Pregenerated sensors for SMCP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074435Ensembl transcript IDs: ENSMUST00000098888.7, ENSMUST00000194965.6
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | ATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGGTAGCTTATGGTTGGTAATCCTATACCCTTaGAAAAAGGGCATGGTGTCA | + |
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Preference number: 3 (lower is better) Translates to: ISSCNSSLQLGRNGSLWLVILYP*KKGMVS Trigger: TGACACCATGCCCTTTTTCAAAGGGTATAGGATTAC...CAACCATAAGCTACCATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| 3UTR-3UTR CAA 90 bp | GACTTGTTGGTTATTGTGAAAACAGCATCTTTACAACATAGTCTTAGCCTGACCGTAATCCTATACCCTTaGAAAAAGGGCATGGTGTCA | + |
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Preference number: 3 (lower is better) Translates to: DLLVIVKTASLQHSLSLTVILYP*KKGMVS Trigger: TGACACCATGCCCTTTTTCAAAGGGTATAGGATTAC...GGTCAGGCTAAGACTATGTTGTAAAGATGCTGTTTTCACAATAACCAACAAGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | CCTTTTCTACCTTCCATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGCGGACAAGGACAGGTaGCTGGACAGGGACAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: PFLPSISSCNSSLQLGRNADKDR*LDRDRD Trigger: GTCCCTGTCCCTGTCCAGCCACCTGTCCTTGTCCGC...ATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAATGGAAGGTAGAAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR GCA 90 bp | ATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGGTAGCTTATGGTTGGCTGTGGGCAGCAGGTaGACTTTTTGGGGCAGCACG | + |
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Preference number: 4 (lower is better) Translates to: ISSCNSSLQLGRNGSLWLAVGSR*TFWGST Trigger: CGTGCTGCCCCAAAAAGTGCACCTGCTGCCCACAGC...CAACCATAAGCTACCATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | GACTTGTTGGTTATTGTGAAAACAGCATCTTTACAACATAGTCTTAGCCTGACCAGCGCAGCAAGGAGGTaGCTGTGGGCAGCAGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: DLLVIVKTASLQHSLSLTSAARR*LWAAGA Trigger: TGCACCTGCTGCCCACAGCCACCTCCTTGCTGCGCT...GGTCAGGCTAAGACTATGTTGTAAAGATGCTGTTTTCACAATAACCAACAAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR TCA 90 bp | ATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGGTAGCTTATGGTTGTGGTTCCAGTTGCCTTaGGCACCTGGTGGGGACTGT | + |
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Preference number: 4 (lower is better) Translates to: ISSCNSSLQLGRNGSLWLWFQLP*APGGDC Trigger: ACAGTCCCCACCAGGTGCTCAAGGCAACTGGAACCA...CAACCATAAGCTACCATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR TCA 90 bp | CCTTTTCTACCTTCCATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATTGGTTCCAGTTGCCTTaGGCACCTGGTGGGGACTGT | + |
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Preference number: 4 (lower is better) Translates to: PFLPSISSCNSSLQLGRNWFQLP*APGGDC Trigger: ACAGTCCCCACCAGGTGCTCAAGGCAACTGGAACCA...ATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAATGGAAGGTAGAAAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | CCTTTTCTACCTTCCATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATTGGGCAACATGGTTTTaGTGGGCAGCATGGAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: PFLPSISSCNSSLQLGRNWATWF*WAAWRG Trigger: CCCCCTCCATGCTGCCCACCAAAACCATGTTGCCCA...ATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAATGGAAGGTAGAAAAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | ATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGGTAGCTTATGGTTGCTTGGGTGGGCAGCATaGGGATTTGGGACAGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: ISSCNSSLQLGRNGSLWLLGWAA*GFGTAR Trigger: CCTTGCTGTCCCAAATCCCCATGCTGCCCACCCAAG...CAACCATAAGCTACCATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | CCTTTTCTACCTTCCATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATCTTGGGTGGGCAGCATaGGGATTTGGGACAGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: PFLPSISSCNSSLQLGRNLGWAA*GFGTAR Trigger: CCTTGCTGTCCCAAATCCCCATGCTGCCCACCCAAG...ATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAATGGAAGGTAGAAAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR TCA 90 bp | ATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGGTAGCTTATGGTTGGGGGACTGTGGTGATTaGGAGCCCTTCTCCAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: ISSCNSSLQLGRNGSLWLGDCGD*EPFSRV Trigger: AACTCTGGAGAAGGGCTCTCAATCACCACAGTCCCC...CAACCATAAGCTACCATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR TCA 90 bp | CCTTTTCTACCTTCCATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGGGGACTGTGGTGATTaGGAGCCCTTCTCCAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: PFLPSISSCNSSLQLGRNGDCGD*EPFSRV Trigger: AACTCTGGAGAAGGGCTCTCAATCACCACAGTCCCC...ATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAATGGAAGGTAGAAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR TCA 90 bp | GACTTGTTGGTTATTGTGAAAACAGCATCTTTACAACATAGTCTTAGCCTGACCTGGTGGGGACTGTGGTaGTTGAGAGCCCTTCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: DLLVIVKTASLQHSLSLTWWGLW*LRALLQ Trigger: CTGGAGAAGGGCTCTCAATCACCACAGTCCCCACCA...GGTCAGGCTAAGACTATGTTGTAAAGATGCTGTTTTCACAATAACCAACAAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | GACTTGTTGGTTATTGTGAAAACAGCATCTTTACAACATAGTCTTAGCCTGACCTGGGCAACATGGTTTTaGTGGGCAGCATGGAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: DLLVIVKTASLQHSLSLTWATWF*WAAWRG Trigger: CCCCCTCCATGCTGCCCACCAAAACCATGTTGCCCA...GGTCAGGCTAAGACTATGTTGTAAAGATGCTGTTTTCACAATAACCAACAAGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | CCTTTTCTACCTTCCATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATACAGGGACAGGGCTTTaGAGGGCAACATGGGGACTT | + |
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Preference number: 4 (lower is better) Translates to: PFLPSISSCNSSLQLGRNTGTGL*RATWGL Trigger: AAGTCCCCATGTTGCCCTCCAAAGCCCTGTCCCTGT...ATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAATGGAAGGTAGAAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | CCTTTTCTACCTTCCATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATCTTCTGTGGGCAGCATaGTGGTTTCAGCGGACAAGG | + |
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Preference number: 4 (lower is better) Translates to: PFLPSISSCNSSLQLGRNLLWAA*WFQRTR Trigger: CCTTGTCCGCTGAAACCACCATGCTGCCCACAGAAG...ATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAATGGAAGGTAGAAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | ATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGGTAGCTTATGGTTGGCAAGGAGGTGGCTGTaGGCAGCAGGTGCACTTTTT | + |
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Preference number: 4 (lower is better) Translates to: ISSCNSSLQLGRNGSLWLARRWL*AAGALF Trigger: AAAAAGTGCACCTGCTGCCCACAGCCACCTCCTTGC...CAACCATAAGCTACCATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | GACTTGTTGGTTATTGTGAAAACAGCATCTTTACAACATAGTCTTAGCCTGACCCTTCTGTGGGCAGCATaGTGGTTTCAGCGGACAAGG | + |
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Preference number: 4 (lower is better) Translates to: DLLVIVKTASLQHSLSLTLLWAA*WFQRTR Trigger: CCTTGTCCGCTGAAACCACCATGCTGCCCACAGAAG...GGTCAGGCTAAGACTATGTTGTAAAGATGCTGTTTTCACAATAACCAACAAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | ATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGGTAGCTTATGGTTGGCACGAACACTTCTGTaGGCAGCATGGTGGTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: ISSCNSSLQLGRNGSLWLARTLL*AAWWFQ Trigger: CTGAAACCACCATGCTGCCCACAGAAGTGTTCGTGC...CAACCATAAGCTACCATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | GACTTGTTGGTTATTGTGAAAACAGCATCTTTACAACATAGTCTTAGCCTGACCGCAAGGAGGTGGCTGTaGGCAGCAGGTGCACTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: DLLVIVKTASLQHSLSLTARRWL*AAGALF Trigger: AAAAAGTGCACCTGCTGCCCACAGCCACCTCCTTGC...GGTCAGGCTAAGACTATGTTGTAAAGATGCTGTTTTCACAATAACCAACAAGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR TCA 90 bp | CCTTTTCTACCTTCCATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATCTCAGTCTTGTTCTCTaGAGAGCAGCAGGTAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: PFLPSISSCNSSLQLGRNLSLVL*RAAGRL Trigger: CAACCTACCTGCTGCTCTTCAGAGAACAAGACTGAG...ATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAATGGAAGGTAGAAAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | ATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGGTAGCTTATGGTTGTTTAGGTGGGCAACATaGTTTTGGTGGGCAGCATGG | + |
