Pregenerated sensors for SMIM10L1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072704Ensembl transcript IDs: ENSMUST00000100864.7, ENSMUST00000186945.3, ENSMUST00000187237.2, ENSMUST00000191462.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGATCACAGTCCAAGGTGCAGTCCATCAAGGCAGGAGAAATAGAGTaGCAGGAGTTTGAGCAGGTGGTCCCATCAGAGTCTCACCTGGCA | + |
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Preference number: 1 (lower is better) Translates to: RSQSKVQSIKAGEIE*QEFEQVVPSESHLA Trigger: TGCCAGGTGAGACTCTGATGGGACCACCTGCTCAAACTCCTGCCACTCTATTTCTCCTGCCTTGATGGACTGCACCTTGGACTGTGATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187237.2 ENSMUST00000191462.2 |
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| 3UTR TCA 90 bp | CAAGGTGCAGTCCATCAAGGCAGGAGAAATAGAGTGGCAGGAGTTTaGGCAGGTGGTCCCATCAGAGTCTCACCTGGCAAATATGAAGCC | + |
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Preference number: 1 (lower is better) Translates to: QGAVHQGRRNRVAGV*AGGPIRVSPGKYEA Trigger: GGCTTCATATTTGCCAGGTGAGACTCTGATGGGACCACCTGCTCAAACTCCTGCCACTCTATTTCTCCTGCCTTGATGGACTGCACCTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187237.2 ENSMUST00000191462.2 |
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| 3UTR CCA 90 bp | TTCAACTTCCAGAGTACTGGAAAAACTTCCGTGTGCTACTATGTCTaGCTCTCACTGGATCCTTCAGTTATCTTTGAATATCAGGAAATT | + |
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Preference number: 1 (lower is better) Translates to: FNFQSTGKTSVCYYV*LSLDPSVIFEYQEI Trigger: AATTTCCTGATATTCAAAGATAACTGAAGGATCCAGTGAGAGCCAGACATAGTAGCACACGGAAGTTTTTCCAGTACTCTGGAAGTTGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR GCA 90 bp | GACCCAGATTCAATATATCCTCTTGTGGGAGGAAGAGAGATGCAATaGTTTTTAAGTCACATTCTTGACATAACAGGCTTCTTATTCAAT | + |
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Preference number: 1 (lower is better) Translates to: DPDSIYPLVGGREMQ*FLSHILDITGFLFN Trigger: ATTGAATAAGAAGCCTGTTATGTCAAGAATGTGACTTAAAAAGCATTGCATCTCTCTTCCTCCCACAAGAGGATATATTGAATCTGGGTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR TCA 90 bp | TCAAAGATTAATTCAGAACGTAAGTTTGGTGTAAATCTGTGTTCTTaGAAATCTCAGCCTTCCTTTCTCATAATGCATCTTGTGCCCTTT | + |
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Preference number: 1 (lower is better) Translates to: SKINSERKFGVNLCS*KSQPSFLIMHLVPF Trigger: AAAGGGCACAAGATGCATTATGAGAAAGGAAGGCTGAGATTTTCAAGAACACAGATTTACACCAAACTTACGTTCTGAATTAATCTTTGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR-3UTR GCA 90 bp | AGGAATTTACAGATGAGTGGTTCCTTGGATACTTCCTTGGATAGCTCCTCTGATGGGAAGCGGCCATCTTaGGGTCCCGGGTGGCGGGGC | + |
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Preference number: 2 (lower is better) Translates to: RNLQMSGSLDTSLDSSSDGKRPS*GPGWRG Trigger: GCCCCGCCACCCGGGACCGCAAGATGGCCGCTTCCC...ATCAGAGGAGCTATCCAAGGAAGTATCCAAGGAACCACTCATCTGTAAATTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR-3UTR TCA 90 bp | ACAAGCTTTATTTTAGATCACAGTCCAAGGTGCAGTCCATCAAGGCAGGAGAAAAGAGTGGCAGGAGTTTaGGCAGGTGGTCCCATCAGA | + |
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Preference number: 2 (lower is better) Translates to: TSFILDHSPRCSPSRQEKRVAGV*AGGPIR Trigger: TCTGATGGGACCACCTGCTCAAACTCCTGCCACTCT...TTTCTCCTGCCTTGATGGACTGCACCTTGGACTGTGATCTAAAATAAAGCTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000187237.2 ENSMUST00000191462.2 |
