RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMG6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038290

Ensembl transcript IDs: ENSMUST00000045281.13, ENSMUST00000130145.8, ENSMUST00000140197.3

Found 427 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGGAGGGTCCCAGCAGTTTCCGCCTGACCCTTGGGAGGGCTCTGTaGGGAGCGGCTCCCCCACAGCACGGCCACGGCGTGAGGTTGGAA +
Preference number: 1 (lower is better)
Translates to: QEGPSSFRLTLGRAL*GAAPPQHGHGVRLE
Trigger: TTCCAACCTCACGCCGTGGCCGTGCTGTGGGGGAGCCGCTCCTCACAGAGCCCTCCCAAGGGTCAGGCGGAAACTGCTGGGACCCTCCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 90 bp GGGTGGATTGGTAGCTCAGGCACGTGGACATCTTCCGTGTTACACTaGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGGGCC +
Preference number: 1 (lower is better)
Translates to: GWIGSSGTWTSSVLH*APGGLSGMAPWGWA
Trigger: GGCCCACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGATGTCCACGTGCCTGAGCTACCAATCCACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 90 bp GGGTACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTaGAGGGCCACTCAGGACGCACGGGCCCAAGACCAGATGGCCCTT +
Preference number: 1 (lower is better)
Translates to: GYCSERKAKDGSMCW*RATQDARAQDQMAL
Trigger: AAGGGCCATCTGGTCTTGGGCCCGTGCGTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCAGTACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 90 bp AGAGGGTACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTaGTGGAGGGCCACTCAGGACGCACGGGCCCAAGACCAGATGGCC +
Preference number: 1 (lower is better)
Translates to: RGYCSERKAKDGSMC*WRATQDARAQDQMA
Trigger: GGCCATCTGGTCTTGGGCCCGTGCGTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCAGTACCCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 90 bp GTCCTGGGCACTGTCCTGGGCCTGAGAAGGGCAGAGCACCCTTGGTaGAGCACTGCTCCTCCTGAGGTGGGTTGTGTGATCCCCTGCTTA +
Preference number: 1 (lower is better)
Translates to: VLGTVLGLRRAEHPW*STAPPEVGCVIPCL
Trigger: TAAGCAGGGGATCACACAACCCACCTCAGGAGGAGCAGTGCTTCACCAAGGGTGCTCTGCCCTTCTCAGGCCCAGGACAGTGCCCAGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 90 bp GCGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTaGGCACCCTTCCTGACAGCTGAAGCCTCTCAGACATTCAGGACA +
Preference number: 1 (lower is better)
Translates to: AWVHRASGPQGDGDT*APFLTAEASQTFRT
Trigger: TGTCCTGAATGTCTGAGAGGCTTCAGCTGTCAGGAAGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 90 bp CTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGCATCTaGGCCTCAGGGAGATGGAGACACCTGGGCACCCTTCCTGACAGC +
Preference number: 1 (lower is better)
Translates to: LLLLQTEVSVGPQGI*ASGRWRHLGTLPDS
Trigger: GCTGTCAGGAAGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 90 bp CACTGGGGAGCAGCTCCTTCAGGTCCGGGACGAAGGAAGATACCTTaGTGTCATCTTGGTCCTCTTGGTCCTCAGGAGAGGACAGCTGAG +
Preference number: 1 (lower is better)
Translates to: HWGAAPSGPGRRKIP*CHLGPLGPQERTAE
Trigger: CTCAGCTGTCCTCTCCTGAGGACCAAGAGGACCAAGATGACATCAAGGTATCTTCCTTCGTCCCGGACCTGAAGGAGCTGCTCCCCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 90 bp GAAGAGGATGGTTTATTGTCTGGGTGGATTGGTAGCTCAGGCACGTaGACATCTTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGA +
Preference number: 1 (lower is better)
Translates to: EEDGLLSGWIGSSGT*TSSVLHWAPGGLSG
Trigger: TCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGATGTCCACGTGCCTGAGCTACCAATCCACCCAGACAATAAACCATCCTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 90 bp CAGCCGAGCCAGACTGGCCAGGTGGTCAATGAAGCCGTTGGTATCTaGTACGAGGAACAAGGGTCTGATCTCCAGCTCCATCTGCCTCAT +
Preference number: 1 (lower is better)
Translates to: QPSQTGQVVNEAVGI*YEEQGSDLQLHLPH
Trigger: ATGAGGCAGATGGAGCTGGAGATCAGACCCTTGTTCCTCGTACCAGATACCAACGGCTTCATTGACCACCTGGCCAGTCTGGCTCGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 90 bp CACGGCCACGGCGTGAGGTTGGAAGAGGATGGTTTATTGTCTGGGTaGATTGGTAGCTCAGGCACGTGGACATCTTCCGTGTTACACTGG +
Preference number: 1 (lower is better)
Translates to: HGHGVRLEEDGLLSG*IGSSGTWTSSVLHW
Trigger: CCAGTGTAACACGGAAGATGTCCACGTGCCTGAGCTACCAATCCACCCAGACAATAAACCATCCTCTTCCAACCTCACGCCGTGGCCGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 90 bp GGTACGAGGAACAAGGGTCTGATCTCCAGCTCCATCTGCCTCATCTaGCTCTGGTCTTCCAAAACAGCCTGGATCTTTTCCTGGCGACGC +
Preference number: 1 (lower is better)
Translates to: GTRNKGLISSSICLI*LWSSKTAWIFSWRR
Trigger: GCGTCGCCAGGAAAAGATCCAGGCTGTTTTGGAAGACCAGAGTCAGATGAGGCAGATGGAGCTGGAGATCAGACCCTTGTTCCTCGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 90 bp CTGCAAGGGCAGATCCAAAGATGTGGGTGGAGGATTCCAGGTGTCTaGGTAGCCAAGCATCCAATCAGACCAGACTTTCACACTGGGGAG +
Preference number: 1 (lower is better)
Translates to: LQGQIQRCGWRIPGV*VAKHPIRPDFHTGE
Trigger: CTCCCCAGTGTGAAAGTCTGGTCTGATTGGATGCTTGGCTACCCAGACACCTGGAATCCTCCACCCACATCTTTGGATCTGCCCTTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 90 bp CCAGACATCCACAGCAACCTGCAAGGGCAGATCCAAAGATGTGGGTaGAGGATTCCAGGTGTCTGGGTAGCCAAGCATCCAATCAGACCA +
Preference number: 1 (lower is better)
Translates to: PDIHSNLQGQIQRCG*RIPGVWVAKHPIRP
Trigger: TGGTCTGATTGGATGCTTGGCTACCCAGACACCTGGAATCCTCCACCCACATCTTTGGATCTGCCCTTGCAGGTTGCTGTGGATGTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 90 bp TACCTTGGGGTTCAGCTCTCCCAGCTAGGAGACTTCTCAGAGGTGTaGCGGGTTGGGAAGGAAGGACAGCTGGGAAGGCTTTATTTGGTT +
Preference number: 1 (lower is better)
Translates to: YLGVQLSQLGDFSEV*RVGKEGQLGRLYLV
Trigger: AACCAAATAAAGCCTTCCCAGCTGTCCTTCCTTCCCAACCCGTCACACCTCTGAGAAGTCTCCTAGCTGGGAGAGCTGAACCCCAAGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 90 bp AGGCTAAAGGGCCCCATGTCCCCTCTTCTGGGTAAAGAAGTACAATaGCAAAGCCAGAAACGGGCTCAACACCCTGGCACCTCTACCTTG +
Preference number: 1 (lower is better)
Translates to: RLKGPMSPLLGKEVQ*QSQKRAQHPGTSTL
Trigger: CAAGGTAGAGGTGCCAGGGTGTTGAGCCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACATGGGGCCCTTTAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 90 bp CCATGGTGTCTGGGACGGGTGCCACTGACACATATTTTCCACCCTTaGATGCCAGCAGAGGCTCTTCTTGTCCACAAAGGGCTTCCAGAA +
Preference number: 1 (lower is better)
Translates to: PWCLGRVPLTHIFHP*MPAEALLVHKGLPE
Trigger: TTCTGGAAGCCCTTTGTGGACAAGAAGAGCCTCTGCTGGCATTCAAGGGTGGAAAATATGTGTCAGTGGCACCCGTCCCAGACACCATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 90 bp TTGACCAGACATCCACAGCAACCTGCAAGGGCAGATCCAAAGATGTaGGTGGAGGATTCCAGGTGTCTGGGTAGCCAAGCATCCAATCAG +
Preference number: 1 (lower is better)
Translates to: LTRHPQQPARADPKM*VEDSRCLGSQASNQ
Trigger: CTGATTGGATGCTTGGCTACCCAGACACCTGGAATCCTCCACCCACATCTTTGGATCTGCCCTTGCAGGTTGCTGTGGATGTCTGGTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 90 bp GAGAAGCCGATCCTCTTCCAGGATAAGCAGGGTGAGGTCATCATCTaGGTCCTTGTACAGTGGCACCTCAGACTGATTGACTGCAGTCAG +
Preference number: 1 (lower is better)
Translates to: EKPILFQDKQGEVII*VLVQWHLRLIDCSQ
Trigger: CTGACTGCAGTCAATCAGTCTGAGGTGCCACTGTACAAGGACCCAGATGATGACCTCACCCTGCTTATCCTGGAAGAGGATCGGCTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 90 bp TTGGCTTCCCATTTCCTTTCCCATGGTGTCTGGGACGGGTGCCACTaGCACATATTTTCCACCCTTGAATGCCAGCAGAGGCTCTTCTTG +
Preference number: 1 (lower is better)
Translates to: LASHFLSHGVWDGCH*HIFSTLECQQRLFL
Trigger: CAAGAAGAGCCTCTGCTGGCATTCAAGGGTGGAAAATATGTGTCAGTGGCACCCGTCCCAGACACCATGGGAAAGGAAATGGGAAGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 90 bp AGGTGTGACGGGTTGGGAAGGAAGGACAGCTGGGAAGGCTTTATTTaGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGT +
Preference number: 1 (lower is better)
Translates to: RCDGLGRKDSWEGFI*FLSQVVGVRFRTRS
Trigger: ACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCCCAGCTGTCCTTCCTTCCCAACCCGTCACACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 90 bp GCCCAAGGATGCAGCTTGTTCCTGGATCACAGAACGACACTCCTCTaGGAAGCAGTCTTTCAACTGGGAGTTATGCACGGCAAACATGTT +
Preference number: 1 (lower is better)
Translates to: AQGCSLFLDHRTTLL*EAVFQLGVMHGKHV
Trigger: AACATGTTTGCCGTGCATAACTCCCAGTTGAAAGACTGCTTCTCAGAGGAGTGTCGTTCTGTGATCCAGGAACAAGCTGCATCCTTGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR GCA 90 bp TTCAACTGGGAGTTATGCACGGCAAACATGTTGATGGTCATAAGCTaGAGCATACGGGTACTTCCAATAGGAGATGGGCTATGCTGCAGC +
Preference number: 1 (lower is better)
Translates to: FNWELCTANMLMVIS*SIRVLPIGDGLCCS
Trigger: GCTGCAGCATAGCCCATCTCCTATTGGAAGTACCCGTATGCTGCAGCTTATGACCATCAACATGTTTGCCGTGCATAACTCCCAGTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 90 bp ACCAGTAGAGAAAACATAGCCAAGCCCAAGGATGCAGCTTGTTCCTaGATCACAGAACGACACTCCTCTGAGAAGCAGTCTTTCAACTGG +
Preference number: 1 (lower is better)
Translates to: TSRENIAKPKDAACS*ITERHSSEKQSFNW
Trigger: CCAGTTGAAAGACTGCTTCTCAGAGGAGTGTCGTTCTGTGATCCAGGAACAAGCTGCATCCTTGGGCTTGGCTATGTTTTCTCTACTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 90 bp AGGGTGAGGTCATCATCTGGGTCCTTGTACAGTGGCACCTCAGACTaGTTGACTGCAGTCAGTATGTTACAGAAATCAGCTAGTGTTGAC +
Preference number: 1 (lower is better)
Translates to: RVRSSSGSLYSGTSD*LTAVSMLQKSASVD
Trigger: GTCAACACTAGCTGATTTCTGTAACATACTGACTGCAGTCAATCAGTCTGAGGTGCCACTGTACAAGGACCCAGATGATGACCTCACCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 90 bp AAGCCTCTCAGACATTCAGGACAGAGACTGTGCAGACTGAGGGGTTaGTCAGTTTCCTTGCATCTAATGGAAACTTTAGAATCTCTGCCC +
Preference number: 1 (lower is better)
Translates to: KPLRHSGQRLCRLRG*SVSLHLMETLESLP
Trigger: GGGCAGAGATTCTAAAGTTTCCATTAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCACAGTCTCTGTCCTGAATGTCTGAGAGGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp CGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACCCTGGAGATGGAGACACCTaGGCACCCTTCCTGACAGCT +
Preference number: 2 (lower is better)
Translates to: RGSTGHLGLREMETPGHPGDGDT*APFLTA
Trigger: AGCTGTCAGGAAGGGTGCCCAGGTGTCTCCATCTCC...AGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp CGCACGGGCCCAAGACCAGATGGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGAGCACGGCCACGGCGTaGGGTTGGAAGAGGATGGTT +
Preference number: 2 (lower is better)
Translates to: RTGPRPDGPSLRPMTAQKSTATA*GWKRMV
Trigger: AACCATCCTCTTCCAACCTCACGCCGTGGCCGTGCT...CTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCCATCTGGTCTTGGGCCCGTGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp CCAGCTAGGAGACTTCTCAGAGGTGTGACGGGTTGGGAAGGAAGGACAGCTGGGCCAACCCCCAGCCAATaGCCCTCACAGCCAGAGGAG +
Preference number: 2 (lower is better)
Translates to: PARRLLRGVTGWEGRTAGPTPSQ*PSQPEE
Trigger: CTCCTCTGGCTGTGAGGGTCATTGGCTGGGGGTTGG...CCCAGCTGTCCTTCCTTCCCAACCCGTCACACCTCTGAGAAGTCTCCTAGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp CAGCGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACGGTAGCTCAGGCACGTaGACATCTTCCGTGTTACAC +
Preference number: 2 (lower is better)
Translates to: QRGSTGHLGLREMETPGHGSSGT*TSSVLH
Trigger: GTGTAACACGGAAGATGTCCACGTGCCTGAGCTACC...GTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp GACGGGTTGGGAAGGAAGGACAGCTGGGAAGGCTTTATTTGGTTCCTGTCACAGCTTGGGAGGGCTCTGTaGGGAGCGGCTCCCCCACAG +
Preference number: 2 (lower is better)
Translates to: DGLGRKDSWEGFIWFLSQLGRAL*GAAPPQ
Trigger: CTGTGGGGGAGCCGCTCCTCACAGAGCCCTCCCAAG...CTGTGACAGGAACCAAATAAAGCCTTCCCAGCTGTCCTTCCTTCCCAACCCGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp CGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACCCTAGAGACTGTGCAGACTaGGGGGTTGATCAGTTTCCT +
Preference number: 2 (lower is better)
Translates to: RGSTGHLGLREMETPGHPRDCAD*GVDQFP
Trigger: AGGAAACTGATCAACCCCTCAGTCTGCACAGTCTCT...AGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR GCA 90 bp TTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGCATCCTCACCCCCACTaGCTTCAGCCTCTGAATCTT +
Preference number: 2 (lower is better)
Translates to: FRVTLGAWRPLRNGSMGVHPHPH*LQPLNL
Trigger: AAGATTCAGAGGCTGAAGGCAGTGGGGGTGAGGATG...CACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp AGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGGACAGGGTGGGAGCTTGGTaGCCTACTCGGCTTGTCCAC +
Preference number: 2 (lower is better)
Translates to: SERKAKDGSMCWWRATQDRVGAW*PTRLVH
Trigger: GTGGACAAGCCGAGTAGGCCACCAAGCTCCCACCCT...GTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp CCAGCTAGGAGACTTCTCAGAGGTGTGACGGGTTGGGAAGGAAGGACAGCTGGGGGTCCACAGGGCATCTaGGCCTCAGGGAGATGGAGA +
Preference number: 2 (lower is better)
Translates to: PARRLLRGVTGWEGRTAGGPQGI*ASGRWR
Trigger: TCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACC...CCCAGCTGTCCTTCCTTCCCAACCCGTCACACCTCTGAGAAGTCTCCTAGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CAA 90 bp CCCCCACAGCACGGCCACGGCGTGAGGTTGGAAGAGGATGGTTTATaGTCTGGGTGGATTGGTAGCTCAGGCACGTGGACATCTTCCGTG +
Preference number: 2 (lower is better)
Translates to: PPQHGHGVRLEEDGL*SGWIGSSGTWTSSV
Trigger: CACGGAAGATGTCCACGTGCCTGAGCTACCAATCCACCCAGACAATAAACCATCCTCTTCCAACCTCACGCCGTGGCCGTGCTGTGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CAA 90 bp CTCCCTCCAGCCCTGGGACCAGATAGAGGGAAAAAGGGTGGGAGCTaGGTGGCCTACTCGGCTTGTCCACCTGTTGTCACTGTAGCCAGT +
Preference number: 2 (lower is better)
Translates to: LPPALGPDRGKKGGS*VAYSACPPVVTVAS
Trigger: ACTGGCTACAGTGACAACAGGTGGACAAGCCGAGTAGGCCACCAAGCTCCCACCCTTTTTCCCTCTATCTGGTCCCAGGGCTGGAGGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp GTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCTTGGGAGGGCTCTGTaGGGAGCGGCTCCCCCACAG +
Preference number: 2 (lower is better)
Translates to: VGQKEERYSSIPNPPTPSLGRAL*GAAPPQ
Trigger: CTGTGGGGGAGCCGCTCCTCACAGAGCCCTCCCAAG...GCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp CGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACCCTAATACTTCAGCACTGTaGCCCTTTTGCAGTCAGCTG +
Preference number: 2 (lower is better)
Translates to: RGSTGHLGLREMETPGHPNTSAL*PFCSQL
Trigger: CAGCTGACTGCAAAAGGGTCACAGTGCTGAAGTATT...AGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp ACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCCTTACCACTACAGAGTaGCTGGGTCCTCGGGGTGAG +
Preference number: 2 (lower is better)
Translates to: TAVKGRPRMGACAGGGPLLTTTE*LGPRGE
Trigger: CTCACCCCGAGGACCCAGCCACTCTGTAGTGGTAAG...GAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CAA 90 bp TGGCGACGCTGCTGCTCAGCTATCTTCCTTGCTAGAGCCAGCTTCTaGGCCCGAAGTTCCCTGATGTCATCCTCACCCCCACTGCCTTCA +
Preference number: 2 (lower is better)
Translates to: WRRCCSAIFLARASF*ARSSLMSSSPPLPS
Trigger: TGAAGGCAGTGGGGGTGAGGATGACATCAGGGAACTTCGGGCCAAGAAGCTGGCTCTAGCAAGGAAGATAGCTGAGCAGCAGCGTCGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CAA 90 bp CTCTCCAGCAGCCGAGCCAGACTGGCCAGGTGGTCAATGAAGCCGTaGGTATCTGGTACGAGGAACAAGGGTCTGATCTCCAGCTCCATC +
Preference number: 2 (lower is better)
Translates to: LSSSRARLARWSMKP*VSGTRNKGLISSSI
Trigger: GATGGAGCTGGAGATCAGACCCTTGTTCCTCGTACCAGATACCAACGGCTTCATTGACCACCTGGCCAGTCTGGCTCGGCTGCTGGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp ACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCACCCTTCCTGACAGCTaGAGCCTCTCAGACATTCAG +
Preference number: 2 (lower is better)
Translates to: TAVKGRPRMGACAGGGPLTLPDS*SLSDIQ
Trigger: CTGAATGTCTGAGAGGCTTCAGCTGTCAGGAAGGGT...GAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR GCA 90 bp AGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGGACGGCGAGGGCTGCTGTTaGTGTTACAGACAGAAGTCA +
Preference number: 2 (lower is better)
Translates to: SERKAKDGSMCWWRATQDGEGCC*CYRQKS
Trigger: TGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCC...GTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR GCA 90 bp ACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCTCCCCAAGAGGGTACTaGAGTGAAAGGAAGGCCAAG +
Preference number: 2 (lower is better)
Translates to: TAVKGRPRMGACAGGGPLSPRGY*SERKAK
Trigger: CTTGGCCTTCCTTTCACTGCAGTACCCTCTTGGGGA...GAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR GCA 90 bp TGGTCAAGGCCCGCAGGCAGGAGTCCCGACTCTCAAATCTCCGTTCGAGGAACTAGCCAAGCCCAAGGATaGAGCTTGTTCCTGGATCAC +
Preference number: 2 (lower is better)
Translates to: WSRPAGRSPDSQISVRGTSQAQG*SLFLDH
Trigger: GTGATCCAGGAACAAGCTGCATCCTTGGGCTTGGCT...AGTTCCTCGAACGGAGATTTGAGAGTCGGGACTCCTGCCTGCGGGCCTTGACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GCCCCATGTCCCCTCTTCTGGGTAAAGAAGTACAATGACAAAGCCAGAAACGGGGTTACACTGGGCGCCTaGCGGCCTCTCAGGAATGGC +
Preference number: 2 (lower is better)
Translates to: APCPLFWVKKYNDKARNGVTLGA*RPLRNG
Trigger: GCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAAC...CCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACATGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp CGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACCCTGCAAAGTGCAAGATGTaGACAGGAAGAGAAACATGT +
Preference number: 2 (lower is better)
Translates to: RGSTGHLGLREMETPGHPAKCKM*TGRETC
Trigger: ACATGTTTCTCTTCCTGTCCACATCTTGCACTTTGC...AGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCTCCCCTCAGCCCACCTaGGCCCACGTAAGGAAGGCT +
Preference number: 2 (lower is better)
Translates to: VGQKEERYSSIPNPPTPSSPQPT*AHVRKA
Trigger: AGCCTTCCTTACGTGGGCCCAGGTGGGCTGAGGGGA...GCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CAA 90 bp TGTCCAGTAATGTCCTCACTTCGGAAGGCGATAGATTCAAGTTCATaGCCACGGCTGGTCAAGGCCCGCAGGCAGGAGTCCCGACTCTCA +
Preference number: 2 (lower is better)
Translates to: CPVMSSLRKAIDSSS*PRLVKARRQESRLS
Trigger: TGAGAGTCGGGACTCCTGCCTGCGGGCCTTGACCAGCCGTGGCAATGAACTTGAATCTATCGCCTTCCGAAGTGAGGACATTACTGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR GCA 90 bp TTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGAAAACAAGGGCAAAGTaGAAGATGTGGACAGGAAGA +
Preference number: 2 (lower is better)
Translates to: FRVTLGAWRPLRNGSMGVKTRAK*KMWTGR
Trigger: TCTTCCTGTCCACATCTTGCACTTTGCCCTTGTTTT...CACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp CTTGTCTTTGCAGTAGTGCAGGCAGCAAGAGAGGATCAGGTCATCGTTGTTACCTCAGGAATGGCTCCATaGGGGTGGGCCCCAGTGTGG +
Preference number: 2 (lower is better)
