RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMIM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078350

Ensembl transcript IDs: ENSMUST00000125533.9, ENSMUST00000126119.8, ENSMUST00000130175.8, ENSMUST00000131325.3, ENSMUST00000132541.8, ENSMUST00000143047.8, ENSMUST00000145527.8, ENSMUST00000146054.8, ENSMUST00000146543.9, ENSMUST00000182151.8, ENSMUST00000182191.8

Found 194 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TACTGGGCAGCTGCCAGGAGTGGGCTGGGAGCACCTGACCCAGTGTaGAGTGCAGAATGTGGCTGGAAGCCCGCCTCACTGTCAGCCCGG +
Preference number: 1 (lower is better)
Translates to: YWAAARSGLGAPDPV*SAECGWKPASLSAR
Trigger: CCGGGCTGACAGTGAGGCGGGCTTCCAGCCACATTCTGCACTCCACACTGGGTCAGGTGCTCCCAGCCCACTCCTGGCAGCTGCCCAGTA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR TCA 90 bp GGGGAGGCAGCCGGTAGGGCACACAGCTTCTCTCCGGGCCATCCCTaGGGTGGTAAGCCCCTGTGCCCTGCACAGAAAGATTTGAGGCCC +
Preference number: 1 (lower is better)
Translates to: GEAAGRAHSFSPGHP*GGKPLCPAQKDLRP
Trigger: GGGCCTCAAATCTTTCTGTGCAGGGCACAGGGGCTTACCACCTCAGGGATGGCCCGGAGAGAAGCTGTGTGCCCTACCGGCTGCCTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp AGTGGGCTGGGAGCACCTGACCCAGTGTGGAGTGCAGAATGTGGCTaGAAGCCCGCCTCACTGTCAGCCCGGGACTACAGGAGACGCCTG +
Preference number: 1 (lower is better)
Translates to: SGLGAPDPVWSAECG*KPASLSARDYRRRL
Trigger: CAGGCGTCTCCTGTAGTCCCGGGCTGACAGTGAGGCGGGCTTCCAGCCACATTCTGCACTCCACACTGGGTCAGGTGCTCCCAGCCCACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR TCA 90 bp GCTGGAAGCCCGCCTCACTGTCAGCCCGGGACTACAGGAGACGCCTaGGGACAGTGCTCCCGTTCCTTTCCTTCCACATGGTGCCTCCTG +
Preference number: 1 (lower is better)
Translates to: AGSPPHCQPGTTGDA*GQCSRSFPSTWCLL
Trigger: CAGGAGGCACCATGTGGAAGGAAAGGAACGGGAGCACTGTCCTCAGGCGTCTCCTGTAGTCCCGGGCTGACAGTGAGGCGGGCTTCCAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp CCCAGCAGCTGCACAGAGGACTTGGTGGCCCCGTGCCTTGCCATCTaGCTGAGAAGAGAACCAGACCCTCAGCCTTCCCCCTCGACACCT +
Preference number: 1 (lower is better)
Translates to: PSSCTEDLVAPCLAI*LRREPDPQPSPSTP
Trigger: AGGTGTCGAGGGGGAAGGCTGAGGGTCTGGTTCTCTTCTCAGCCAGATGGCAAGGCACGGGGCCACCAAGTCCTCTGTGCAGCTGCTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR TCA 90 bp TCCGCAAGATTACTGGGCAGCTGCCAGGAGTGGGCTGGGAGCACCTaGCCCAGTGTGGAGTGCAGAATGTGGCTGGAAGCCCGCCTCACT +
Preference number: 1 (lower is better)
Translates to: SARLLGSCQEWAGST*PSVECRMWLEARLT
Trigger: AGTGAGGCGGGCTTCCAGCCACATTCTGCACTCCACACTGGGTCAGGTGCTCCCAGCCCACTCCTGGCAGCTGCCCAGTAATCTTGCGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 90 bp ACTGATAGCAGCAGCCCCTGTGCCTGCCACCCTCTCAGGTCAGTGTaGAGACCTCACAGTTTTCTAGCCACAGCCCGCCAGCCTTGCGCC +
Preference number: 1 (lower is better)
Translates to: TDSSSPCACHPLRSV*RPHSFLATARQPCA
Trigger: GGCGCAAGGCTGGCGGGCTGTGGCTAGAAAACTGTGAGGTCTGCACACTGACCTGAGAGGGTGGCAGGCACAGGGGCTGCTGCTATCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp TGCCGCCATGCTCCCAGGGCAGCATCTGCCTTCCACGGCTGTGCTTaGAACTGTAGTGCTGGTCGTTGTTGGCACATCTGCGCCTTGGCC +
Preference number: 1 (lower is better)
Translates to: CRHAPRAASAFHGCA*NCSAGRCWHICALA
Trigger: GGCCAAGGCGCAGATGTGCCAACAACGACCAGCACTACAGTTCCAAGCACAGCCGTGGAAGGCAGATGCTGCCCTGGGAGCATGGCGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 90 bp GTACGCATCTGTACCAGCACACAGCTGCCATCCCTCGAGCCACAGTaGCTGGTCCTAAGGACCCAGCAGCTGCACAGAGGACTTGGTGGC +
Preference number: 1 (lower is better)
Translates to: VRICTSTQLPSLEPQ*LVLRTQQLHRGLGG
Trigger: GCCACCAAGTCCTCTGTGCAGCTGCTGGGTCCTTAGGACCAGGCACTGTGGCTCGAGGGATGGCAGCTGTGTGCTGGTACAGATGCGTAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp GTCAGGAGGGGCACATTCCAAGACAGAGCCAAACAGGAGGAGCTGTaGAGGAGGGTCAGGCCTGGAACAAGTCATGCCTGGCTGGGCAGT +
Preference number: 1 (lower is better)
Translates to: VRRGTFQDRAKQEEL*RRVRPGTSHAWLGS
Trigger: ACTGCCCAGCCAGGCATGACTTGTTCCAGGCCTGACCCTCCTCCACAGCTCCTCCTGTTTGGCTCTGTCTTGGAATGTGCCCCTCCTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 90 bp TCTGGCCTCCTTCCTTTGGCCACTGATAGCAGCAGCCCCTGTGCCTaGCACCCTCTCAGGTCAGTGTGCAGACCTCACAGTTTTCTAGCC +
Preference number: 1 (lower is better)
Translates to: SGLLPLATDSSSPCA*HPLRSVCRPHSFLA
Trigger: GGCTAGAAAACTGTGAGGTCTGCACACTGACCTGAGAGGGTGGCAGGCACAGGGGCTGCTGCTATCAGTGGCCAAAGGAAGGAGGCCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp CTGTGTGACTCTCGCTGGTGGCTGCCTGGGCTGGGGTTTCAGTCTTaGGTCTACCCTGTGTACTGGAGATGGGGAGCCATGTTGACAGTG +
Preference number: 1 (lower is better)
Translates to: LCDSRWWLPGLGFQS*VYPVYWRWGAMLTV
Trigger: CACTGTCAACATGGCTCCCCATCTCCAGTACACAGGGTAGACCCAAGACTGAAACCCCAGCCCAGGCAGCCACCAGCGAGAGTCACACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR TCA 90 bp GTCCTCACATGGTCCAGTAAGGAGGGAACAGGTCCAGCCACATCCTaGCCCTTGGGTCTCTGTGTTCTTGGGAGAAGGCCCAGTCAGGAG +
Preference number: 1 (lower is better)
Translates to: VLTWSSKEGTGPATS*PLGLCVLGRRPSQE
Trigger: CTCCTGACTGGGCCTTCTCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGGCTGGACCTGTTCCCTCCTTACTGGACCATGTGAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp GAGCCACAGTCGTTATTCAGGGCCCATCCTGCACAACCAGGAATCTaGAAGGCCAAAAGACCAGGAGCCCTGCCCACAGGGAGAAGCTCA +
Preference number: 1 (lower is better)
Translates to: EPQSLFRAHPAQPGI*KAKRPGALPTGRSS
Trigger: TGAGCTTCTCCCTGTGGGCAGGGCTCCTGGTCTTTTGGCCTTCCAGATTCCTGGTTGTGCAGGATGGGCCCTGAATAACGACTGTGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 90 bp ACACTGGCATCTTCATATGCCCTGGGGTCTGTATGGAGGAGTGTCTaGACAAATGGCCTGTGTACATGGGAGGGAATCCCCAGGGCTGGG +
Preference number: 1 (lower is better)
Translates to: TLASSYALGSVWRSV*TNGLCTWEGIPRAG
Trigger: CCCAGCCCTGGGGATTCCCTCCCATGTACACAGGCCATTTGTGCAGACACTCCTCCATACAGACCCCAGGGCATATGAAGATGCCAGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 90 bp TGTTGTGAGTGTAATCTTCTTAGAGCTTGTTTCCAGGCACCGTGCTaGCGCCATGCTCCCAGGGCAGCATCTGCCTTCCACGGCTGTGCT +
Preference number: 1 (lower is better)
Translates to: CCECNLLRACFQAPC*RHAPRAASAFHGCA
Trigger: AGCACAGCCGTGGAAGGCAGATGCTGCCCTGGGAGCATGGCGGCAGCACGGTGCCTGGAAACAAGCTCTAAGAAGATTACACTCACAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 90 bp GGTGCCTCCTGCATCAAATACTACTCCTTCCTGTCACCTCTCTACTaGACCCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTAC +
Preference number: 1 (lower is better)
Translates to: GASCIKYYSFLSPLY*THVPGSAMSALSCY
Trigger: GTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGGGTGCAGTAGAGAGGTGACAGGAAGGAGTAGTATTTGATGCAGGAGGCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 90 bp GCAGGCTCCATGTCAGCGTGTCCCACTATTCATGTCCCATCTCTGTaGATCCTGACTGCGCACATCCCATCTCCGCATGTGTACGCATCT +
Preference number: 1 (lower is better)
Translates to: AGSMSACPTIHVPSL*ILTAHIPSPHVYAS
Trigger: AGATGCGTACACATGCGGAGATGGGATGTGCGCAGTCAGGATGCACAGAGATGGGACATGAATAGTGGGACACGCTGACATGGAGCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 90 bp TCATGTTGTGAGTGTAATCTTCTTAGAGCTTGTTTCCAGGCACCGTaGTGCCGCCATGCTCCCAGGGCAGCATCTGCCTTCCACGGCTGT +
Preference number: 1 (lower is better)
Translates to: SCCECNLLRACFQAP*CRHAPRAASAFHGC
Trigger: ACAGCCGTGGAAGGCAGATGCTGCCCTGGGAGCATGGCGGCAGCACGGTGCCTGGAAACAAGCTCTAAGAAGATTACACTCACAACATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp CCTGGGCTGGGGTTTCAGTCTTGGGTCTACCCTGTGTACTGGAGATaGGGAGCCATGTTGACAGTGCACACTGGCATCTTCATATGCCCT +
Preference number: 1 (lower is better)
Translates to: PGLGFQSWVYPVYWR*GAMLTVHTGIFICP
Trigger: AGGGCATATGAAGATGCCAGTGTGCACTGTCAACATGGCTCCCCATCTCCAGTACACAGGGTAGACCCAAGACTGAAACCCCAGCCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp TGGCTGCCTGGGCTGGGGTTTCAGTCTTGGGTCTACCCTGTGTACTaGAGATGGGGAGCCATGTTGACAGTGCACACTGGCATCTTCATA +
Preference number: 1 (lower is better)
Translates to: WLPGLGFQSWVYPVY*RWGAMLTVHTGIFI
Trigger: TATGAAGATGCCAGTGTGCACTGTCAACATGGCTCCCCATCTCCAGTACACAGGGTAGACCCAAGACTGAAACCCCAGCCCAGGCAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp GTCCTTTGTAGTCAGACAGATGCTTCGTGGACTGTGCCTCACACATaGCCCTGCAGGCTCCATGTCAGCGTGTCCCACTATTCATGTCCC +
Preference number: 1 (lower is better)
Translates to: VLCSQTDASWTVPHT*PCRLHVSVSHYSCP
Trigger: GGGACATGAATAGTGGGACACGCTGACATGGAGCCTGCAGGGCCATGTGTGAGGCACAGTCCACGAAGCATCTGTCTGACTACAAAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 90 bp TGGAGATGGGGAGCCATGTTGACAGTGCACACTGGCATCTTCATATaGCCTGGGGTCTGTATGGAGGAGTGTCTGCACAAATGGCCTGTG +
Preference number: 1 (lower is better)
Translates to: WRWGAMLTVHTGIFI*PGVCMEECLHKWPV
