Pregenerated sensors for SMCO4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058173Ensembl transcript IDs: ENSMUST00000045620.10, ENSMUST00000178999.3, ENSMUST00000215907.2
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGAAGTGGAGCCGGGAAGCATGCTGCTGGATGGGAGGGCGACTCTaGTCCCAACAGCATCACCCAGAGAGGCTCTCCTCAGGGGCAGCG | + |
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Preference number: 1 (lower is better) Translates to: VKWSREACCWMGGRL*SQQHHPERLSSGAA Trigger: CGCTGCCCCTGAGGAGAGCCTCTCTGGGTGATGCTGTTGGGATCAGAGTCGCCCTCCCATCCAGCAGCATGCTTCCCGGCTCCACTTCAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| 3UTR TCA 90 bp | ATCCCATCAAGCACAGAGAAGAAAGGCTGTCCCCTTAGAAAGTTGTaGAGTGGAGCCGGGAAGCATGCTGCTGGATGGGAGGGCGACTCT | + |
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Preference number: 1 (lower is better) Translates to: IPSSTEKKGCPLRKL*SGAGKHAAGWEGDS Trigger: AGAGTCGCCCTCCCATCCAGCAGCATGCTTCCCGGCTCCACTTCACAACTTTCTAAGGGGACAGCCTTTCTTCTCTGTGCTTGATGGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| 3UTR-3UTR GCA 90 bp | AGAAGAAAGGCTGTCCCCTTAGAAAGTTGTGAAGTGGAGCCGGGAAGCATGCTGCATTTCGGACATCTCTaGAGAGGAAAGCAGAATGGA | + |
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Preference number: 2 (lower is better) Translates to: RRKAVPLESCEVEPGSMLHFGHL*RGKQNG Trigger: TCCATTCTGCTTTCCTCTGCAGAGATGTCCGAAATG...CAGCATGCTTCCCGGCTCCACTTCACAACTTTCTAAGGGGACAGCCTTTCTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| 3UTR-3UTR GCA 90 bp | GGCAGCGATGCATCGATTTCAGGAGAAAAAGGGCCACACACACACACACACACACATTTCGGACATCTCTaGAGAGGAAAGCAGAATGGA | + |
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Preference number: 2 (lower is better) Translates to: GSDASISGEKGPHTHTHTHFGHL*RGKQNG Trigger: TCCATTCTGCTTTCCTCTGCAGAGATGTCCGAAATG...TGTGTGTGTGTGTGTGTGTGGCCCTTTTTCTCCTGAAATCGATGCATCGCTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| 3UTR-3UTR GCA 90 bp | AGCGATGCATCGATTTCAGGAGAAAAAGGGCCACACACACACACACACACACACCATTTCGGACATCTCTaGAGAGGAAAGCAGAATGGA | + |
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Preference number: 2 (lower is better) Translates to: SDASISGEKGPHTHTHTHHFGHL*RGKQNG Trigger: TCCATTCTGCTTTCCTCTGCAGAGATGTCCGAAATG...GTGTGTGTGTGTGTGTGTGTGTGGCCCTTTTTCTCCTGAAATCGATGCATCGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCAGGAGAAAAAGGGCCACACACACACACACACACACACACACACACACAGCAGTCTGAAAGGCACATaGAGTGGACCATCAAGTAAA | + |
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Preference number: 2 (lower is better) Translates to: FQEKKGHTHTHTHTHTHSSLKGT*SGPSSK Trigger: TTTACTTGATGGTCCACTTCATGTGCCTTTCAGACT...GCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCCCTTTTTCTCCTGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| 3UTR-3UTR CAA 90 bp | TGGGAGGGCGACTCTGATCCCAACAGCATCACCCAGAGAGGCTCTCCTCAGGGGCACACACACACAGCTTaGAAGTCTGAAAGGCACATG | + |
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Preference number: 3 (lower is better) Translates to: WEGDSDPNSITQRGSPQGHTHTA*KSERHM Trigger: CATGTGCCTTTCAGACTTCAAAGCTGTGTGTGTGTG...CCCCTGAGGAGAGCCTCTCTGGGTGATGCTGTTGGGATCAGAGTCGCCCTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| 3UTR GCA 72 bp | AGCATCACCCAGAGAGGCTCTCCTCAGGGGCAGCGATaGATCGATTTCAGGAGAAAAAGGGCCACACACACA | + |