Translates to: LVFAVVQAAREDQVIVVTSGMAP*GWAPVW
Trigger: CCACACTGGGGCCCACCCCCATGGAGCCATTCCTGA...GGTAACAACGATGACCTGATCCTCTCTTGCTGCCTGCACTACTGCAAAGACAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp CCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAACTGCTGTCTCCTGCCCTTTaGCGAGGCCGTCCAGCTCAT +
Preference number: 2 (lower is better)
Translates to: PVTGGRGKIQNEKSHKELLSPAL*RGRPAH
Trigger: ATGAGCTGGACGGCCTCGCCAAAGGGCAGGAGACAG...CAGTTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp CCCTGGCACCTCTACCTTGGGGTTCAGCTCTCCCAGCTAGGAGACTTCTCAGAGCAGCAAAGAAGAGTCTaGGGAAATTTCCCCAAGAGG +
Preference number: 2 (lower is better)
Translates to: PWHLYLGVQLSQLGDFSEQQRRV*GNFPKR
Trigger: CCTCTTGGGGAAATTTCCTCAGACTCTTCTTTGCTG...CTCTGAGAAGTCTCCTAGCTGGGAGAGCTGAACCCCAAGGTAGAGGTGCCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR GCA 90 bp CCTGGATCTTTTCCTGGCGACGCTGCTGCTCAGCTATCTTCCTTGCTAGAGCCATCCCCAAGAGGGTACTaGAGTGAAAGGAAGGCCAAG +
Preference number: 2 (lower is better)
Translates to: PGSFPGDAAAQLSSLLEPSPRGY*SERKAK
Trigger: CTTGGCCTTCCTTTCACTGCAGTACCCTCTTGGGGA...TGGCTCTAGCAAGGAAGATAGCTGAGCAGCAGCGTCGCCAGGAAAAGATCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GGAAGGCTTTATTTGGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGTCAGGAATGGCTCCATaGGGGTGGGCCCCAGTGTGG +
Preference number: 2 (lower is better)
Translates to: GRLYLVPVTGGRGKIQNESGMAP*GWAPVW
Trigger: CCACACTGGGGCCCACCCCCATGGAGCCATTCCTGA...CTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GGAAGGCTTTATTTGGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGGTTACACTGGGCGCCTaGCGGCCTCTCAGGAATGGC +
Preference number: 2 (lower is better)
Translates to: GRLYLVPVTGGRGKIQNEVTLGA*RPLRNG
Trigger: GCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAAC...CTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp AGGAAATTTCCCCAAGAGGGTACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCACTCCCTGCTAAATCTTaGCAGCCCAGGAGGGTCCCA +
Preference number: 2 (lower is better)
Translates to: RKFPQEGTAVKGRPRMGALPAKS*QPRRVP
Trigger: TGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAG...TGCTCCCATCCTTGGCCTTCCTTTCACTGCAGTACCCTCTTGGGGAAATTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp AGGAAATTTCCCCAAGAGGGTACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCACTTACCACTACAGAGTaGCTGGGTCCTCGGGGTGAG +
Preference number: 2 (lower is better)
Translates to: RKFPQEGTAVKGRPRMGALTTTE*LGPRGE
Trigger: CTCACCCCGAGGACCCAGCCACTCTGTAGTGGTAAG...TGCTCCCATCCTTGGCCTTCCTTTCACTGCAGTACCCTCTTGGGGAAATTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGGAAAACAAGGGCAAAGTGCAACCATTTCCTTTCCCATaGTGTCTGGGACGGGTGCCA +
Preference number: 2 (lower is better)
Translates to: GPSLRPMTAQKENKGKVQPFPFP*CLGRVP
Trigger: TGGCACCCGTCCCAGACACCATGGGAAAGGAAATGG...TTGCACTTTGCCCTTGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGGAAAACAAGGGCAAAGTGCAAGCCAGACTGGCCAGGTaGTCAATGAAGCCGTTGGTA +
Preference number: 2 (lower is better)
Translates to: GPSLRPMTAQKENKGKVQARLAR*SMKPLV
Trigger: TACCAACGGCTTCATTGACCACCTGGCCAGTCTGGC...TTGCACTTTGCCCTTGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CAA 90 bp CAGCTCCTTCAGGTCCGGGACGAAGGAAGATACCTTGATGTCATCTaGGTCCTCTTGGTCCTCAGGAGAGGACAGCTGAGCTTTAGCAGA +
Preference number: 2 (lower is better)
Translates to: QLLQVRDEGRYLDVI*VLLVLRRGQLSFSR
Trigger: TCTGCTAAAGCTCAGCTGTCCTCTCCTGAGGACCAAGAGGACCAAGATGACATCAAGGTATCTTCCTTCGTCCCGGACCTGAAGGAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp GCCAGGTGGTCAATGAAGCCGTTGGTATCTGGTACGAGGAACAAGGGTCTGATCTGGGACGGGTGCCACTaGCACATATTTTCCACCCTT +
Preference number: 2 (lower is better)
Translates to: ARWSMKPLVSGTRNKGLIWDGCH*HIFSTL
Trigger: AAGGGTGGAAAATATGTGTCAGTGGCACCCGTCCCA...GATCAGACCCTTGTTCCTCGTACCAGATACCAACGGCTTCATTGACCACCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR GCA 90 bp GGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGGAAAACAAGGGCAAAGTGCAAGGCGAGGGCTGCTGTTaGTGTTACAGACAGAAGTCA +
Preference number: 2 (lower is better)
Translates to: GPSLRPMTAQKENKGKVQGEGCC*CYRQKS
Trigger: TGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCC...TTGCACTTTGCCCTTGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR GCA 90 bp GCCCCATGTCCCCTCTTCTGGGTAAAGAAGTACAATGACAAAGCCAGAAACGGGTCCTGGCGACGCTGCTaGTCAGCTATCTTCCTTGCT +
Preference number: 2 (lower is better)
Translates to: APCPLFWVKKYNDKARNGSWRRC*SAIFLA
Trigger: AGCAAGGAAGATAGCTGAGCAGCAGCGTCGCCAGGA...CCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACATGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GTAAAGAAGTACAATGACAAAGCCAGAAACGGGCTCAACACCCTGGCACCTCTAGATGGGAGCATGTGCTaGTGGAGGGCCACTCAGGAC +
Preference number: 2 (lower is better)
Translates to: VKKYNDKARNGLNTLAPLDGSMC*WRATQD
Trigger: GTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATC...TAGAGGTGCCAGGGTGTTGAGCCCGTTTCTGGCTTTGTCATTGTACTTCTTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GCCAGGTGGTCAATGAAGCCGTTGGTATCTGGTACGAGGAACAAGGGTCTGATCACCAGACTTTCACACTaGGGAGCAGCTCCTTCAGGT +
Preference number: 2 (lower is better)
Translates to: ARWSMKPLVSGTRNKGLITRLSH*GAAPSG
Trigger: ACCTGAAGGAGCTGCTCCCCAGTGTGAAAGTCTGGT...GATCAGACCCTTGTTCCTCGTACCAGATACCAACGGCTTCATTGACCACCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp CCTGGATCTTTTCCTGGCGACGCTGCTGCTCAGCTATCTTCCTTGCTAGAGCCAGCAGATCCAAAGATGTaGGTGGAGGATTCCAGGTGT +
Preference number: 2 (lower is better)
Translates to: PGSFPGDAAAQLSSLLEPADPKM*VEDSRC
Trigger: ACACCTGGAATCCTCCACCCACATCTTTGGATCTGC...TGGCTCTAGCAAGGAAGATAGCTGAGCAGCAGCGTCGCCAGGAAAAGATCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CAA 90 bp CAGGTCCGGGACGAAGGAAGATACCTTGATGTCATCTTGGTCCTCTaGGTCCTCAGGAGAGGACAGCTGAGCTTTAGCAGAGTCCTTAAG +
Preference number: 2 (lower is better)
Translates to: QVRDEGRYLDVILVL*VLRRGQLSFSRVLK
Trigger: CTTAAGGACTCTGCTAAAGCTCAGCTGTCCTCTCCTGAGGACCAAGAGGACCAAGATGACATCAAGGTATCTTCCTTCGTCCCGGACCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp AAGTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAAGAGAGCTTCTGAGCTaGGTCCTGGGCACTGTCCTG +
Preference number: 2 (lower is better)
Translates to: KWDRKKKGILPFPIPQPPRELLS*VLGTVL
Trigger: CAGGACAGTGCCCAGGACTCAGCTCAGAAGCTCTCT...TGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCACTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp GTAAAGAAGTACAATGACAAAGCCAGAAACGGGCTCAACACCCTGGCACCTCTACGAGGAACAAGGGTCTaGTCTCCAGCTCCATCTGCC +
Preference number: 2 (lower is better)
Translates to: VKKYNDKARNGLNTLAPLRGTRV*SPAPSA
Trigger: GGCAGATGGAGCTGGAGATCAGACCCTTGTTCCTCG...TAGAGGTGCCAGGGTGTTGAGCCCGTTTCTGGCTTTGTCATTGTACTTCTTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGGAAAACAAGGGCAAAGTGCAAGGTTTATTGTCTGGGTaGATTGGTAGCTCAGGCACG +
Preference number: 2 (lower is better)
Translates to: GPSLRPMTAQKENKGKVQGLLSG*IGSSGT
Trigger: CGTGCCTGAGCTACCAATCCACCCAGACAATAAACC...TTGCACTTTGCCCTTGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp CAAGGCCCGCAGGCAGGAGTCCCGACTCTCAAATCTCCGTTCGAGGAACTCAATGAGGTTGGAAGAGGATaGTTTATTGTCTGGGTGGAT +
Preference number: 2 (lower is better)
Translates to: QGPQAGVPTLKSPFEELNEVGRG*FIVWVD
Trigger: ATCCACCCAGACAATAAACCATCCTCTTCCAACCTC...ATTGAGTTCCTCGAACGGAGATTTGAGAGTCGGGACTCCTGCCTGCGGGCCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp GACGGGTTGGGAAGGAAGGACAGCTGGGAAGGCTTTATTTGGTTCCTGTCACAGTGCAGACTGAGGGGTTaGTCAGTTTCCTTGCATCTA +
Preference number: 2 (lower is better)
Translates to: DGLGRKDSWEGFIWFLSQCRLRG*SVSLHL
Trigger: TAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCA...CTGTGACAGGAACCAAATAAAGCCTTCCCAGCTGTCCTTCCTTCCCAACCCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp TGTGATCCCCTGCTTAGCCTGAGACAGCCTTCTCAATCCTCCTCTACCTCTTTGCTTCCCTTAGGCCCATaGCTGCCCAAAAGGAAAACA +
Preference number: 2 (lower is better)
Translates to: CDPLLSLRQPSQSSSTSLLPLGP*LPKRKT
Trigger: TGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAG...CAAAGAGGTAGAGGAGGATTGAGAAGGCTGTCTCAGGCTAAGCAGGGGATCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GCCAGGTGGTCAATGAAGCCGTTGGTATCTGGTACGAGGAACAAGGGTCTGATCAGGCATGTGCAGCGCTaGACCAGTAGAGAAAACATA +
Preference number: 2 (lower is better)
Translates to: ARWSMKPLVSGTRNKGLIRHVQR*TSRENI
Trigger: TATGTTTTCTCTACTGGTCCAGCGCTGCACATGCCT...GATCAGACCCTTGTTCCTCGTACCAGATACCAACGGCTTCATTGACCACCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp CCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAACTGATCCAAAGATGTGGGTaGAGGATTCCAGGTGTCTGG +
Preference number: 2 (lower is better)
Translates to: PVTGGRGKIQNEKSHKELIQRCG*RIPGVW
Trigger: CCAGACACCTGGAATCCTCCACCCACATCTTTGGAT...CAGTTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp CCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAACTGCATATTTTCCACCCTTaGATGCCAGCAGAGGCTCTT +
Preference number: 2 (lower is better)
Translates to: PVTGGRGKIQNEKSHKELHIFHP*MPAEAL
Trigger: AAGAGCCTCTGCTGGCATTCAAGGGTGGAAAATATG...CAGTTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GTCTTTGCAGTAGTGCAGGCAGCAAGAGAGGATCAGGTCATCGTTGTTACCCAGGGAAGGAAGGACAGCTaGGAAGGCTTTATTTGGTTC +
Preference number: 2 (lower is better)
Translates to: VFAVVQAAREDQVIVVTQGRKDS*EGFIWF
Trigger: GAACCAAATAAAGCCTTCCCAGCTGTCCTTCCTTCC...CTGGGTAACAACGATGACCTGATCCTCTCTTGCTGCCTGCACTACTGCAAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp CTTGTCTTTGCAGTAGTGCAGGCAGCAAGAGAGGATCAGGTCATCGTTGTTACCGAAGCCGTTGGTATCTaGTACGAGGAACAAGGGTCT +
Preference number: 2 (lower is better)
Translates to: LVFAVVQAAREDQVIVVTEAVGI*YEEQGS
Trigger: AGACCCTTGTTCCTCGTACCAGATACCAACGGCTTC...GGTAACAACGATGACCTGATCCTCTCTTGCTGCCTGCACTACTGCAAAGACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp CTTGTCTTTGCAGTAGTGCAGGCAGCAAGAGAGGATCAGGTCATCGTTGTTACCTGCAGACTGAGGGGTTaGTCAGTTTCCTTGCATCTA +
Preference number: 2 (lower is better)
Translates to: LVFAVVQAAREDQVIVVTCRLRG*SVSLHL
Trigger: TAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCA...GGTAACAACGATGACCTGATCCTCTCTTGCTGCCTGCACTACTGCAAAGACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR TCA 90 bp GTAAAGAAGTACAATGACAAAGCCAGAAACGGGCTCAACACCCTGGCACCTCTATCAGGAGAGGACAGCTaGGCTTTAGCAGAGTCCTTA +
Preference number: 2 (lower is better)
Translates to: VKKYNDKARNGLNTLAPLSGEDS*ALAESL
Trigger: TAAGGACTCTGCTAAAGCTCAGCTGTCCTCTCCTGA...TAGAGGTGCCAGGGTGTTGAGCCCGTTTCTGGCTTTGTCATTGTACTTCTTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR GCA 90 bp CAAAGATGTGGGTGGAGGATTCCAGGTGTCTGGGTAGCCAAGCATCCAATCAGATTGATGGTCATAAGCTaGAGCATACGGGTACTTCCA +
Preference number: 2 (lower is better)
Translates to: QRCGWRIPGVWVAKHPIRLMVIS*SIRVLP
Trigger: TGGAAGTACCCGTATGCTGCAGCTTATGACCATCAA...TCTGATTGGATGCTTGGCTACCCAGACACCTGGAATCCTCCACCCACATCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR GCA 90 bp GTCTTTGCAGTAGTGCAGGCAGCAAGAGAGGATCAGGTCATCGTTGTTACCCAGCCTTTTGCAGTCAGCTaGAATAACCTTATCCGAGGT +
Preference number: 2 (lower is better)
Translates to: VFAVVQAAREDQVIVVTQPFAVS*NNLIRG
Trigger: ACCTCGGATAAGGTTATTGCAGCTGACTGCAAAAGG...CTGGGTAACAACGATGACCTGATCCTCTCTTGCTGCCTGCACTACTGCAAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCAATGGTTTATTGTCTGGGTaGATTGGTAGCTCAGGCACG +
Preference number: 2 (lower is better)
Translates to: DRKKKGILPFPIPQPPANGLLSG*IGSSGT
Trigger: CGTGCCTGAGCTACCAATCCACCCAGACAATAAACC...ATTGGCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp AAGTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCATCTTCCAAAACAGCCTaGATCTTTTCCTGGCGACGC +
Preference number: 2 (lower is better)
Translates to: KWDRKKKGILPFPIPQPPSSKTA*IFSWRR
Trigger: GCGTCGCCAGGAAAAGATCCAGGCTGTTTTGGAAGA...TGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCACTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp GTCTTTGCAGTAGTGCAGGCAGCAAGAGAGGATCAGGTCATCGTTGTTACCCAGGCAAAGTGCAAGATGTaGACAGGAAGAGAAACATGT +
Preference number: 2 (lower is better)
Translates to: VFAVVQAAREDQVIVVTQAKCKM*TGRETC
Trigger: ACATGTTTCTCTTCCTGTCCACATCTTGCACTTTGC...CTGGGTAACAACGATGACCTGATCCTCTCTTGCTGCCTGCACTACTGCAAAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp AAGTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGGAAGGAAGGACAGCTaGGAAGGCTTTATTTGGTTC +
Preference number: 2 (lower is better)
Translates to: KWDRKKKGILPFPIPQPPGRKDS*EGFIWF
Trigger: GAACCAAATAAAGCCTTCCCAGCTGTCCTTCCTTCC...TGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp TCTAATGGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCACCTTGATGTCATCTTaGTCCTCTTGGTCCTCAGGA +
Preference number: 2 (lower is better)
Translates to: SNGNFRISAPYHYRVAGSTLMSS*SSWSSG
Trigger: TCCTGAGGACCAAGAGGACCAAGATGACATCAAGGT...GGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCCATTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CAA 90 bp TCTGAGAAGCAGTCTTTCAACTGGGAGTTATGCACGGCAAACATGTaGATGGTCATAAGCTGCAGCATACGGGTACTTCCAATAGGAGAT +
Preference number: 2 (lower is better)
Translates to: SEKQSFNWELCTANM*MVISCSIRVLPIGD
Trigger: ATCTCCTATTGGAAGTACCCGTATGCTGCAGCTTATGACCATCAACATGTTTGCCGTGCATAACTCCCAGTTGAAAGACTGCTTCTCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CCA 90 bp ACAGAGACTGTGCAGACTGAGGGGTTGATCAGTTTCCTTGCATCTAATGGAAACGAGGTTGGAAGAGGATaGTTTATTGTCTGGGTGGAT +
Preference number: 2 (lower is better)
Translates to: TETVQTEGLISFLASNGNEVGRG*FIVWVD
Trigger: ATCCACCCAGACAATAAACCATCCTCTTCCAACCTC...GTTTCCATTAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCACAGTCTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR GCA 90 bp GACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCAATCTCAGACTGATTGACTaGAGTCAGTATGTTACAGAA +
Preference number: 2 (lower is better)
Translates to: DRKKKGILPFPIPQPPANLRLID*SQYVTE
Trigger: TTCTGTAACATACTGACTGCAGTCAATCAGTCTGAG...ATTGGCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 72 bp CCCAGCAGTTTCCGCCTGACCCTTGGGAGGGCTCTGTaGGGAGCGGCTCCCCCACAGCACGGCCACGGCGTG +
Preference number: 3 (lower is better)
Translates to: PSSFRLTLGRAL*GAAPPQHGHGV
Trigger: CACGCCGTGGCCGTGCTGTGGGGGAGCCGCTCCTCACAGAGCCCTCCCAAGGGTCAGGCGGAAACTGCTGGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 72 bp AGGCACGTGGACATCTTCCGTGTTACACTGGGCGCCTaGCGGCCTCTCAGGAATGGCTCCATGGGGGTGGGC +
Preference number: 3 (lower is better)
Translates to: RHVDIFRVTLGA*RPLRNGSMGVG
Trigger: GCCCACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGATGTCCACGTGCCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp TTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGGTGCGTGCGTGTGTGTaGAAGGGCGAGGGCTGCTGT +
Preference number: 3 (lower is better)
Translates to: FRVTLGAWRPLRNGSMGVVRACV*KGEGCC
Trigger: ACAGCAGCCCTCGCCCTTCAACACACACGCACGCAC...CACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 72 bp GCCCCTTACCACTACAGAGTGGCTGGGTCCTCGGGGTaGGTAGGCCTCCCTCCAGCCCTGGGACCAGATAGA +
Preference number: 3 (lower is better)
Translates to: APYHYRVAGSSG*VGLPPALGPDR
Trigger: TCTATCTGGTCCCAGGGCTGGAGGGAGGCCTACTCACCCCGAGGACCCAGCCACTCTGTAGTGGTAAGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp CAGCGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACGTCATCTTGGTCCTCTaGGTCCTCAGGAGAGGACAG +
Preference number: 3 (lower is better)
Translates to: QRGSTGHLGLREMETPGHVILVL*VLRRGQ
Trigger: CTGTCCTCTCCTGAGGACCAAGAGGACCAAGATGAC...GTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 72 bp GGTAGCTCAGGCACGTGGACATCTTCCGTGTTACACTaGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGG +
Preference number: 3 (lower is better)
Translates to: GSSGTWTSSVLH*APGGLSGMAPW
Trigger: CCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGATGTCCACGTGCCTGAGCTACC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 72 bp AGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTaGAGGGCCACTCAGGACGCACGGGCCCAAGACCAG +
Preference number: 3 (lower is better)
Translates to: SERKAKDGSMCW*RATQDARAQDQ
Trigger: CTGGTCTTGGGCCCGTGCGTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 72 bp TGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTaGTGGAGGGCCACTCAGGACGCACGGGCCCAAGAC +
Preference number: 3 (lower is better)
Translates to: CSERKAKDGSMC*WRATQDARAQD
Trigger: GTCTTGGGCCCGTGCGTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 72 bp TGTGAGGAGCGGCTCCCCCACAGCACGGCCACGGCGTaGGGTTGGAAGAGGATGGTTTATTGTCTGGGTGGA +
Preference number: 3 (lower is better)
Translates to: CEERLPHSTATA*GWKRMVYCLGG
Trigger: TCCACCCAGACAATAAACCATCCTCTTCCAACCTCACGCCGTGGCCGTGCTGTGGGGGAGCCGCTCCTCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp CAGCGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACTGCACGGCAAACATGTaGATGGTCATAAGCTGCAGC +
Preference number: 3 (lower is better)
Translates to: QRGSTGHLGLREMETPGHCTANM*MVISCS
Trigger: GCTGCAGCTTATGACCATCAACATGTTTGCCGTGCA...GTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 72 bp ACTGTCCTGGGCCTGAGAAGGGCAGAGCACCCTTGGTaGAGCACTGCTCCTCCTGAGGTGGGTTGTGTGATC +
Preference number: 3 (lower is better)
Translates to: TVLGLRRAEHPW*STAPPEVGCVI
Trigger: GATCACACAACCCACCTCAGGAGGAGCAGTGCTTCACCAAGGGTGCTCTGCCCTTCTCAGGCCCAGGACAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 72 bp TTACAGACAGAAGTCAGCGTGGGTCCACAGGGCATCTaGGCCTCAGGGAGATGGAGACACCTGGGCACCCTT +
Preference number: 3 (lower is better)
Translates to: LQTEVSVGPQGI*ASGRWRHLGTL
Trigger: AAGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACGCTGACTTCTGTCTGTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp TTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGCTGGGAAGGCTTTATTaGGTTCCTGTCACAGGTGGT +
Preference number: 3 (lower is better)
Translates to: FRVTLGAWRPLRNGSMGVLGRLY*VPVTGG