Trigger: CACAGGCCATTTGTGCAGACACTCCTCCATACAGACCCCAGGGCATATGAAGATGCCAGTGTGCACTGTCAACATGGCTCCCCATCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 90 bp GTCAGCGTGTCCCACTATTCATGTCCCATCTCTGTGCATCCTGACTaGGCACATCCCATCTCCGCATGTGTACGCATCTGTACCAGCACA +
Preference number: 1 (lower is better)
Translates to: VSVSHYSCPISVHPD*AHPISACVRICTST
Trigger: TGTGCTGGTACAGATGCGTACACATGCGGAGATGGGATGTGCGCAGTCAGGATGCACAGAGATGGGACATGAATAGTGGGACACGCTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp TTCACAGCATACTGGGAACAAGGTGTGGTCCAGAGAAGTTCTACATaGGCCACTGGAGAGGGGACCAAAGTCCCCATCGAGTCACAGTGC +
Preference number: 1 (lower is better)
Translates to: FTAYWEQGVVQRSST*ATGEGTKVPIESQC
Trigger: GCACTGTGACTCGATGGGGACTTTGGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCTTGTTCCCAGTATGCTGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR TCA 90 bp TTCAGTCTTGGGTCTACCCTGTGTACTGGAGATGGGGAGCCATGTTaGCAGTGCACACTGGCATCTTCATATGCCCTGGGGTCTGTATGG +
Preference number: 1 (lower is better)
Translates to: FSLGSTLCTGDGEPC*QCTLASSYALGSVW
Trigger: CCATACAGACCCCAGGGCATATGAAGATGCCAGTGTGCACTGTCAACATGGCTCCCCATCTCCAGTACACAGGGTAGACCCAAGACTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 90 bp CCTGAGGACAGTGCTCCCGTTCCTTTCCTTCCACATGGTGCCTCCTaGATCAAATACTACTCCTTCCTGTCACCTCTCTACTGCACCCAT +
Preference number: 1 (lower is better)
Translates to: PEDSAPVPFLPHGAS*IKYYSFLSPLYCTH
Trigger: ATGGGTGCAGTAGAGAGGTGACAGGAAGGAGTAGTATTTGATGCAGGAGGCACCATGTGGAAGGAAAGGAACGGGAGCACTGTCCTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp GTTATCTATGTCCGTGTAGTCCTTTGTAGTCAGACAGATGCTTCGTaGACTGTGCCTCACACATGGCCCTGCAGGCTCCATGTCAGCGTG +
Preference number: 1 (lower is better)
Translates to: VIYVRVVLCSQTDAS*TVPHTWPCRLHVSV
Trigger: CACGCTGACATGGAGCCTGCAGGGCCATGTGTGAGGCACAGTCCACGAAGCATCTGTCTGACTACAAAGGACTACACGGACATAGATAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp TCTGCCTTCCACGGCTGTGCTTGGAACTGTAGTGCTGGTCGTTGTTaGCACATCTGCGCCTTGGCCAAGGAAGTTATCTATGTCCGTGTA +
Preference number: 1 (lower is better)
Translates to: SAFHGCAWNCSAGRC*HICALAKEVIYVRV
Trigger: TACACGGACATAGATAACTTCCTTGGCCAAGGCGCAGATGTGCCAACAACGACCAGCACTACAGTTCCAAGCACAGCCGTGGAAGGCAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 90 bp AGTAACTGCTGGGGATGTTCTGAATCATGTGGCCTGTGGCCGTGCTaGAGAGTCAGGTTGAACGCAGGCATTCTATTGAACAGTATTTAT +
Preference number: 1 (lower is better)
Translates to: SNCWGCSESCGLWPC*RVRLNAGILLNSIY
Trigger: ATAAATACTGTTCAATAGAATGCCTGCGTTCAACCTGACTCTCCAGCACGGCCACAGGCCACATGATTCAGAACATCCCCAGCAGTTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CTGGCCTCCTTCCTTTGGCCACTGATAGCAGCAGCCCCTGTGCCTGCCACCCTCGTTCCCGAGTGGGCATaGGTGGGGAAGCGGCGGGCT +
Preference number: 2 (lower is better)
Translates to: LASFLWPLIAAAPVPATLVPEWA*VGKRRA
Trigger: AGCCCGCCGCTTCCCCACCCATGCCCACTCGGGAAC...GAGGGTGGCAGGCACAGGGGCTGCTGCTATCAGTGGCCAAAGGAAGGAGGCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp AGGCACCGTGCTGCCGCCATGCTCCCAGGGCAGCATCTGCCTTCCACGGCTGTGGCAGGGGTTGGCTTCTaGCCTCCTTCCTTTGGCCAC +
Preference number: 2 (lower is better)
Translates to: RHRAAAMLPGQHLPSTAVAGVGF*PPSFGH
Trigger: GTGGCCAAAGGAAGGAGGCCAGAAGCCAACCCCTGC...CACAGCCGTGGAAGGCAGATGCTGCCCTGGGAGCATGGCGGCAGCACGGTGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp AGGCACCGTGCTGCCGCCATGCTCCCAGGGCAGCATCTGCCTTCCACGGCTGTGAAAGACCAGGAGCCCTaGCCACAGGGAGAAGCTCAC +
Preference number: 2 (lower is better)
Translates to: RHRAAAMLPGQHLPSTAVKDQEP*PQGEAH
Trigger: GTGAGCTTCTCCCTGTGGGCAGGGCTCCTGGTCTTT...CACAGCCGTGGAAGGCAGATGCTGCCCTGGGAGCATGGCGGCAGCACGGTGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR TCA 90 bp GGACCCAGCAGCTGCACAGAGGACTTGGTGGCCCCGTGCCTTGCCATCTGGCTGGGTCCAGCCACATCCTaGCCCTTGGGTCTCTGTGTT +
Preference number: 2 (lower is better)
Translates to: GPSSCTEDLVAPCLAIWLGPATS*PLGLCV
Trigger: AACACAGAGACCCAAGGGTCAGGATGTGGCTGGACC...CAGCCAGATGGCAAGGCACGGGGCCACCAAGTCCTCTGTGCAGCTGCTGGGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GGACCCAGCAGCTGCACAGAGGACTTGGTGGCCCCGTGCCTTGCCATCTGGCTGGGGAAGATGGAGCACTaGCCAAAGGAATCGGGGCAC +
Preference number: 2 (lower is better)
Translates to: GPSSCTEDLVAPCLAIWLGKMEH*PKESGH
Trigger: GTGCCCCGATTCCTTTGGCCAGTGCTCCATCTTCCC...CAGCCAGATGGCAAGGCACGGGGCCACCAAGTCCTCTGTGCAGCTGCTGGGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp TTCTTAGAGCTTGTTTCCAGGCACCGTGCTGCCGCCATGCTCCCAGGGCAGCATTTCCAGGCACCGTGCTaGCGCCATGCTCCCAGGGCA +
Preference number: 2 (lower is better)
Translates to: FLELVSRHRAAAMLPGQHFQAPC*RHAPRA
Trigger: TGCCCTGGGAGCATGGCGGCAGCACGGTGCCTGGAA...ATGCTGCCCTGGGAGCATGGCGGCAGCACGGTGCCTGGAAACAAGCTCTAAGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp ACAGCTGCCATCCCTCGAGCCACAGTGCCTGGTCCTAAGGACCCAGCAGCTGCAGGGGTGCGGGTGAGGTaGAGAACACACCACCGTCTT +
Preference number: 2 (lower is better)
Translates to: TAAIPRATVPGPKDPAAAGVRVR*RTHHRL
Trigger: AAGACGGTGGTGTGTTCTCCACCTCACCCGCACCCC...TGCAGCTGCTGGGTCCTTAGGACCAGGCACTGTGGCTCGAGGGATGGCAGCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR TCA 90 bp AGGCACCGTGCTGCCGCCATGCTCCCAGGGCAGCATCTGCCTTCCACGGCTGTGACACCTTCTCGTTGGTaGCCTCTGACCTTAAAGGAC +
Preference number: 2 (lower is better)
Translates to: RHRAAAMLPGQHLPSTAVTPSRW*PLTLKD
Trigger: GTCCTTTAAGGTCAGAGGTCACCAACGAGAAGGTGT...CACAGCCGTGGAAGGCAGATGCTGCCCTGGGAGCATGGCGGCAGCACGGTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp GGGGCACATTCCAAGACAGAGCCAAACAGGAGGAGCTGTGGAGGAGGGTCAGGCACTCTCGCTGGTGGCTaGCTGGGCTGGGGTTTCAGT +
Preference number: 2 (lower is better)
Translates to: GAHSKTEPNRRSCGGGSGTLAGG*LGWGFS
Trigger: ACTGAAACCCCAGCCCAGGCAGCCACCAGCGAGAGT...GCCTGACCCTCCTCCACAGCTCCTCCTGTTTGGCTCTGTCTTGGAATGTGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp CATGAGACACGGCTGCTCACAGGTCCCTTTGAGTGGCTGTGGCAAGTACTCACCTTGCGATGCCCGCCTTaGGGCAGCTCAGGACTGGGG +
Preference number: 2 (lower is better)
Translates to: HETRLLTGPFEWLWQVLTLRCPP*GSSGLG
Trigger: CCCCAGTCCTGAGCTGCCGCAAGGCGGGCATCGCAA...GGTGAGTACTTGCCACAGCCACTCAAAGGGACCTGTGAGCAGCCGTGTCTCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CAGGGGTTGGCTTCTGGCCTCCTTCCTTTGGCCACTGATAGCAGCAGCCCCTGTGGTGGCTGCCTGGGCTaGGGTTTCAGTCTTGGGTCT +
Preference number: 2 (lower is better)
Translates to: QGLASGLLPLATDSSSPCGGCLG*GFSLGS
Trigger: AGACCCAAGACTGAAACCCCAGCCCAGGCAGCCACC...ACAGGGGCTGCTGCTATCAGTGGCCAAAGGAAGGAGGCCAGAAGCCAACCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GGGGCACATTCCAAGACAGAGCCAAACAGGAGGAGCTGTGGAGGAGGGTCAGGCTCGCTGGTGGCTGCCTaGGCTGGGGTTTCAGTCTTG +
Preference number: 2 (lower is better)
Translates to: GAHSKTEPNRRSCGGGSGSLVAA*AGVSVL
Trigger: CAAGACTGAAACCCCAGCCCAGGCAGCCACCAGCGA...GCCTGACCCTCCTCCACAGCTCCTCCTGTTTGGCTCTGTCTTGGAATGTGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TACCAGCACACAGCTGCCATCCCTCGAGCCACAGTGCCTGGTCCTAAGGACCCATCGCTGGTGGCTGCCTaGGCTGGGGTTTCAGTCTTG +
Preference number: 2 (lower is better)
Translates to: YQHTAAIPRATVPGPKDPSLVAA*AGVSVL
Trigger: CAAGACTGAAACCCCAGCCCAGGCAGCCACCAGCGA...TGGGTCCTTAGGACCAGGCACTGTGGCTCGAGGGATGGCAGCTGTGTGCTGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GGGAGAAGGCCCAGTCAGGAGGGGCACATTCCAAGACAGAGCCAAACAGGAGGAACAGTCTCTAAGGAGTaGGGGCTGGTGGGGAGGCAG +
Preference number: 2 (lower is better)
Translates to: GRRPSQEGHIPRQSQTGGTVSKE*GLVGRQ
Trigger: CTGCCTCCCCACCAGCCCCCACTCCTTAGAGACTGT...TCCTCCTGTTTGGCTCTGTCTTGGAATGTGCCCCTCCTGACTGGGCCTTCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GGTGTGGTCCAGAGAAGTTCTACATGGGCCACTGGAGAGGGGACCAAAGTCCCCACAGTCTCTAAGGAGTaGGGGCTGGTGGGGAGGCAG +
Preference number: 2 (lower is better)
Translates to: GVVQRSSTWATGEGTKVPTVSKE*GLVGRQ
Trigger: CTGCCTCCCCACCAGCCCCCACTCCTTAGAGACTGT...GGGGACTTTGGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GGGGCACATTCCAAGACAGAGCCAAACAGGAGGAGCTGTGGAGGAGGGTCAGGCGAGGAGGGTCAGGCCTaGAACAAGTCATGCCTGGCT +
Preference number: 2 (lower is better)
Translates to: GAHSKTEPNRRSCGGGSGEEGQA*NKSCLA
Trigger: AGCCAGGCATGACTTGTTCCAGGCCTGACCCTCCTC...GCCTGACCCTCCTCCACAGCTCCTCCTGTTTGGCTCTGTCTTGGAATGTGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GAGGACTTGGTGGCCCCGTGCCTTGCCATCTGGCTGAGAAGAGAACCAGACCCTGCACCTGACCCAGTGTaGAGTGCAGAATGTGGCTGG +
Preference number: 2 (lower is better)
Translates to: EDLVAPCLAIWLRREPDPAPDPV*SAECGW
