTTGCAAACAAAACCTCTCCAGAGGGCTTCAGTGCCCAACCAAGGGTGTGGTGCCCTGAGATCTCTGCATCCTTGGTCTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR TCA 90 bp CCAAGGATGCAGAGATCTCAGGGCACCACACCCTTGGTTGGGCACTaGAGCCCTCTGGAGAGGTTTTGTTTGCAAAGCCCAGTACCTCTA +
Preference number: 1 (lower is better)
Translates to: PRMQRSQGTTPLVGH*SPLERFCLQSPVPL
Trigger: TAGAGGTACTGGGCTTTGCAAACAAAACCTCTCCAGAGGGCTTCAGTGCCCAACCAAGGGTGTGGTGCCCTGAGATCTCTGCATCCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR GCA 90 bp CAGGTGAGGTTTGGCCAGATGATGAACAGATTGGAAGGGATCATTTaGCAACAGGGAGCCAGACATCATCCTGAAGATAGCAGGGCTCCT +
Preference number: 1 (lower is better)
Translates to: QVRFGQMMNRLEGII*QQGARHHPEDSRAP
Trigger: AGGAGCCCTGCTATCTTCAGGATGATGTCTGGCTCCCTGTTGGCAAATGATCCCTTCCAATCTGTTCATCATCTGGCCAAACCTCACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR CAA 90 bp AGGACTGATACTCTAAATGGTCAGAGCGGGGCTGAGGCTCTGGCTTaGCACCCTGGCTGCAGTGCCCATGTGCCCTCTTGCAGCGCCTCA +
Preference number: 2 (lower is better)
Translates to: RTDTLNGQSGAEALA*HPGCSAHVPSCSAS
Trigger: TGAGGCGCTGCAAGAGGGCACATGGGCACTGCAGCCAGGGTGCAAAGCCAGAGCCTCAGCCCCGCTCTGACCATTTAGAGTATCAGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR CAA 90 bp GCCTCAGACCAAGGATGCAGAGATCTCAGGGCACCACACCCTTGGTaGGGCACTGAAGCCCTCTGGAGAGGTTTTGTTTGCAAAGCCCAG +
Preference number: 2 (lower is better)
Translates to: ASDQGCRDLRAPHPW*GTEALWRGFVCKAQ
Trigger: CTGGGCTTTGCAAACAAAACCTCTCCAGAGGGCTTCAGTGCCCAACCAAGGGTGTGGTGCCCTGAGATCTCTGCATCCTTGGTCTGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR-3UTR TCA 90 bp AGAAGCACAACAGGCTCGGCGCAGAGGACTGATACTCTAAATGGTCAGAGCGGGCCCTTGGTTGGGCACTaGAGCCCTCTGGAGAGGTTT +
Preference number: 2 (lower is better)
Translates to: RSTTGSAQRTDTLNGQSGPLVGH*SPLERF
Trigger: AAACCTCTCCAGAGGGCTTCAGTGCCCAACCAAGGG...CCCGCTCTGACCATTTAGAGTATCAGTCCTCTGCGCCGAGCCTGTTGTGCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR-3UTR GCA 90 bp CTCCCACTAAGAAGCACAACAGGCTCGGCGCAGAGGACTGATACTCTAAATGGTGCTGCAGTGCCCATGTaGCCTCTTGCAGCGCCTCAG +
Preference number: 2 (lower is better)
Translates to: LPLRSTTGSAQRTDTLNGAAVPM*PLAAPQ
Trigger: CTGAGGCGCTGCAAGAGGGCACATGGGCACTGCAGC...ACCATTTAGAGTATCAGTCCTCTGCGCCGAGCCTGTTGTGCTTCTTAGTGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR-3UTR GCA 90 bp GTTTGGCCAGATGATGAACAGATTGGAAGGGATCATTTGCCAACAGGGAGCCAGGCTTTGCACCCTGGCTaGAGTGCCCATGTGCCCTCT +
Preference number: 2 (lower is better)
Translates to: VWPDDEQIGRDHLPTGSQALHPG*SAHVPS
Trigger: AGAGGGCACATGGGCACTGCAGCCAGGGTGCAAAGC...CTGGCTCCCTGTTGGCAAATGATCCCTTCCAATCTGTTCATCATCTGGCCAAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR-3UTR GCA 90 bp GGGCTCCTTAATTTGACCTGTCTCCATCTCCTCCTCCACCAAACGTGCATGTCTGCCTCAGACCAAGGATaGAGAGATCTCAGGGCACCA +
Preference number: 2 (lower is better)
Translates to: GLLNLTCLHLLLHQTCMSASDQG*RDLRAP
Trigger: TGGTGCCCTGAGATCTCTGCATCCTTGGTCTGAGGC...AGACATGCACGTTTGGTGGAGGAGGAGATGGAGACAGGTCAAATTAAGGAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR-3UTR CCA 90 bp CAGATGATGAACAGATTGGAAGGGATCATTTGCCAACAGGGAGCCAGACATCATAGGGCACCACACCCTTaGTTGGGCACTGAAGCCCTC +
Preference number: 2 (lower is better)
Translates to: QMMNRLEGIICQQGARHHRAPHP*LGTEAL