Trigger: ACCACCTGTGACAGGAACCAAATAAAGCCTTCCCAG...CACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp CCCTGGCACCTCTACCTTGGGGTTCAGCTCTCCCAGCTAGGAGACTTCTCAGAGGCTAGAGCCAGCTTCTaGGCCCGAAGTTCCCTGATG +
Preference number: 3 (lower is better)
Translates to: PWHLYLGVQLSQLGDFSEARASF*ARSSLM
Trigger: CATCAGGGAACTTCGGGCCAAGAAGCTGGCTCTAGC...CTCTGAGAAGTCTCCTAGCTGGGAGAGCTGAACCCCAAGGTAGAGGTGCCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp AGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGGACGGCCACGGCGTGAGGTaGGAAGAGGATGGTTTATTG +
Preference number: 3 (lower is better)
Translates to: SERKAKDGSMCWWRATQDGHGVR*EEDGLL
Trigger: CAATAAACCATCCTCTTCCAACCTCACGCCGTGGCC...GTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp CCCTGGCACCTCTACCTTGGGGTTCAGCTCTCCCAGCTAGGAGACTTCTCAGAGGCCCAAGGATGCAGCTaGTTCCTGGATCACAGAACG +
Preference number: 3 (lower is better)
Translates to: PWHLYLGVQLSQLGDFSEAQGCS*FLDHRT
Trigger: CGTTCTGTGATCCAGGAACAAGCTGCATCCTTGGGC...CTCTGAGAAGTCTCCTAGCTGGGAGAGCTGAACCCCAAGGTAGAGGTGCCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp GGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGGAAAACAAGGGCAAAGTGCAATCTGTCTCCTGCCCTTaGGCGAGGCCGTCCAGCTCA +
Preference number: 3 (lower is better)
Translates to: GPSLRPMTAQKENKGKVQSVSCP*ARPSSS
Trigger: TGAGCTGGACGGCCTCGCCAAAGGGCAGGAGACAGA...TTGCACTTTGCCCTTGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 72 bp GGCCTCAGGGAGATGGAGACACCTGGGCACCCTTCCTaGCAGCTGAAGCCTCTCAGACATTCAGGACAGAGA +
Preference number: 3 (lower is better)
Translates to: GLREMETPGHPS*QLKPLRHSGQR
Trigger: TCTCTGTCCTGAATGTCTGAGAGGCTTCAGCTGTCAGGAAGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 72 bp AAGGGCAGAGCACCCTTGGTGAAGCACTGCTCCTCCTaGGGTGGGTTGTGTGATCCCCTGCTTAGCCTGAGA +
Preference number: 3 (lower is better)
Translates to: KGRAPLVKHCSS*GGLCDPLLSLR
Trigger: TCTCAGGCTAAGCAGGGGATCACACAACCCACCTCAGGAGGAGCAGTGCTTCACCAAGGGTGCTCTGCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 72 bp TCTCCAGCAGCCGAGCCAGACTGGCCAGGTGGTCAATaGAGCCGTTGGTATCTGGTACGAGGAACAAGGGTC +
Preference number: 3 (lower is better)
Translates to: SPAAEPDWPGGQ*SRWYLVRGTRV
Trigger: GACCCTTGTTCCTCGTACCAGATACCAACGGCTTCATTGACCACCTGGCCAGTCTGGCTCGGCTGCTGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 72 bp GGTTTATTGTCTGGGTGGATTGGTAGCTCAGGCACGTaGACATCTTCCGTGTTACACTGGGCGCCTGGCGGC +
Preference number: 3 (lower is better)
Translates to: GLLSGWIGSSGT*TSSVLHWAPGG
Trigger: GCCGCCAGGCGCCCAGTGTAACACGGAAGATGTCCACGTGCCTGAGCTACCAATCCACCCAGACAATAAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 72 bp CCCTGGGACCAGATAGAGGGAAAAAGGGTGGGAGCTTaGTGGCCTACTCGGCTTGTCCACCTGTTGTCACTG +
Preference number: 3 (lower is better)
Translates to: PWDQIEGKRVGA*WPTRLVHLLSL
Trigger: CAGTGACAACAGGTGGACAAGCCGAGTAGGCCACCAAGCTCCCACCCTTTTTCCCTCTATCTGGTCCCAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp CCAGCTAGGAGACTTCTCAGAGGTGTGACGGGTTGGGAAGGAAGGACAGCTGGGTATTGTCTGGGTGGATaGGTAGCTCAGGCACGTGGA +
Preference number: 3 (lower is better)
Translates to: PARRLLRGVTGWEGRTAGYCLGG*VAQARG
Trigger: TCCACGTGCCTGAGCTACCAATCCACCCAGACAATA...CCCAGCTGTCCTTCCTTCCCAACCCGTCACACCTCTGAGAAGTCTCCTAGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 72 bp CGGGCCCAAGACCAGATGGCCCTTCCCTTAGGCCCATaGCTGCCCAAAAGGAAAACAAGGGCAAAGTGCAAG +
Preference number: 3 (lower is better)
Translates to: RAQDQMALPLGP*LPKRKTRAKCK
Trigger: CTTGCACTTTGCCCTTGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCCATCTGGTCTTGGGCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 72 bp GGTAGCCAAGCATCCAATCAGACCAGACTTTCACACTaGGGAGCAGCTCCTTCAGGTCCGGGACGAAGGAAG +
Preference number: 3 (lower is better)
Translates to: GSQASNQTRLSH*GAAPSGPGRRK
Trigger: CTTCCTTCGTCCCGGACCTGAAGGAGCTGCTCCCCAGTGTGAAAGTCTGGTCTGATTGGATGCTTGGCTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp CTTCCCATTTCCTTTCCCATGGTGTCTGGGACGGGTGCCACTGACACATATTTTGTGCGTGCGTGTGTGTaGAAGGGCGAGGGCTGCTGT +
Preference number: 3 (lower is better)
Translates to: LPISFPMVSGTGATDTYFVRACV*KGEGCC
Trigger: ACAGCAGCCCTCGCCCTTCAACACACACGCACGCAC...AAAATATGTGTCAGTGGCACCCGTCCCAGACACCATGGGAAAGGAAATGGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 72 bp GGCCCCATGTCCCCTCTTCTGGGTAAAGAAGTACAATaGCAAAGCCAGAAACGGGCTCAACACCCTGGCACC +
Preference number: 3 (lower is better)
Translates to: GPMSPLLGKEVQ*QSQKRAQHPGT
Trigger: GGTGCCAGGGTGTTGAGCCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACATGGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 72 bp CCTCCTGAGGTGGGTTGTGTGATCCCCTGCTTAGCCTaGGACAGCCTTCTCAATCCTCCTCTACCTCTTTGC +
Preference number: 3 (lower is better)
Translates to: PPEVGCVIPCLA*DSLLNPPLPLC
Trigger: GCAAAGAGGTAGAGGAGGATTGAGAAGGCTGTCTCAGGCTAAGCAGGGGATCACACAACCCACCTCAGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 72 bp GCAGCTCCTTCAGGTCCGGGACGAAGGAAGATACCTTaGTGTCATCTTGGTCCTCTTGGTCCTCAGGAGAGG +
Preference number: 3 (lower is better)
Translates to: AAPSGPGRRKIP*CHLGPLGPQER
Trigger: CCTCTCCTGAGGACCAAGAGGACCAAGATGACATCAAGGTATCTTCCTTCGTCCCGGACCTGAAGGAGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 72 bp CACAGCAACCTGCAAGGGCAGATCCAAAGATGTGGGTaGAGGATTCCAGGTGTCTGGGTAGCCAAGCATCCA +
Preference number: 3 (lower is better)
Translates to: HSNLQGQIQRCG*RIPGVWVAKHP
Trigger: TGGATGCTTGGCTACCCAGACACCTGGAATCCTCCACCCACATCTTTGGATCTGCCCTTGCAGGTTGCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 72 bp CATCCACAGCAACCTGCAAGGGCAGATCCAAAGATGTaGGTGGAGGATTCCAGGTGTCTGGGTAGCCAAGCA +
Preference number: 3 (lower is better)
Translates to: HPQQPARADPKM*VEDSRCLGSQA
Trigger: TGCTTGGCTACCCAGACACCTGGAATCCTCCACCCACATCTTTGGATCTGCCCTTGCAGGTTGCTGTGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 72 bp CTGGGACGGGTGCCACTGACACATATTTTCCACCCTTaGATGCCAGCAGAGGCTCTTCTTGTCCACAAAGGG +
Preference number: 3 (lower is better)
Translates to: LGRVPLTHIFHP*MPAEALLVHKG
Trigger: CCCTTTGTGGACAAGAAGAGCCTCTGCTGGCATTCAAGGGTGGAAAATATGTGTCAGTGGCACCCGTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 72 bp GGCGTGAGGTTGGAAGAGGATGGTTTATTGTCTGGGTaGATTGGTAGCTCAGGCACGTGGACATCTTCCGTG +
Preference number: 3 (lower is better)
Translates to: GVRLEEDGLLSG*IGSSGTWTSSV
Trigger: CACGGAAGATGTCCACGTGCCTGAGCTACCAATCCACCCAGACAATAAACCATCCTCTTCCAACCTCACGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 72 bp CAGACTGGCCAGGTGGTCAATGAAGCCGTTGGTATCTaGTACGAGGAACAAGGGTCTGATCTCCAGCTCCAT +
Preference number: 3 (lower is better)
Translates to: QTGQVVNEAVGI*YEEQGSDLQLH
Trigger: ATGGAGCTGGAGATCAGACCCTTGTTCCTCGTACCAGATACCAACGGCTTCATTGACCACCTGGCCAGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp GTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCGGCCACGGCGTGAGGTaGGAAGAGGATGGTTTATTG +
Preference number: 3 (lower is better)
Translates to: VGQKEERYSSIPNPPTPSGHGVR*EEDGLL
Trigger: CAATAAACCATCCTCTTCCAACCTCACGCCGTGGCC...GCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp CCCTGGCACCTCTACCTTGGGGTTCAGCTCTCCCAGCTAGGAGACTTCTCAGAGATGCTGCAGCAATACTaGGAACTCCTTAAGGACCTT +
Preference number: 3 (lower is better)
Translates to: PWHLYLGVQLSQLGDFSEMLQQY*ELLKDL
Trigger: AAGGTCCTTAAGGAGTTCCAAGTATTGCTGCAGCAT...CTCTGAGAAGTCTCCTAGCTGGGAGAGCTGAACCCCAAGGTAGAGGTGCCAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp GGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGGAAAACAAGGGCAAAGTGCAATCATCATCTGGGTCCTaGTACAGTGGCACCTCAGAC +
Preference number: 3 (lower is better)
Translates to: GPSLRPMTAQKENKGKVQSSSGS*YSGTSD
Trigger: GTCTGAGGTGCCACTGTACAAGGACCCAGATGATGA...TTGCACTTTGCCCTTGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 72 bp CATTTCCTTTCCCATGGTGTCTGGGACGGGTGCCACTaGCACATATTTTCCACCCTTGAATGCCAGCAGAGG +
Preference number: 3 (lower is better)
Translates to: HFLSHGVWDGCH*HIFSTLECQQR
Trigger: CCTCTGCTGGCATTCAAGGGTGGAAAATATGTGTCAGTGGCACCCGTCCCAGACACCATGGGAAAGGAAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR GCA 72 bp TCCAAAACAGCCTGGATCTTTTCCTGGCGACGCTGCTaGTCAGCTATCTTCCTTGCTAGAGCCAGCTTCTTG +
Preference number: 3 (lower is better)
Translates to: SKTAWIFSWRRC*SAIFLARASFL
Trigger: CAAGAAGCTGGCTCTAGCAAGGAAGATAGCTGAGCAGCAGCGTCGCCAGGAAAAGATCCAGGCTGTTTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 72 bp TCTCAGAGGTGTGACGGGTTGGGAAGGAAGGACAGCTaGGAAGGCTTTATTTGGTTCCTGTCACAGGTGGTA +
Preference number: 3 (lower is better)
Translates to: SQRCDGLGRKDS*EGFIWFLSQVV
Trigger: TACCACCTGTGACAGGAACCAAATAAAGCCTTCCCAGCTGTCCTTCCTTCCCAACCCGTCACACCTCTGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp GCCCCATGTCCCCTCTTCTGGGTAAAGAAGTACAATGACAAAGCCAGAAACGGGTATTGTCTGGGTGGATaGGTAGCTCAGGCACGTGGA +
Preference number: 3 (lower is better)
Translates to: APCPLFWVKKYNDKARNGYCLGG*VAQARG
Trigger: TCCACGTGCCTGAGCTACCAATCCACCCAGACAATA...CCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACATGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp AAGGCGATAGATTCAAGTTCATTGCCACGGCTGGTCAAGGCCCGCAGGCAGGAGAGAAATCAGCTAGTGTaGACCAGACATCCACAGCAA +
Preference number: 3 (lower is better)
Translates to: KAIDSSSLPRLVKARRQERNQLV*TRHPQQ
Trigger: TTGCTGTGGATGTCTGGTCAACACTAGCTGATTTCT...CTCCTGCCTGCGGGCCTTGACCAGCCGTGGCAATGAACTTGAATCTATCGCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 72 bp CAGCCTTCTCAATCCTCCTCTACCTCTTTGCTAGACTaGAGGAATTCATTCCTGGTCGGGAGCCTCCAAGTG +
Preference number: 3 (lower is better)
Translates to: QPSQSSSTSLLD*RNSFLVGSLQV
Trigger: CACTTGGAGGCTCCCGACCAGGAATGAATTCCTTCAGTCTAGCAAAGAGGTAGAGGAGGATTGAGAAGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR TCA 72 bp TGCAGCTTGTTCCTGGATCACAGAACGACACTCCTCTaGGAAGCAGTCTTTCAACTGGGAGTTATGCACGGC +
Preference number: 3 (lower is better)
Translates to: CSLFLDHRTTLL*EAVFQLGVMHG
Trigger: GCCGTGCATAACTCCCAGTTGAAAGACTGCTTCTCAGAGGAGTGTCGTTCTGTGATCCAGGAACAAGCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 72 bp GGGTTGGGAAGGAAGGACAGCTGGGAAGGCTTTATTTaGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGA +
Preference number: 3 (lower is better)
Translates to: GLGRKDSWEGFI*FLSQVVGVRFR
Trigger: TCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCCCAGCTGTCCTTCCTTCCCAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 72 bp CAGATCCAAAGATGTGGGTGGAGGATTCCAGGTGTCTaGGTAGCCAAGCATCCAATCAGACCAGACTTTCAC +
Preference number: 3 (lower is better)
Translates to: QIQRCGWRIPGV*VAKHPIRPDFH
Trigger: GTGAAAGTCTGGTCTGATTGGATGCTTGGCTACCCAGACACCTGGAATCCTCCACCCACATCTTTGGATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 72 bp AGTCCCGACTCTCAAATCTCCGTTCGAGGAACTCAATaGATTTTCGGGCCTTTTCTTGCACCACACGGGCAT +
Preference number: 3 (lower is better)
Translates to: SPDSQISVRGTQ*IFGPFLAPHGH
Trigger: ATGCCCGTGTGGTGCAAGAAAAGGCCCGAAAATCCATTGAGTTCCTCGAACGGAGATTTGAGAGTCGGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp GTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAATACCTTGATGTCATCTaGGTCCTCTTGGTCCTCAGG +
Preference number: 3 (lower is better)
Translates to: VPVTGGRGKIQNEKSHKEYLDVI*VLLVLR
Trigger: CCTGAGGACCAAGAGGACCAAGATGACATCAAGGTA...TTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR GCA 72 bp AAAGAAGAGTCTGAGGAAATTTCCCCAAGAGGGTACTaGAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGC +
Preference number: 3 (lower is better)
Translates to: KEESEEISPRGY*SERKAKDGSMC
Trigger: GCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCAGTACCCTCTTGGGGAAATTTCCTCAGACTCTTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 72 bp GAAAACATAGCCAAGCCCAAGGATGCAGCTTGTTCCTaGATCACAGAACGACACTCCTCTGAGAAGCAGTCT +
Preference number: 3 (lower is better)
Translates to: ENIAKPKDAACS*ITERHSSEKQS
Trigger: AGACTGCTTCTCAGAGGAGTGTCGTTCTGTGATCCAGGAACAAGCTGCATCCTTGGGCTTGGCTATGTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CCA 72 bp GCTTTAGCAGAGTCCTTAAGTAGGCATGTGCAGCGCTaGACCAGTAGAGAAAACATAGCCAAGCCCAAGGAT +
Preference number: 3 (lower is better)
Translates to: ALAESLSRHVQR*TSRENIAKPKD
Trigger: ATCCTTGGGCTTGGCTATGTTTTCTCTACTGGTCCAGCGCTGCACATGCCTACTTAAGGACTCTGCTAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp AGAAAATACTTCAGCACTGTGACCCTTTTGCAGTCAGCTGCAATAACCTTATCCGGGCGAGGGCTGCTGTaGCTGTTACAGACAGAAGTC +
Preference number: 3 (lower is better)
Translates to: RKYFSTVTLLQSAAITLSGRGLL*LLQTEV
Trigger: GACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCCC...GGATAAGGTTATTGCAGCTGACTGCAAAAGGGTCACAGTGCTGAAGTATTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp GACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCAATAGCACTGTGACCCTTTaGCAGTCAGCTGCAATAACC +
Preference number: 3 (lower is better)
Translates to: DRKKKGILPFPIPQPPANSTVTL*QSAAIT
Trigger: GGTTATTGCAGCTGACTGCAAAAGGGTCACAGTGCT...ATTGGCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR GCA 72 bp TGCAGCATACGGGTACTTCCAATAGGAGATGGGCTATaGTGCAGCAATACTTGGAACTCCTTAAGGACCTTC +
Preference number: 3 (lower is better)
Translates to: CSIRVLPIGDGL*CSNTWNSLRTF
Trigger: GAAGGTCCTTAAGGAGTTCCAAGTATTGCTGCAGCATAGCCCATCTCCTATTGGAAGTACCCGTATGCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR-3UTR CAA 90 bp GGAAGGCTTTATTTGGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGGAAGAGGATGGTTTATaGTCTGGGTGGATTGGTAGC +
Preference number: 3 (lower is better)
Translates to: GRLYLVPVTGGRGKIQNEEEDGL*SGWIGS
Trigger: GCTACCAATCCACCCAGACAATAAACCATCCTCTTC...CTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CCA 72 bp CATAAGCTGCAGCATACGGGTACTTCCAATAGGAGATaGGCTATGCTGCAGCAATACTTGGAACTCCTTAAG +
Preference number: 3 (lower is better)
Translates to: HKLQHTGTSNRR*AMLQQYLELLK
Trigger: CTTAAGGAGTTCCAAGTATTGCTGCAGCATAGCCCATCTCCTATTGGAAGTACCCGTATGCTGCAGCTTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 72 bp TCATCATCTGGGTCCTTGTACAGTGGCACCTCAGACTaGTTGACTGCAGTCAGTATGTTACAGAAATCAGCT +
Preference number: 3 (lower is better)
Translates to: SSSGSLYSGTSD*LTAVSMLQKSA
Trigger: AGCTGATTTCTGTAACATACTGACTGCAGTCAATCAGTCTGAGGTGCCACTGTACAAGGACCCAGATGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR TCA 72 bp AGACATTCAGGACAGAGACTGTGCAGACTGAGGGGTTaGTCAGTTTCCTTGCATCTAATGGAAACTTTAGAA +
Preference number: 3 (lower is better)
Translates to: RHSGQRLCRLRG*SVSLHLMETLE
Trigger: TTCTAAAGTTTCCATTAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCACAGTCTCTGTCCTGAATGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp ATCTTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTCGTGGCCTCTCCTTaGCCCGATCCTGGCGCCGCC +
Preference number: 4 (lower is better)
Translates to: IFRVTLGAWRPLRNGSMGVVASP*PDPGAA
Trigger: GGCGGCGCCAGGATCGGGCCAAGGAGAGGCCACGAC...CCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp CGCACGGGCCCAAGACCAGATGGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGTGGCCCGAAGTTCCCTaGTGTCATCCTCACCCCCAC +
Preference number: 4 (lower is better)
Translates to: RTGPRPDGPSLRPMTAQKWPEVP*CHPHPH
Trigger: GTGGGGGTGAGGATGACATCAGGGAACTTCGGGCCA...CTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCCATCTGGTCTTGGGCCCGTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp TTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGCGAGGAACAAGGGTCTaGTCTCCAGCTCCATCTGCC +
Preference number: 4 (lower is better)
Translates to: FRVTLGAWRPLRNGSMGVRGTRV*SPAPSA
Trigger: GGCAGATGGAGCTGGAGATCAGACCCTTGTTCCTCG...CACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp AGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGTCCCAGCAGTTTCCGCCGTTCATTGCCACGGCTaGTCAAGGCCCGCAGGCAGG +
Preference number: 4 (lower is better)
Translates to: SHLPAKSWQPRRVPAVSAVHCHG*SRPAGR
Trigger: CCTGCCTGCGGGCCTTGACCAGCCGTGGCAATGAAC...GGCGGAAACTGCTGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp TGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGGGCCCCACATTATCTTTGACTaGCCTCACCACAGGGGAGTC +
Preference number: 4 (lower is better)
Translates to: CYTGRLAASQEWLHGGGPHIIFD*PHHRGV
Trigger: GACTCCCCTGTGGTGAGGTCAGTCAAAGATAATGTG...GGGCCCACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp TGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGGGCCCAGTGGCACCTCAGACTaGTTGACTGCAGTCAGTATG +
Preference number: 4 (lower is better)
Translates to: CYTGRLAASQEWLHGGGPSGTSD*LTAVSM
Trigger: CATACTGACTGCAGTCAATCAGTCTGAGGTGCCACT...GGGCCCACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp CGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACCCTCATCCTCACCCCCACTaGCTTCAGCCTCTGAATCTT +
Preference number: 4 (lower is better)
Translates to: RGSTGHLGLREMETPGHPHPHPH*LQPLNL
Trigger: AAGATTCAGAGGCTGAAGGCAGTGGGGGTGAGGATG...AGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp TGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGGGCCCGCAGATCCAAAGATGTaGGTGGAGGATTCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: CYTGRLAASQEWLHGGGPADPKM*VEDSRC
Trigger: ACACCTGGAATCCTCCACCCACATCTTTGGATCTGC...GGGCCCACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
3UTR CAA 72 bp GGAGCGGCTCCCCCACAGCACGGCCACGGCGTGAGGTaGGAAGAGGATGGTTTATTGTCTGGGTGGATTGGT +
Preference number: 4 (lower is better)
Translates to: GAAPPQHGHGVR*EEDGLLSGWIG
Trigger: ACCAATCCACCCAGACAATAAACCATCCTCTTCCAACCTCACGCCGTGGCCGTGCTGTGGGGGAGCCGCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp AGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGTCCCAGCAGTTTCCGCCCTTGTCTCGGGTGTCTaGGCTCCTGCTTCTCAGAGC +
Preference number: 4 (lower is better)
Translates to: SHLPAKSWQPRRVPAVSALVSGV*APASQS
Trigger: GCTCTGAGAAGCAGGAGCTCAGACACCCGAGACAAG...GGCGGAAACTGCTGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp GTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACCCTTCCTGAGTTCAGTTCTGAGCTaGGCCATCTTCTCCATGCCC +
Preference number: 4 (lower is better)
Translates to: VHRASGPQGDGDTWAPFLSSVLS*AIFSMP