Trigger: CCAGCCACATTCTGCACTCCACACTGGGTCAGGTGC...AGGGTCTGGTTCTCTTCTCAGCCAGATGGCAAGGCACGGGGCCACCAAGTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR TCA 90 bp ACTGCACCCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGGGTCCAGCCACATCCTaGCCCTTGGGTCTCTGTGTT +
Preference number: 2 (lower is better)
Translates to: TAPMSLAQPCLPCLATHLGPATS*PLGLCV
Trigger: AACACAGAGACCCAAGGGTCAGGATGTGGCTGGACC...CAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGGGTGCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp CCCAGTCAGGAGGGGCACATTCCAAGACAGAGCCAAACAGGAGGAGCTGTGGAGAAAGACCAGGAGCCCTaGCCACAGGGAGAAGCTCAC +
Preference number: 2 (lower is better)
Translates to: PSQEGHIPRQSQTGGAVEKDQEP*PQGEAH
Trigger: GTGAGCTTCTCCCTGTGGGCAGGGCTCCTGGTCTTT...CTCCACAGCTCCTCCTGTTTGGCTCTGTCTTGGAATGTGCCCCTCCTGACTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GGGGCACATTCCAAGACAGAGCCAAACAGGAGGAGCTGTGGAGGAGGGTCAGGCAATGGCCTGTGTACATaGGAGGGAATCCCCAGGGCT +
Preference number: 2 (lower is better)
Translates to: GAHSKTEPNRRSCGGGSGNGLCT*EGIPRA
Trigger: AGCCCTGGGGATTCCCTCCCATGTACACAGGCCATT...GCCTGACCCTCCTCCACAGCTCCTCCTGTTTGGCTCTGTCTTGGAATGTGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GGGAACAGGTCCAGCCACATCCTGACCCTTGGGTCTCTGTGTTCTTGGGAGAAGGGTGGCTGCCTGGGCTaGGGTTTCAGTCTTGGGTCT +
Preference number: 2 (lower is better)
Translates to: GNRSSHILTLGSLCSWEKGGCLG*GFSLGS
Trigger: AGACCCAAGACTGAAACCCCAGCCCAGGCAGCCACC...CTTCTCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGGCTGGACCTGTTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GGGAACAGGTCCAGCCACATCCTGACCCTTGGGTCTCTGTGTTCTTGGGAGAAGTGTGACTCTCGCTGGTaGCTGCCTGGGCTGGGGTTT +
Preference number: 2 (lower is better)
Translates to: GNRSSHILTLGSLCSWEKCDSRW*LPGLGF
Trigger: AAACCCCAGCCCAGGCAGCCACCAGCGAGAGTCACA...CTTCTCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGGCTGGACCTGTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GTCCAGAGAAGTTCTACATGGGCCACTGGAGAGGGGACCAAAGTCCCCATCGAGTGTGACTCTCGCTGGTaGCTGCCTGGGCTGGGGTTT +
Preference number: 2 (lower is better)
Translates to: VQRSSTWATGEGTKVPIECDSRW*LPGLGF
Trigger: AAACCCCAGCCCAGGCAGCCACCAGCGAGAGTCACA...CTCGATGGGGACTTTGGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGCTCCAAATGTGACTCTCGCTGGTaGCTGCCTGGGCTGGGGTTT +
Preference number: 2 (lower is better)
Translates to: PCPWLSHVCPVLLHTCSKCDSRW*LPGLGF
Trigger: AAACCCCAGCCCAGGCAGCCACCAGCGAGAGTCACA...TTTGGAGCAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GGGAGAAGGCCCAGTCAGGAGGGGCACATTCCAAGACAGAGCCAAACAGGAGGAGGGAAGATGGAGCACTaGCCAAAGGAATCGGGGCAC +
Preference number: 2 (lower is better)
Translates to: GRRPSQEGHIPRQSQTGGGKMEH*PKESGH
Trigger: GTGCCCCGATTCCTTTGGCCAGTGCTCCATCTTCCC...TCCTCCTGTTTGGCTCTGTCTTGGAATGTGCCCCTCCTGACTGGGCCTTCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TGCCTGCCACCCTCTCAGGTCAGTGTGCAGACCTCACAGTTTTCTAGCCACAGCACAGTCTCTAAGGAGTaGGGGCTGGTGGGGAGGCAG +
Preference number: 2 (lower is better)
Translates to: CLPPSQVSVQTSQFSSHSTVSKE*GLVGRQ
Trigger: CTGCCTCCCCACCAGCCCCCACTCCTTAGAGACTGT...GCTGTGGCTAGAAAACTGTGAGGTCTGCACACTGACCTGAGAGGGTGGCAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CATGAGACACGGCTGCTCACAGGTCCCTTTGAGTGGCTGTGGCAAGTACTCACCACAGTCTCTAAGGAGTaGGGGCTGGTGGGGAGGCAG +
Preference number: 2 (lower is better)
Translates to: HETRLLTGPFEWLWQVLTTVSKE*GLVGRQ
Trigger: CTGCCTCCCCACCAGCCCCCACTCCTTAGAGACTGT...GGTGAGTACTTGCCACAGCCACTCAAAGGGACCTGTGAGCAGCCGTGTCTCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TACCAGCACACAGCTGCCATCCCTCGAGCCACAGTGCCTGGTCCTAAGGACCCACAGAGAAGTTCTACATaGGCCACTGGAGAGGGGACC +
Preference number: 2 (lower is better)
Translates to: YQHTAAIPRATVPGPKDPQRSST*ATGEGT
Trigger: GGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTG...TGGGTCCTTAGGACCAGGCACTGTGGCTCGAGGGATGGCAGCTGTGTGCTGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGCTCCAAAGCAGGGGTTGGCTTCTaGCCTCCTTCCTTTGGCCAC +
Preference number: 2 (lower is better)
Translates to: PCPWLSHVCPVLLHTCSKAGVGF*PPSFGH
Trigger: GTGGCCAAAGGAAGGAGGCCAGAAGCCAACCCCTGC...TTTGGAGCAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TACAGGAGACGCCTGAGGACAGTGCTCCCGTTCCTTTCCTTCCACATGGTGCCTGGGGTGCGGGTGAGGTaGAGAACACACCACCGTCTT +
Preference number: 2 (lower is better)
Translates to: YRRRLRTVLPFLSFHMVPGVRVR*RTHHRL
Trigger: AAGACGGTGGTGTGTTCTCCACCTCACCCGCACCCC...AGGCACCATGTGGAAGGAAAGGAACGGGAGCACTGTCCTCAGGCGTCTCCTGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp GGGGCACATTCCAAGACAGAGCCAAACAGGAGGAGCTGTGGAGGAGGGTCAGGCGGTGGTAAGCCCCTGTaGCCTGCACAGAAAGATTTG +
Preference number: 2 (lower is better)
Translates to: GAHSKTEPNRRSCGGGSGGGKPL*PAQKDL
Trigger: CAAATCTTTCTGTGCAGGGCACAGGGGCTTACCACC...GCCTGACCCTCCTCCACAGCTCCTCCTGTTTGGCTCTGTCTTGGAATGTGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp TACCAGCACACAGCTGCCATCCCTCGAGCCACAGTGCCTGGTCCTAAGGACCCAGGTGGTAAGCCCCTGTaGCCTGCACAGAAAGATTTG +
Preference number: 2 (lower is better)
Translates to: YQHTAAIPRATVPGPKDPGGKPL*PAQKDL
Trigger: CAAATCTTTCTGTGCAGGGCACAGGGGCTTACCACC...TGGGTCCTTAGGACCAGGCACTGTGGCTCGAGGGATGGCAGCTGTGTGCTGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp AGGCACCGTGCTGCCGCCATGCTCCCAGGGCAGCATCTGCCTTCCACGGCTGTGTTTCCTTCCACATGGTaGCTCCTGCATCAAATACTA +
Preference number: 2 (lower is better)
Translates to: RHRAAAMLPGQHLPSTAVFPSTW*LLHQIL
Trigger: TAGTATTTGATGCAGGAGGCACCATGTGGAAGGAAA...CACAGCCGTGGAAGGCAGATGCTGCCCTGGGAGCATGGCGGCAGCACGGTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TGTGCCTGCCACCCTCTCAGGTCAGTGTGCAGACCTCACAGTTTTCTAGCCACATGTGACTCTCGCTGGTaGCTGCCTGGGCTGGGGTTT +
Preference number: 2 (lower is better)
Translates to: CACHPLRSVCRPHSFLATCDSRW*LPGLGF
Trigger: AAACCCCAGCCCAGGCAGCCACCAGCGAGAGTCACA...TGTGGCTAGAAAACTGTGAGGTCTGCACACTGACCTGAGAGGGTGGCAGGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GGGAACAGGTCCAGCCACATCCTGACCCTTGGGTCTCTGTGTTCTTGGGAGAAGGGGAAGATGGAGCACTaGCCAAAGGAATCGGGGCAC +
Preference number: 2 (lower is better)
Translates to: GNRSSHILTLGSLCSWEKGKMEH*PKESGH
Trigger: GTGCCCCGATTCCTTTGGCCAGTGCTCCATCTTCCC...CTTCTCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGGCTGGACCTGTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TACCAGCACACAGCTGCCATCCCTCGAGCCACAGTGCCTGGTCCTAAGGACCCACTAGGCTGGGGAAGATaGAGCACTGGCCAAAGGAAT +
Preference number: 2 (lower is better)
Translates to: YQHTAAIPRATVPGPKDPLGWGR*STGQRN
Trigger: ATTCCTTTGGCCAGTGCTCCATCTTCCCCAGCCTAG...TGGGTCCTTAGGACCAGGCACTGTGGCTCGAGGGATGGCAGCTGTGTGCTGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TGCCTGCCACCCTCTCAGGTCAGTGTGCAGACCTCACAGTTTTCTAGCCACAGCGAGGAGGGTCAGGCCTaGAACAAGTCATGCCTGGCT +
Preference number: 2 (lower is better)
Translates to: CLPPSQVSVQTSQFSSHSEEGQA*NKSCLA
Trigger: AGCCAGGCATGACTTGTTCCAGGCCTGACCCTCCTC...GCTGTGGCTAGAAAACTGTGAGGTCTGCACACTGACCTGAGAGGGTGGCAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CAGGTCCAGCCACATCCTGACCCTTGGGTCTCTGTGTTCTTGGGAGAAGGCCCACAGAGAAGTTCTACATaGGCCACTGGAGAGGGGACC +
Preference number: 2 (lower is better)
Translates to: QVQPHPDPWVSVFLGEGPQRSST*ATGEGT
Trigger: GGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTG...TGGGCCTTCTCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGGCTGGACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp ACTGCACCCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGAGTGCAGAATGTGGCTaGAAGCCCGCCTCACTGTCA +
Preference number: 2 (lower is better)
Translates to: TAPMSLAQPCLPCLATHLSAECG*KPASLS
Trigger: TGACAGTGAGGCGGGCTTCCAGCCACATTCTGCACT...CAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGGGTGCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGCTCCAAAGGGAATCCCCAGGGCTaGGAGTGGGGCAGCATTTAT +
Preference number: 2 (lower is better)
Translates to: PCPWLSHVCPVLLHTCSKGNPQG*EWGSIY
Trigger: ATAAATGCTGCCCCACTCCCAGCCCTGGGGATTCCC...TTTGGAGCAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp ATCCTGACTGCGCACATCCCATCTCCGCATGTGTACGCATCTGTACCAGCACACAAAGACCAGGAGCCCTaGCCACAGGGAGAAGCTCAC +
Preference number: 2 (lower is better)
Translates to: ILTAHIPSPHVYASVPAHKDQEP*PQGEAH
Trigger: GTGAGCTTCTCCCTGTGGGCAGGGCTCCTGGTCTTT...GTGTGCTGGTACAGATGCGTACACATGCGGAGATGGGATGTGCGCAGTCAGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGCTCCAAAAATGGCCTGTGTACATaGGAGGGAATCCCCAGGGCT +