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| 3UTR-3UTR CCA 90 bp | TCCATCTTTGGACATTTACTATTTAGGTCATGTGGTTTCCACCTCCATTTAGCACCTGATAGGAGAGGTTaGGAGCCGACTGCCTGTGCG | + |
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Preference number: 2 (lower is better) Translates to: SIFGHLLFRSCGFHLHLAPDRRG*EPTACA Trigger: CGCACAGGCAGTCGGCTCCCAACCTCTCCTATCAGG...TGCTAAATGGAGGTGGAAACCACATGACCTAAATAGTAAATGTCCAAAGATGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR-3UTR TCA 90 bp | ATCACAGTCCAAGGTGCAGTCCATCAAGGCAGGAGAAATAGAGTGGCAGGAGTTTATGAAGCCTATTGCTaGCACAGCTCAGTAAACCTA | + |
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Preference number: 2 (lower is better) Translates to: ITVQGAVHQGRRNRVAGVYEAYC*HSSVNL Trigger: TAGGTTTACTGAGCTGTGTCAGCAATAGGCTTCATA...AACTCCTGCCACTCTATTTCTCCTGCCTTGATGGACTGCACCTTGGACTGTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187237.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGTACTGGAAAAACTTCCGTGTGCTACTATGTCTGGCTCTCACTGGATCCTTCAATATATCCTCTTGTaGGAGGAAGAGAGATGCAAT | + |
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Preference number: 2 (lower is better) Translates to: RVLEKLPCATMSGSHWILQYILL*EEERCN Trigger: ATTGCATCTCTCTTCCTCCCACAAGAGGATATATTG...AAGGATCCAGTGAGAGCCAGACATAGTAGCACACGGAAGTTTTTCCAGTACTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR-3UTR GCA 90 bp | CATATGGCAGTTCCAATTCAACTTCCAGAGTACTGGAAAAACTTCCGTGTGCTATCATATCCTAAGACTTaGCAGGAATTTACAGATGAG | + |
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Preference number: 2 (lower is better) Translates to: HMAVPIQLPEYWKNFRVLSYPKT*QEFTDE Trigger: CTCATCTGTAAATTCCTGGCAAGTCTTAGGATATGA...TAGCACACGGAAGTTTTTCCAGTACTCTGGAAGTTGAATTGGAACTGCCATATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR-3UTR CCA 90 bp | ATGGCTGTCCATAATCAACGAAATCTCCTTTCTGTTCACAAATTACACGTTTTAGAATTTACAGATGAGTaGTTCCTTGGATACTTCCTT | + |
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Preference number: 2 (lower is better) Translates to: MAVHNQRNLLSVHKLHVLEFTDE*FLGYFL Trigger: AAGGAAGTATCCAAGGAACCACTCATCTGTAAATTC...TAAAACGTGTAATTTGTGAACAGAAAGGAGATTTCGTTGATTATGGACAGCCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR GCA 72 bp | GAAGGTGCCGCGGGGCGACCTGGGAAGCGGCCATCTTaGGGTCCCGGGTGGCGGGGCAACGCAGACAAGGCT | + |
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Preference number: 3 (lower is better) Translates to: EGAAGRPGKRPS*GPGWRGNADKA Trigger: AGCCTTGTCTGCGTTGCCCCGCCACCCGGGACCGCAAGATGGCCGCTTCCCAGGTCGCCCCGCGGCACCTTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR GCA 72 bp | CCTTGGATAGCTCCTCTGATGCTGGAACAACATCCTTaGTTAACCCAGCTAGCTTTCCCACCTCCAAATCCC | + |
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Preference number: 3 (lower is better) Translates to: PWIAPLMLEQHP*LTQLAFPPPNP Trigger: GGGATTTGGAGGTGGGAAAGCTAGCTGGGTTAAGCAAGGATGTTGTTCCAGCATCAGAGGAGCTATCCAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR GCA 72 bp | CAATTCAACTTCCAGAGTACTGGAAAAACTTCCGTGTaGTACTATGTCTGGCTCTCACTGGATCCTTCAGTT | + |
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Preference number: 3 (lower is better) Translates to: QFNFQSTGKTSV*YYVWLSLDPSV Trigger: AACTGAAGGATCCAGTGAGAGCCAGACATAGTAGCACACGGAAGTTTTTCCAGTACTCTGGAAGTTGAATTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR TCA 72 bp | CTATTTGCATTACTACCAGGGAATAGTCAATTCCTGTaGGGCAATTGGACTTTCTTTCCTTTGGAACCAACG | + |