Trigger: GGGCATGGAGAAGATGGCTCAGCTCAGAACTGAACT...CAGGAAGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp TGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGGGCCCGCACCTCAGACTGATTaGCTGCAGTCAGTATGTTAC +
Preference number: 4 (lower is better)
Translates to: CYTGRLAASQEWLHGGGPAPQTD*LQSVCY
Trigger: GTAACATACTGACTGCAGTCAATCAGTCTGAGGTGC...GGGCCCACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp GTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACCCTTCCTGTGGGACGGGTGCCACTaGCACATATTTTCCACCCTT +
Preference number: 4 (lower is better)
Translates to: VHRASGPQGDGDTWAPFLWDGCH*HIFSTL
Trigger: AAGGGTGGAAAATATGTGTCAGTGGCACCCGTCCCA...CAGGAAGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp CGCACGGGCCCAAGACCAGATGGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGTGGAGCTCCTGTTGCTaGATGTTCCGCACGTGCTGT +
Preference number: 4 (lower is better)
Translates to: RTGPRPDGPSLRPMTAQKWSSCC*MFRTCC
Trigger: ACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCA...CTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCCATCTGGTCTTGGGCCCGTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp CAGCGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACTTTAGGGCAGGCTTCTaGTCAGGATTGTTTGGGTCC +
Preference number: 4 (lower is better)
Translates to: QRGSTGHLGLREMETPGHFRAGF*SGLFGS
Trigger: GGACCCAAACAATCCTGACCAGAAGCCTGCCCTAAA...GTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp CGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACCCTAGGATTCCAGGTGTCTaGGTAGCCAAGCATCCAATC +
Preference number: 4 (lower is better)
Translates to: RGSTGHLGLREMETPGHPRIPGV*VAKHPI
Trigger: GATTGGATGCTTGGCTACCCAGACACCTGGAATCCT...AGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp CAGGCACGTGGACATCTTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAAATCTGCCCTGCCTGCTaGCTCTTTGGTAATGGTCTG +
Preference number: 4 (lower is better)
Translates to: QARGHLPCYTGRLAASQEICPAC*LFGNGL
Trigger: CAGACCATTACCAAAGAGTCAGCAGGCAGGGCAGAT...TTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGATGTCCACGTGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp CAGGCACGTGGACATCTTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAAGAGAACCTGATGAACTaGCAGATAGGGCAGTGTGGG +
Preference number: 4 (lower is better)
Translates to: QARGHLPCYTGRLAASQEENLMN*QIGQCG
Trigger: CCCACACTGCCCTATCTGTCAGTTCATCAGGTTCTC...TTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGATGTCCACGTGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp CAGGCACGTGGACATCTTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGAAAGCAGGTTGCTaGGCTGCAGTTCCTGGTTGT +
Preference number: 4 (lower is better)
Translates to: QARGHLPCYTGRLAASQEWKAGC*AAVPGC
Trigger: ACAACCAGGAACTGCAGCTCAGCAACCTGCTTTCCA...TTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGATGTCCACGTGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp CAGCGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACCGAGAATGTGATGGATaGATCCAAATCTCCAGGCGA +
Preference number: 4 (lower is better)
Translates to: QRGSTGHLGLREMETPGHRECDG*IQISRR
Trigger: TCGCCTGGAGATTTGGATTCATCCATCACATTCTCG...GTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp TGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGGGCCCATAGGAGATGGGCTATaGTGCAGCAATACTTGGAAC +
Preference number: 4 (lower is better)
Translates to: CYTGRLAASQEWLHGGGPIGDGL*CSNTWN
Trigger: GTTCCAAGTATTGCTGCAGCATAGCCCATCTCCTAT...GGGCCCACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp AGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGTCCCAGCAGTTTCCGCCCTGAGCTGCAGTTCCTaGTTGTCAGCCACTCGGAGA +
Preference number: 4 (lower is better)
Translates to: SHLPAKSWQPRRVPAVSALSCSS*LSATRR
Trigger: TCTCCGAGTGGCTGACAACCAGGAACTGCAGCTCAG...GGCGGAAACTGCTGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp TGGTCAAGGCCCGCAGGCAGGAGTCCCGACTCTCAAATCTCCGTTCGAGGAACTAGGGGCGCCCATTCTTaGGAGCAATGTGCTGAGCCT +
Preference number: 4 (lower is better)
Translates to: WSRPAGRSPDSQISVRGTRGAHS*EQCAEP
Trigger: AGGCTCAGCACATTGCTCCCAAGAATGGGCGCCCCT...AGTTCCTCGAACGGAGATTTGAGAGTCGGGACTCCTGCCTGCGGGCCTTGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp CAGCGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACACCTTGATGTCATCTTaGTCCTCTTGGTCCTCAGGA +
Preference number: 4 (lower is better)
Translates to: QRGSTGHLGLREMETPGHTLMSS*SSWSSG
Trigger: TCCTGAGGACCAAGAGGACCAAGATGACATCAAGGT...GTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp TGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGGCCTGGATCTTTTCCTaGCGACGCTGCTGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: CSERKAKDGSMCWWRATQAWIFS*RRCCSA
Trigger: AGCTGAGCAGCAGCGTCGCCAGGAAAAGATCCAGGC...CTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp CCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGTCCCAGCAGTTTCCGAGTTCAGTTCTGAGCTaGGCCATCTTCTCCATGCCC +
Preference number: 4 (lower is better)
Translates to: PVTSLLNLGSPGGSQQFPSSVLS*AIFSMP
Trigger: GGGCATGGAGAAGATGGCTCAGCTCAGAACTGAACT...CGGAAACTGCTGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp CCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGTCCCAGCAGTTTCCGTGGCCAGGTGGTCAATaGAGCCGTTGGTATCTGGTA +
Preference number: 4 (lower is better)
Translates to: PVTSLLNLGSPGGSQQFPWPGGQ*SRWYLV
Trigger: TACCAGATACCAACGGCTTCATTGACCACCTGGCCA...CGGAAACTGCTGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp GGCGAGGGCTGCTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGCACCTCAGCACTGTTGTTaGTACCAGCTGAGCTGGTAC +
Preference number: 4 (lower is better)
Translates to: GEGCCCCYRQKSAWVHRAPQHCC*YQLSWY
Trigger: GTACCAGCTCAGCTGGTAGCAACAACAGTGCTGAGG...TGCCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp CCTGTTGTCACTGTAGCCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGGGTGTCTGAGCTCCTaGTTCTCAGAGCCCTTACCC +
Preference number: 4 (lower is better)
Translates to: PVVTVASHLPAKSWQPRRGCLSS*FSEPLP
Trigger: GGGTAAGGGCTCTGAGAAGCAGGAGCTCAGACACCC...CCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGGCTACAGTGACAACAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp AGGGCGAGGGCTGCTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGCAGAGGGCTATAGCCTaGATAGGGATACTGAGAGGC +
Preference number: 4 (lower is better)
Translates to: RARAAVAVTDRSQRGSTGQRAIA*IGILRG
Trigger: GCCTCTCAGTATCCCTATGCAGGCTATAGCCCTCTG...CCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp CCAGCTAGGAGACTTCTCAGAGGTGTGACGGGTTGGGAAGGAAGGACAGCTGGGACTCGGAGAAGCCGATaGAGCTCCTGTTGCTGCATG +
Preference number: 4 (lower is better)
Translates to: PARRLLRGVTGWEGRTAGTRRSR*SSCCCM
Trigger: CATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGT...CCCAGCTGTCCTTCCTTCCCAACCCGTCACACCTCTGAGAAGTCTCCTAGCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp TGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGGCCAGACTGGCCAGGTaGTCAATGAAGCCGTTGGTA +
Preference number: 4 (lower is better)
Translates to: CSERKAKDGSMCWWRATQARLAR*SMKPLV
Trigger: TACCAACGGCTTCATTGACCACCTGGCCAGTCTGGC...CTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
3UTR CAA 72 bp GCCCTGGGACCAGATAGAGGGAAAAAGGGTGGGAGCTaGGTGGCCTACTCGGCTTGTCCACCTGTTGTCACT +
Preference number: 4 (lower is better)
Translates to: ALGPDRGKKGGS*VAYSACPPVVT
Trigger: AGTGACAACAGGTGGACAAGCCGAGTAGGCCACCAAGCTCCCACCCTTTTTCCCTCTATCTGGTCCCAGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp CGCACGGGCCCAAGACCAGATGGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGAGAACGACACTCCTCTaGGAAGCAGTCTTTCAACTG +
Preference number: 4 (lower is better)
Translates to: RTGPRPDGPSLRPMTAQKRTTLL*EAVFQL
Trigger: CAGTTGAAAGACTGCTTCTCAGAGGAGTGTCGTTCT...CTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCCATCTGGTCTTGGGCCCGTGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp GCCCCATGTCCCCTCTTCTGGGTAAAGAAGTACAATGACAAAGCCAGAAACGGGCCCTCGCAGTTCCGATaGGGAGATCCGCACACGCTC +
Preference number: 4 (lower is better)
Translates to: APCPLFWVKKYNDKARNGPSQFR*GDPHTL
Trigger: GAGCGTGTGCGGATCTCCGCATCGGAACTGCGAGGG...CCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACATGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp TGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGGGCCCTGGAAAAGTTTCCTGTaGCTGACTATTTTCTGCATC +
Preference number: 4 (lower is better)
Translates to: CYTGRLAASQEWLHGGGPWKSFL*LTIFCI
Trigger: GATGCAGAAAATAGTCAGGCACAGGAAACTTTTCCA...GGGCCCACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp CCTGTTGTCACTGTAGCCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGCAGCTGAGCTGGTACTaGAAGTGCGGTAGCGATTCC +
Preference number: 4 (lower is better)
Translates to: PVVTVASHLPAKSWQPRRQLSWY*KCGSDS
Trigger: GGAATCGCTACCGCACTTGCAGTACCAGCTCAGCTG...CCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGGCTACAGTGACAACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp ATCTTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGCTGTATCGTTGGCTTaGTCCCGATACCTAGAGATA +
Preference number: 4 (lower is better)
Translates to: IFRVTLGAWRPLRNGSMGAVSLA*SRYLEI
Trigger: TATCTCTAGGTATCGGGAGCAAGCCAACGATACAGC...CCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp AGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGTCCCAGCAGTTTCCGCCTTTTCCTGGCGACGCTaGTGCTCAGCTATCTTCCTT +
Preference number: 4 (lower is better)
Translates to: SHLPAKSWQPRRVPAVSAFSWRR*CSAIFL
Trigger: AAGGAAGATAGCTGAGCAGCAGCGTCGCCAGGAAAA...GGCGGAAACTGCTGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp CCTGTTGTCACTGTAGCCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGTGCTACCAGCTGAGCTaGTACTGCAAGTGCGGTAGC +
Preference number: 4 (lower is better)
Translates to: PVVTVASHLPAKSWQPRRCYQLS*YCKCGS
Trigger: GCTACCGCACTTGCAGTACCAGCTCAGCTGGTAGCA...CCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGGCTACAGTGACAACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp AAGTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCATCCTTGGCCCGATCCTaGCGCCGCCGGCGACATCCA +
Preference number: 4 (lower is better)
Translates to: KWDRKKKGILPFPIPQPPSLARS*RRRRHP
Trigger: TGGATGTCGCCGGCGGCGCCAGGATCGGGCCAAGGA...TGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCACTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp CCTGTTGTCACTGTAGCCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGCTGAGCTGCAGTTCCTaGTTGTCAGCCACTCGGAGA +
Preference number: 4 (lower is better)
Translates to: PVVTVASHLPAKSWQPRRLSCSS*LSATRR
Trigger: TCTCCGAGTGGCTGACAACCAGGAACTGCAGCTCAG...CCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGGCTACAGTGACAACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp AGGGCGAGGGCTGCTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGATCCAAAGATGTGGGTaGAGGATTCCAGGTGTCTGG +
Preference number: 4 (lower is better)
Translates to: RARAAVAVTDRSQRGSTGIQRCG*RIPGVW
Trigger: CCAGACACCTGGAATCCTCCACCCACATCTTTGGAT...CCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
3UTR CAA 72 bp CACGGCCACGGCGTGAGGTTGGAAGAGGATGGTTTATaGTCTGGGTGGATTGGTAGCTCAGGCACGTGGACA +
Preference number: 4 (lower is better)
Translates to: HGHGVRLEEDGL*SGWIGSSGTWT
Trigger: TGTCCACGTGCCTGAGCTACCAATCCACCCAGACAATAAACCATCCTCTTCCAACCTCACGCCGTGGCCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CAA 72 bp AGCCGAGCCAGACTGGCCAGGTGGTCAATGAAGCCGTaGGTATCTGGTACGAGGAACAAGGGTCTGATCTCC +
Preference number: 4 (lower is better)
Translates to: SRARLARWSMKP*VSGTRNKGLIS
Trigger: GGAGATCAGACCCTTGTTCCTCGTACCAGATACCAACGGCTTCATTGACCACCTGGCCAGTCTGGCTCGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CAA 72 bp ATGTCCTCACTTCGGAAGGCGATAGATTCAAGTTCATaGCCACGGCTGGTCAAGGCCCGCAGGCAGGAGTCC +
Preference number: 4 (lower is better)
Translates to: MSSLRKAIDSSS*PRLVKARRQES
Trigger: GGACTCCTGCCTGCGGGCCTTGACCAGCCGTGGCAATGAACTTGAATCTATCGCCTTCCGAAGTGAGGACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp AGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGGACTTGGGAGCAATGTGCTaGGCCTTCAGATACCAACTG +
Preference number: 4 (lower is better)
Translates to: SERKAKDGSMCWWRATQDLGAMC*AFRYQL
Trigger: CAGTTGGTATCTGAAGGCTCAGCACATTGCTCCCAA...GTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp CCCTGGCACCTCTACCTTGGGGTTCAGCTCTCCCAGCTAGGAGACTTCTCAGAGGAGGACAAAGATACCTaGTTCTTCAGTCGTGGCCTC +
Preference number: 4 (lower is better)
Translates to: PWHLYLGVQLSQLGDFSEEDKDT*FFSRGL
Trigger: GAGGCCACGACTGAAGAAGCAGGTATCTTTGTCCTC...CTCTGAGAAGTCTCCTAGCTGGGAGAGCTGAACCCCAAGGTAGAGGTGCCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp AAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCAATGACCCTCACAGCCCTTCCCAGACTCAGTaGCCTGGGCAGACCGAGAAT +
Preference number: 4 (lower is better)
Translates to: KGILPFPIPQPPANDPHSPSQTQ*PGQTEN
Trigger: ATTCTCGGTCTGCCCAGGGCACTGAGTCTGGGAAGG...GCTGTGAGGGTCATTGGCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp CCTGTTGTCACTGTAGCCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGTTTCTGAGCTCCTCCTaGACCCTAGGACATCAGGCT +
Preference number: 4 (lower is better)
Translates to: PVVTVASHLPAKSWQPRRFLSSS*TLGHQA
Trigger: AGCCTGATGTCCTAGGGTCCAGGAGGAGCTCAGAAA...CCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGGCTACAGTGACAACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp CCTGTTGTCACTGTAGCCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGCTGAGAGGCAGGGCCTaGTGTCCGAGGGTAATAATA +
Preference number: 4 (lower is better)
Translates to: PVVTVASHLPAKSWQPRRLRGRA*CPRVII
Trigger: TATTATTACCCTCGGACACCAGGCCCTGCCTCTCAG...CCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGGCTACAGTGACAACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp GGCGAGGGCTGCTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGCAAAGGCTTGCTTCGAATaGCAAGCCCATCCATGTAGT +
Preference number: 4 (lower is better)
Translates to: GEGCCCCYRQKSAWVHRAKACFE*QAHPCS
Trigger: ACTACATGGATGGGCTTGCCATTCGAAGCAAGCCTT...TGCCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp CCTGGATCTTTTCCTGGCGACGCTGCTGCTCAGCTATCTTCCTTGCTAGAGCCACCAGACTCAGTGCCCTaGGCAGACCGAGAATGTGAT +
Preference number: 4 (lower is better)
Translates to: PGSFPGDAAAQLSSLLEPPDSVP*ADRECD
Trigger: ATCACATTCTCGGTCTGCCCAGGGCACTGAGTCTGG...TGGCTCTAGCAAGGAAGATAGCTGAGCAGCAGCGTCGCCAGGAAAAGATCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp CCCTGGCACCTCTACCTTGGGGTTCAGCTCTCCCAGCTAGGAGACTTCTCAGAGTGGGTCCTTGTACAGTaGCACCTCAGACTGATTGAC +
Preference number: 4 (lower is better)
Translates to: PWHLYLGVQLSQLGDFSEWVLVQ*HLRLID
Trigger: GTCAATCAGTCTGAGGTGCCACTGTACAAGGACCCA...CTCTGAGAAGTCTCCTAGCTGGGAGAGCTGAACCCCAAGGTAGAGGTGCCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp CCCTGGCACCTCTACCTTGGGGTTCAGCTCTCCCAGCTAGGAGACTTCTCAGAGTCTTCCAAAACAGCCTaGATCTTTTCCTGGCGACGC +
Preference number: 4 (lower is better)
Translates to: PWHLYLGVQLSQLGDFSESSKTA*IFSWRR
Trigger: GCGTCGCCAGGAAAAGATCCAGGCTGTTTTGGAAGA...CTCTGAGAAGTCTCCTAGCTGGGAGAGCTGAACCCCAAGGTAGAGGTGCCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
3UTR CAA 72 bp CAGGTCCGGGACGAAGGAAGATACCTTGATGTCATCTaGGTCCTCTTGGTCCTCAGGAGAGGACAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: QVRDEGRYLDVI*VLLVLRRGQLS
Trigger: GCTCAGCTGTCCTCTCCTGAGGACCAAGAGGACCAAGATGACATCAAGGTATCTTCCTTCGTCCCGGACCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp CGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACCCTCGGTCATTACTTTGGTaGTTTTCTATCTCGGTTTTA +
Preference number: 4 (lower is better)
Translates to: RGSTGHLGLREMETPGHPRSLLW*FSISVL
Trigger: TAAAACCGAGATAGAAAAGCACCAAAGTAATGACCG...AGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp AGGAAATTTCCCCAAGAGGGTACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCACACTGGGACTCAGGCTaGCCAGACCATTCTCCTGCT +
Preference number: 4 (lower is better)
Translates to: RKFPQEGTAVKGRPRMGAHWDSG*PDHSPA
Trigger: AGCAGGAGAATGGTCTGGGCAGCCTGAGTCCCAGTG...TGCTCCCATCCTTGGCCTTCCTTTCACTGCAGTACCCTCTTGGGGAAATTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp AAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCAATGACCCTCACAGCTCCTGGCGACGCTGCTaGTCAGCTATCTTCCTTGCT +
Preference number: 4 (lower is better)
Translates to: KGILPFPIPQPPANDPHSSWRRC*SAIFLA
Trigger: AGCAAGGAAGATAGCTGAGCAGCAGCGTCGCCAGGA...GCTGTGAGGGTCATTGGCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp CCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAACTGCCAGGATGTACTTCCTaGTCTCCAGCAGCCGAGCCA +
Preference number: 4 (lower is better)
Translates to: PVTGGRGKIQNEKSHKELPGCTS*SPAAEP
Trigger: TGGCTCGGCTGCTGGAGAGCAGGAAGTACATCCTGG...CAGTTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp GACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCAATCCTGCGGAGCCAGAGTaGCCAGGATCCCTCGCAGTT +
Preference number: 4 (lower is better)
Translates to: DRKKKGILPFPIPQPPANPAEPE*PGSLAV
Trigger: AACTGCGAGGGATCCTGGCCACTCTGGCTCCGCAGG...ATTGGCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp AGGGCGAGGGCTGCTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGTTCCCTTTTCTCCCTTaGCAGTTCTTACACGGTCAT +
Preference number: 4 (lower is better)
Translates to: RARAAVAVTDRSQRGSTGFPFLP*QFLHGH
Trigger: ATGACCGTGTAAGAACTGCCAAGGGAGAAAAGGGAA...CCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp AGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGGACTGGGTTCTCACTGTTTaGATCCTTGAGAAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: SERKAKDGSMCWWRATQDWVLTV*ILEKLP
Trigger: AGGCAGCTTCTCAAGGATCCAAACAGTGAGAACCCA...GTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp ACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGCTTCCCATGGGCATaGAGAAAACTGAGGATGAAC +
Preference number: 4 (lower is better)
Translates to: TAVKGRPRMGACAGGGPLSFPWA*RKLRMN