Preference number: 2 (lower is better)
Translates to: PCPWLSHVCPVLLHTCSKNGLCT*EGIPRA
Trigger: AGCCCTGGGGATTCCCTCCCATGTACACAGGCCATT...TTTGGAGCAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CCCAGTCAGGAGGGGCACATTCCAAGACAGAGCCAAACAGGAGGAGCTGTGGAGCCTGTGTACTGGAGATaGGGAGCCATGTTGACAGTG +
Preference number: 2 (lower is better)
Translates to: PSQEGHIPRQSQTGGAVEPVYWR*GAMLTV
Trigger: CACTGTCAACATGGCTCCCCATCTCCAGTACACAGG...CTCCACAGCTCCTCCTGTTTGGCTCTGTCTTGGAATGTGCCCCTCCTGACTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp ACCTGCTCCAAAGATGACCTCTTGACAAGAGCTCCACTAGGCCTTAGGGGGTCCGGGAAGATGGAGCACTaGCCAAAGGAATCGGGGCAC +
Preference number: 2 (lower is better)
Translates to: TCSKDDLLTRAPLGLRGSGKMEH*PKESGH
Trigger: GTGCCCCGATTCCTTTGGCCAGTGCTCCATCTTCCC...GGACCCCCTAAGGCCTAGTGGAGCTCTTGTCAAGAGGTCATCTTTGGAGCAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GGGAGAAGGCCCAGTCAGGAGGGGCACATTCCAAGACAGAGCCAAACAGGAGGACTAGGCTGGGGAAGATaGAGCACTGGCCAAAGGAAT +
Preference number: 2 (lower is better)
Translates to: GRRPSQEGHIPRQSQTGGLGWGR*STGQRN
Trigger: ATTCCTTTGGCCAGTGCTCCATCTTCCCCAGCCTAG...TCCTCCTGTTTGGCTCTGTCTTGGAATGTGCCCCTCCTGACTGGGCCTTCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp GAATCATGTGGCCTGTGGCCGTGCTGGAGAGTCAGGTTGAACGCAGGCATTCTAGAGGAGGGTCAGGCCTaGAACAAGTCATGCCTGGCT +
Preference number: 2 (lower is better)
Translates to: ESCGLWPCWRVRLNAGILEEGQA*NKSCLA
Trigger: AGCCAGGCATGACTTGTTCCAGGCCTGACCCTCCTC...TAGAATGCCTGCGTTCAACCTGACTCTCCAGCACGGCCACAGGCCACATGATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp ACTGCACCCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGCCACATCCTGACCCTTaGGTCTCTGTGTTCTTGGGA +
Preference number: 2 (lower is better)
Translates to: TAPMSLAQPCLPCLATHLPHPDP*VSVFLG
Trigger: TCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGG...CAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGGGTGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp AGGTGTGGTCCAGAGAAGTTCTACATGGGCCACTGGAGAGGGGACCAAAGTCCCCAGAGAAGTTCTACATaGGCCACTGGAGAGGGGACC +
Preference number: 2 (lower is better)
Translates to: RCGPEKFYMGHWRGDQSPQRSST*ATGEGT
Trigger: GGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTG...GGGACTTTGGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR TCA 90 bp TGTGCCTGCCACCCTCTCAGGTCAGTGTGCAGACCTCACAGTTTTCTAGCCACACTGCACAGAAAGATTTaGGGCCCTGTCTGTGTGCCC +
Preference number: 2 (lower is better)
Translates to: CACHPLRSVCRPHSFLATLHRKI*GPVCVP
Trigger: GGGCACACAGACAGGGCCTCAAATCTTTCTGTGCAG...TGTGGCTAGAAAACTGTGAGGTCTGCACACTGACCTGAGAGGGTGGCAGGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR TCA 90 bp ATCCTGACTGCGCACATCCCATCTCCGCATGTGTACGCATCTGTACCAGCACACCTGCACAGAAAGATTTaGGGCCCTGTCTGTGTGCCC +
Preference number: 2 (lower is better)
Translates to: ILTAHIPSPHVYASVPAHLHRKI*GPVCVP
Trigger: GGGCACACAGACAGGGCCTCAAATCTTTCTGTGCAG...GTGTGCTGGTACAGATGCGTACACATGCGGAGATGGGATGTGCGCAGTCAGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp AGCATACTGGGAACAAGGTGTGGTCCAGAGAAGTTCTACATGGGCCACTGGAGAACTCTCGCTGGTGGCTaGCTGGGCTGGGGTTTCAGT +
Preference number: 2 (lower is better)
Translates to: SILGTRCGPEKFYMGHWRTLAGG*LGWGFS
Trigger: ACTGAAACCCCAGCCCAGGCAGCCACCAGCGAGAGT...TCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCTTGTTCCCAGTATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp AGCATACTGGGAACAAGGTGTGGTCCAGAGAAGTTCTACATGGGCCACTGGAGAGGTGGCTGCCTGGGCTaGGGTTTCAGTCTTGGGTCT +
Preference number: 2 (lower is better)
Translates to: SILGTRCGPEKFYMGHWRGGCLG*GFSLGS
Trigger: AGACCCAAGACTGAAACCCCAGCCCAGGCAGCCACC...TCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCTTGTTCCCAGTATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp AGCATACTGGGAACAAGGTGTGGTCCAGAGAAGTTCTACATGGGCCACTGGAGATCGCTGGTGGCTGCCTaGGCTGGGGTTTCAGTCTTG +
Preference number: 2 (lower is better)
Translates to: SILGTRCGPEKFYMGHWRSLVAA*AGVSVL
Trigger: CAAGACTGAAACCCCAGCCCAGGCAGCCACCAGCGA...TCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCTTGTTCCCAGTATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp AGGTGTGGTCCAGAGAAGTTCTACATGGGCCACTGGAGAGGGGACCAAAGTCCCCTAGGCTGGGGAAGATaGAGCACTGGCCAAAGGAAT +
Preference number: 2 (lower is better)
Translates to: RCGPEKFYMGHWRGDQSPLGWGR*STGQRN
Trigger: ATTCCTTTGGCCAGTGCTCCATCTTCCCCAGCCTAG...GGGACTTTGGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CAA 90 bp TCTCTACTGCACCCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTaGCTACACACCTGCTCCAAAGATGACCTCTTGACAAGAGCTCCA +
Preference number: 2 (lower is better)
Translates to: SLLHPCPWLSHVCPV*LHTCSKDDLLTRAP
Trigger: TGGAGCTCTTGTCAAGAGGTCATCTTTGGAGCAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGGGTGCAGTAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp AGGACCATTTCTACCTTCTGTAAAAGAACACCTGTTTGGGGTTGCGTGCGGCTTAGCAGCCCCTGTGCCTaGCACCCTCTCAGGTCAGTG +
Preference number: 2 (lower is better)
Translates to: RTISTFCKRTPVWGCVRLSSPCA*HPLRSV
Trigger: CACTGACCTGAGAGGGTGGCAGGCACAGGGGCTGCT...AAGCCGCACGCAACCCCAAACAGGTGTTCTTTTACAGAAGGTAGAAATGGTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp GTGCACGTAGTAGCCAGTGATGTAACCCAGGATGAAGATGATCCAGAAGAGGGCTGGCTATCCCCAGCTTaGCAGAGCACAGCTTCTGGG +
Preference number: 2 (lower is better)
Translates to: VHVVASDVTQDEDDPEEGWLSPA*QSTASG
Trigger: CCCAGAAGCTGTGCTCTGGCAAGCTGGGGATAGCCA...GCCCTCTTCTGGATCATCTTCATCCTGGGTTACATCACTGGCTACTACGTGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146543.9
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TGTGCCTGCCACCCTCTCAGGTCAGTGTGCAGACCTCACAGTTTTCTAGCCACACCTGTGTACTGGAGATaGGGAGCCATGTTGACAGTG +
Preference number: 2 (lower is better)
Translates to: CACHPLRSVCRPHSFLATPVYWR*GAMLTV
Trigger: CACTGTCAACATGGCTCCCCATCTCCAGTACACAGG...TGTGGCTAGAAAACTGTGAGGTCTGCACACTGACCTGAGAGGGTGGCAGGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TCAGTTGGAGTAGCTCTACTGCAATCTCCCACACAAGGACCACTGAAGCTTAGGGGTGGCTGCCTGGGCTaGGGTTTCAGTCTTGGGTCT +
Preference number: 2 (lower is better)
Translates to: SVGVALLQSPTQGPLKLRGGCLG*GFSLGS
Trigger: AGACCCAAGACTGAAACCCCAGCCCAGGCAGCCACC...CCTAAGCTTCAGTGGTCCTTGTGTGGGAGATTGCAGTAGAGCTACTCCAACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TCAGTTGGAGTAGCTCTACTGCAATCTCCCACACAAGGACCACTGAAGCTTAGGTCGCTGGTGGCTGCCTaGGCTGGGGTTTCAGTCTTG +
Preference number: 2 (lower is better)
Translates to: SVGVALLQSPTQGPLKLRSLVAA*AGVSVL
Trigger: CAAGACTGAAACCCCAGCCCAGGCAGCCACCAGCGA...CCTAAGCTTCAGTGGTCCTTGTGTGGGAGATTGCAGTAGAGCTACTCCAACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CACGTAGTAGCCAGTGATGTAACCCAGGATGAAGATGATCCAGAAGAGGGCCACCACCCAGCACCTTCATaGCTATCCCCAGCTTGCCAG +
Preference number: 2 (lower is better)
Translates to: HVVASDVTQDEDDPEEGHHPAPS*LSPACQ
Trigger: CTGGCAAGCTGGGGATAGCCATGAAGGTGCTGGGTG...GTGGCCCTCTTCTGGATCATCTTCATCCTGGGTTACATCACTGGCTACTACGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146543.9
ENSMUST00000182191.8
3UTR-3UTR TCA 90 bp TCCAAAGATGACCTCTTGACAAGAGCTCCACTAGGCCTTAGGGGGTCCTTCACTCTGCACAGAAAGATTTaGGGCCCTGTCTGTGTGCCC +
Preference number: 2 (lower is better)
Translates to: SKDDLLTRAPLGLRGSFTLHRKI*GPVCVP
Trigger: GGGCACACAGACAGGGCCTCAAATCTTTCTGTGCAG...AGTGAAGGACCCCCTAAGGCCTAGTGGAGCTCTTGTCAAGAGGTCATCTTTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR TCA 90 bp CATGAGACACGGCTGCTCACAGGTCCCTTTGAGTGGCTGTGGCAAGTACTCACCAGCCCAGCCCAGGTGTaGGATTCATTGAGATTTTTG +
Preference number: 2 (lower is better)
Translates to: HETRLLTGPFEWLWQVLTSPAQV*DSLRFL
Trigger: CAAAAATCTCAATGAATCTCACACCTGGGCTGGGCT...GGTGAGTACTTGCCACAGCCACTCAAAGGGACCTGTGAGCAGCCGTGTCTCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp TACCAGCACACAGCTGCCATCCCTCGAGCCACAGTGCCTGGTCCTAAGGACCCATTTCCTTCCACATGGTaGCTCCTGCATCAAATACTA +
Preference number: 2 (lower is better)
Translates to: YQHTAAIPRATVPGPKDPFPSTW*LLHQIL
Trigger: TAGTATTTGATGCAGGAGGCACCATGTGGAAGGAAA...TGGGTCCTTAGGACCAGGCACTGTGGCTCGAGGGATGGCAGCTGTGTGCTGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp TCAGTTGGAGTAGCTCTACTGCAATCTCCCACACAAGGACCACTGAAGCTTAGGTGGCTATCCCCAGCTTaGCAGAGCACAGCTTCTGGG +
Preference number: 2 (lower is better)
Translates to: SVGVALLQSPTQGPLKLRWLSPA*QSTASG
Trigger: CCCAGAAGCTGTGCTCTGGCAAGCTGGGGATAGCCA...CCTAAGCTTCAGTGGTCCTTGTGTGGGAGATTGCAGTAGAGCTACTCCAACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TCAGTTGGAGTAGCTCTACTGCAATCTCCCACACAAGGACCACTGAAGCTTAGGCTGGCCTCCTTCCTTTaGCCACTGATAGCAGCAGCC +