Trigger: GAGGGCTTCAGTGCCCAACCAAGGGTGTGGTGCCCT...ATGATGTCTGGCTCCCTGTTGGCAAATGATCCCTTCCAATCTGTTCATCATCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR CAA 90 bp GACTGGAGATGTGGGCAGGTGAGGTTTGGCCAGATGATGAACAGATaGGAAGGGATCATTTGCCAACAGGGAGCCAGACATCATCCTGAA +
Preference number: 2 (lower is better)
Translates to: DWRCGQVRFGQMMNR*EGIICQQGARHHPE
Trigger: TTCAGGATGATGTCTGGCTCCCTGTTGGCAAATGATCCCTTCCAATCTGTTCATCATCTGGCCAAACCTCACCTGCCCACATCTCCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR-3UTR CCA 90 bp CAGATGATGAACAGATTGGAAGGGATCATTTGCCAACAGGGAGCCAGACATCATGTACATGGGCTTTTCTaGCCTGTAGCTGGAGTCAGG +
Preference number: 2 (lower is better)
Translates to: QMMNRLEGIICQQGARHHVHGLF*PVAGVR
Trigger: CCTGACTCCAGCTACAGGCCAGAAAAGCCCATGTAC...ATGATGTCTGGCTCCCTGTTGGCAAATGATCCCTTCCAATCTGTTCATCATCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR GCA 72 bp CAGAGCGGGGCTGAGGCTCTGGCTTTGCACCCTGGCTaGAGTGCCCATGTGCCCTCTTGCAGCGCCTCAGAC +
Preference number: 3 (lower is better)
Translates to: QSGAEALALHPG*SAHVPSCSASD
Trigger: GTCTGAGGCGCTGCAAGAGGGCACATGGGCACTGCAGCCAGGGTGCAAAGCCAGAGCCTCAGCCCCGCTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR GCA 72 bp GCCCATGTGCCCTCTTGCAGCGCCTCAGACCAAGGATaGAGAGATCTCAGGGCACCACACCCTTGGTTGGGC +
Preference number: 3 (lower is better)
Translates to: AHVPSCSASDQG*RDLRAPHPWLG
Trigger: GCCCAACCAAGGGTGTGGTGCCCTGAGATCTCTGCATCCTTGGTCTGAGGCGCTGCAAGAGGGCACATGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR-3UTR CAA 90 bp CACCCTGGCTGCAGTGCCCATGTGCCCTCTTGCAGCGCCTCAGACCAAGGATGCCCCTCTGGAGAGGTTTaGTTTGCAAAGCCCAGTACC +
Preference number: 3 (lower is better)
Translates to: HPGCSAHVPSCSASDQGCPSGEV*FAKPST
Trigger: GGTACTGGGCTTTGCAAACAAAACCTCTCCAGAGGG...GCATCCTTGGTCTGAGGCGCTGCAAGAGGGCACATGGGCACTGCAGCCAGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR-3UTR CAA 90 bp GTTTGGCCAGATGATGAACAGATTGGAAGGGATCATTTGCCAACAGGGAGCCAGGCTGAGGCTCTGGCTTaGCACCCTGGCTGCAGTGCC +
Preference number: 3 (lower is better)
Translates to: VWPDDEQIGRDHLPTGSQAEALA*HPGCSA
Trigger: GGCACTGCAGCCAGGGTGCAAAGCCAGAGCCTCAGC...CTGGCTCCCTGTTGGCAAATGATCCCTTCCAATCTGTTCATCATCTGGCCAAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR TCA 72 bp CAGAGATCTCAGGGCACCACACCCTTGGTTGGGCACTaGAGCCCTCTGGAGAGGTTTTGTTTGCAAAGCCCA +
Preference number: 3 (lower is better)
Translates to: QRSQGTTPLVGH*SPLERFCLQSP
Trigger: TGGGCTTTGCAAACAAAACCTCTCCAGAGGGCTTCAGTGCCCAACCAAGGGTGTGGTGCCCTGAGATCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR CCA 72 bp AAGGATGCAGAGATCTCAGGGCACCACACCCTTGGTTaGGCACTGAAGCCCTCTGGAGAGGTTTTGTTTGCA +
Preference number: 3 (lower is better)
Translates to: KDAEISGHHTLG*ALKPSGEVLFA
Trigger: TGCAAACAAAACCTCTCCAGAGGGCTTCAGTGCCCAACCAAGGGTGTGGTGCCCTGAGATCTCTGCATCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR CAA 72 bp CAAGGATGCAGAGATCTCAGGGCACCACACCCTTGGTaGGGCACTGAAGCCCTCTGGAGAGGTTTTGTTTGC +
Preference number: 4 (lower is better)
Translates to: QGCRDLRAPHPW*GTEALWRGFVC
Trigger: GCAAACAAAACCTCTCCAGAGGGCTTCAGTGCCCAACCAAGGGTGTGGTGCCCTGAGATCTCTGCATCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