Trigger: GTTCATCCTCAGTTTTCTCCATGCCCATGGGAAGCT...GAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp TCTTCCAGGATAAGCAGGGTGAGGTCATCATCTGGGTCCTTGTACAGTGGCACCTGTCTCCATCATCACTaGGACTCAGGCTGCCCAGAC +
Preference number: 4 (lower is better)
Translates to: SSRISRVRSSSGSLYSGTCLHHH*DSGCPD
Trigger: GTCTGGGCAGCCTGAGTCCCAGTGATGATGGAGACA...GGTGCCACTGTACAAGGACCCAGATGATGACCTCACCCTGCTTATCCTGGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CAA 72 bp AGCAGCTCCTTCAGGTCCGGGACGAAGGAAGATACCTaGATGTCATCTTGGTCCTCTTGGTCCTCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: SSSFRSGTKEDT*MSSWSSWSSGE
Trigger: CTCTCCTGAGGACCAAGAGGACCAAGATGACATCAAGGTATCTTCCTTCGTCCCGGACCTGAAGGAGCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp TGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGTCCAAGAAATGTAGCTaGGGTGTCTGGCTTTTTAGG +
Preference number: 4 (lower is better)
Translates to: CSERKAKDGSMCWWRATQSKKCS*GVWLFR
Trigger: CCTAAAAAGCCAGACACCTCAGCTACATTTCTTGGA...CTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp GACGGGTTGGGAAGGAAGGACAGCTGGGAAGGCTTTATTTGGTTCCTGTCACAGTGGAAAGCAGGTTGCTaGGCTGCAGTTCCTGGTTGT +
Preference number: 4 (lower is better)
Translates to: DGLGRKDSWEGFIWFLSQWKAGC*AAVPGC
Trigger: ACAACCAGGAACTGCAGCTCAGCAACCTGCTTTCCA...CTGTGACAGGAACCAAATAAAGCCTTCCCAGCTGTCCTTCCTTCCCAACCCGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp CCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGTCCCAGCAGTTTCCGTATCTTTGCGCTGTCTaGGTTCCTTTAGTTCCTTCA +
Preference number: 4 (lower is better)
Translates to: PVTSLLNLGSPGGSQQFPYLCAV*VPLVPS
Trigger: TGAAGGAACTAAAGGAACCCAGACAGCGCAAAGATA...CGGAAACTGCTGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp TTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGATAGATTTCCAAATCTaGACGCCTATTATCTTTGCG +
Preference number: 4 (lower is better)
Translates to: FRVTLGAWRPLRNGSMGVIDFQI*TPIIFA
Trigger: CGCAAAGATAATAGGCGTCCAGATTTGGAAATCTAT...CACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp CCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAACTGACTCGGAGAAGCCGATaGAGCTCCTGTTGCTGCATG +
Preference number: 4 (lower is better)
Translates to: PVTGGRGKIQNEKSHKELTRRSR*SSCCCM
Trigger: CATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGT...CAGTTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp CCTGTTGTCACTGTAGCCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGTGGGTTCTCACTGTTTaGATCCTTGAGAAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: PVVTVASHLPAKSWQPRRWVLTV*ILEKLP
Trigger: AGGCAGCTTCTCAAGGATCCAAACAGTGAGAACCCA...CCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGGCTACAGTGACAACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp CCTGTTGTCACTGTAGCCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGAAGGCTTGCTTCGAATaGCAAGCCCATCCATGTAGT +
Preference number: 4 (lower is better)
Translates to: PVVTVASHLPAKSWQPRRKACFE*QAHPCS
Trigger: ACTACATGGATGGGCTTGCCATTCGAAGCAAGCCTT...CCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGGCTACAGTGACAACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CAA 72 bp CGGGTTGGGAAGGAAGGACAGCTGGGAAGGCTTTATTaGGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAG +
Preference number: 4 (lower is better)
Translates to: RVGKEGQLGRLY*VPVTGGRGKIQ
Trigger: CTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCCCAGCTGTCCTTCCTTCCCAACCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CAA 72 bp TCTGGGACGGGTGCCACTGACACATATTTTCCACCCTaGAATGCCAGCAGAGGCTCTTCTTGTCCACAAAGG +
Preference number: 4 (lower is better)
Translates to: SGTGATDTYFPP*NASRGSSCPQR
Trigger: CCTTTGTGGACAAGAAGAGCCTCTGCTGGCATTCAAGGGTGGAAAATATGTGTCAGTGGCACCCGTCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp AAGTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCACCTTCATGTTTTCTCTaGTCCCGGCCTGCGGAGCCA +
Preference number: 4 (lower is better)
Translates to: KWDRKKKGILPFPIPQPPPSCFL*SRPAEP
Trigger: TGGCTCCGCAGGCCGGGAGCAGAGAAAACATGAAGG...TGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCACTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp ACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCTTTTTCGTAAAGGCTTaGTTCGAATGGCAAGCCCAT +
Preference number: 4 (lower is better)
Translates to: TAVKGRPRMGACAGGGPLFFVKA*FEWQAH
Trigger: ATGGGCTTGCCATTCGAAGCAAGCCTTTACGAAAAA...GAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp CGCACGGGCCCAAGACCAGATGGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGTCAAATTCCTCATGCTaGTTCTTTTCCATCTGTTCA +
Preference number: 4 (lower is better)
Translates to: RTGPRPDGPSLRPMTAQKSNSSC*FFSICS
Trigger: TGAACAGATGGAAAAGAAGCAGCATGAGGAATTTGA...CTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCCATCTGGTCTTGGGCCCGTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp GGAAGGCTTTATTTGGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGCCTTCCCAGACTCAGTaGCCTGGGCAGACCGAGAAT +
Preference number: 4 (lower is better)
Translates to: GRLYLVPVTGGRGKIQNEPSQTQ*PGQTEN
Trigger: ATTCTCGGTCTGCCCAGGGCACTGAGTCTGGGAAGG...CTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp TCTAATGGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCCACTGGGACTCAGGCTaGCCAGACCATTCTCCTGCT +
Preference number: 4 (lower is better)
Translates to: SNGNFRISAPYHYRVAGSHWDSG*PDHSPA
Trigger: AGCAGGAGAATGGTCTGGGCAGCCTGAGTCCCAGTG...GGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCCATTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp GGCGAGGGCTGCTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGCAGTAGATCTGCAGGTCTaGTTTCTTGCTTCTTTTGAT +
Preference number: 4 (lower is better)
Translates to: GEGCCCCYRQKSAWVHRAVDLQV*FLASFD
Trigger: ATCAAAAGAAGCAAGAAACCAGACCTGCAGATCTAC...TGCCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp GTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAAAGAGCCAGGCTTTCCTaGGACAGAGTCATCAGCCAC +
Preference number: 4 (lower is better)
Translates to: VPVTGGRGKIQNEKSHKERARLS*DRVISH
Trigger: GTGGCTGATGACTCTGTCCCAGGAAAGCCTGGCTCT...TTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp TCTAATGGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCCTGCTTCTTCAGTCGTaGCCTCTCCTTGGCCCGATC +
Preference number: 4 (lower is better)
Translates to: SNGNFRISAPYHYRVAGSLLLQS*PLLGPI
Trigger: GATCGGGCCAAGGAGAGGCCACGACTGAAGAAGCAG...GGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCCATTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp AAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCAATGACCCTCACAGCCTTACCCCCACTGCTTaGGCCTTTGTCAGACTTCAT +
Preference number: 4 (lower is better)
Translates to: KGILPFPIPQPPANDPHSLTPTA*AFVRLH
Trigger: ATGAAGTCTGACAAAGGCCCAAGCAGTGGGGGTAAG...GCTGTGAGGGTCATTGGCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp GGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCTCGGGGATTTGTAGGGCCTACTaGGTACTGCAGAGGGCTATA +
Preference number: 4 (lower is better)
Translates to: GNFRISAPYHYRVAGSSGICRAY*VLQRAI
Trigger: TATAGCCCTCTGCAGTACCCAGTAGGCCCTACAAAT...CCCCGAGGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp GGAAGGCTTTATTTGGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAGGGGCGCCCATTCTTaGGAGCAATGTGCTGAGCCT +
Preference number: 4 (lower is better)
Translates to: GRLYLVPVTGGRGKIQNERGAHS*EQCAEP
Trigger: AGGCTCAGCACATTGCTCCCAAGAATGGGCGCCCCT...CTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp TGTGATCCCCTGCTTAGCCTGAGACAGCCTTCTCAATCCTCCTCTACCTCTTTGACCAGACTTTCACACTaGGGAGCAGCTCCTTCAGGT +
Preference number: 4 (lower is better)
Translates to: CDPLLSLRQPSQSSSTSLTRLSH*GAAPSG
Trigger: ACCTGAAGGAGCTGCTCCCCAGTGTGAAAGTCTGGT...CAAAGAGGTAGAGGAGGATTGAGAAGGCTGTCTCAGGCTAAGCAGGGGATCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp GCCCCATGTCCCCTCTTCTGGGTAAAGAAGTACAATGACAAAGCCAGAAACGGGGGTGAGGTCATCATCTaGGTCCTTGTACAGTGGCAC +
Preference number: 4 (lower is better)
Translates to: APCPLFWVKKYNDKARNGGEVII*VLVQWH
Trigger: GTGCCACTGTACAAGGACCCAGATGATGACCTCACC...CCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACATGGGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp GGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGGAAAACAAGGGCAAAGTGCAAGAAGCCGTTGGTATCTaGTACGAGGAACAAGGGTCT +
Preference number: 4 (lower is better)
Translates to: GPSLRPMTAQKENKGKVQEAVGI*YEEQGS
Trigger: AGACCCTTGTTCCTCGTACCAGATACCAACGGCTTC...TTGCACTTTGCCCTTGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp ACAGAGACTGTGCAGACTGAGGGGTTGATCAGTTTCCTTGCATCTAATGGAAACCTGTCTCCTGCCCTTTaGCGAGGCCGTCCAGCTCAT +
Preference number: 4 (lower is better)
Translates to: TETVQTEGLISFLASNGNLSPAL*RGRPAH
Trigger: ATGAGCTGGACGGCCTCGCCAAAGGGCAGGAGACAG...GTTTCCATTAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCACAGTCTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp ACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCGTTCGAGGAACTCAATaGATTTTCGGGCCTTTTCTT +
Preference number: 4 (lower is better)
Translates to: TAVKGRPRMGACAGGGPLVRGTQ*IFGPFL
Trigger: AAGAAAAGGCCCGAAAATCCATTGAGTTCCTCGAAC...GAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp TCTAATGGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCTGCTTGGGCCTGACGTaGATCACCCCAAGATGTAGG +
Preference number: 4 (lower is better)
Translates to: SNGNFRISAPYHYRVAGSCLGLT*ITPRCR
Trigger: CCTACATCTTGGGGTGATTCACGTCAGGCCCAAGCA...GGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCCATTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp GGCGAGGGCTGCTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGCAGTAACCTGTAGTTTCTaGAGCAAACTATCAAAGAAG +
Preference number: 4 (lower is better)
Translates to: GEGCCCCYRQKSAWVHRAVTCSF*SKLSKK
Trigger: CTTCTTTGATAGTTTGCTTCAGAAACTACAGGTTAC...TGCCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp ACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCCAAATCATACTTCGTTaGGCACTGATCAAGGCATAT +
Preference number: 4 (lower is better)
Translates to: TAVKGRPRMGACAGGGPLQIILR*ALIKAY
Trigger: ATATGCCTTGATCAGTGCTCAACGAAGTATGATTTG...GAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp TGTGATCCCCTGCTTAGCCTGAGACAGCCTTCTCAATCCTCCTCTACCTCTTTGTCAGGAGAGGACAGCTaGGCTTTAGCAGAGTCCTTA +
Preference number: 4 (lower is better)
Translates to: CDPLLSLRQPSQSSSTSLSGEDS*ALAESL
Trigger: TAAGGACTCTGCTAAAGCTCAGCTGTCCTCTCCTGA...CAAAGAGGTAGAGGAGGATTGAGAAGGCTGTCTCAGGCTAAGCAGGGGATCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp AAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCAATGACCCTCACAGCAATACTTCAGCACTGTaGCCCTTTTGCAGTCAGCTG +
Preference number: 4 (lower is better)
Translates to: KGILPFPIPQPPANDPHSNTSAL*PFCSQL
Trigger: CAGCTGACTGCAAAAGGGTCACAGTGCTGAAGTATT...GCTGTGAGGGTCATTGGCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp TCTAATGGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCTGGAGCTCCTGTTGCTaGATGTTCCGCACGTGCTGT +
Preference number: 4 (lower is better)
Translates to: SNGNFRISAPYHYRVAGSWSSCC*MFRTCC
Trigger: ACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCA...GGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCCATTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp CGCACGGGCCCAAGACCAGATGGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGATATCAAATTCCTCATaGTGCTTCTTTTCCATCTGT +
Preference number: 4 (lower is better)
Translates to: RTGPRPDGPSLRPMTAQKISNSS*CFFSIC
Trigger: ACAGATGGAAAAGAAGCAGCATGAGGAATTTGATAT...CTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCCATCTGGTCTTGGGCCCGTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp CCAGAGAGAAGCCGATCCTCTTCCAGGATAAGCAGGGTGAGGTCATCATCTGGGGTGTCATCCCCAACATaGCGGAAAGTAGACTTCTTT +
Preference number: 4 (lower is better)
Translates to: PERSRSSSRISRVRSSSGVSSPT*RKVDFF
Trigger: AAAGAAGTCTACTTTCCGGCATGTTGGGGATGACAC...CCCAGATGATGACCTCACCCTGCTTATCCTGGAAGAGGATCGGCTTCTCTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp GCCCCATGTCCCCTCTTCTGGGTAAAGAAGTACAATGACAAAGCCAGAAACGGGACAGATAGGGCAGTGTaGGCAGGCAGAATCAGGATA +
Preference number: 4 (lower is better)
Translates to: APCPLFWVKKYNDKARNGTDRAV*AGRIRI
Trigger: TATCCTGATTCTGCCTGCCCACACTGCCCTATCTGT...CCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACATGGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp TCTAATGGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCCCAGACTCAGTGCCCTaGGCAGACCGAGAATGTGAT +
Preference number: 4 (lower is better)
Translates to: SNGNFRISAPYHYRVAGSPDSVP*ADRECD
Trigger: ATCACATTCTCGGTCTGCCCAGGGCACTGAGTCTGG...GGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCCATTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp GTAAAGAAGTACAATGACAAAGCCAGAAACGGGCTCAACACCCTGGCACCTCTACCATTTCCTTTCCCATaGTGTCTGGGACGGGTGCCA +
Preference number: 4 (lower is better)
Translates to: VKKYNDKARNGLNTLAPLPFPFP*CLGRVP
Trigger: TGGCACCCGTCCCAGACACCATGGGAAAGGAAATGG...TAGAGGTGCCAGGGTGTTGAGCCCGTTTCTGGCTTTGTCATTGTACTTCTTTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp CCAGCTAGGAGACTTCTCAGAGGTGTGACGGGTTGGGAAGGAAGGACAGCTGGGGTAACCTGTAGTTTCTaGAGCAAACTATCAAAGAAG +
Preference number: 4 (lower is better)
Translates to: PARRLLRGVTGWEGRTAGVTCSF*SKLSKK
Trigger: CTTCTTTGATAGTTTGCTTCAGAAACTACAGGTTAC...CCCAGCTGTCCTTCCTTCCCAACCCGTCACACCTCTGAGAAGTCTCCTAGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp GACGGGTTGGGAAGGAAGGACAGCTGGGAAGGCTTTATTTGGTTCCTGTCACAGTTGATGGTCATAAGCTaGAGCATACGGGTACTTCCA +
Preference number: 4 (lower is better)
Translates to: DGLGRKDSWEGFIWFLSQLMVIS*SIRVLP
Trigger: TGGAAGTACCCGTATGCTGCAGCTTATGACCATCAA...CTGTGACAGGAACCAAATAAAGCCTTCCCAGCTGTCCTTCCTTCCCAACCCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp GGAAGGCTTTATTTGGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAGCCAAGCCCAAGGATaGAGCTTGTTCCTGGATCAC +
Preference number: 4 (lower is better)
Translates to: GRLYLVPVTGGRGKIQNESQAQG*SLFLDH
Trigger: GTGATCCAGGAACAAGCTGCATCCTTGGGCTTGGCT...CTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp CCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAACTGGTTCCGAATCTGCTCTaGGTTCTCACTGTTTGGATC +
Preference number: 4 (lower is better)
Translates to: PVTGGRGKIQNEKSHKELVPNLL*VLTVWI
Trigger: GATCCAAACAGTGAGAACCCAGAGCAGATTCGGAAC...CAGTTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp GTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAATTTTGTTCAGATCACTaGGACTCAGGCTGCCCAGAC +
Preference number: 4 (lower is better)
Translates to: VPVTGGRGKIQNEKSHKEFCSDH*DSGCPD
Trigger: GTCTGGGCAGCCTGAGTCCCAGTGATCTGAACAAAA...TTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
3UTR CAA 72 bp GACGAAGGAAGATACCTTGATGTCATCTTGGTCCTCTaGGTCCTCAGGAGAGGACAGCTGAGCTTTAGCAGA +
Preference number: 4 (lower is better)
Translates to: DEGRYLDVILVL*VLRRGQLSFSR
Trigger: TCTGCTAAAGCTCAGCTGTCCTCTCCTGAGGACCAAGAGGACCAAGATGACATCAAGGTATCTTCCTTCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp GCCAGGTGGTCAATGAAGCCGTTGGTATCTGGTACGAGGAACAAGGGTCTGATCTACTTCGTTGAGCACTaGTCAAGGCATATTTCACTG +
Preference number: 4 (lower is better)
Translates to: ARWSMKPLVSGTRNKGLIYFVEH*SRHISL
Trigger: CAGTGAAATATGCCTTGATCAGTGCTCAACGAAGTA...GATCAGACCCTTGTTCCTCGTACCAGATACCAACGGCTTCATTGACCACCTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp GGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGGAAAACAAGGGCAAAGTGCAACTTCAAATAAACTCATaGGACTCTCCTTGGCAGTCA +
Preference number: 4 (lower is better)
Translates to: GPSLRPMTAQKENKGKVQLQINS*DSPWQS
Trigger: TGACTGCCAAGGAGAGTCTCATGAGTTTATTTGAAG...TTGCACTTTGCCCTTGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp GTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAACATATTTTCCACCCTTaGATGCCAGCAGAGGCTCTT +
Preference number: 4 (lower is better)
Translates to: VPVTGGRGKIQNEKSHKEHIFHP*MPAEAL
Trigger: AAGAGCCTCTGCTGGCATTCAAGGGTGGAAAATATG...TTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp TCTAATGGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCAGCTGGTACTGCAAGTaGGGTAGCGATTCCTTCTCT +
Preference number: 4 (lower is better)
Translates to: SNGNFRISAPYHYRVAGSSWYCK*GSDSFS
Trigger: AGAGAAGGAATCGCTACCGCACTTGCAGTACCAGCT...GGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCCATTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp GCCCCATGTCCCCTCTTCTGGGTAAAGAAGTACAATGACAAAGCCAGAAACGGGGTGTCATCCCCAACATaGCGGAAAGTAGACTTCTTT +
Preference number: 4 (lower is better)
Translates to: APCPLFWVKKYNDKARNGVSSPT*RKVDFF
Trigger: AAAGAAGTCTACTTTCCGGCATGTTGGGGATGACAC...CCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACATGGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CCA 90 bp GTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAAAGGCATGTGCAGCGCTaGACCAGTAGAGAAAACATA +
Preference number: 4 (lower is better)
Translates to: VPVTGGRGKIQNEKSHKERHVQR*TSRENI
Trigger: TATGTTTTCTCTACTGGTCCAGCGCTGCACATGCCT...TTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp AAGTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCATATCCACATTATCTTTaGCTGACCTCACCACAGGGG +
Preference number: 4 (lower is better)
Translates to: KWDRKKKGILPFPIPQPPYPHYL*LTSPQG
Trigger: CCCCTGTGGTGAGGTCAGTCAAAGATAATGTGGATA...TGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR TCA 90 bp ACAGAGACTGTGCAGACTGAGGGGTTGATCAGTTTCCTTGCATCTAATGGAAACTTGGGAGCAATGTGCTaGGCCTTCAGATACCAACTG +
Preference number: 4 (lower is better)
Translates to: TETVQTEGLISFLASNGNLGAMC*AFRYQL
Trigger: CAGTTGGTATCTGAAGGCTCAGCACATTGCTCCCAA...GTTTCCATTAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCACAGTCTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp TCTAATGGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCCGAGAATGTGATGGATaGATCCAAATCTCCAGGCGA +