Preference number: 2 (lower is better)
Translates to: SVGVALLQSPTQGPLKLRLASFL*PLIAAA
Trigger: GGCTGCTGCTATCAGTGGCCAAAGGAAGGAGGCCAG...CCTAAGCTTCAGTGGTCCTTGTGTGGGAGATTGCAGTAGAGCTACTCCAACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CAA 90 bp TTTCAGTCTTGGGTCTACCCTGTGTACTGGAGATGGGGAGCCATGTaGACAGTGCACACTGGCATCTTCATATGCCCTGGGGTCTGTATG +
Preference number: 2 (lower is better)
Translates to: FQSWVYPVYWRWGAM*TVHTGIFICPGVCM
Trigger: CATACAGACCCCAGGGCATATGAAGATGCCAGTGTGCACTGTCAACATGGCTCCCCATCTCCAGTACACAGGGTAGACCCAAGACTGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp ATCCTGACTGCGCACATCCCATCTCCGCATGTGTACGCATCTGTACCAGCACACCCACATGGTGCCTCCTaGATCAAATACTACTCCTTC +
Preference number: 2 (lower is better)
Translates to: ILTAHIPSPHVYASVPAHPHGAS*IKYYSF
Trigger: GAAGGAGTAGTATTTGATGCAGGAGGCACCATGTGG...GTGTGCTGGTACAGATGCGTACACATGCGGAGATGGGATGTGCGCAGTCAGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp ACTGCACCCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGTTTCCTTCCACATGGTaGCTCCTGCATCAAATACTA +
Preference number: 2 (lower is better)
Translates to: TAPMSLAQPCLPCLATHLFPSTW*LLHQIL
Trigger: TAGTATTTGATGCAGGAGGCACCATGTGGAAGGAAA...CAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGGGTGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CATGTTGACAGTGCACACTGGCATCTTCATATGCCCTGGGGTCTGTATGGAGGACCTGTGTACTGGAGATaGGGAGCCATGTTGACAGTG +
Preference number: 2 (lower is better)
Translates to: HVDSAHWHLHMPWGLYGGPVYWR*GAMLTV
Trigger: CACTGTCAACATGGCTCCCCATCTCCAGTACACAGG...TCCTCCATACAGACCCCAGGGCATATGAAGATGCCAGTGTGCACTGTCAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp AGCATACTGGGAACAAGGTGTGGTCCAGAGAAGTTCTACATGGGCCACTGGAGACTAGGCTGGGGAAGATaGAGCACTGGCCAAAGGAAT +
Preference number: 2 (lower is better)
Translates to: SILGTRCGPEKFYMGHWRLGWGR*STGQRN
Trigger: ATTCCTTTGGCCAGTGCTCCATCTTCCCCAGCCTAG...TCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCTTGTTCCCAGTATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp ATAGGAGCCACAGTCGTTATTCAGGGCCCATCCTGCACAACCAGGAATCTGGAACTAGGCTGGGGAAGATaGAGCACTGGCCAAAGGAAT +
Preference number: 2 (lower is better)
Translates to: IGATVVIQGPSCTTRNLELGWGR*STGQRN
Trigger: ATTCCTTTGGCCAGTGCTCCATCTTCCCCAGCCTAG...TTCCAGATTCCTGGTTGTGCAGGATGGGCCCTGAATAACGACTGTGGCTCCTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CGTGTAGTCCTTTGTAGTCAGACAGATGCTTCGTGGACTGTGCCTCACACATGGCCACATCCTGACCCTTaGGTCTCTGTGTTCTTGGGA +
Preference number: 2 (lower is better)
Translates to: RVVLCSQTDASWTVPHTWPHPDP*VSVFLG
Trigger: TCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGG...CCATGTGTGAGGCACAGTCCACGAAGCATCTGTCTGACTACAAAGGACTACACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp AGCATACTGGGAACAAGGTGTGGTCCAGAGAAGTTCTACATGGGCCACTGGAGACCACATCCTGACCCTTaGGTCTCTGTGTTCTTGGGA +
Preference number: 2 (lower is better)
Translates to: SILGTRCGPEKFYMGHWRPHPDP*VSVFLG
Trigger: TCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGG...TCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCTTGTTCCCAGTATGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CTTGTGCACGTAGTAGCCAGTGATGTAACCCAGGATGAAGATGATCCAGAAGAGCACCCAGCACCTTCATaGCTATCCCCAGCTTGCCAG +
Preference number: 2 (lower is better)
Translates to: LVHVVASDVTQDEDDPEEHPAPS*LSPACQ
Trigger: CTGGCAAGCTGGGGATAGCCATGAAGGTGCTGGGTG...CTCTTCTGGATCATCTTCATCCTGGGTTACATCACTGGCTACTACGTGCACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146543.9
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp TCAGTTGGAGTAGCTCTACTGCAATCTCCCACACAAGGACCACTGAAGCTTAGGGGTGGTAAGCCCCTGTaGCCTGCACAGAAAGATTTG +
Preference number: 2 (lower is better)
Translates to: SVGVALLQSPTQGPLKLRGGKPL*PAQKDL
Trigger: CAAATCTTTCTGTGCAGGGCACAGGGGCTTACCACC...CCTAAGCTTCAGTGGTCCTTGTGTGGGAGATTGCAGTAGAGCTACTCCAACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp CGTGTAGTCCTTTGTAGTCAGACAGATGCTTCGTGGACTGTGCCTCACACATGGCAATTCACAGCATACTaGGAACAAGGTGTGGTCCAG +
Preference number: 2 (lower is better)
Translates to: RVVLCSQTDASWTVPHTWQFTAY*EQGVVQ
Trigger: CTGGACCACACCTTGTTCCCAGTATGCTGTGAATTG...CCATGTGTGAGGCACAGTCCACGAAGCATCTGTCTGACTACAAAGGACTACACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CCA 90 bp TCAGTTGGAGTAGCTCTACTGCAATCTCCCACACAAGGACCACTGAAGCTTAGGCAATTCACAGCATACTaGGAACAAGGTGTGGTCCAG +
Preference number: 2 (lower is better)
Translates to: SVGVALLQSPTQGPLKLRQFTAY*EQGVVQ
Trigger: CTGGACCACACCTTGTTCCCAGTATGCTGTGAATTG...CCTAAGCTTCAGTGGTCCTTGTGTGGGAGATTGCAGTAGAGCTACTCCAACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR GCA 90 bp CGTGTAGTCCTTTGTAGTCAGACAGATGCTTCGTGGACTGTGCCTCACACATGGTTTCCTTCCACATGGTaGCTCCTGCATCAAATACTA +
Preference number: 2 (lower is better)
Translates to: RVVLCSQTDASWTVPHTWFPSTW*LLHQIL
Trigger: TAGTATTTGATGCAGGAGGCACCATGTGGAAGGAAA...CCATGTGTGAGGCACAGTCCACGAAGCATCTGTCTGACTACAAAGGACTACACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CAA 90 bp GGATGTTCTGAATCATGTGGCCTGTGGCCGTGCTGGAGAGTCAGGTaGAACGCAGGCATTCTATTGAACAGTATTTATTTTTCTACAACA +
Preference number: 2 (lower is better)
Translates to: GCSESCGLWPCWRVR*NAGILLNSIYFSTT
Trigger: TGTTGTAGAAAAATAAATACTGTTCAATAGAATGCCTGCGTTCAACCTGACTCTCCAGCACGGCCACAGGCCACATGATTCAGAACATCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
3UTR CCA 72 bp CCGCCTTGCGATGCCCGCCTTGCGGCAGCTCAGGACTaGGGGGTGCGGGTGAGGTGGAGAACACACCACCGT +
Preference number: 3 (lower is better)
Translates to: PPCDARLAAAQD*GVRVRWRTHHR
Trigger: ACGGTGGTGTGTTCTCCACCTCACCCGCACCCCCCAGTCCTGAGCTGCCGCAAGGCGGGCATCGCAAGGCGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp GTGAGCCCACACCAACGATACGGGGAGGTTCCCGAGTaGGCATGGGTGGGGAAGCGGCGGGCTAGATCGGGA +
Preference number: 3 (lower is better)
Translates to: VSPHQRYGEVPE*AWVGKRRARSG
Trigger: TCCCGATCTAGCCCGCCGCTTCCCCACCCATGCCCACTCGGGAACCTCCCCGTATCGTTGGTGTGGGCTCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
3UTR CCA 72 bp GCTGCCAGGAGTGGGCTGGGAGCACCTGACCCAGTGTaGAGTGCAGAATGTGGCTGGAAGCCCGCCTCACTG +
Preference number: 3 (lower is better)
Translates to: AARSGLGAPDPV*SAECGWKPASL
Trigger: CAGTGAGGCGGGCTTCCAGCCACATTCTGCACTCCACACTGGGTCAGGTGCTCCCAGCCCACTCCTGGCAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp GCTAGGGACGGGCCTAGGCTGGGGAAGATGGAGCACTaGCCAAAGGAATCGGGGCACAAAGCCCAACCTGGG +
Preference number: 3 (lower is better)
Translates to: ARDGPRLGKMEH*PKESGHKAQPG
Trigger: CCCAGGTTGGGCTTTGTGCCCCGATTCCTTTGGCCAGTGCTCCATCTTCCCCAGCCTAGGCCCGTCCCTAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp GGGAGAAGCAGGGGTTGGCTTCTGGCCTCCTTCCTTTaGCCACTGATAGCAGCAGCCCCTGTGCCTGCCACC +
Preference number: 3 (lower is better)
Translates to: GRSRGWLLASFL*PLIAAAPVPAT
Trigger: GGTGGCAGGCACAGGGGCTGCTGCTATCAGTGGCCAAAGGAAGGAGGCCAGAAGCCAACCCCTGCTTCTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp GGAGCACCTGACCCAGTGTGGAGTGCAGAATGTGGCTaGAAGCCCGCCTCACTGTCAGCCCGGGACTACAGG +
Preference number: 3 (lower is better)
Translates to: GAPDPVWSAECG*KPASLSARDYR
Trigger: CCTGTAGTCCCGGGCTGACAGTGAGGCGGGCTTCCAGCCACATTCTGCACTCCACACTGGGTCAGGTGCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp ACCAACGATACGGGGAGGTTCCCGAGTGGGCATGGGTaGGGAAGCGGCGGGCTAGATCGGGAAAAGATGGGC +
Preference number: 3 (lower is better)
Translates to: TNDTGRFPSGHG*GSGGLDREKMG
Trigger: GCCCATCTTTTCCCGATCTAGCCCGCCGCTTCCCCACCCATGCCCACTCGGGAACCTCCCCGTATCGTTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp GGACCCAGCAGCTGCACAGAGGACTTGGTGGCCCCGTGCCTTGCCATCTGGCTGTCTGGCCTCCTTCCTTaGGCCACTGATAGCAGCAGC +
Preference number: 3 (lower is better)
Translates to: GPSSCTEDLVAPCLAIWLSGLLP*ATDSSS
Trigger: GCTGCTGCTATCAGTGGCCAAAGGAAGGAGGCCAGA...CAGCCAGATGGCAAGGCACGGGGCCACCAAGTCCTCTGTGCAGCTGCTGGGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR TCA 72 bp CCGCCTCACTGTCAGCCCGGGACTACAGGAGACGCCTaGGGACAGTGCTCCCGTTCCTTTCCTTCCACATGG +
Preference number: 3 (lower is better)
Translates to: PPHCQPGTTGDA*GQCSRSFPSTW
Trigger: CCATGTGGAAGGAAAGGAACGGGAGCACTGTCCTCAGGCGTCTCCTGTAGTCCCGGGCTGACAGTGAGGCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR TCA 72 bp CAGAGGACTTGGTGGCCCCGTGCCTTGCCATCTGGCTaGGAAGAGAACCAGACCCTCAGCCTTCCCCCTCGA +
Preference number: 3 (lower is better)