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Preference number: 4 (lower is better) Translates to: ISSCNSSLQLGRNGSLWLFRWAT*FWWAAW Trigger: CCATGCTGCCCACCAAAACCATGTTGCCCACCTAAA...CAACCATAAGCTACCATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | GACTTGTTGGTTATTGTGAAAACAGCATCTTTACAACATAGTCTTAGCCTGACCTTTGGGACAGCAAGGTaGTTTCTGTGGACAGCACGG | + |
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Preference number: 4 (lower is better) Translates to: DLLVIVKTASLQHSLSLTFGTAR*FLWTAR Trigger: CCGTGCTGTCCACAGAAACCACCTTGCTGTCCCAAA...GGTCAGGCTAAGACTATGTTGTAAAGATGCTGTTTTCACAATAACCAACAAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR TCA 90 bp | GACTTGTTGGTTATTGTGAAAACAGCATCTTTACAACATAGTCTTAGCCTGACCCTCAGTCTTGTTCTCTaGAGAGCAGCAGGTAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: DLLVIVKTASLQHSLSLTLSLVL*RAAGRL Trigger: CAACCTACCTGCTGCTCTTCAGAGAACAAGACTGAG...GGTCAGGCTAAGACTATGTTGTAAAGATGCTGTTTTCACAATAACCAACAAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | GACTTGTTGGTTATTGTGAAAACAGCATCTTTACAACATAGTCTTAGCCTGACCTTTAGGTGGGCAACATaGTTTTGGTGGGCAGCATGG | + |
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Preference number: 4 (lower is better) Translates to: DLLVIVKTASLQHSLSLTFRWAT*FWWAAW Trigger: CCATGCTGCCCACCAAAACCATGTTGCCCACCTAAA...GGTCAGGCTAAGACTATGTTGTAAAGATGCTGTTTTCACAATAACCAACAAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | ATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGGTAGCTTATGGTTGCCCTTCTCCAGAGTTTaGCCAGATGTATCAGAATCT | + |
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Preference number: 4 (lower is better) Translates to: ISSCNSSLQLGRNGSLWLPFSRV*PDVSES Trigger: AGATTCTGATACATCTGGCCAAACTCTGGAGAAGGG...CAACCATAAGCTACCATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CCA 90 bp | CCTTTTCTACCTTCCATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATCCCTTCTCCAGAGTTTaGCCAGATGTATCAGAATCT | + |
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Preference number: 4 (lower is better) Translates to: PFLPSISSCNSSLQLGRNPFSRV*PDVSES Trigger: AGATTCTGATACATCTGGCCAAACTCTGGAGAAGGG...ATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAATGGAAGGTAGAAAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS CCA 90 bp | GGGAGGACAGGGACAGGGCTTTGGAGGGCAACATGGGGACTTGGGTaGGCAGCATGGGGATTTGGGACAGCAAGGTGGTTTCTGTGGACA | + |
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Preference number: 5 (lower is better) Translates to: GRTGTGLWRATWGLG*AAWGFGTARWFLWT Trigger: TGTCCACAGAAACCACCTTGCTGTCCCAAATCCCCATGCTGCCCACCCAAGTCCCCATGTTGCCCTCCAAAGCCCTGTCCCTGTCCTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS CCA 90 bp | GTTGAGCGCAGCAAGGAGGTGGCTGTGGGCAGCAGGTGCACTTTTTaGGGCAGCACGAACACTTCTGTGGGCAGCATGGTGGTTTCAGCG | + |
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Preference number: 5 (lower is better) Translates to: VERSKEVAVGSRCTF*GSTNTSVGSMVVSA Trigger: CGCTGAAACCACCATGCTGCCCACAGAAGTGTTCGTGCTGCCCCAAAAAGTGCACCTGCTGCCCACAGCCACCTCCTTGCTGCGCTCAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS CCA 90 bp | GGTGCACTTTTTGGGGCAGCACGAACACTTCTGTGGGCAGCATGGTaGTTTCAGCGGACAAGGACAGGTGGCTGGACAGGGACAGGGACA | + |
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Preference number: 5 (lower is better) Translates to: GALFGAARTLLWAAW*FQRTRTGGWTGTGT Trigger: TGTCCCTGTCCCTGTCCAGCCACCTGTCCTTGTCCGCTGAAACCACCATGCTGCCCACAGAAGTGTTCGTGCTGCCCCAAAAAGTGCACC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS CCA 90 bp | CTGTGGGCAGCAGGTGCACTTTTTGGGGCAGCACGAACACTTCTGTaGGCAGCATGGTGGTTTCAGCGGACAAGGACAGGTGGCTGGACA | + |