Preference number: 4 (lower is better)
Translates to: SNGNFRISAPYHYRVAGSRECDG*IQISRR
Trigger: TCGCCTGGAGATTTGGATTCATCCATCACATTCTCG...GGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCCATTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp TGTGATCCCCTGCTTAGCCTGAGACAGCCTTCTCAATCCTCCTCTACCTCTTTGTTTTTCGTAAAGGCTTaGTTCGAATGGCAAGCCCAT +
Preference number: 4 (lower is better)
Translates to: CDPLLSLRQPSQSSSTSLFFVKA*FEWQAH
Trigger: ATGGGCTTGCCATTCGAAGCAAGCCTTTACGAAAAA...CAAAGAGGTAGAGGAGGATTGAGAAGGCTGTCTCAGGCTAAGCAGGGGATCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp GGAAGGCTTTATTTGGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGGCTGTATCGTTGGCTTaGTCCCGATACCTAGAGATA +
Preference number: 4 (lower is better)
Translates to: GRLYLVPVTGGRGKIQNEAVSLA*SRYLEI
Trigger: TATCTCTAGGTATCGGGAGCAAGCCAACGATACAGC...CTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp GGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGGAAAACAAGGGCAAAGTGCAACTCAGACTGATTGACTaGAGTCAGTATGTTACAGAA +
Preference number: 4 (lower is better)
Translates to: GPSLRPMTAQKENKGKVQLRLID*SQYVTE
Trigger: TTCTGTAACATACTGACTGCAGTCAATCAGTCTGAG...TTGCACTTTGCCCTTGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR GCA 90 bp TCTAATGGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCTTTTCCACCCTTGAATaGCAGCAGAGGCTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: SNGNFRISAPYHYRVAGSFSTLE*QQRLFL
Trigger: CAAGAAGAGCCTCTGCTGGCATTCAAGGGTGGAAAA...GGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCCATTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp AAGTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCACGGGTAGTAAGCCCCTaGATACATACCATTTGTAGG +
Preference number: 4 (lower is better)
Translates to: KWDRKKKGILPFPIPQPPRVVSP*IHTICR
Trigger: CCTACAAATGGTATGTATCCAGGGGCTTACTACCCG...TGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp GGAAGGCTTTATTTGGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGGTTCCGAATCTGCTCTaGGTTCTCACTGTTTGGATC +
Preference number: 4 (lower is better)
Translates to: GRLYLVPVTGGRGKIQNEVPNLL*VLTVWI
Trigger: GATCCAAACAGTGAGAACCCAGAGCAGATTCGGAAC...CTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp CTTGTCTTTGCAGTAGTGCAGGCAGCAAGAGAGGATCAGGTCATCGTTGTTACCCTTCAAATAAACTCATaGGACTCTCCTTGGCAGTCA +
Preference number: 4 (lower is better)
Translates to: LVFAVVQAAREDQVIVVTLQINS*DSPWQS
Trigger: TGACTGCCAAGGAGAGTCTCATGAGTTTATTTGAAG...GGTAACAACGATGACCTGATCCTCTCTTGCTGCCTGCACTACTGCAAAGACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp AAGTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCACCTTTTGCAGTCAGCTaGAATAACCTTATCCGAGGT +
Preference number: 4 (lower is better)
Translates to: KWDRKKKGILPFPIPQPPPFAVS*NNLIRG
Trigger: ACCTCGGATAAGGTTATTGCAGCTGACTGCAAAAGG...TGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCACTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp ACAGAGACTGTGCAGACTGAGGGGTTGATCAGTTTCCTTGCATCTAATGGAAACGTAAACAGCTTCCCATaGGCATGGAGAAAACTGAGG +
Preference number: 4 (lower is better)
Translates to: TETVQTEGLISFLASNGNVNSFP*AWRKLR
Trigger: CCTCAGTTTTCTCCATGCCCATGGGAAGCTGTTTAC...GTTTCCATTAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCACAGTCTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
3UTR CAA 72 bp CAGTCTTTCAACTGGGAGTTATGCACGGCAAACATGTaGATGGTCATAAGCTGCAGCATACGGGTACTTCCA +
Preference number: 4 (lower is better)
Translates to: QSFNWELCTANM*MVISCSIRVLP
Trigger: TGGAAGTACCCGTATGCTGCAGCTTATGACCATCAACATGTTTGCCGTGCATAACTCCCAGTTGAAAGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp GTAAAGAAGTACAATGACAAAGCCAGAAACGGGCTCAACACCCTGGCACCTCTATACTTCGTTGAGCACTaGTCAAGGCATATTTCACTG +
Preference number: 4 (lower is better)
Translates to: VKKYNDKARNGLNTLAPLYFVEH*SRHISL
Trigger: CAGTGAAATATGCCTTGATCAGTGCTCAACGAAGTA...TAGAGGTGCCAGGGTGTTGAGCCCGTTTCTGGCTTTGTCATTGTACTTCTTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp AGGAAATTTCCCCAAGAGGGTACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCATTTACTCATGGTTTCTaGATCAAAAGTGACACGAAG +
Preference number: 4 (lower is better)
Translates to: RKFPQEGTAVKGRPRMGAFTHGF*IKSDTK
Trigger: CTTCGTGTCACTTTTGATGCAGAAACCATGAGTAAA...TGCTCCCATCCTTGGCCTTCCTTTCACTGCAGTACCCTCTTGGGGAAATTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CCA 90 bp ACAGAGACTGTGCAGACTGAGGGGTTGATCAGTTTCCTTGCATCTAATGGAAACTGCTGCAGCAATACTTaGAACTCCTTAAGGACCTTC +
Preference number: 4 (lower is better)
Translates to: TETVQTEGLISFLASNGNCCSNT*NSLRTF
Trigger: GAAGGTCCTTAAGGAGTTCCAAGTATTGCTGCAGCA...GTTTCCATTAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCACAGTCTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
3UTR CAA 72 bp AGGGCTTCCAGAAAATACTTCAGCACTGTGACCCTTTaGCAGTCAGCTGCAATAACCTTATCCGAGGTTTTC +
Preference number: 4 (lower is better)
Translates to: RASRKYFSTVTL*QSAAITLSEVF
Trigger: GAAAACCTCGGATAAGGTTATTGCAGCTGACTGCAAAAGGGTCACAGTGCTGAAGTATTTTCTGGAAGCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
3UTR CAA 72 bp ATATTTTCCACCCTTGAATGCCAGCAGAGGCTCTTCTaGTCCACAAAGGGCTTCCAGAAAATACTTCAGCAC +
Preference number: 4 (lower is better)
Translates to: IFSTLECQQRLF*STKGFQKILQH
Trigger: GTGCTGAAGTATTTTCTGGAAGCCCTTTGTGGACAAGAAGAGCCTCTGCTGGCATTCAAGGGTGGAAAATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp AAGTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCATGCTGGCTGCTAAACTaGGCATATAGTAATATACAG +
Preference number: 4 (lower is better)
Translates to: KWDRKKKGILPFPIPQPPCWLLN*AYSNIQ
Trigger: CTGTATATTACTATATGCGCAGTTTAGCAGCCAGCA...TGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp GACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCAATTGCTGGCTGCTAAACTaGGCATATAGTAATATACAG +
Preference number: 4 (lower is better)
Translates to: DRKKKGILPFPIPQPPANCWLLN*AYSNIQ
Trigger: CTGTATATTACTATATGCGCAGTTTAGCAGCCAGCA...ATTGGCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
3UTR CAA 72 bp CAGACATTCAGGACAGAGACTGTGCAGACTGAGGGGTaGATCAGTTTCCTTGCATCTAATGGAAACTTTAGA +
Preference number: 4 (lower is better)
Translates to: QTFRTETVQTEG*ISFLASNGNFR
Trigger: TCTAAAGTTTCCATTAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCACAGTCTCTGTCCTGAATGTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp GACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCAATTCAAATTCCTCATGCTaGTTCTTTTCCATCTGTTCA +
Preference number: 4 (lower is better)
Translates to: DRKKKGILPFPIPQPPANSNSSC*FFSICS
Trigger: TGAACAGATGGAAAAGAAGCAGCATGAGGAATTTGA...ATTGGCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR TCA 90 bp TTTCAACTGGGAGTTATGCACGGCAAACATGTTGATGGTCATAAGCTGCAGCATCAAATCATACTTCGTTaGGCACTGATCAAGGCATAT +
Preference number: 4 (lower is better)
Translates to: FQLGVMHGKHVDGHKLQHQIILR*ALIKAY
Trigger: ATATGCCTTGATCAGTGCTCAACGAAGTATGATTTG...ATGCTGCAGCTTATGACCATCAACATGTTTGCCGTGCATAACTCCCAGTTGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR GCA 90 bp GGAAGGCTTTATTTGGTTCCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGATATCAAATTCCTCATaGTGCTTCTTTTCCATCTGT +
Preference number: 4 (lower is better)
Translates to: GRLYLVPVTGGRGKIQNEISNSS*CFFSIC
Trigger: ACAGATGGAAAAGAAGCAGCATGAGGAATTTGATAT...CTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAATAAAGCCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp TGCAGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGAGTCGTGGCCTCTCCTaGGCCCGATCCTGGCGCCGC +
Preference number: 5 (lower is better)
Translates to: CSERKAKDGSMCWWRATQSRGLS*ARSWRR
Trigger: GCGGCGCCAGGATCGGGCCAAGGAGAGGCCACGACT...CTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp TGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGGGCCCGCAGTCAGGATAGGGTaGCTGGCTGCTAAACTGCGC +
Preference number: 5 (lower is better)
Translates to: CYTGRLAASQEWLHGGGPAVRIG*LAAKLR
Trigger: GCGCAGTTTAGCAGCCAGCAACCCTATCCTGACTGC...GGGCCCACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp CAGCGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACGCTCCCTCAGCACTGTaGTTGCTACCAGCTGAGCTG +
Preference number: 5 (lower is better)
Translates to: QRGSTGHLGLREMETPGHAPSAL*LLPAEL
Trigger: CAGCTCAGCTGGTAGCAACAACAGTGCTGAGGGAGC...GTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 90 bp AAAGATACCTGCTTCTTCAGTCGTGGCCTCTCCTTGGCCCGATCCTaGCGCCGCCGGCGACATCCATTATCGGTCAGGCCAGCTCCCTCA +
Preference number: 5 (lower is better)
Translates to: KDTCFFSRGLSLARS*RRRRHPLSVRPAPS
Trigger: TGAGGGAGCTGGCCTGACCGATAATGGATGTCGCCGGCGGCGCCAGGATCGGGCCAAGGAGAGGCCACGACTGAAGAAGCAGGTATCTTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp ATCTTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGCAGTCAGGATAGGGTaGCTGGCTGCTAAACTGCGC +
Preference number: 5 (lower is better)
Translates to: IFRVTLGAWRPLRNGSMGAVRIG*LAAKLR
Trigger: GCGCAGTTTAGCAGCCAGCAACCCTATCCTGACTGC...CCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CCA 90 bp TTAGTTCCTTCATGTTTTCTCTGCTCCCGGCCTGCGGAGCCAGAGTaGCCAGGATCCCTCGCAGTTCCGATGCGGAGATCCGCACACGCT +
Preference number: 5 (lower is better)
Translates to: LVPSCFLCSRPAEPE*PGSLAVPMRRSAHA
Trigger: AGCGTGTGCGGATCTCCGCATCGGAACTGCGAGGGATCCTGGCCACTCTGGCTCCGCAGGCCGGGAGCAGAGAAAACATGAAGGAACTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 90 bp CAGTTGAGGACAAAGATACCTGCTTCTTCAGTCGTGGCCTCTCCTTaGCCCGATCCTGGCGCCGCCGGCGACATCCATTATCGGTCAGGC +
Preference number: 5 (lower is better)
Translates to: QLRTKIPASSVVASP*PDPGAAGDIHYRSG
Trigger: GCCTGACCGATAATGGATGTCGCCGGCGGCGCCAGGATCGGGCCAAGGAGAGGCCACGACTGAAGAAGCAGGTATCTTTGTCCTCAACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 90 bp GTGCTGATGCGGTCCCTGGAAAGCAGGTTGCTGAGCTGCAGTTCCTaGTTGTCAGCCACTCGGAGAAGCCGATGGAGCTCCTGTTGCTGC +
Preference number: 5 (lower is better)
Translates to: VLMRSLESRLLSCSS*LSATRRSRWSSCCC
Trigger: GCAGCAACAGGAGCTCCATCGGCTTCTCCGAGTGGCTGACAACCAGGAACTGCAGCTCAGCAACCTGCTTTCCAGGGACCGCATCAGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp TCTTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTCATCATCTGGGTCCTaGTACAGTGGCACCTCAGAC +
Preference number: 5 (lower is better)
Translates to: SSVLHWAPGGLSGMAPWGSSSGS*YSGTSD
Trigger: GTCTGAGGTGCCACTGTACAAGGACCCAGATGATGA...CCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp CCAGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGTCCCAGCAGTTTCCGCCCTCAGCACTGTTGTaGCTACCAGCTGAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: PVTSLLNLGSPGGSQQFPPSALL*LPAELV
Trigger: TACCAGCTCAGCTGGTAGCAACAACAGTGCTGAGGG...CGGAAACTGCTGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp AGGGCGAGGGCTGCTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGCCTTACCCCCACTGCTaGGGCCTTTGTCAGACTTCA +
Preference number: 5 (lower is better)
Translates to: RARAAVAVTDRSQRGSTGPYPHC*GLCQTS
Trigger: TGAAGTCTGACAAAGGCCCAAGCAGTGGGGGTAAGG...CCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp AGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGTCCCAGCAGTTTCCGCCGGCTTCTGGTCAGGATaGTTTGGGTCCCATAGTCGG +
Preference number: 5 (lower is better)
Translates to: SHLPAKSWQPRRVPAVSAGFWSG*FGSHSR
Trigger: CCGACTATGGGACCCAAACAATCCTGACCAGAAGCC...GGCGGAAACTGCTGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp AGGGCGAGGGCTGCTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGGTCATCTTGGTCCTCTaGGTCCTCAGGAGAGGACAG +
Preference number: 5 (lower is better)
Translates to: RARAAVAVTDRSQRGSTGVILVL*VLRRGQ
Trigger: CTGTCCTCTCCTGAGGACCAAGAGGACCAAGATGAC...CCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp ATCTTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGCTCAGCTATCTTCCTaGCTAGAGCCAGCTTCTTGG +
Preference number: 5 (lower is better)
Translates to: IFRVTLGAWRPLRNGSMGAQLSS*LEPASW
Trigger: CCAAGAAGCTGGCTCTAGCAAGGAAGATAGCTGAGC...CCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp GGCGAGGGCTGCTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGCATTTTCGGGCCTTTTCTaGCACCACACGGGCATAGCC +
Preference number: 5 (lower is better)
Translates to: GEGCCCCYRQKSAWVHRAFSGLF*HHTGIA
Trigger: GGCTATGCCCGTGTGGTGCAAGAAAAGGCCCGAAAA...TGCCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp GTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACCCTTCCTGATAGATTCAAGTTCATaGCCACGGCTGGTCAAGGCC +
Preference number: 5 (lower is better)
Translates to: VHRASGPQGDGDTWAPFLIDSSS*PRLVKA
Trigger: GGCCTTGACCAGCCGTGGCAATGAACTTGAATCTAT...CAGGAAGGGTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp CAGGCACGTGGACATCTTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAAAGGGCCATTTTGCTGTaGGCTGTCCAATTCCTTGCA +
Preference number: 5 (lower is better)
Translates to: QARGHLPCYTGRLAASQERAILL*AVQFLA
Trigger: TGCAAGGAATTGGACAGCCAACAGCAAAATGGCCCT...TTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAAGATGTCCACGTGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp CAGCGTGGGTCCACAGGGCATCTGGGCCTCAGGGAGATGGAGACACCTGGGCACATCTATAGGGCCATTTaGCTGTTGGCTGTCCAATTC +
Preference number: 5 (lower is better)
Translates to: QRGSTGHLGLREMETPGHIYRAI*LLAVQF
Trigger: GAATTGGACAGCCAACAGCAAAATGGCCCTATAGAT...GTGCCCAGGTGTCTCCATCTCCCTGAGGCCCAGATGCCCTGTGGACCCACGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp AAGGCGATAGATTCAAGTTCATTGCCACGGCTGGTCAAGGCCCGCAGGCAGGAGAGCTGCAGTTCCTGGTaGTCAGCCACTCGGAGAAGC +
Preference number: 5 (lower is better)
Translates to: KAIDSSSLPRLVKARRQESCSSW*SATRRS
Trigger: GCTTCTCCGAGTGGCTGACAACCAGGAACTGCAGCT...CTCCTGCCTGCGGGCCTTGACCAGCCGTGGCAATGAACTTGAATCTATCGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS TCA 90 bp TCAGGATACCACGACCACGATCTCGAAGTTCTTGTCTCGGGTGTCTaGGCTCCTGCTTCTCAGAGCCCTTACCCCCACTGCTTGGGCCTT +
Preference number: 5 (lower is better)
Translates to: SGYHDHDLEVLVSGV*APASQSPYPHCLGL
Trigger: AAGGCCCAAGCAGTGGGGGTAAGGGCTCTGAGAAGCAGGAGCTCAGACACCCGAGACAAGAACTTCGAGATCGTGGTCGTGGTATCCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 90 bp GGCGACATCCATTATCGGTCAGGCCAGCTCCCTCAGCACTGTTGTTaGTACCAGCTGAGCTGGTACTGCAAGTGCGGTAGCGATTCCTTC +
Preference number: 5 (lower is better)
Translates to: GDIHYRSGQLPQHCC*YQLSWYCKCGSDSF
Trigger: GAAGGAATCGCTACCGCACTTGCAGTACCAGCTCAGCTGGTAGCAACAACAGTGCTGAGGGAGCTGGCCTGACCGATAATGGATGTCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 90 bp ACTCGGAGAAGCCGATGGAGCTCCTGTTGCTGCATGTTCCGCACGTaGTGTTCTATTTCCTCAGGACTCATGGTGCTAGCAGGGAGAGGG +
Preference number: 5 (lower is better)
Translates to: TRRSRWSSCCCMFRT*CSISSGLMVLAGRG
Trigger: CCCTCTCCCTGCTAGCACCATGAGTCCTGAGGAAATAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp GGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCTCGGGGTCTGGTCAGGATTGTTaGGGTCCCATAGTCGGCGGG +
Preference number: 5 (lower is better)
Translates to: GNFRISAPYHYRVAGSSGSGQDC*GPIVGG
Trigger: CCCGCCGACTATGGGACCCAAACAATCCTGACCAGA...CCCCGAGGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp CCAGCTAGGAGACTTCTCAGAGGTGTGACGGGTTGGGAAGGAAGGACAGCTGGGCTCATGAGACTCTCCTaGGCAGTCAGGATAGGGTTG +
Preference number: 5 (lower is better)
Translates to: PARRLLRGVTGWEGRTAGLMRLS*AVRIGL
Trigger: CAACCCTATCCTGACTGCCAAGGAGAGTCTCATGAG...CCCAGCTGTCCTTCCTTCCCAACCCGTCACACCTCTGAGAAGTCTCCTAGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS TCA 90 bp TCCTTCCCAGACTCAGTGCCCTGGGCAGACCGAGAATGTGATGGATaGATCCAAATCTCCAGGCGAGTAGTGTCATCCCCAACATGCCGG +
Preference number: 5 (lower is better)
Translates to: SFPDSVPWADRECDG*IQISRRVVSSPTCR
Trigger: CCGGCATGTTGGGGATGACACTACTCGCCTGGAGATTTGGATTCATCCATCACATTCTCGGTCTGCCCAGGGCACTGAGTCTGGGAAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 90 bp TCCTGGTTGTCAGCCACTCGGAGAAGCCGATGGAGCTCCTGTTGCTaGATGTTCCGCACGTGCTGTTCTATTTCCTCAGGACTCATGGTG +
Preference number: 5 (lower is better)
Translates to: SWLSATRRSRWSSCC*MFRTCCSISSGLMV
Trigger: CACCATGAGTCCTGAGGAAATAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGTGGCTGACAACCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CCA 90 bp GCCCGGGTAGTAAGCCCCTGGATACATACCATTTGTAGGGCCTACTaGGTACTGCAGAGGGCTATAGCCTGCATAGGGATACTGAGAGGC +
Preference number: 5 (lower is better)
Translates to: ARVVSPWIHTICRAY*VLQRAIACIGILRG
Trigger: GCCTCTCAGTATCCCTATGCAGGCTATAGCCCTCTGCAGTACCCAGTAGGCCCTACAAATGGTATGTATCCAGGGGCTTACTACCCGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 90 bp TTGCTGAGCTGCAGTTCCTGGTTGTCAGCCACTCGGAGAAGCCGATaGAGCTCCTGTTGCTGCATGTTCCGCACGTGCTGTTCTATTTCC +
Preference number: 5 (lower is better)
Translates to: LLSCSSWLSATRRSR*SSCCCMFRTCCSIS
Trigger: GGAAATAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGTGGCTGACAACCAGGAACTGCAGCTCAGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp AGGGCGAGGGCTGCTGTTGCTGTTACAGACAGAAGTCAGCGTGGGTCCACAGGGGTTTTTCGTAAAGGCTaGCTTCGAATGGCAAGCCCA +
Preference number: 5 (lower is better)
Translates to: RARAAVAVTDRSQRGSTGVFRKG*LRMASP
Trigger: TGGGCTTGCCATTCGAAGCAAGCCTTTACGAAAAAC...CCCTGTGGACCCACGCTGACTTCTGTCTGTAACAGCAACAGCAGCCCTCGCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp TTCCGTGTTACACTGGGCGCCTGGCGGCCTCTCAGGAATGGCTCCATGGGGGTGGCAAATCATACTTCGTaGAGCACTGATCAAGGCATA +
Preference number: 5 (lower is better)
Translates to: FRVTLGAWRPLRNGSMGVANHTS*STDQGI
Trigger: TATGCCTTGATCAGTGCTCAACGAAGTATGATTTGC...CACCCCCATGGAGCCATTCCTGAGAGGCCGCCAGGCGCCCAGTGTAACACGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp CCAGCTAGGAGACTTCTCAGAGGTGTGACGGGTTGGGAAGGAAGGACAGCTGGGTGCACGGCAAACATGTaGATGGTCATAAGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: PARRLLRGVTGWEGRTAGCTANM*MVISCS
Trigger: GCTGCAGCTTATGACCATCAACATGTTTGCCGTGCA...CCCAGCTGTCCTTCCTTCCCAACCCGTCACACCTCTGAGAAGTCTCCTAGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp AGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGGACTGGTCAATGAAGCCGTaGGTATCTGGTACGAGGAAC +