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Preference number: 3 (lower is better) Translates to: LFALLPGNSQFL*GNWTFFPLEPT Trigger: CGTTGGTTCCAAAGGAAAGAAAGTCCAATTGCCTCACAGGAATTGACTATTCCCTGGTAGTAATGCAAATAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR CCA 72 bp | GTTTTTATCATGTGGCTCAGGCTGTCCTTGAACATATaGCAGTTCCAATTCAACTTCCAGAGTACTGGAAAA | + |
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Preference number: 3 (lower is better) Translates to: VFIMWLRLSLNI*QFQFNFQSTGK Trigger: TTTTCCAGTACTCTGGAAGTTGAATTGGAACTGCCATATGTTCAAGGACAGCCTGAGCCACATGATAAAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR-3UTR CAA 90 bp | CACTGTCTTAATATGTGCTCACAGGAACAAATAACAGAGACAATTCCATGCCAATGCATCTTGTGCCCTTaGTCATATCCTAAGACTTGC | + |
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Preference number: 3 (lower is better) Translates to: HCLNMCSQEQITETIPCQCILCP*SYPKTC Trigger: GCAAGTCTTAGGATATGACAAAGGGCACAAGATGCA...TTGGCATGGAATTGTCTCTGTTATTTGTTCCTGTGAGCACATATTAAGACAGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR CCA 72 bp | GAAAAACTTCCGTGTGCTACTATGTCTGGCTCTCACTaGATCCTTCAGTTATCTTTGAATATCAGGAAATTT | + |
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Preference number: 3 (lower is better) Translates to: EKLPCATMSGSH*ILQLSLNIRKF Trigger: AAATTTCCTGATATTCAAAGATAACTGAAGGATCCAGTGAGAGCCAGACATAGTAGCACACGGAAGTTTTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR-3UTR CAA 90 bp | TCCATCTTTGGACATTTACTATTTAGGTCATGTGGTTTCCACCTCCATTTAGCATGTAAATCTGTGTTCTaGAAAATCTCAGCCTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: SIFGHLLFRSCGFHLHLACKSVF*KISAFL Trigger: AAGGAAGGCTGAGATTTTCAAGAACACAGATTTACA...TGCTAAATGGAGGTGGAAACCACATGACCTAAATAGTAAATGTCCAAAGATGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR TCA 72 bp | AATTCAGAACGTAAGTTTGGTGTAAATCTGTGTTCTTaGAAATCTCAGCCTTCCTTTCTCATAATGCATCTT | + |
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Preference number: 3 (lower is better) Translates to: NSERKFGVNLCS*KSQPSFLIMHL Trigger: AAGATGCATTATGAGAAAGGAAGGCTGAGATTTTCAAGAACACAGATTTACACCAAACTTACGTTCTGAATT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| CDS-3UTR TCA 90 bp | AAGGTGCAGTCCATCAAGGCAGGAGAAATAGAGTGGCAGGAGTTTGAGCAGGTGCCTGCAGGCGGATGTTaGGGATCACGGAGCCCGCGA | + |
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Preference number: 4 (lower is better) Translates to: KVQSIKAGEIEWQEFEQVPAGGC*GSRSPR Trigger: TCGCGGGCTCCGTGATCCTCAACATCCGCCTGCAGG...CACCTGCTCAAACTCCTGCCACTCTATTTCTCCTGCCTTGATGGACTGCACCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187237.2 ENSMUST00000191462.2 |
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| CDS-3UTR TCA 90 bp | AGAGTACTGGAAAAACTTCCGTGTGCTACTATGTCTGGCTCTCACTGGATCCTTCCTGCAGGCGGATGTTaGGGATCACGGAGCCCGCGA | + |
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Preference number: 4 (lower is better) Translates to: RVLEKLPCATMSGSHWILPAGGC*GSRSPR Trigger: TCGCGGGCTCCGTGATCCTCAACATCCGCCTGCAGG...AAGGATCCAGTGAGAGCCAGACATAGTAGCACACGGAAGTTTTTCCAGTACTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| CDS-3UTR GCA 90 bp | ATGAGTGGTTCCTTGGATACTTCCTTGGATAGCTCCTCTGATGCTGGAACAACAAGAAGGCGAGCAGGGTaGGGGACAGCCCCTTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: MSGSLDTSLDSSSDAGTTRRRAG*GTAPCR Trigger: TCTGCAAGGGGCTGTCCCGCACCCTGCTCGCCTTCT...TGTTGTTCCAGCATCAGAGGAGCTATCCAAGGAAGTATCCAAGGAACCACTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| CDS-3UTR GCA 90 bp | GGAGACAAGCTTTATTTTAGATCACAGTCCAAGGTGCAGTCCATCAAGGCAGGAAGAAGGCGAGCAGGGTaGGGGACAGCCCCTTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: GDKLYFRSQSKVQSIKAGRRRAG*GTAPCR Trigger: TCTGCAAGGGGCTGTCCCGCACCCTGCTCGCCTTCT...TCCTGCCTTGATGGACTGCACCTTGGACTGTGATCTAAAATAAAGCTTGTCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000187237.2 ENSMUST00000191462.2 |