Translates to: QRTWWPRALPSG*EENQTLSLPPR
Trigger: TCGAGGGGGAAGGCTGAGGGTCTGGTTCTCTTCTCAGCCAGATGGCAAGGCACGGGGCCACCAAGTCCTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 72 bp AGCAGCCCCTGTGCCTGCCACCCTCTCAGGTCAGTGTaGAGACCTCACAGTTTTCTAGCCACAGCCCGCCAG +
Preference number: 3 (lower is better)
Translates to: SSPCACHPLRSV*RPHSFLATARQ
Trigger: CTGGCGGGCTGTGGCTAGAAAACTGTGAGGTCTGCACACTGACCTGAGAGGGTGGCAGGCACAGGGGCTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 72 bp CAGCAGCTGCACAGAGGACTTGGTGGCCCCGTGCCTTaGCATCTGGCTGAGAAGAGAACCAGACCCTCAGCC +
Preference number: 3 (lower is better)
Translates to: QQLHRGLGGPVP*HLAEKRTRPSA
Trigger: GGCTGAGGGTCTGGTTCTCTTCTCAGCCAGATGGCAAGGCACGGGGCCACCAAGTCCTCTGTGCAGCTGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 72 bp GGACCCAGCAGCTGCACAGAGGACTTGGTGGCCCCGTaGCTTGCCATCTGGCTGAGAAGAGAACCAGACCCT +
Preference number: 3 (lower is better)
Translates to: GPSSCTEDLVAP*LAIWLRREPDP
Trigger: AGGGTCTGGTTCTCTTCTCAGCCAGATGGCAAGGCACGGGGCCACCAAGTCCTCTGTGCAGCTGCTGGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp TGCACAGAGGACTTGGTGGCCCCGTGCCTTGCCATCTaGCTGAGAAGAGAACCAGACCCTCAGCCTTCCCCC +
Preference number: 3 (lower is better)
Translates to: CTEDLVAPCLAI*LRREPDPQPSP
Trigger: GGGGGAAGGCTGAGGGTCTGGTTCTCTTCTCAGCCAGATGGCAAGGCACGGGGCCACCAAGTCCTCTGTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp TCTCGCTGGTGGCTGCCTGGGCTGGGGTTTCAGTCTTaGGTCTACCCTGTGTACTGGAGATGGGGAGCCATG +
Preference number: 3 (lower is better)
Translates to: SRWWLPGLGFQS*VYPVYWRWGAM
Trigger: CATGGCTCCCCATCTCCAGTACACAGGGTAGACCCAAGACTGAAACCCCAGCCCAGGCAGCCACCAGCGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp CCAGCCTGTGTGACTCTCGCTGGTGGCTGCCTGGGCTaGGGTTTCAGTCTTGGGTCTACCCTGTGTACTGGA +
Preference number: 3 (lower is better)
Translates to: PACVTLAGGCLG*GFSLGSTLCTG
Trigger: TCCAGTACACAGGGTAGACCCAAGACTGAAACCCCAGCCCAGGCAGCCACCAGCGAGAGTCACACAGGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp CTGTGGAGGAGGGTCAGGCCTGGAACAAGTCATGCCTaGCTGGGCAGTGCTAGTGGAGAGAGTCTGTCACCC +
Preference number: 3 (lower is better)
Translates to: LWRRVRPGTSHA*LGSASGESLSP
Trigger: GGGTGACAGACTCTCTCCACTAGCACTGCCCAGCCAGGCATGACTTGTTCCAGGCCTGACCCTCCTCCACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 72 bp CTTCCTTTGGCCACTGATAGCAGCAGCCCCTGTGCCTaGCACCCTCTCAGGTCAGTGTGCAGACCTCACAGT +
Preference number: 3 (lower is better)
Translates to: LPLATDSSSPCA*HPLRSVCRPHS
Trigger: ACTGTGAGGTCTGCACACTGACCTGAGAGGGTGGCAGGCACAGGGGCTGCTGCTATCAGTGGCCAAAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp GTATGGAGGAGTGTCTGCACAAATGGCCTGTGTACATaGGAGGGAATCCCCAGGGCTGGGAGTGGGGCAGCA +
Preference number: 3 (lower is better)
Translates to: VWRSVCTNGLCT*EGIPRAGSGAA
Trigger: TGCTGCCCCACTCCCAGCCCTGGGGATTCCCTCCCATGTACACAGGCCATTTGTGCAGACACTCCTCCATAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp TGCCCTGGGGTCTGTATGGAGGAGTGTCTGCACAAATaGCCTGTGTACATGGGAGGGAATCCCCAGGGCTGG +
Preference number: 3 (lower is better)
Translates to: CPGVCMEECLHK*PVYMGGNPQGW
Trigger: CCAGCCCTGGGGATTCCCTCCCATGTACACAGGCCATTTGTGCAGACACTCCTCCATACAGACCCCAGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp CTTAGCCTAGTCTCCAGCCTGTGTGACTCTCGCTGGTaGCTGCCTGGGCTGGGGTTTCAGTCTTGGGTCTAC +
Preference number: 3 (lower is better)
Translates to: LSLVSSLCDSRW*LPGLGFQSWVY
Trigger: GTAGACCCAAGACTGAAACCCCAGCCCAGGCAGCCACCAGCGAGAGTCACACAGGCTGGAGACTAGGCTAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp GCTCCCAGGGCAGCATCTGCCTTCCACGGCTGTGCTTaGAACTGTAGTGCTGGTCGTTGTTGGCACATCTGC +
Preference number: 3 (lower is better)
Translates to: APRAASAFHGCA*NCSAGRCWHIC
Trigger: GCAGATGTGCCAACAACGACCAGCACTACAGTTCCAAGCACAGCCGTGGAAGGCAGATGCTGCCCTGGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp GAGGACTTGGTGGCCCCGTGCCTTGCCATCTGGCTGAGAAGAGAACCAGACCCTGCTGGGGTTTCAGTCTaGGGTCTACCCTGTGTACTG +
Preference number: 3 (lower is better)
Translates to: EDLVAPCLAIWLRREPDPAGVSV*GLPCVL
Trigger: CAGTACACAGGGTAGACCCAAGACTGAAACCCCAGC...AGGGTCTGGTTCTCTTCTCAGCCAGATGGCAAGGCACGGGGCCACCAAGTCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp CAGGGGTTGGCTTCTGGCCTCCTTCCTTTGGCCACTGATAGCAGCAGCCCCTGTCCTGCACAGAAAGATTaGAGGCCCTGTCTGTGTGCC +
Preference number: 3 (lower is better)
Translates to: QGLASGLLPLATDSSSPCPAQKD*RPCLCA
Trigger: GGCACACAGACAGGGCCTCAAATCTTTCTGTGCAGG...ACAGGGGCTGCTGCTATCAGTGGCCAAAGGAAGGAGGCCAGAAGCCAACCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp ACTGCACCCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGGCTGGGGTTTCAGTCTaGGGTCTACCCTGTGTACTG +
Preference number: 3 (lower is better)
Translates to: TAPMSLAQPCLPCLATHLAGVSV*GLPCVL
Trigger: CAGTACACAGGGTAGACCCAAGACTGAAACCCCAGC...CAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGGGTGCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp CATGGGCCACTGGAGAGGGGACCAAAGTCCCCATCGAGTCACAGTGCCCTTGTTGCTGGGGTTTCAGTCTaGGGTCTACCCTGTGTACTG +
Preference number: 3 (lower is better)
Translates to: HGPLERGPKSPSSHSALVAGVSV*GLPCVL
Trigger: CAGTACACAGGGTAGACCCAAGACTGAAACCCCAGC...AACAAGGGCACTGTGACTCGATGGGGACTTTGGTCCCCTCTCCAGTGGCCCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp CCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGCTCCAAATCTGGCCTCCTTCCTTaGGCCACTGATAGCAGCAGC +
Preference number: 3 (lower is better)
Translates to: PCPWLSHVCPVLLHTCSKSGLLP*ATDSSS
Trigger: GCTGCTGCTATCAGTGGCCAAAGGAAGGAGGCCAGA...TTTGGAGCAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR TCA 72 bp TGGTCCAGTAAGGAGGGAACAGGTCCAGCCACATCCTaGCCCTTGGGTCTCTGTGTTCTTGGGAGAAGGCCC +
Preference number: 3 (lower is better)
Translates to: WSSKEGTGPATS*PLGLCVLGRRP
Trigger: GGGCCTTCTCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGGCTGGACCTGTTCCCTCCTTACTGGACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp TCCAGCCACATCCTGACCCTTGGGTCTCTGTGTTCTTaGGAGAAGGCCCAGTCAGGAGGGGCACATTCCAAG +
Preference number: 3 (lower is better)
Translates to: SSHILTLGSLCS*EKAQSGGAHSK
Trigger: CTTGGAATGTGCCCCTCCTGACTGGGCCTTCTCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGGCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp GTAAGGAGGGAACAGGTCCAGCCACATCCTGACCCTTaGGTCTCTGTGTTCTTGGGAGAAGGCCCAGTCAGG +
Preference number: 3 (lower is better)
Translates to: VRREQVQPHPDP*VSVFLGEGPVR
Trigger: CCTGACTGGGCCTTCTCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGGCTGGACCTGTTCCCTCCTTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp GTCCAGAGAAGTTCTACATGGGCCACTGGAGAGGGGACCAAAGTCCCCATCGAGGCTGGGGTTTCAGTCTaGGGTCTACCCTGTGTACTG +
Preference number: 3 (lower is better)
Translates to: VQRSSTWATGEGTKVPIEAGVSV*GLPCVL
Trigger: CAGTACACAGGGTAGACCCAAGACTGAAACCCCAGC...CTCGATGGGGACTTTGGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp AGGTGTGGTCCAGAGAAGTTCTACATGGGCCACTGGAGAGGGGACCAAAGTCCCCCTGCACAGAAAGATTaGAGGCCCTGTCTGTGTGCC +
Preference number: 3 (lower is better)
Translates to: RCGPEKFYMGHWRGDQSPPAQKD*RPCLCA
Trigger: GGCACACAGACAGGGCCTCAAATCTTTCTGTGCAGG...GGGACTTTGGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp ACCTGCTCCAAAGATGACCTCTTGACAAGAGCTCCACTAGGCCTTAGGGGGTCCTCTGGCCTCCTTCCTTaGGCCACTGATAGCAGCAGC +
Preference number: 3 (lower is better)
Translates to: TCSKDDLLTRAPLGLRGSSGLLP*ATDSSS
Trigger: GCTGCTGCTATCAGTGGCCAAAGGAAGGAGGCCAGA...GGACCCCCTAAGGCCTAGTGGAGCTCTTGTCAAGAGGTCATCTTTGGAGCAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp CCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGCTCCAAAACCGTCTTACCTCATTaGGAGCCTGTGAGTGGAGGG +
Preference number: 3 (lower is better)
Translates to: PCPWLSHVCPVLLHTCSKTVLPH*EPVSGG
Trigger: CCCTCCACTCACAGGCTCCAAATGAGGTAAGACGGT...TTTGGAGCAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR TCA 72 bp GGGTCTACCCTGTGTACTGGAGATGGGGAGCCATGTTaGCAGTGCACACTGGCATCTTCATATGCCCTGGGG +
Preference number: 3 (lower is better)
Translates to: GSTLCTGDGEPC*QCTLASSYALG
Trigger: CCCCAGGGCATATGAAGATGCCAGTGTGCACTGTCAACATGGCTCCCCATCTCCAGTACACAGGGTAGACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 72 bp TGTAATCTTCTTAGAGCTTGTTTCCAGGCACCGTGCTaGCGCCATGCTCCCAGGGCAGCATCTGCCTTCCAC +
Preference number: 3 (lower is better)
Translates to: CNLLRACFQAPC*RHAPRAASAFH