Preference number: 5 (lower is better)
Translates to: SERKAKDGSMCWWRATQDWSMKP*VSGTRN
Trigger: GTTCCTCGTACCAGATACCAACGGCTTCATTGACCA...GTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 90 bp GGCCAGCTCCCTCAGCACTGTTGTTGCTACCAGCTGAGCTGGTACTaGAAGTGCGGTAGCGATTCCTTCTCTTGTCTGATCTCGAGTATC +
Preference number: 5 (lower is better)
Translates to: GQLPQHCCCYQLSWY*KCGSDSFSCLISSI
Trigger: GATACTCGAGATCAGACAAGAGAAGGAATCGCTACCGCACTTGCAGTACCAGCTCAGCTGGTAGCAACAACAGTGCTGAGGGAGCTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 90 bp CATACCATTTGTAGGGCCTACTGGGTACTGCAGAGGGCTATAGCCTaGATAGGGATACTGAGAGGCAGGGCCTGGTGTCCGAGGGTAATA +
Preference number: 5 (lower is better)
Translates to: HTICRAYWVLQRAIA*IGILRGRAWCPRVI
Trigger: TATTACCCTCGGACACCAGGCCCTGCCTCTCAGTATCCCTATGCAGGCTATAGCCCTCTGCAGTACCCAGTAGGCCCTACAAATGGTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 90 bp AGTTCCTGGTTGTCAGCCACTCGGAGAAGCCGATGGAGCTCCTGTTaGTGCATGTTCCGCACGTGCTGTTCTATTTCCTCAGGACTCATG +
Preference number: 5 (lower is better)
Translates to: SSWLSATRRSRWSSC*CMFRTCCSISSGLM
Trigger: CATGAGTCCTGAGGAAATAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGTGGCTGACAACCAGGAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp AGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGGACTCACTGTTTGGATCCTaGAGAAGCTGCCTGAACTTC +
Preference number: 5 (lower is better)
Translates to: SERKAKDGSMCWWRATQDSLFGS*RSCLNF
Trigger: GAAGTTCAGGCAGCTTCTCAAGGATCCAAACAGTGA...GTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp AGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGTCCCAGCAGTTTCCGCCATGCTGCAGCAATACTaGGAACTCCTTAAGGACCTT +
Preference number: 5 (lower is better)
Translates to: SHLPAKSWQPRRVPAVSAMLQQY*ELLKDL
Trigger: AAGGTCCTTAAGGAGTTCCAAGTATTGCTGCAGCAT...GGCGGAAACTGCTGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp AGTCACCTCCCTGCTAAATCTTGGCAGCCCAGGAGGGTCCCAGCAGTTTCCGCCAGAAATCAGCTAGTGTaGACCAGACATCCACAGCAA +
Preference number: 5 (lower is better)
Translates to: SHLPAKSWQPRRVPAVSARNQLV*TRHPQQ
Trigger: TTGCTGTGGATGTCTGGTCAACACTAGCTGATTTCT...GGCGGAAACTGCTGGGACCCTCCTGGGCTGCCAAGATTTAGCAGGGAGGTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp GGCCCTTCCCTTAGGCCCATGACTGCCCAAAAGGAAAACAAGGGCAAAGTGCAACAGCAGAGGCTCTTCTaGTCCACAAAGGGCTTCCAG +
Preference number: 5 (lower is better)
Translates to: GPSLRPMTAQKENKGKVQQQRLF*STKGFQ
Trigger: CTGGAAGCCCTTTGTGGACAAGAAGAGCCTCTGCTG...TTGCACTTTGCCCTTGTTTTCCTTTTGGGCAGTCATGGGCCTAAGGGAAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp TCTAATGGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCTCTGTCTCCTGCCCTTaGGCGAGGCCGTCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: SNGNFRISAPYHYRVAGSSVSCP*ARPSSS
Trigger: TGAGCTGGACGGCCTCGCCAAAGGGCAGGAGACAGA...GGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCCATTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS TCA 90 bp CTCAGAATCCTTCCCAGACTCAGTGCCCTGGGCAGACCGAGAATGTaGTGGATGAATCCAAATCTCCAGGCGAGTAGTGTCATCCCCAAC +
Preference number: 5 (lower is better)
Translates to: LRILPRLSALGRPRM*WMNPNLQASSVIPN
Trigger: GTTGGGGATGACACTACTCGCCTGGAGATTTGGATTCATCCATCACATTCTCGGTCTGCCCAGGGCACTGAGTCTGGGAAGGATTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CCA 90 bp GGTGTAGACTCCGGAGAACCTGATGAACTGACAGATAGGGCAGTGTaGGCAGGCAGAATCAGGATACCACGACCACGATCTCGAAGTTCT +
Preference number: 5 (lower is better)
Translates to: GVDSGEPDELTDRAV*AGRIRIPRPRSRSS
Trigger: AGAACTTCGAGATCGTGGTCGTGGTATCCTGATTCTGCCTGCCCACACTGCCCTATCTGTCAGTTCATCAGGTTCTCCGGAGTCTACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 90 bp TATACACTGCCAGTAGAGCCAACTGGTTATAGGGGCGCCCATTCTTaGGAGCAATGTGCTGAGCCTTCAGATACCAACTGCGAGCCTTCC +
Preference number: 5 (lower is better)
Translates to: YTLPVEPTGYRGAHS*EQCAEPSDTNCEPS
Trigger: GGAAGGCTCGCAGTTGGTATCTGAAGGCTCAGCACATTGCTCCCAAGAATGGGCGCCCCTATAACCAGTTGGCTCTACTGGCAGTGTATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp AGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGGACCTAGTCCAACAGTCTTaGGAAAAGTTTCCTGTGCCT +
Preference number: 5 (lower is better)
Translates to: SERKAKDGSMCWWRATQDLVQQS*EKFPVP
Trigger: AGGCACAGGAAACTTTTCCAAAGACTGTTGGACTAG...GTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp GACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCAATAGGCCGTCCAGCTCATaGATCACGATGAGGGGCACC +
Preference number: 5 (lower is better)
Translates to: DRKKKGILPFPIPQPPANRPSSS*ITMRGT
Trigger: GGTGCCCCTCATCGTGATCAATGAGCTGGACGGCCT...ATTGGCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp CCCTGGCACCTCTACCTTGGGGTTCAGCTCTCCCAGCTAGGAGACTTCTCAGAGCGGTTTTCTTTACCATaGCTTTTCTGTTCACCCTCA +
Preference number: 5 (lower is better)
Translates to: PWHLYLGVQLSQLGDFSERFSLP*LFCSPS
Trigger: TGAGGGTGAACAGAAAAGCAATGGTAAAGAAAACCG...CTCTGAGAAGTCTCCTAGCTGGGAGAGCTGAACCCCAAGGTAGAGGTGCCAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp AGTGAAAGGAAGGCCAAGGATGGGAGCATGTGCTGGTGGAGGGCCACTCAGGACGCAAATCATACTTCGTaGAGCACTGATCAAGGCATA +
Preference number: 5 (lower is better)
Translates to: SERKAKDGSMCWWRATQDANHTS*STDQGI
Trigger: TATGCCTTGATCAGTGCTCAACGAAGTATGATTTGC...GTCCTGAGTGGCCCTCCACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp TCTAATGGAAACTTTAGAATCTCTGCCCCTTACCACTACAGAGTGGCTGGGTCCGCTAGAGCCAGCTTCTaGGCCCGAAGTTCCCTGATG +
Preference number: 5 (lower is better)
Translates to: SNGNFRISAPYHYRVAGSARASF*ARSSLM
Trigger: CATCAGGGAACTTCGGGCCAAGAAGCTGGCTCTAGC...GGACCCAGCCACTCTGTAGTGGTAAGGGGCAGAGATTCTAAAGTTTCCATTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp CCCTGGCACCTCTACCTTGGGGTTCAGCTCTCCCAGCTAGGAGACTTCTCAGAGTGCAGGTCTGGTTTCTaGCTTCTTTTGATGATCTTT +
Preference number: 5 (lower is better)
Translates to: PWHLYLGVQLSQLGDFSECRSGF*LLLMIF
Trigger: AAAGATCATCAAAAGAAGCAAGAAACCAGACCTGCA...CTCTGAGAAGTCTCCTAGCTGGGAGAGCTGAACCCCAAGGTAGAGGTGCCAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp ACAGAGACTGTGCAGACTGAGGGGTTGATCAGTTTCCTTGCATCTAATGGAAACAGCTGCAGTTCCTGGTaGTCAGCCACTCGGAGAAGC +
Preference number: 5 (lower is better)
Translates to: TETVQTEGLISFLASNGNSCSSW*SATRRS
Trigger: GCTTCTCCGAGTGGCTGACAACCAGGAACTGCAGCT...GTTTCCATTAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCACAGTCTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp CTTGTCTTTGCAGTAGTGCAGGCAGCAAGAGAGGATCAGGTCATCGTTGTTACCCTCATGAGACTCTCCTaGGCAGTCAGGATAGGGTTG +
Preference number: 5 (lower is better)
Translates to: LVFAVVQAAREDQVIVVTLMRLS*AVRIGL
Trigger: CAACCCTATCCTGACTGCCAAGGAGAGTCTCATGAG...GGTAACAACGATGACCTGATCCTCTCTTGCTGCCTGCACTACTGCAAAGACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp AAGTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCCCAAGGATGCAGCTaGTTCCTGGATCACAGAACG +
Preference number: 5 (lower is better)
Translates to: KWDRKKKGILPFPIPQPPAQGCS*FLDHRT
Trigger: CGTTCTGTGATCCAGGAACAAGCTGCATCCTTGGGC...TGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 90 bp CTCCCTCAGCACTGTTGTTGCTACCAGCTGAGCTGGTACTGCAAGTaGGGTAGCGATTCCTTCTCTTGTCTGATCTCGAGTATCTCTTTA +
Preference number: 5 (lower is better)
Translates to: LPQHCCCYQLSWYCK*GSDSFSCLISSISL
Trigger: TAAAGAGATACTCGAGATCAGACAAGAGAAGGAATCGCTACCGCACTTGCAGTACCAGCTCAGCTGGTAGCAACAACAGTGCTGAGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 90 bp AAGTCACTGCCCTCATCTAAGAGCTCCAAGAGTCTGTTCCGAATCTaGTCTGGGTTCTCACTGTTTGGATCCTTGAGAAGCTGCCTGAAC +
Preference number: 5 (lower is better)
Translates to: KSLPSSKSSKSLFRI*SGFSLFGSLRSCLN
Trigger: GTTCAGGCAGCTTCTCAAGGATCCAAACAGTGAGAACCCAGAGCAGATTCGGAACAGACTCTTGGAGCTCTTAGATGAGGGCAGTGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CCA 90 bp GGGAATGTCTCCATCCCAATCCGGGTAAACAGCTTCCCATGGGCATaGAGAAAACTGAGGATGAACCTTTTGTTCAGATCACTGGGACTC +
Preference number: 5 (lower is better)
Translates to: GNVSIPIRVNSFPWA*RKLRMNLLFRSLGL
Trigger: GAGTCCCAGTGATCTGAACAAAAGGTTCATCCTCAGTTTTCTCCATGCCCATGGGAAGCTGTTTACCCGGATTGGGATGGAGACATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 90 bp ATACGGGTACTTCCAATAGGAGATGGGCTATGCTGCAGCAATACTTaGAACTCCTTAAGGACCTTCTCAGCCACTGCAGGGAATGTCTCC +
Preference number: 5 (lower is better)
Translates to: IRVLPIGDGLCCSNT*NSLRTFSATAGNVS
Trigger: GGAGACATTCCCTGCAGTGGCTGAGAAGGTCCTTAAGGAGTTCCAAGTATTGCTGCAGCATAGCCCATCTCCTATTGGAAGTACCCGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp CCTGTCACAGGTGGTAGGGGTAAGATTCAGAACGAGAAGTCCCACAAGGAACTGTTTCCCTTTTCTCCCTaGGCAGTTCTTACACGGTCA +
Preference number: 5 (lower is better)
Translates to: PVTGGRGKIQNEKSHKELFPFSP*AVLTRS
Trigger: TGACCGTGTAAGAACTGCCAAGGGAGAAAAGGGAAA...CAGTTCCTTGTGGGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp AGGAAATTTCCCCAAGAGGGTACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCATCACTGTTTGGATCCTaGAGAAGCTGCCTGAACTTC +
Preference number: 5 (lower is better)
Translates to: RKFPQEGTAVKGRPRMGASLFGS*RSCLNF
Trigger: GAAGTTCAGGCAGCTTCTCAAGGATCCAAACAGTGA...TGCTCCCATCCTTGGCCTTCCTTTCACTGCAGTACCCTCTTGGGGAAATTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS-3UTR CAA 90 bp GTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCAGCGTTTTTCGTAAAGGCTaGCTTCGAATGGCAAGCCCA +
Preference number: 5 (lower is better)
Translates to: VGQKEERYSSIPNPPTPSVFRKG*LRMASP
Trigger: TGGGCTTGCCATTCGAAGCAAGCCTTTACGAAAAAC...GCTGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 90 bp AATGTGCTGAGCCTTCAGATACCAACTGCGAGCCTTCCCATAGTTTaGTGTATCGTTGGCTTGCTCCCGATACCTAGAGATATCTCCTTG +
Preference number: 5 (lower is better)
Translates to: NVLSLQIPTASLPIV*CIVGLLPIPRDISL
Trigger: CAAGGAGATATCTCTAGGTATCGGGAGCAAGCCAACGATACAGCAAACTATGGGAAGGCTCGCAGTTGGTATCTGAAGGCTCAGCACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 90 bp ATAAGCTGCAGCATACGGGTACTTCCAATAGGAGATGGGCTATGCTaGAGCAATACTTGGAACTCCTTAAGGACCTTCTCAGCCACTGCA +
Preference number: 5 (lower is better)
Translates to: ISCSIRVLPIGDGLC*SNTWNSLRTFSATA
Trigger: TGCAGTGGCTGAGAAGGTCCTTAAGGAGTTCCAAGTATTGCTGCAGCATAGCCCATCTCCTATTGGAAGTACCCGTATGCTGCAGCTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 90 bp GTCATAAGCTGCAGCATACGGGTACTTCCAATAGGAGATGGGCTATaGTGCAGCAATACTTGGAACTCCTTAAGGACCTTCTCAGCCACT +
Preference number: 5 (lower is better)
Translates to: VISCSIRVLPIGDGL*CSNTWNSLRTFSAT
Trigger: AGTGGCTGAGAAGGTCCTTAAGGAGTTCCAAGTATTGCTGCAGCATAGCCCATCTCCTATTGGAAGTACCCGTATGCTGCAGCTTATGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 90 bp ACTGCAGGGAATGTCTCCATCCCAATCCGGGTAAACAGCTTCCCATaGGCATGGAGAAAACTGAGGATGAACCTTTTGTTCAGATCACTG +
Preference number: 5 (lower is better)
Translates to: TAGNVSIPIRVNSFP*AWRKLRMNLLFRSL
Trigger: CAGTGATCTGAACAAAAGGTTCATCCTCAGTTTTCTCCATGCCCATGGGAAGCTGTTTACCCGGATTGGGATGGAGACATTCCCTGCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 90 bp GAGCTCCAAGAGTCTGTTCCGAATCTGCTCTGGGTTCTCACTGTTTaGATCCTTGAGAAGCTGCCTGAACTTCTCAATCACCTGATAGAA +
Preference number: 5 (lower is better)
Translates to: ELQESVPNLLWVLTV*ILEKLPELLNHLIE
Trigger: TTCTATCAGGTGATTGAGAAGTTCAGGCAGCTTCTCAAGGATCCAAACAGTGAGAACCCAGAGCAGATTCGGAACAGACTCTTGGAGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CCA 90 bp GTTGATGGTCATAAGCTGCAGCATACGGGTACTTCCAATAGGAGATaGGCTATGCTGCAGCAATACTTGGAACTCCTTAAGGACCTTCTC +
Preference number: 5 (lower is better)
Translates to: VDGHKLQHTGTSNRR*AMLQQYLELLKDLL
Trigger: GAGAAGGTCCTTAAGGAGTTCCAAGTATTGCTGCAGCATAGCCCATCTCCTATTGGAAGTACCCGTATGCTGCAGCTTATGACCATCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 90 bp ACCAGTAGAGAAAACATAGCCAAGCCCAAGGATGCAGCTTGTTCCTaGATCACAGAACGACACTCCTCTGAGAAGCAGTCTTTTAGCTTC +
Preference number: 5 (lower is better)
Translates to: TSRENIAKPKDAACS*ITERHSSEKQSFSF
Trigger: GAAGCTAAAAGACTGCTTCTCAGAGGAGTGTCGTTCTGTGATCCAGGAACAAGCTGCATCCTTGGGCTTGGCTATGTTTTCTCTACTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140197.3
CDS-3UTR CAA 90 bp GCCCCATGTCCCCTCTTCTGGGTAAAGAAGTACAATGACAAAGCCAGAAACGGGCATCTAAGGAATCAGTaGAGGACAAAGATACCTGCT +
Preference number: 5 (lower is better)
Translates to: APCPLFWVKKYNDKARNGHLRNQ*RTKIPA
Trigger: AGCAGGTATCTTTGTCCTCAACTGATTCCTTAGATG...CCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACATGGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp AAGTGGGACAGAAAGAAGAAAGGTATTCTTCCATTCCCAATCCCCCAACCCCCACTGAGGATGAACCTTTaGTTCAGATCACTGGGACTC +
Preference number: 5 (lower is better)
Translates to: KWDRKKKGILPFPIPQPPLRMNL*FRSLGL
Trigger: GAGTCCCAGTGATCTGAACAAAAGGTTCATCCTCAG...TGGGGGTTGGGGGATTGGGAATGGAAGAATACCTTTCTTCTTTCTGTCCCACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp ACAGAGACTGTGCAGACTGAGGGGTTGATCAGTTTCCTTGCATCTAATGGAAACAGCACTGTGACCCTTTaGCAGTCAGCTGCAATAACC +
Preference number: 5 (lower is better)
Translates to: TETVQTEGLISFLASNGNSTVTL*QSAAIT
Trigger: GGTTATTGCAGCTGACTGCAAAAGGGTCACAGTGCT...GTTTCCATTAGATGCAAGGAAACTGATCAACCCCTCAGTCTGCACAGTCTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp GTAAAGAAGTACAATGACAAAGCCAGAAACGGGCTCAACACCCTGGCACCTCTAACATATTTTCCACCCTaGAATGCCAGCAGAGGCTCT +
Preference number: 5 (lower is better)
Translates to: VKKYNDKARNGLNTLAPLTYFPP*NASRGS
Trigger: AGAGCCTCTGCTGGCATTCAAGGGTGGAAAATATGT...TAGAGGTGCCAGGGTGTTGAGCCCGTTTCTGGCTTTGTCATTGTACTTCTTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS-3UTR CAA 90 bp AGGAAATTTCCCCAAGAGGGTACTGCAGTGAAAGGAAGGCCAAGGATGGGAGCAGGTTTCTTGCTTCTTTaGATGATCTTTAGACTTCGG +
Preference number: 5 (lower is better)
Translates to: RKFPQEGTAVKGRPRMGAGFLLL*MIFRLR
Trigger: CCGAAGTCTAAAGATCATCAAAAGAAGCAAGAAACC...TGCTCCCATCCTTGGCCTTCCTTTCACTGCAGTACCCTCTTGGGGAAATTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS TCA 90 bp CACTGCTTGGGCCTTTGTCAGACTTCATTCTATCCACATTATCTTTaGCTGACCTCACCACAGGGGAGTCTTTACTCATGGTTTCTGCAT +
Preference number: 5 (lower is better)
Translates to: HCLGLCQTSFYPHYL*LTSPQGSLYSWFLH
Trigger: ATGCAGAAACCATGAGTAAAGACTCCCCTGTGGTGAGGTCAGTCAAAGATAATGTGGATAGAATGAAGTCTGACAAAGGCCCAAGCAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS TCA 90 bp GCTTGGGCCTTTGTCAGACTTCATTCTATCCACATTATCTTTGACTaGCCTCACCACAGGGGAGTCTTTACTCATGGTTTCTGCATCAAA +
Preference number: 5 (lower is better)
Translates to: AWAFVRLHSIHIIFD*PHHRGVFTHGFCIK
Trigger: TTTGATGCAGAAACCATGAGTAAAGACTCCCCTGTGGTGAGGTCAGTCAAAGATAATGTGGATAGAATGAAGTCTGACAAAGGCCCAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS TCA 90 bp CAAGATGTAGGGCTAATTTCATCATCAGTGTCCAAGAAATGTAGCTaGGGTGTCTGGCTTTTTAGGGCAGGCTTCTGGTCAGGATTGTTT +
Preference number: 5 (lower is better)
Translates to: QDVGLISSSVSKKCS*GVWLFRAGFWSGLF
Trigger: AAACAATCCTGACCAGAAGCCTGCCCTAAAAAGCCAGACACCTCAGCTACATTTCTTGGACACTGATGATGAAATTAGCCCTACATCTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 90 bp AAAGTCCAGGCTTATAGATTTCCAAATCTGGACGCCTATTATCTTTaGGCTGTCTGGGTTCCTTTAGTTCCTTCATGTTTTCTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: KVQAYRFPNLDAYYL*AVWVPLVPSCFLCS
Trigger: GGAGCAGAGAAAACATGAAGGAACTAAAGGAACCCAGACAGCGCAAAGATAATAGGCGTCCAGATTTGGAAATCTATAAGCCTGGACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS TCA 90 bp TCTATAGGGCCATTTTGCTGTTGGCTGTCCAATTCCTTGCAAACTTaGATAAGCTGTGTATCATTCCCAACAGCAGAAGAATCTCTGTCA +
Preference number: 5 (lower is better)
Translates to: SIGPFCCWLSNSLQT*ISCVSFPTAEESLS
Trigger: TGACAGAGATTCTTCTGCTGTTGGGAATGATACACAGCTTATTCAAGTTTGCAAGGAATTGGACAGCCAACAGCAAAATGGCCCTATAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS TCA 90 bp TGCTCCCGATACCTAGAGATATCTCCTTGGCAAATCATACTTCGTTaGGCACTGATCAAGGCATATTTCACTGTTTTTCGTAAAGGCTTG +
Preference number: 5 (lower is better)
Translates to: CSRYLEISPWQIILR*ALIKAYFTVFRKGL
Trigger: CAAGCCTTTACGAAAAACAGTGAAATATGCCTTGATCAGTGCTCAACGAAGTATGATTTGCCAAGGAGATATCTCTAGGTATCGGGAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 90 bp TTCTTTCCTTTTCGCCACTTATCAGGGCTCATATCAAATTCCTCATaGTGCTTCTTTTCCATCTGTTCAGCCTTTCGTTTAGTCTCTTCA +
Preference number: 5 (lower is better)
Translates to: FFPFRHLSGLISNSS*CFFSICSAFRLVSS
Trigger: TGAAGAGACTAAACGAAAGGCTGAACAGATGGAAAAGAAGCAGCATGAGGAATTTGATATGAGCCCTGATAAGTGGCGAAAAGGAAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 90 bp TTTCCTTTTCGCCACTTATCAGGGCTCATATCAAATTCCTCATGCTaGTTCTTTTCCATCTGTTCAGCCTTTCGTTTAGTCTCTTCAAAT +
Preference number: 5 (lower is better)
Translates to: FPFRHLSGLISNSSC*FFSICSAFRLVSSN
Trigger: ATTTGAAGAGACTAAACGAAAGGCTGAACAGATGGAAAAGAAGCAGCATGAGGAATTTGATATGAGCCCTGATAAGTGGCGAAAAGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 72 bp CGGAGCCAGAGTGGCCAGGATCCCTCGCAGTTCCGATaGGGAGATCCGCACACGCTCCAACCCCTCCGCCAT +
Preference number: 6 (lower is better)
Translates to: RSQSGQDPSQFR*GDPHTLQPLRH
Trigger: ATGGCGGAGGGGTTGGAGCGTGTGCGGATCTCCGCATCGGAACTGCGAGGGATCCTGGCCACTCTGGCTCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 72 bp TGCTTCTTCAGTCGTGGCCTCTCCTTGGCCCGATCCTaGCGCCGCCGGCGACATCCATTATCGGTCAGGCCA +
Preference number: 6 (lower is better)
Translates to: CFFSRGLSLARS*RRRRHPLSVRP
Trigger: TGGCCTGACCGATAATGGATGTCGCCGGCGGCGCCAGGATCGGGCCAAGGAGAGGCCACGACTGAAGAAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 72 bp TCATGTTTTCTCTGCTCCCGGCCTGCGGAGCCAGAGTaGCCAGGATCCCTCGCAGTTCCGATGCGGAGATCC +
Preference number: 6 (lower is better)
Translates to: SCFLCSRPAEPE*PGSLAVPMRRS
Trigger: GGATCTCCGCATCGGAACTGCGAGGGATCCTGGCCACTCTGGCTCCGCAGGCCGGGAGCAGAGAAAACATGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 72 bp CGGTCCCTGGAAAGCAGGTTGCTGAGCTGCAGTTCCTaGTTGTCAGCCACTCGGAGAAGCCGATGGAGCTCC +
Preference number: 6 (lower is better)
Translates to: RSLESRLLSCSS*LSATRRSRWSS
Trigger: GGAGCTCCATCGGCTTCTCCGAGTGGCTGACAACCAGGAACTGCAGCTCAGCAACCTGCTTTCCAGGGACCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 72 bp TGTAGGGCCTACTGGGTACTGCAGAGGGCTATAGCCTaGATAGGGATACTGAGAGGCAGGGCCTGGTGTCCG +