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Preference number: 5 (lower is better) Translates to: LWAAGALFGAARTLL*AAWWFQRTRTGGWT Trigger: TGTCCAGCCACCTGTCCTTGTCCGCTGAAACCACCATGCTGCCCACAGAAGTGTTCGTGCTGCCCCAAAAAGTGCACCTGCTGCCCACAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CAA 90 bp | ATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGGTAGCTTATGGTTGGTGGGCAACATGGTTTaGGTGGGCAGCATGGAGGGG | + |
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Preference number: 5 (lower is better) Translates to: ISSCNSSLQLGRNGSLWLVGNMV*VGSMEG Trigger: CCCCTCCATGCTGCCCACCAAAACCATGTTGCCCAC...CAACCATAAGCTACCATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CAA 90 bp | CCTTTTCTACCTTCCATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATGTGGGCAACATGGTTTaGGTGGGCAGCATGGAGGGG | + |
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Preference number: 5 (lower is better) Translates to: PFLPSISSCNSSLQLGRNVGNMV*VGSMEG Trigger: CCCCTCCATGCTGCCCACCAAAACCATGTTGCCCAC...ATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAATGGAAGGTAGAAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CAA 90 bp | CCTTTTCTACCTTCCATTTCCAGTTGCAATAGTAGCCTACAGTTAGGTCGAAATAGAGCAGCAGGTAGGTaGAGCGCAGCAAGGAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: PFLPSISSCNSSLQLGRNRAAGR*SAARRW Trigger: CCACCTCCTTGCTGCGCTCAACCTACCTGCTGCTCT...ATTTCGACCTAACTGTAGGCTACTATTGCAACTGGAAATGGAAGGTAGAAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS-3UTR CAA 90 bp | GACTTGTTGGTTATTGTGAAAACAGCATCTTTACAACATAGTCTTAGCCTGACCAGAGCAGCAGGTAGGTaGAGCGCAGCAAGGAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: DLLVIVKTASLQHSLSLTRAAGR*SAARRW Trigger: CCACCTCCTTGCTGCGCTCAACCTACCTGCTGCTCT...GGTCAGGCTAAGACTATGTTGTAAAGATGCTGTTTTCACAATAACCAACAAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS CCA 72 bp | GCAGCAGGTAGGTTGAGCGCAGCAAGGAGGTGGCTGTaGGCAGCAGGTGCACTTTTTGGGGCAGCACGAACA | + |
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Preference number: 6 (lower is better) Translates to: AAGRLSAARRWL*AAGALFGAART Trigger: TGTTCGTGCTGCCCCAAAAAGTGCACCTGCTGCCCACAGCCACCTCCTTGCTGCGCTCAACCTACCTGCTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS CCA 72 bp | TTTGGGGCAGCACGAACACTTCTGTGGGCAGCATGGTaGTTTCAGCGGACAAGGACAGGTGGCTGGACAGGG | + |
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Preference number: 6 (lower is better) Translates to: FGAARTLLWAAW*FQRTRTGGWTG Trigger: CCCTGTCCAGCCACCTGTCCTTGTCCGCTGAAACCACCATGCTGCCCACAGAAGTGTTCGTGCTGCCCCAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS CCA 72 bp | AGCAAGGAGGTGGCTGTGGGCAGCAGGTGCACTTTTTaGGGCAGCACGAACACTTCTGTGGGCAGCATGGTG | + |
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Preference number: 6 (lower is better) Translates to: SKEVAVGSRCTF*GSTNTSVGSMV Trigger: CACCATGCTGCCCACAGAAGTGTTCGTGCTGCCCCAAAAAGTGCACCTGCTGCCCACAGCCACCTCCTTGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS CCA 72 bp | CTTGGGTGGGCAGCATGGGGATTTGGGACAGCAAGGTaGTTTCTGTGGACAGCACGGTTTAGGTGGGCAACA | + |
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Preference number: 6 (lower is better) Translates to: LGWAAWGFGTAR*FLWTARFRWAT Trigger: TGTTGCCCACCTAAACCGTGCTGTCCACAGAAACCACCTTGCTGTCCCAAATCCCCATGCTGCCCACCCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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| CDS TCA 72 bp | GTTCCAGTTGCCTTGAGCACCTGGTGGGGACTGTGGTaGTTGAGAGCCCTTCTCCAGAGTTTGGCCAGATGT | + |
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Preference number: 6 (lower is better) Translates to: VPVALSTWWGLW*LRALLQSLARC Trigger: ACATCTGGCCAAACTCTGGAGAAGGGCTCTCAATCACCACAGTCCCCACCAGGTGCTCAAGGCAACTGGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098888.7 ENSMUST00000194965.6 |
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