Trigger: GTGGAAGGCAGATGCTGCCCTGGGAGCATGGCGGCAGCACGGTGCCTGGAAACAAGCTCTAAGAAGATTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 72 bp GAGTGTAATCTTCTTAGAGCTTGTTTCCAGGCACCGTaGTGCCGCCATGCTCCCAGGGCAGCATCTGCCTTC +
Preference number: 3 (lower is better)
Translates to: ECNLLRACFQAP*CRHAPRAASAF
Trigger: GAAGGCAGATGCTGCCCTGGGAGCATGGCGGCAGCACGGTGCCTGGAAACAAGCTCTAAGAAGATTACACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp TGTGGTCCAGAGAAGTTCTACATGGGCCACTGGAGAGGGGACCAAAGTCCCCATCCTGCACAGAAAGATTaGAGGCCCTGTCTGTGTGCC +
Preference number: 3 (lower is better)
Translates to: CGPEKFYMGHWRGDQSPHPAQKD*RPCLCA
Trigger: GGCACACAGACAGGGCCTCAAATCTTTCTGTGCAGG...ATGGGGACTTTGGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 72 bp TCTCTACTGCACCCATGTCCCTGGCTCAGCCATGTCTaGCCTGTCTTGCTACACACCTGCTCCAAAGATGAC +
Preference number: 3 (lower is better)
Translates to: SLLHPCPWLSHV*PVLLHTCSKDD
Trigger: GTCATCTTTGGAGCAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGGGTGCAGTAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp ACAAGGTGTGGTCCAGAGAAGTTCTACATGGGCCACTaGAGAGGGGACCAAAGTCCCCATCGAGTCACAGTG +
Preference number: 3 (lower is better)
Translates to: TRCGPEKFYMGH*RGDQSPHRVTV
Trigger: CACTGTGACTCGATGGGGACTTTGGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp TACTGGGAACAAGGTGTGGTCCAGAGAAGTTCTACATaGGCCACTGGAGAGGGGACCAAAGTCCCCATCGAG +
Preference number: 3 (lower is better)
Translates to: YWEQGVVQRSST*ATGEGTKVPIE
Trigger: CTCGATGGGGACTTTGGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCTTGTTCCCAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp GTCCGTGTAGTCCTTTGTAGTCAGACAGATGCTTCGTaGACTGTGCCTCACACATGGCCCTGCAGGCTCCAT +
Preference number: 3 (lower is better)
Translates to: VRVVLCSQTDAS*TVPHTWPCRLH
Trigger: ATGGAGCCTGCAGGGCCATGTGTGAGGCACAGTCCACGAAGCATCTGTCTGACTACAAAGGACTACACGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp AAATGGCCTGTGTACATGGGAGGGAATCCCCAGGGCTaGGAGTGGGGCAGCATTTATTTGCACTTGTGCACG +
Preference number: 3 (lower is better)
Translates to: KWPVYMGGNPQG*EWGSIYLHLCT
Trigger: CGTGCACAAGTGCAAATAAATGCTGCCCCACTCCCAGCCCTGGGGATTCCCTCCCATGTACACAGGCCATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
3UTR GCA 72 bp TGCATCAAATACTACTCCTTCCTGTCACCTCTCTACTaGACCCATGTCCCTGGCTCAGCCATGTCTGCCCTG +
Preference number: 3 (lower is better)
Translates to: CIKYYSFLSPLY*THVPGSAMSAL
Trigger: CAGGGCAGACATGGCTGAGCCAGGGACATGGGTGCAGTAGAGAGGTGACAGGAAGGAGTAGTATTTGATGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 72 bp TCTCCTGTCTCCTGTCCTCATGGATCACTCAGTAACTaGTGGGGATGTTCTGAATCATGTGGCCTGTGGCCG +
Preference number: 3 (lower is better)
Translates to: SPVSCPHGSLSN*WGCSESCGLWP
Trigger: CGGCCACAGGCCACATGATTCAGAACATCCCCAGCAGTTACTGAGTGATCCATGAGGACAGGAGACAGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
3UTR CCA 72 bp GGGTTTCAGTCTTGGGTCTACCCTGTGTACTGGAGATaGGGAGCCATGTTGACAGTGCACACTGGCATCTTC +
Preference number: 3 (lower is better)
Translates to: GFQSWVYPVYWR*GAMLTVHTGIF
Trigger: GAAGATGCCAGTGTGCACTGTCAACATGGCTCCCCATCTCCAGTACACAGGGTAGACCCAAGACTGAAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp CATGTTGACAGTGCACACTGGCATCTTCATATGCCCTGGGGTCTGTATGGAGGAGCTGGGGTTTCAGTCTaGGGTCTACCCTGTGTACTG +
Preference number: 3 (lower is better)
Translates to: HVDSAHWHLHMPWGLYGGAGVSV*GLPCVL
Trigger: CAGTACACAGGGTAGACCCAAGACTGAAACCCCAGC...TCCTCCATACAGACCCCAGGGCATATGAAGATGCCAGTGTGCACTGTCAACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 72 bp CTACCTTCTGTAAAAGAACACCTGTTTGGGGTTGCGTaGGGCTTTCATCCTAAGGCCGTGCGAGAGCCGTTA +
Preference number: 3 (lower is better)
Translates to: LPSVKEHLFGVA*GFHPKAVREPL
Trigger: TAACGGCTCTCGCACGGCCTTAGGATGAAAGCCGCACGCAACCCCAAACAGGTGTTCTTTTACAGAAGGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp TGCACACTGGCATCTTCATATGCCCTGGGGTCTGTATaGAGGAGTGTCTGCACAAATGGCCTGTGTACATGG +
Preference number: 3 (lower is better)
Translates to: CTLASSYALGSV*RSVCTNGLCTW
Trigger: CCATGTACACAGGCCATTTGTGCAGACACTCCTCCATACAGACCCCAGGGCATATGAAGATGCCAGTGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CCA 72 bp CACGGCTGTGCTTGGAACTGTAGTGCTGGTCGTTGTTaGCACATCTGCGCCTTGGCCAAGGAAGTTATCTAT +
Preference number: 3 (lower is better)
Translates to: HGCAWNCSAGRC*HICALAKEVIY
Trigger: ATAGATAACTTCCTTGGCCAAGGCGCAGATGTGCCAACAACGACCAGCACTACAGTTCCAAGCACAGCCGTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp AGGACCATTTCTACCTTCTGTAAAAGAACACCTGTTTGGGGTTGCGTGCGGCTTACCGTCTTACCTCATTaGGAGCCTGTGAGTGGAGGG +
Preference number: 3 (lower is better)
Translates to: RTISTFCKRTPVWGCVRLTVLPH*EPVSGG
Trigger: CCCTCCACTCACAGGCTCCAAATGAGGTAAGACGGT...AAGCCGCACGCAACCCCAAACAGGTGTTCTTTTACAGAAGGTAGAAATGGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR-3UTR CAA 90 bp CGTGTAGTCCTTTGTAGTCAGACAGATGCTTCGTGGACTGTGCCTCACACATGGTCCAAAGATGACCTCTaGACAAGAGCTCCACTAGGC +
Preference number: 3 (lower is better)
Translates to: RVVLCSQTDASWTVPHTWSKDDL*TRAPLG
Trigger: GCCTAGTGGAGCTCTTGTCAAGAGGTCATCTTTGGA...CCATGTGTGAGGCACAGTCCACGAAGCATCTGTCTGACTACAAAGGACTACACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 72 bp AAAATAGGAGCCACAGTCGTTATTCAGGGCCCATCCTaGACAACCAGGAATCTGGAAGGCCAAAAGACCAGG +
Preference number: 3 (lower is better)
Translates to: KIGATVVIQGPS*TTRNLEGQKTR
Trigger: CCTGGTCTTTTGGCCTTCCAGATTCCTGGTTGTGCAGGATGGGCCCTGAATAACGACTGTGGCTCCTATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR GCA 72 bp AGTGCTCCCGTTCCTTTCCTTCCACATGGTGCCTCCTaGATCAAATACTACTCCTTCCTGTCACCTCTCTAC +
Preference number: 3 (lower is better)
Translates to: SAPVPFLPHGAS*IKYYSFLSPLY
Trigger: GTAGAGAGGTGACAGGAAGGAGTAGTATTTGATGCAGGAGGCACCATGTGGAAGGAAAGGAACGGGAGCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CAA 72 bp AGGGAGAAGCAGGGGTTGGCTTCTGGCCTCCTTCCTTaGGCCACTGATAGCAGCAGCCCCTGTGCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: REKQGLASGLLP*ATDSSSPCACH
Trigger: GTGGCAGGCACAGGGGCTGCTGCTATCAGTGGCCAAAGGAAGGAGGCCAGAAGCCAACCCCTGCTTCTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CAA 72 bp CTCTCGCTGGTGGCTGCCTGGGCTGGGGTTTCAGTCTaGGGTCTACCCTGTGTACTGGAGATGGGGAGCCAT +
Preference number: 4 (lower is better)
Translates to: LSLVAAWAGVSV*GLPCVLEMGSH
Trigger: ATGGCTCCCCATCTCCAGTACACAGGGTAGACCCAAGACTGAAACCCCAGCCCAGGCAGCCACCAGCGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
CDS-3UTR GCA 90 bp ACCCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTTGCTACACACCTGCTCCATGGCTATCCCCAGCTTaGCAGAGCACAGCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: THVPGSAMSALSCYTPAPWLSPA*QSTASG
Trigger: CCCAGAAGCTGTGCTCTGGCAAGCTGGGGATAGCCA...TGGAGCAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
CDS-3UTR GCA 90 bp CCCAGGATGAAGATGATCCAGAAGAGGGCCACTCCACCCAGCACCTTCATGGCTCTATCTGCTCAAAGGTaGCGTGGGCACCTGGACGGG +
Preference number: 4 (lower is better)
Translates to: PRMKMIQKRATPPSTFMALSAQR*RGHLDG
Trigger: CCCGTCCAGGTGCCCACGGCACCTTTGAGCAGATAG...AGCCATGAAGGTGCTGGGTGGAGTGGCCCTCTTCTGGATCATCTTCATCCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146543.9
ENSMUST00000182191.8
CDS-3UTR CCA 90 bp AGGAGTGTCTGCACAAATGGCCTGTGTACATGGGAGGGAATCCCCAGGGCTGGGCACCCAGCACCTTCATaGCTATCCCCAGCTTGCCAG +
Preference number: 4 (lower is better)
Translates to: RSVCTNGLCTWEGIPRAGHPAPS*LSPACQ
Trigger: CTGGCAAGCTGGGGATAGCCATGAAGGTGCTGGGTG...CCCAGCCCTGGGGATTCCCTCCCATGTACACAGGCCATTTGTGCAGACACTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
CDS-3UTR CCA 90 bp TACAGGAGACGCCTGAGGACAGTGCTCCCGTTCCTTTCCTTCCACATGGTGCCTAGCTGGTCAGGTCAGTaGGAGCTGCTGGCCTGTTGG +
Preference number: 4 (lower is better)
Translates to: YRRRLRTVLPFLSFHMVPSWSGQ*ELLACW
Trigger: CCAACAGGCCAGCAGCTCCCACTGACCTGACCAGCT...AGGCACCATGTGGAAGGAAAGGAACGGGAGCACTGTCCTCAGGCGTCTCCTGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
CDS-3UTR CCA 90 bp TGGGAACAAGGTGTGGTCCAGAGAAGTTCTACATGGGCCACTGGAGAGGGGACCCACCCAGCACCTTCATaGCTATCCCCAGCTTGCCAG +
Preference number: 4 (lower is better)
Translates to: WEQGVVQRSSTWATGEGTHPAPS*LSPACQ
Trigger: CTGGCAAGCTGGGGATAGCCATGAAGGTGCTGGGTG...GGTCCCCTCTCCAGTGGCCCATGTAGAACTTCTCTGGACCACACCTTGTTCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
CDS-3UTR CCA 90 bp CATGAGACACGGCTGCTCACAGGTCCCTTTGAGTGGCTGTGGCAAGTACTCACCCACCCAGCACCTTCATaGCTATCCCCAGCTTGCCAG +
Preference number: 4 (lower is better)
Translates to: HETRLLTGPFEWLWQVLTHPAPS*LSPACQ