Preference number: 6 (lower is better)
Translates to: CRAYWVLQRAIA*IGILRGRAWCP
Trigger: CGGACACCAGGCCCTGCCTCTCAGTATCCCTATGCAGGCTATAGCCCTCTGCAGTACCCAGTAGGCCCTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 72 bp GACAAAGATACCTGCTTCTTCAGTCGTGGCCTCTCCTaGGCCCGATCCTGGCGCCGCCGGCGACATCCATTA +
Preference number: 6 (lower is better)
Translates to: DKDTCFFSRGLS*ARSWRRRRHPL
Trigger: TAATGGATGTCGCCGGCGGCGCCAGGATCGGGCCAAGGAGAGGCCACGACTGAAGAAGCAGGTATCTTTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 90 bp TCAGTTGAGGACAAAGATACCTGCTTCTTCAGTCGTGGCCTCTCCTaGGCCCGATCCTGGCGCCGCCGGCGACATCCATTATCGGTCAGG +
Preference number: 6 (lower is better)
Translates to: SVEDKDTCFFSRGLS*ARSWRRRRHPLSVR
Trigger: CCTGACCGATAATGGATGTCGCCGGCGGCGCCAGGATCGGGCCAAGGAGAGGCCACGACTGAAGAAGCAGGTATCTTTGTCCTCAACTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 90 bp CTGATGCGGTCCCTGGAAAGCAGGTTGCTGAGCTGCAGTTCCTGGTaGTCAGCCACTCGGAGAAGCCGATGGAGCTCCTGTTGCTGCATG +
Preference number: 6 (lower is better)
Translates to: LMRSLESRLLSCSSW*SATRRSRWSSCCCM
Trigger: CATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGTGGCTGACAACCAGGAACTGCAGCTCAGCAACCTGCTTTCCAGGGACCGCATCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CAA 90 bp GTGGGCAGGCAGAATCAGGATACCACGACCACGATCTCGAAGTTCTaGTCTCGGGTGTCTGAGCTCCTGCTTCTCAGAGCCCTTACCCCC +
Preference number: 6 (lower is better)
Translates to: VGRQNQDTTTTISKF*SRVSELLLLRALTP
Trigger: GGGGGTAAGGGCTCTGAGAAGCAGGAGCTCAGACACCCGAGACAAGAACTTCGAGATCGTGGTCGTGGTATCCTGATTCTGCCTGCCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 72 bp ACAAAGATACCTGCTTCTTCAGTCGTGGCCTCTCCTTaGCCCGATCCTGGCGCCGCCGGCGACATCCATTAT +
Preference number: 6 (lower is better)
Translates to: TKIPASSVVASP*PDPGAAGDIHY
Trigger: ATAATGGATGTCGCCGGCGGCGCCAGGATCGGGCCAAGGAGAGGCCACGACTGAAGAAGCAGGTATCTTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 72 bp TGCAGTTCCTGGTTGTCAGCCACTCGGAGAAGCCGATaGAGCTCCTGTTGCTGCATGTTCCGCACGTGCTGT +
Preference number: 6 (lower is better)
Translates to: CSSWLSATRRSR*SSCCCMFRTCC
Trigger: ACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGTGGCTGACAACCAGGAACTGCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 72 bp CATTATCGGTCAGGCCAGCTCCCTCAGCACTGTTGTTaGTACCAGCTGAGCTGGTACTGCAAGTGCGGTAGC +
Preference number: 6 (lower is better)
Translates to: HYRSGQLPQHCC*YQLSWYCKCGS
Trigger: GCTACCGCACTTGCAGTACCAGCTCAGCTGGTAGCAACAACAGTGCTGAGGGAGCTGGCCTGACCGATAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 72 bp GGTGTCTGGCTTTTTAGGGCAGGCTTCTGGTCAGGATaGTTTGGGTCCCATAGTCGGCGGGTAGTGCCTCCA +
Preference number: 6 (lower is better)
Translates to: GVWLFRAGFWSG*FGSHSRRVVPP
Trigger: TGGAGGCACTACCCGCCGACTATGGGACCCAAACAATCCTGACCAGAAGCCTGCCCTAAAAAGCCAGACACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 72 bp TCAGCCACTCGGAGAAGCCGATGGAGCTCCTGTTGCTaGATGTTCCGCACGTGCTGTTCTATTTCCTCAGGA +
Preference number: 6 (lower is better)
Translates to: SATRRSRWSSCC*MFRTCCSISSG
Trigger: TCCTGAGGAAATAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGTGGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CAA 72 bp GTTGTCAGCCACTCGGAGAAGCCGATGGAGCTCCTGTaGCTGCATGTTCCGCACGTGCTGTTCTATTTCCTC +
Preference number: 6 (lower is better)
Translates to: VVSHSEKPMELL*LHVPHVLFYFL
Trigger: GAGGAAATAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGTGGCTGACAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CAA 90 bp CAGTTCCTGGTTGTCAGCCACTCGGAGAAGCCGATGGAGCTCCTGTaGCTGCATGTTCCGCACGTGCTGTTCTATTTCCTCAGGACTCAT +
Preference number: 6 (lower is better)
Translates to: QFLVVSHSEKPMELL*LHVPHVLFYFLRTH
Trigger: ATGAGTCCTGAGGAAATAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGTGGCTGACAACCAGGAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS TCA 72 bp GACTCAGTGCCCTGGGCAGACCGAGAATGTGATGGATaGATCCAAATCTCCAGGCGAGTAGTGTCATCCCCA +
Preference number: 6 (lower is better)
Translates to: DSVPWADRECDG*IQISRRVVSSP
Trigger: TGGGGATGACACTACTCGCCTGGAGATTTGGATTCATCCATCACATTCTCGGTCTGCCCAGGGCACTGAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS TCA 72 bp CTTCCCAGACTCAGTGCCCTGGGCAGACCGAGAATGTaGTGGATGAATCCAAATCTCCAGGCGAGTAGTGTC +
Preference number: 6 (lower is better)
Translates to: LPRLSALGRPRM*WMNPNLQASSV
Trigger: GACACTACTCGCCTGGAGATTTGGATTCATCCATCACATTCTCGGTCTGCCCAGGGCACTGAGTCTGGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 72 bp AGCCGATGGAGCTCCTGTTGCTGCATGTTCCGCACGTaGTGTTCTATTTCCTCAGGACTCATGGTGCTAGCA +
Preference number: 6 (lower is better)
Translates to: SRWSSCCCMFRT*CSISSGLMVLA
Trigger: TGCTAGCACCATGAGTCCTGAGGAAATAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 72 bp TTGTCAGCCACTCGGAGAAGCCGATGGAGCTCCTGTTaGTGCATGTTCCGCACGTGCTGTTCTATTTCCTCA +
Preference number: 6 (lower is better)
Translates to: LSATRRSRWSSC*CMFRTCCSISS
Trigger: TGAGGAAATAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCTTCTCCGAGTGGCTGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 72 bp GACCATTCTCCTGCTCAGAATCCTTCCCAGACTCAGTaGCCTGGGCAGACCGAGAATGTGATGGATGAATCC +
Preference number: 6 (lower is better)
Translates to: DHSPAQNPSQTQ*PGQTENVMDES
Trigger: GGATTCATCCATCACATTCTCGGTCTGCCCAGGGCACTGAGTCTGGGAAGGATTCTGAGCAGGAGAATGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CCA 72 bp CAGCTCCCTCAGCACTGTTGTTGCTACCAGCTGAGCTaGTACTGCAAGTGCGGTAGCGATTCCTTCTCTTGT +
Preference number: 6 (lower is better)
Translates to: QLPQHCCCYQLS*YCKCGSDSFSC
Trigger: ACAAGAGAAGGAATCGCTACCGCACTTGCAGTACCAGCTCAGCTGGTAGCAACAACAGTGCTGAGGGAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 72 bp TCCGGAGAACCTGATGAACTGACAGATAGGGCAGTGTaGGCAGGCAGAATCAGGATACCACGACCACGATCT +
Preference number: 6 (lower is better)
Translates to: SGEPDELTDRAV*AGRIRIPRPRS
Trigger: AGATCGTGGTCGTGGTATCCTGATTCTGCCTGCCCACACTGCCCTATCTGTCAGTTCATCAGGTTCTCCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 72 bp CAGAATCAGGATACCACGACCACGATCTCGAAGTTCTaGTCTCGGGTGTCTGAGCTCCTGCTTCTCAGAGCC +
Preference number: 6 (lower is better)
Translates to: QNQDTTTTISKF*SRVSELLLLRA
Trigger: GGCTCTGAGAAGCAGGAGCTCAGACACCCGAGACAAGAACTTCGAGATCGTGGTCGTGGTATCCTGATTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS TCA 72 bp TTGGTTGAGGATCTCTTCTTCATCTGCCCTGCCTGCTaGCTCTTTGGTAATGGTCTGCAACCGCCTTCCAGG +
Preference number: 6 (lower is better)
Translates to: LVEDLFFICPAC*LFGNGLQPPSR
Trigger: CCTGGAAGGCGGTTGCAGACCATTACCAAAGAGTCAGCAGGCAGGGCAGATGAAGAAGAGATCCTCAACCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 72 bp CCTCAGCACTGTTGTTGCTACCAGCTGAGCTGGTACTaGAAGTGCGGTAGCGATTCCTTCTCTTGTCTGATC +
Preference number: 6 (lower is better)
Translates to: PQHCCCYQLSWY*KCGSDSFSCLI
Trigger: GATCAGACAAGAGAAGGAATCGCTACCGCACTTGCAGTACCAGCTCAGCTGGTAGCAACAACAGTGCTGAGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 90 bp CTGAGCTCCTGCTTCTCAGAGCCCTTACCCCCACTGCTTGGGCCTTaGTCAGACTTCATTCTATCCACATTATCTTTGACTGACCTCACC +
Preference number: 6 (lower is better)
Translates to: LSSCFSEPLPPLLGP*SDFILSTLSLTDLT
Trigger: GGTGAGGTCAGTCAAAGATAATGTGGATAGAATGAAGTCTGACAAAGGCCCAAGCAGTGGGGGTAAGGGCTCTGAGAAGCAGGAGCTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 72 bp CACTGTTGTTGCTACCAGCTGAGCTGGTACTGCAAGTaGGGTAGCGATTCCTTCTCTTGTCTGATCTCGAGT +
Preference number: 6 (lower is better)
Translates to: HCCCYQLSWYCK*GSDSFSCLISS
Trigger: ACTCGAGATCAGACAAGAGAAGGAATCGCTACCGCACTTGCAGTACCAGCTCAGCTGGTAGCAACAACAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 72 bp GCTATAGCCTGCATAGGGATACTGAGAGGCAGGGCCTaGTGTCCGAGGGTAATAATAGGGGTTATCAGAGTT +
Preference number: 6 (lower is better)
Translates to: AIACIGILRGRA*CPRVIIGVIRV
Trigger: AACTCTGATAACCCCTATTATTACCCTCGGACACCAGGCCCTGCCTCTCAGTATCCCTATGCAGGCTATAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 90 bp TCTCCCTTACACTCATCCTCCTCTATCCTCAACTGCTCCACTTGGTaGAGGATCTCTTCTTCATCTGCCCTGCCTGCTGACTCTTTGGTA +
Preference number: 6 (lower is better)
Translates to: SPLHSSSSILNCSTW*RISSSSALPADSLV
Trigger: TACCAAAGAGTCAGCAGGCAGGGCAGATGAAGAAGAGATCCTCAACCAAGTGGAGCAGTTGAGGATAGAGGAGGATGAGTGTAAGGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS TCA 72 bp GGTACTGCAAGTGCGGTAGCGATTCCTTCTCTTGTCTaGTCTCGAGTATCTCTTTACAGAGCCAGGCTTTCC +
Preference number: 6 (lower is better)
Translates to: GTASAVAIPSLV*SRVSLYRARLS
Trigger: GGAAAGCCTGGCTCTGTAAAGAGATACTCGAGATCAGACAAGAGAAGGAATCGCTACCGCACTTGCAGTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 72 bp GCTTCTCCCTTACACTCATCCTCCTCTATCCTCAACTaGTCCACTTGGTTGAGGATCTCTTCTTCATCTGCC +
Preference number: 6 (lower is better)
Translates to: ASPLHSSSSILN*STWLRISSSSA
Trigger: GGCAGATGAAGAAGAGATCCTCAACCAAGTGGAGCAGTTGAGGATAGAGGAGGATGAGTGTAAGGGAGAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 72 bp CCCTCATCTAAGAGCTCCAAGAGTCTGTTCCGAATCTaGTCTGGGTTCTCACTGTTTGGATCCTTGAGAAGC +
Preference number: 6 (lower is better)
Translates to: PSSKSSKSLFRI*SGFSLFGSLRS
Trigger: GCTTCTCAAGGATCCAAACAGTGAGAACCCAGAGCAGATTCGGAACAGACTCTTGGAGCTCTTAGATGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 72 bp AGCCTTCAGATACCAACTGCGAGCCTTCCCATAGTTTaGTGTATCGTTGGCTTGCTCCCGATACCTAGAGAT +
Preference number: 6 (lower is better)
Translates to: SLQIPTASLPIV*CIVGLLPIPRD
Trigger: ATCTCTAGGTATCGGGAGCAAGCCAACGATACAGCAAACTATGGGAAGGCTCGCAGTTGGTATCTGAAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 72 bp TCTTGGGAGCAATGTGCTGAGCCTTCAGATACCAACTaGGAGCCTTCCCATAGTTTGCTGTATCGTTGGCTT +
Preference number: 6 (lower is better)
Translates to: SWEQCAEPSDTN*EPSHSLLYRWL
Trigger: AAGCCAACGATACAGCAAACTATGGGAAGGCTCGCAGTTGGTATCTGAAGGCTCAGCACATTGCTCCCAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 72 bp CAATACTTGGAACTCCTTAAGGACCTTCTCAGCCACTaGAGGGAATGTCTCCATCCCAATCCGGGTAAACAG +
Preference number: 6 (lower is better)
Translates to: QYLELLKDLLSH*RECLHPNPGKQ
Trigger: CTGTTTACCCGGATTGGGATGGAGACATTCCCTGCAGTGGCTGAGAAGGTCCTTAAGGAGTTCCAAGTATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 90 bp CTAGGACATCAGGCTCATCAACTCTGTCCTCATCTAAGGAATCAGTaGAGGACAAAGATACCTGCTTCTTCAGTCGTGGCCTCTCCTTGG +
Preference number: 6 (lower is better)
Translates to: LGHQAHQLCPHLRNQ*RTKIPASSVVASPW
Trigger: CCAAGGAGAGGCCACGACTGAAGAAGCAGGTATCTTTGTCCTCAACTGATTCCTTAGATGAGGACAGAGTTGATGAGCCTGATGTCCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 72 bp CAGGCTCATCAACTCTGTCCTCATCTAAGGAATCAGTaGAGGACAAAGATACCTGCTTCTTCAGTCGTGGCC +
Preference number: 6 (lower is better)
Translates to: QAHQLCPHLRNQ*RTKIPASSVVA
Trigger: GGCCACGACTGAAGAAGCAGGTATCTTTGTCCTCAACTGATTCCTTAGATGAGGACAGAGTTGATGAGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 72 bp ACTGCGAGCCTTCCCATAGTTTGCTGTATCGTTGGCTaGCTCCCGATACCTAGAGATATCTCCTTGGCAAAT +
Preference number: 6 (lower is better)
Translates to: TASLPIVCCIVG*LPIPRDISLAN
Trigger: ATTTGCCAAGGAGATATCTCTAGGTATCGGGAGCAAGCCAACGATACAGCAAACTATGGGAAGGCTCGCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CAA 90 bp CAGATACCAACTGCGAGCCTTCCCATAGTTTGCTGTATCGTTGGCTaGCTCCCGATACCTAGAGATATCTCCTTGGCAAATCATACTTCG +
Preference number: 6 (lower is better)
Translates to: QIPTASLPIVCCIVG*LPIPRDISLANHTS
Trigger: CGAAGTATGATTTGCCAAGGAGATATCTCTAGGTATCGGGAGCAAGCCAACGATACAGCAAACTATGGGAAGGCTCGCAGTTGGTATCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CAA 90 bp CCACTGCTTGGGCCTTTGTCAGACTTCATTCTATCCACATTATCTTaGACTGACCTCACCACAGGGGAGTCTTTACTCATGGTTTCTGCA +
Preference number: 6 (lower is better)
Translates to: PLLGPLSDFILSTLS*TDLTTGESLLMVSA
Trigger: TGCAGAAACCATGAGTAAAGACTCCCCTGTGGTGAGGTCAGTCAAAGATAATGTGGATAGAATGAAGTCTGACAAAGGCCCAAGCAGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS TCA 72 bp GGGCTAATTTCATCATCAGTGTCCAAGAAATGTAGCTaGGGTGTCTGGCTTTTTAGGGCAGGCTTCTGGTCA +
Preference number: 6 (lower is better)
Translates to: GLISSSVSKKCS*GVWLFRAGFWS
Trigger: TGACCAGAAGCCTGCCCTAAAAAGCCAGACACCTCAGCTACATTTCTTGGACACTGATGATGAAATTAGCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 72 bp ATCCAAATCTCCAGGCGAGTAGTGTCATCCCCAACATaGCGGAAAGTAGACTTCTTTCCTTTTCGCCACTTA +
Preference number: 6 (lower is better)
Translates to: IQISRRVVSSPT*RKVDFFPFRHL
Trigger: TAAGTGGCGAAAAGGAAAGAAGTCTACTTTCCGGCATGTTGGGGATGACACTACTCGCCTGGAGATTTGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 72 bp AGCATACGGGTACTTCCAATAGGAGATGGGCTATGCTaGAGCAATACTTGGAACTCCTTAAGGACCTTCTCA +
Preference number: 6 (lower is better)
Translates to: SIRVLPIGDGLC*SNTWNSLRTFS
Trigger: TGAGAAGGTCCTTAAGGAGTTCCAAGTATTGCTGCAGCATAGCCCATCTCCTATTGGAAGTACCCGTATGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CCA 72 bp TCCATCCCAATCCGGGTAAACAGCTTCCCATGGGCATaGAGAAAACTGAGGATGAACCTTTTGTTCAGATCA +
Preference number: 6 (lower is better)
Translates to: SIPIRVNSFPWA*RKLRMNLLFRS
Trigger: TGATCTGAACAAAAGGTTCATCCTCAGTTTTCTCCATGCCCATGGGAAGCTGTTTACCCGGATTGGGATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 72 bp AAAGTGACACGAAGGGCACTTCGGTTTTCTTTACCATaGCTTTTCTGTTCACCCTCACCACAGCCAGACCAA +
Preference number: 6 (lower is better)
Translates to: KVTRRALRFSLP*LFCSPSPQPDQ
Trigger: TTGGTCTGGCTGTGGTGAGGGTGAACAGAAAAGCAATGGTAAAGAAAACCGAAGTGCCCTTCGTGTCACTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 72 bp ATCGTTGGCTTGCTCCCGATACCTAGAGATATCTCCTaGGCAAATCATACTTCGTTGAGCACTGATCAAGGC +
Preference number: 6 (lower is better)
Translates to: IVGLLPIPRDIS*ANHTSLSTDQG
Trigger: GCCTTGATCAGTGCTCAACGAAGTATGATTTGCCAAGGAGATATCTCTAGGTATCGGGAGCAAGCCAACGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS TCA 72 bp GGCCTTTGTCAGACTTCATTCTATCCACATTATCTTTaGCTGACCTCACCACAGGGGAGTCTTTACTCATGG +
Preference number: 6 (lower is better)
Translates to: GLCQTSFYPHYL*LTSPQGSLYSW
Trigger: CCATGAGTAAAGACTCCCCTGTGGTGAGGTCAGTCAAAGATAATGTGGATAGAATGAAGTCTGACAAAGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 72 bp GGGCCTTTGTCAGACTTCATTCTATCCACATTATCTTaGACTGACCTCACCACAGGGGAGTCTTTACTCATG +
Preference number: 6 (lower is better)
Translates to: GPLSDFILSTLS*TDLTTGESLLM
Trigger: CATGAGTAAAGACTCCCCTGTGGTGAGGTCAGTCAAAGATAATGTGGATAGAATGAAGTCTGACAAAGGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS CAA 90 bp GTTTGCTGTATCGTTGGCTTGCTCCCGATACCTAGAGATATCTCCTaGGCAAATCATACTTCGTTGAGCACTGATCAAGGCATATTTCAC +
Preference number: 6 (lower is better)
Translates to: VCCIVGLLPIPRDIS*ANHTSLSTDQGIFH
Trigger: GTGAAATATGCCTTGATCAGTGCTCAACGAAGTATGATTTGCCAAGGAGATATCTCTAGGTATCGGGAGCAAGCCAACGATACAGCAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS GCA 72 bp CGCCACTTATCAGGGCTCATATCAAATTCCTCATGCTaGTTCTTTTCCATCTGTTCAGCCTTTCGTTTAGTC +
Preference number: 6 (lower is better)
Translates to: RHLSGLISNSSC*FFSICSAFRLV
Trigger: GACTAAACGAAAGGCTGAACAGATGGAAAAGAAGCAGCATGAGGAATTTGATATGAGCCCTGATAAGTGGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CAA 72 bp CTGTGCCTGACTATTTTCTGCATCTATAGGGCCATTTaGCTGTTGGCTGTCCAATTCCTTGCAAACTTGAAT +
Preference number: 6 (lower is better)
Translates to: LCLTIFCIYRAI*LLAVQFLANLN
Trigger: ATTCAAGTTTGCAAGGAATTGGACAGCCAACAGCAAAATGGCCCTATAGATGCAGAAAATAGTCAGGCACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS TCA 72 bp CCATTTTGCTGTTGGCTGTCCAATTCCTTGCAAACTTaGATAAGCTGTGTATCATTCCCAACAGCAGAAGAA +
Preference number: 6 (lower is better)
Translates to: PFCCWLSNSLQT*ISCVSFPTAEE
Trigger: TTCTTCTGCTGTTGGGAATGATACACAGCTTATTCAAGTTTGCAAGGAATTGGACAGCCAACAGCAAAATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 72 bp TTTCGCCACTTATCAGGGCTCATATCAAATTCCTCATaGTGCTTCTTTTCCATCTGTTCAGCCTTTCGTTTA +
Preference number: 6 (lower is better)
Translates to: FRHLSGLISNSS*CFFSICSAFRL
Trigger: TAAACGAAAGGCTGAACAGATGGAAAAGAAGCAGCATGAGGAATTTGATATGAGCCCTGATAAGTGGCGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS TCA 72 bp GTTTTGAAATTTATAGTAAGATGCTTGGGCCTGACGTaGATCACCCCAAGATGTAGGGCTAATTTCATCATC +
Preference number: 6 (lower is better)
Translates to: VLKFIVRCLGLT*ITPRCRANFII
Trigger: GATGATGAAATTAGCCCTACATCTTGGGGTGATTCACGTCAGGCCCAAGCATCTTACTATAAATTTCAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 72 bp GCTTATAGATTTCCAAATCTGGACGCCTATTATCTTTaGGCTGTCTGGGTTCCTTTAGTTCCTTCATGTTTT +
Preference number: 6 (lower is better)
Translates to: AYRFPNLDAYYL*AVWVPLVPSCF
Trigger: AAAACATGAAGGAACTAAAGGAACCCAGACAGCGCAAAGATAATAGGCGTCCAGATTTGGAAATCTATAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS GCA 72 bp TCTCCCTTGGCAGTTCTTACACGGTCATTACTTTGGTaGTTTTCTATCTCGGTTTTATCCGGTTTGTTATTA +
Preference number: 6 (lower is better)
Translates to: SPLAVLTRSLLW*FSISVLSGLLL
Trigger: TAATAACAAACCGGATAAAACCGAGATAGAAAAGCACCAAAGTAATGACCGTGTAAGAACTGCCAAGGGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045281.13
CDS TCA 72 bp AGATATCTCCTTGGCAAATCATACTTCGTTGAGCACTaGTCAAGGCATATTTCACTGTTTTTCGTAAAGGCT +
Preference number: 6 (lower is better)
Translates to: RYLLGKSYFVEH*SRHISLFFVKA
Trigger: AGCCTTTACGAAAAACAGTGAAATATGCCTTGATCAGTGCTCAACGAAGTATGATTTGCCAAGGAGATATCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS TCA 72 bp TACCTAGAGATATCTCCTTGGCAAATCATACTTCGTTaGGCACTGATCAAGGCATATTTCACTGTTTTTCGT +
Preference number: 6 (lower is better)
Translates to: YLEISPWQIILR*ALIKAYFTVFR
Trigger: ACGAAAAACAGTGAAATATGCCTTGATCAGTGCTCAACGAAGTATGATTTGCCAAGGAGATATCTCTAGGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8
CDS CAA 72 bp ATACCTAGAGATATCTCCTTGGCAAATCATACTTCGTaGAGCACTGATCAAGGCATATTTCACTGTTTTTCG +
Preference number: 6 (lower is better)
Translates to: IPRDISLANHTS*STDQGIFHCFS
Trigger: CGAAAAACAGTGAAATATGCCTTGATCAGTGCTCAACGAAGTATGATTTGCCAAGGAGATATCTCTAGGTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045281.13
ENSMUST00000130145.8