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| CDS-3UTR TCA 90 bp | CTTTATTTTAGATCACAGTCCAAGGTGCAGTCCATCAAGGCAGGAGAAATAGAGCCTGCAGGCGGATGTTaGGGATCACGGAGCCCGCGA | + |
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Preference number: 4 (lower is better) Translates to: LYFRSQSKVQSIKAGEIEPAGGC*GSRSPR Trigger: TCGCGGGCTCCGTGATCCTCAACATCCGCCTGCAGG...CTCTATTTCTCCTGCCTTGATGGACTGCACCTTGGACTGTGATCTAAAATAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187237.2 ENSMUST00000191462.2 |
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| 3UTR CAA 72 bp | TCCTTGGATAGCTCCTCTGATGCTGGAACAACATCCTaGCTTAACCCAGCTAGCTTTCCCACCTCCAAATCC | + |
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Preference number: 4 (lower is better) Translates to: SLDSSSDAGTTS*LNPASFPTSKS Trigger: GGATTTGGAGGTGGGAAAGCTAGCTGGGTTAAGCAAGGATGTTGTTCCAGCATCAGAGGAGCTATCCAAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| CDS-3UTR TCA 90 bp | AGAAACATGGCTGTCCATAATCAACGAAATCTCCTTTCTGTTCACAAATTACACCCTGCAGGCGGATGTTaGGGATCACGGAGCCCGCGA | + |
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Preference number: 4 (lower is better) Translates to: RNMAVHNQRNLLSVHKLHPAGGC*GSRSPR Trigger: TCGCGGGCTCCGTGATCCTCAACATCCGCCTGCAGG...GTGTAATTTGTGAACAGAAAGGAGATTTCGTTGATTATGGACAGCCATGTTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000100864.7 ENSMUST00000186945.3 ENSMUST00000187237.2 |
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| CDS-3UTR GCA 90 bp | ATCATAAGTCTTGAGCTAGCCTGGAATACACAGCAATTTCCAGAGAAACCTATTAGAAGGCGAGCAGGGTaGGGGACAGCCCCTTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: IISLELAWNTQQFPEKPIRRRAG*GTAPCR Trigger: TCTGCAAGGGGCTGTCCCGCACCCTGCTCGCCTTCT...AATAGGTTTCTCTGGAAATTGCTGTGTATTCCAGGCTAGCTCAAGACTTATGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000187237.2 |
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| CDS-3UTR CCA 90 bp | AGATCACAGTCCAAGGTGCAGTCCATCAAGGCAGGAGAAATAGAGTGGCAGGAGAGTCTTGAGCTAGCCTaGAATACACAGCAATTTCCA | + |
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Preference number: 4 (lower is better) Translates to: RSQSKVQSIKAGEIEWQESLELA*NTQQFP Trigger: TGGAAATTGCTGTGTATTCCAGGCTAGCTCAAGACT...CTCCTGCCACTCTATTTCTCCTGCCTTGATGGACTGCACCTTGGACTGTGATCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191462.2 |
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| 3UTR CAA 72 bp | CTAAGACTTGCCAGGAATTTACAGATGAGTGGTTCCTaGGATACTTCCTTGGATAGCTCCTCTGATGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: LRLARNLQMSGS*DTSLDSSSDAG Trigger: TCCAGCATCAGAGGAGCTATCCAAGGAAGTATCCAAGGAACCACTCATCTGTAAATTCCTGGCAAGTCTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR CAA 72 bp | TGGGGCAGTGTTTTTATCATGTGGCTCAGGCTGTCCTaGAACATATGGCAGTTCCAATTCAACTTCCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: WGSVFIMWLRLS*NIWQFQFNFQS Trigger: ACTCTGGAAGTTGAATTGGAACTGCCATATGTTCAAGGACAGCCTGAGCCACATGATAAAAACACTGCCCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR CAA 72 bp | AGGAATTTACAGATGAGTGGTTCCTTGGATACTTCCTaGGATAGCTCCTCTGATGCTGGAACAACATCCTTG | + |