Trigger: CTGGCAAGCTGGGGATAGCCATGAAGGTGCTGGGTG...GGTGAGTACTTGCCACAGCCACTCAAAGGGACCTGTGAGCAGCCGTGTCTCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
CDS-3UTR CCA 90 bp GGGAACAGGTCCAGCCACATCCTGACCCTTGGGTCTCTGTGTTCTTGGGAGAAGCACCCAGCACCTTCATaGCTATCCCCAGCTTGCCAG +
Preference number: 4 (lower is better)
Translates to: GNRSSHILTLGSLCSWEKHPAPS*LSPACQ
Trigger: CTGGCAAGCTGGGGATAGCCATGAAGGTGCTGGGTG...CTTCTCCCAAGAACACAGAGACCCAAGGGTCAGGATGTGGCTGGACCTGTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
CDS-3UTR GCA 90 bp CCCAGGATGAAGATGATCCAGAAGAGGGCCACTCCACCCAGCACCTTCATGGCTCAGGTCAGTGGGAGCTaGTGGCCTGTTGGAACTGTA +
Preference number: 4 (lower is better)
Translates to: PRMKMIQKRATPPSTFMAQVSGS*WPVGTV
Trigger: TACAGTTCCAACAGGCCAGCAGCTCCCACTGACCTG...AGCCATGAAGGTGCTGGGTGGAGTGGCCCTCTTCTGGATCATCTTCATCCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146543.9
ENSMUST00000182191.8
CDS-3UTR CCA 90 bp GATGTAACCCAGGATGAAGATGATCCAGAAGAGGGCCACTCCACCCAGCACCTTAGCTGGTCAGGTCAGTaGGAGCTGCTGGCCTGTTGG +
Preference number: 4 (lower is better)
Translates to: DVTQDEDDPEEGHSTQHLSWSGQ*ELLACW
Trigger: CCAACAGGCCAGCAGCTCCCACTGACCTGACCAGCT...AAGGTGCTGGGTGGAGTGGCCCTCTTCTGGATCATCTTCATCCTGGGTTACATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146543.9
ENSMUST00000182191.8
CDS-3UTR CCA 90 bp TCCTCACATGGTCCAGTAAGGAGGGAACAGGTCCAGCCACATCCTGACCCTTGGGGGCTTGAACAAAGCTaGTCAGGTCAGTGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: SSHGPVRREQVQPHPDPWGLEQS*SGQWEL
Trigger: CAGCTCCCACTGACCTGACCAGCTTTGTTCAAGCCC...CCAAGGGTCAGGATGTGGCTGGACCTGTTCCCTCCTTACTGGACCATGTGAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
CDS-3UTR GCA 90 bp TATGCCCTGGGGTCTGTATGGAGGAGTGTCTGCACAAATGGCCTGTGTACATGGTGGCTATCCCCAGCTTaGCAGAGCACAGCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: YALGSVWRSVCTNGLCTWWLSPA*QSTASG
Trigger: CCCAGAAGCTGTGCTCTGGCAAGCTGGGGATAGCCA...CCATGTACACAGGCCATTTGTGCAGACACTCCTCCATACAGACCCCAGGGCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
CDS-3UTR GCA 90 bp TGTATGGAGGAGTGTCTGCACAAATGGCCTGTGTACATGGGAGGGAATCCCCAGTGGCTATCCCCAGCTTaGCAGAGCACAGCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: CMEECLHKWPVYMGGNPQWLSPA*QSTASG
Trigger: CCCAGAAGCTGTGCTCTGGCAAGCTGGGGATAGCCA...CTGGGGATTCCCTCCCATGTACACAGGCCATTTGTGCAGACACTCCTCCATACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
3UTR CAA 72 bp TGGGTCTACCCTGTGTACTGGAGATGGGGAGCCATGTaGACAGTGCACACTGGCATCTTCATATGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: WVYPVYWRWGAM*TVHTGIFICPG
Trigger: CCCAGGGCATATGAAGATGCCAGTGTGCACTGTCAACATGGCTCCCCATCTCCAGTACACAGGGTAGACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CAA 72 bp CACCCATGTCCCTGGCTCAGCCATGTCTGCCCTGTCTaGCTACACACCTGCTCCAAAGATGACCTCTTGACA +
Preference number: 4 (lower is better)
Translates to: HPCPWLSHVCPV*LHTCSKDDLLT
Trigger: TGTCAAGAGGTCATCTTTGGAGCAGGTGTGTAGCAAGACAGGGCAGACATGGCTGAGCCAGGGACATGGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
CDS-3UTR GCA 90 bp CGTGTAGTCCTTTGTAGTCAGACAGATGCTTCGTGGACTGTGCCTCACACATGGTGGCTATCCCCAGCTTaGCAGAGCACAGCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: RVVLCSQTDASWTVPHTWWLSPA*QSTASG
Trigger: CCCAGAAGCTGTGCTCTGGCAAGCTGGGGATAGCCA...CCATGTGTGAGGCACAGTCCACGAAGCATCTGTCTGACTACAAAGGACTACACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
CDS-3UTR GCA 90 bp GGAGTGGGGCAGCATTTATTTGCACTTGTGCACGTAGTAGCCAGTGATGTAACCCTATCTGCTCAAAGGTaGCGTGGGCACCTGGACGGG +
Preference number: 4 (lower is better)
Translates to: GVGQHLFALVHVVASDVTLSAQR*RGHLDG
Trigger: CCCGTCCAGGTGCCCACGGCACCTTTGAGCAGATAG...GGTTACATCACTGGCTACTACGTGCACAAGTGCAAATAAATGCTGCCCCACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146543.9
ENSMUST00000182191.8
CDS-3UTR CCA 90 bp GTAGCCAGTGATGTAACCCAGGATGAAGATGATCCAGAAGAGGGCCACTCCACCGGGCTTGAACAAAGCTaGTCAGGTCAGTGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: VASDVTQDEDDPEEGHSTGLEQS*SGQWEL
Trigger: CAGCTCCCACTGACCTGACCAGCTTTGTTCAAGCCC...GGTGGAGTGGCCCTCTTCTGGATCATCTTCATCCTGGGTTACATCACTGGCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146543.9
ENSMUST00000182191.8
3UTR CAA 72 bp CCTGTCTTGCTACACACCTGCTCCAAAGATGACCTCTaGACAAGAGCTCCACTAGGCCTTAGGGGGTCCTTC +
Preference number: 4 (lower is better)
Translates to: PVLLHTCSKDDL*TRAPLGLRGSF
Trigger: GAAGGACCCCCTAAGGCCTAGTGGAGCTCTTGTCAAGAGGTCATCTTTGGAGCAGGTGTGTAGCAAGACAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CAA 72 bp ACCAGACCCTCAGCCTTCCCCCTCGACACCTTCTCGTaGGTGACCTCTGACCTTAAAGGACCATTTCTACCT +
Preference number: 4 (lower is better)
Translates to: TRPSAFPLDTFS*VTSDLKGPFLP
Trigger: AGGTAGAAATGGTCCTTTAAGGTCAGAGGTCACCAACGAGAAGGTGTCGAGGGGGAAGGCTGAGGGTCTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
3UTR CAA 72 bp CTGTTCTCCATGAGACACGGCTGCTCACAGGTCCCTTaGAGTGGCTGTGGCAAGTACTCACCTACTAAGTGT +
Preference number: 4 (lower is better)
Translates to: LFSMRHGCSQVP*SGCGKYSPTKC
Trigger: ACACTTAGTAGGTGAGTACTTGCCACAGCCACTCAAAGGGACCTGTGAGCAGCCGTGTCTCATGGAGAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000143047.8
ENSMUST00000182151.8
ENSMUST00000182191.8
CDS-3UTR TCA 90 bp AGGACCATTTCTACCTTCTGTAAAAGAACACCTGTTTGGGGTTGCGTGCGGCTTTGGACGGGCTGGGCTTaGACAAAGCTGGTCAGGTCA +
Preference number: 4 (lower is better)
Translates to: RTISTFCKRTPVWGCVRLWTGWA*TKLVRS
Trigger: TGACCTGACCAGCTTTGTTCAAGCCCAGCCCGTCCA...AAGCCGCACGCAACCCCAAACAGGTGTTCTTTTACAGAAGGTAGAAATGGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
CDS-3UTR TCA 90 bp TTTGCACTTGTGCACGTAGTAGCCAGTGATGTAACCCAGGATGAAGATGATCCATGGACGGGCTGGGCTTaGACAAAGCTGGTCAGGTCA +
Preference number: 4 (lower is better)
Translates to: FALVHVVASDVTQDEDDPWTGWA*TKLVRS
Trigger: TGACCTGACCAGCTTTGTTCAAGCCCAGCCCGTCCA...TGGATCATCTTCATCCTGGGTTACATCACTGGCTACTACGTGCACAAGTGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146543.9
ENSMUST00000182191.8
CDS-3UTR CCA 90 bp TTTGCACTTGTGCACGTAGTAGCCAGTGATGTAACCCAGGATGAAGATGATCCAGTCAGTGGGAGCTGCTaGCCTGTTGGAACTGTACCT +
Preference number: 4 (lower is better)
Translates to: FALVHVVASDVTQDEDDPVSGSC*PVGTVP
Trigger: AGGTACAGTTCCAACAGGCCAGCAGCTCCCACTGAC...TGGATCATCTTCATCCTGGGTTACATCACTGGCTACTACGTGCACAAGTGCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146543.9
ENSMUST00000182191.8
3UTR CAA 72 bp GAATCATGTGGCCTGTGGCCGTGCTGGAGAGTCAGGTaGAACGCAGGCATTCTATTGAACAGTATTTATTTT +
Preference number: 4 (lower is better)
Translates to: ESCGLWPCWRVR*NAGILLNSIYF
Trigger: AAAATAAATACTGTTCAATAGAATGCCTGCGTTCAACCTGACTCTCCAGCACGGCCACAGGCCACATGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
CDS-3UTR CAA 90 bp CTGGCCTCCTTCCTTTGGCCACTGATAGCAGCAGCCCCTGTGCCTGCCACCCTCCTGGACGGGCTGGGCTaGAACAAAGCTGGTCAGGTC +
Preference number: 5 (lower is better)
Translates to: LASFLWPLIAAAPVPATLLDGLG*NKAGQV
Trigger: GACCTGACCAGCTTTGTTCAAGCCCAGCCCGTCCAG...GAGGGTGGCAGGCACAGGGGCTGCTGCTATCAGTGGCCAAAGGAAGGAGGCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182191.8
CDS TCA 90 bp CCCCAGCTTGCCAGAGCACAGCTTCTGGGAGATCCTCCTATAGCATaGGGCTTCTTCCGAGCTGGACATGGCGGTCATGCTGACTTCATC +
Preference number: 5 (lower is better)
Translates to: PQLARAQLLGDPPIA*GFFRAGHGGHADFI
Trigger: GATGAAGTCAGCATGACCGCCATGTCCAGCTCGGAAGAAGCCTCATGCTATAGGAGGATCTCCCAGAAGCTGTGCTCTGGCAAGCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000130175.8
ENSMUST00000132541.8
ENSMUST00000143047.8
ENSMUST00000145527.8
ENSMUST00000146054.8
ENSMUST00000182151.8
CDS-3UTR CAA 90 bp CTTGTGCACGTAGTAGCCAGTGATGTAACCCAGGATGAAGATGATCCAGAAGAGCTGGACGGGCTGGGCTaGAACAAAGCTGGTCAGGTC +
Preference number: 5 (lower is better)
Translates to: LVHVVASDVTQDEDDPEELDGLG*NKAGQV
Trigger: GACCTGACCAGCTTTGTTCAAGCCCAGCCCGTCCAG...CTCTTCTGGATCATCTTCATCCTGGGTTACATCACTGGCTACTACGTGCACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146543.9
ENSMUST00000182191.8
CDS TCA 72 bp ATGAGGCTTCTTCCGAGCTGGACATGGCGGTCATGCTaGCTTCATCCCGGCTGCTGCTGTCCCACCTGCTGT +
Preference number: 6 (lower is better)
Translates to: MRLLPSWTWRSC*LHPGCCCPTCC
Trigger: ACAGCAGGTGGGACAGCAGCAGCCGGGATGAAGTCAGCATGACCGCCATGTCCAGCTCGGAAGAAGCCTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000125533.9
ENSMUST00000126119.8
ENSMUST00000130175.8
ENSMUST00000131325.3
ENSMUST00000132541.8
ENSMUST00000143047.8
ENSMUST00000145527.8
ENSMUST00000146054.8
ENSMUST00000146543.9
ENSMUST00000182151.8
ENSMUST00000182191.8