CDS-3UTR GCA 90 bp CAGACCAAGGATGCAGAGATCTCAGGGCACCACACCCTTGGTTGGGCACTGAAGCAGGATCAGGGTTTTTaGCGCCAGGATATACAGCAG +
Preference number: 4 (lower is better)
Translates to: QTKDAEISGHHTLGWALKQDQGF*RQDIQQ
Trigger: CTGCTGTATATCCTGGCGGCAAAAACCCTGATCCTG...CTTCAGTGCCCAACCAAGGGTGTGGTGCCCTGAGATCTCTGCATCCTTGGTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
CDS-3UTR GCA 90 bp GGCCAGAGTGCGGTCCTCTTCTGTGACGTCTTTGTTCTCTCTTCTCTGCTGGAGCAGGATCAGGGTTTTTaGCGCCAGGATATACAGCAG +
Preference number: 4 (lower is better)
Translates to: GQSAVLFCDVFVLSSLLEQDQGF*RQDIQQ
Trigger: CTGCTGTATATCCTGGCGGCAAAAACCCTGATCCTG...CTCCAGCAGAGAAGAGAGAACAAAGACGTCACAGAAGAGGACCGCACTCTGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063641.11
CDS-3UTR GCA 90 bp GGCCAGAGTGCGGTCCTCTTCTGTGACGTCTTTGTTCTCTCTTCTCTGCTGGAGCTGCTTCCTCTTCTCTaGTTGCAGTTTTCCTTCCAG +
Preference number: 4 (lower is better)
Translates to: GQSAVLFCDVFVLSSLLELLPLL*LQFSFQ
Trigger: CTGGAAGGAAAACTGCAAGCAGAGAAGAGGAAGCAG...CTCCAGCAGAGAAGAGAGAACAAAGACGTCACAGAAGAGGACCGCACTCTGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063641.11
3UTR CAA 72 bp CCAGACATCATCCTGAAGATAGCAGGGCTCCTTAATTaGACCTGTCTCCATCTCCTCCTCCACCAAACGTGC +
Preference number: 4 (lower is better)
Translates to: PDIILKIAGLLN*TCLHLLLHQTC
Trigger: GCACGTTTGGTGGAGGAGGAGATGGAGACAGGTCAAATTAAGGAGCCCTGCTATCTTCAGGATGATGTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
3UTR CAA 72 bp TGTGGGCAGGTGAGGTTTGGCCAGATGATGAACAGATaGGAAGGGATCATTTGCCAACAGGGAGCCAGACAT +
Preference number: 4 (lower is better)
Translates to: CGQVRFGQMMNR*EGIICQQGARH
Trigger: ATGTCTGGCTCCCTGTTGGCAAATGATCCCTTCCAATCTGTTCATCATCTGGCCAAACCTCACCTGCCCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
CDS-3UTR GCA 90 bp CTAGGCCAGAGTGCGGTCCTCTTCTGTGACGTCTTTGTTCTCTCTTCTCTGCTGTTCCTCTTCTCTGCTTaGAGTTTTCCTTCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: LGQSAVLFCDVFVLSSLLFLFSA*SFPSRL
Trigger: AAGCCTGGAAGGAAAACTGCAAGCAGAGAAGAGGAA...CAGCAGAGAAGAGAGAACAAAGACGTCACAGAAGAGGACCGCACTCTGGCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063641.11
CDS-3UTR GCA 90 bp CCACTAAGAAGCACAACAGGCTCGGCGCAGAGGACTGATACTCTAAATGGTCAGTTCCTCTTCTCTGCTTaGAGTTTTCCTTCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: PLRSTTGSAQRTDTLNGQFLFSA*SFPSRL
Trigger: AAGCCTGGAAGGAAAACTGCAAGCAGAGAAGAGGAA...CTGACCATTTAGAGTATCAGTCCTCTGCGCCGAGCCTGTTGTGCTTCTTAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2
CDS-3UTR CAA 90 bp CTAGGCCAGAGTGCGGTCCTCTTCTGTGACGTCTTTGTTCTCTCTTCTCTGCTGCTTCCTCTTCTCTGCTaGCAGTTTTCCTTCCAGGCT +
Preference number: 5 (lower is better)
Translates to: LGQSAVLFCDVFVLSSLLLPLLC*QFSFQA
Trigger: AGCCTGGAAGGAAAACTGCAAGCAGAGAAGAGGAAG...CAGCAGAGAAGAGAGAACAAAGACGTCACAGAAGAGGACCGCACTCTGGCCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063641.11
CDS-3UTR CAA 90 bp CAGATGATGAACAGATTGGAAGGGATCATTTGCCAACAGGGAGCCAGACATCATCTTCCTCTTCTCTGCTaGCAGTTTTCCTTCCAGGCT +
Preference number: 5 (lower is better)
Translates to: QMMNRLEGIICQQGARHHLPLLC*QFSFQA
Trigger: AGCCTGGAAGGAAAACTGCAAGCAGAGAAGAGGAAG...ATGATGTCTGGCTCCCTGTTGGCAAATGATCCCTTCCAATCTGTTCATCATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118064.2