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Preference number: 4 (lower is better) Translates to: RNLQMSGSLDTS*DSSSDAGTTSL Trigger: CAAGGATGTTGTTCCAGCATCAGAGGAGCTATCCAAGGAAGTATCCAAGGAACCACTCATCTGTAAATTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| CDS-3UTR TCA 90 bp | CTTTATTTTAGATCACAGTCCAAGGTGCAGTCCATCAAGGCAGGAGAAATAGAGAGAGATCATAAGTCTTaGGCTAGCCTGGAATACACA | + |
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Preference number: 4 (lower is better) Translates to: LYFRSQSKVQSIKAGEIERDHKS*ASLEYT Trigger: TGTGTATTCCAGGCTAGCTCAAGACTTATGATCTCT...CTCTATTTCTCCTGCCTTGATGGACTGCACCTTGGACTGTGATCTAAAATAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191462.2 |
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| 3UTR CAA 72 bp | GCATATTTGGGGAGTATATTTTCCTGTAGTCTGACTTaGACCCAGATTCAATATATCCTCTTGTGGGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: AYLGSIFSCSLT*TQIQYILLWEE Trigger: TTCCTCCCACAAGAGGATATATTGAATCTGGGTCAAAGTCAGACTACAGGAAAATATACTCCCCAAATATGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR CAA 72 bp | CACTCCACAAAGGGCATCACCATTCCATTTAGTTTCTaGTCCCTCCACTTGTCAAATGTATTTCCTCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: HSTKGITIPFSF*SLHLSNVFPQK Trigger: TTTTTGAGGAAATACATTTGACAAGTGGAGGGACAAGAAACTAAATGGAATGGTGATGCCCTTTGTGGAGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100864.7 |
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| 3UTR CAA 72 bp | ATTAGCTCCTTTTCAGTCACTGAGAAAATTCCATCTTaGGACATTTACTATTTAGGTCATGTGGTTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: ISSFSVTEKIPS*DIYYLGHVVST Trigger: GGTGGAAACCACATGACCTAAATAGTAAATGTCCAAAGATGGAATTTTCTCAGTGACTGAAAAGGAGCTAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100864.7 ENSMUST00000186945.3 |
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| CDS GCA 72 bp | GCTCGAAGAAGGCGAGCAGGGTGCGGGACAGCCCCTTaGAGAAGACACCATACGGGGTGGCGGCCGCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: ARRRRAGCGTAP*RRHHTGWRPQG Trigger: GCCCTGCGGCCGCCACCCCGTATGGTGTCTTCTGCAAGGGGCTGTCCCGCACCCTGCTCGCCTTCTTCGAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000100864.7 ENSMUST00000187237.2 ENSMUST00000191462.2 |
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| CDS CAA 72 bp | AGCTCGAAGAAGGCGAGCAGGGTGCGGGACAGCCCCTaGCAGAAGACACCATACGGGGTGGCGGCCGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: SSKKASRVRDSP*QKTPYGVAAAG Trigger: CCCTGCGGCCGCCACCCCGTATGGTGTCTTCTGCAAGGGGCTGTCCCGCACCCTGCTCGCCTTCTTCGAGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000100864.7 ENSMUST00000187237.2 ENSMUST00000191462.2 |
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| CDS GCA 72 bp | CTAGCCTGGAATACACAGCAATTTCCAGAGAAACCCTaGAGGCGGATGTTGAGGATCACGGAGCCCGCGATG | + |
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Preference number: 6 (lower is better) Translates to: LAWNTQQFPEKP*RRMLRITEPAM Trigger: CATCGCGGGCTCCGTGATCCTCAACATCCGCCTGCAGGGTTTCTCTGGAAATTGCTGTGTATTCCAGGCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191462.2 |
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| CDS CCA 72 bp | GGTGATGGCAGAGAGATCATAAGTCTTGAGCTAGCCTaGAATACACAGCAATTTCCAGAGAAACCCTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: GDGREIISLELA*NTQQFPEKPCR Trigger: CCTGCAGGGTTTCTCTGGAAATTGCTGTGTATTCCAGGCTAGCTCAAGACTTATGATCTCTCTGCCATCACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191462.2 |
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