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Preference number: 3 (lower is better) Translates to: SITQRGSPQGQR*IDFRRKRATHT Trigger: TGTGTGTGTGGCCCTTTTTCTCCTGAAATCGATGCATCGCTGCCCCTGAGGAGAGCCTCTCTGGGTGATGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| 3UTR-3UTR CAA 90 bp | CCCTTAGAAAGTTGTGAAGTGGAGCCGGGAAGCATGCTGCTGGATGGGAGGGCGCACACACACACAGCTTaGAAGTCTGAAAGGCACATG | + |
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Preference number: 3 (lower is better) Translates to: PLESCEVEPGSMLLDGRAHTHTA*KSERHM Trigger: CATGTGCCTTTCAGACTTCAAAGCTGTGTGTGTGTG...CGCCCTCCCATCCAGCAGCATGCTTCCCGGCTCCACTTCACAACTTTCTAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| 3UTR TCA 72 bp | AGCACAGAGAAGAAAGGCTGTCCCCTTAGAAAGTTGTaGAGTGGAGCCGGGAAGCATGCTGCTGGATGGGAG | + |
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Preference number: 3 (lower is better) Translates to: STEKKGCPLRKL*SGAGKHAAGWE Trigger: CTCCCATCCAGCAGCATGCTTCCCGGCTCCACTTCACAACTTTCTAAGGGGACAGCCTTTCTTCTCTGTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| 3UTR CCA 72 bp | AAGACCAGAGGAGACAGGGCACTCCTGCTCAGAGCTTaGCATTTCGGACATCTCTGCAGAGGAAAGCAGAAT | + |
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Preference number: 3 (lower is better) Translates to: KTRGDRALLLRA*HFGHLCRGKQN Trigger: ATTCTGCTTTCCTCTGCAGAGATGTCCGAAATGCCAAGCTCTGAGCAGGAGTGCCCTGTCTCCTCTGGTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| CDS-3UTR CAA 90 bp | TGGGAGGGCGACTCTGATCCCAACAGCATCACCCAGAGAGGCTCTCCTCAGGGGTGCTTCCGCTCCTTCTaGTCCTTGGAGGTCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: WEGDSDPNSITQRGSPQGCFRSF*SLEVSF Trigger: GAAAGAGACCTCCAAGGACAAGAAGGAGCGGAAGCA...CCCCTGAGGAGAGCCTCTCTGGGTGATGCTGTTGGGATCAGAGTCGCCCTCCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| CDS-3UTR CAA 90 bp | AGAGGAGACAGGGCACTCCTGCTCAGAGCTTGGCATTTCGGACATCTCTGCAGATGCTTCCGCTCCTTCTaGTCCTTGGAGGTCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: RGDRALLLRAWHFGHLCRCFRSF*SLEVSF Trigger: GAAAGAGACCTCCAAGGACAAGAAGGAGCGGAAGCA...TCTGCAGAGATGTCCGAAATGCCAAGCTCTGAGCAGGAGTGCCCTGTCTCCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| CDS-3UTR CAA 90 bp | AGCGATGCATCGATTTCAGGAGAAAAAGGGCCACACACACACACACACACACACCGCTCCTTCTTGTCCTaGGAGGTCTCTTTCTTTGGC | + |
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Preference number: 5 (lower is better) Translates to: SDASISGEKGPHTHTHTHRSFLS*EVSFFG Trigger: GCCAAAGAAAGAGACCTCCAAGGACAAGAAGGAGCG...GTGTGTGTGTGTGTGTGTGTGTGGCCCTTTTTCTCCTGAAATCGATGCATCGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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| CDS-3UTR CAA 90 bp | TCGATTTCAGGAGAAAAAGGGCCACACACACACACACACACACACACACACACATGCTTCCGCTCCTTCTaGTCCTTGGAGGTCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: SISGEKGPHTHTHTHTHTCFRSF*SLEVSF Trigger: GAAAGAGACCTCCAAGGACAAGAAGGAGCGGAAGCA...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCCCTTTTTCTCCTGAAATCGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000045620.10 ENSMUST00000178999.3 ENSMUST00000215907.2 |
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