Pregenerated sensors for SMCO2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030292Ensembl transcript IDs: ENSMUST00000032433.9
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GCTTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGTTGCTTGGTGGGTCCTaGCTGTGCTCGGACTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: ALETCFIGEEECQLSVTLLLGGS*LCSDSC Trigger: GCAGGAGTCCGAGCACAGCCAGGACCCACCAAGCAA...CAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CCA 90 bp | TGCTTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGTGCCCCAGCACGCTaGGCAGCACCCTTTCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: CFRNMLYWRGRVSVIGNFGAPAR*AAPFRR Trigger: TCTTCGAAAGGGTGCTGCCCAGCGTGCTGGGGCACC...AAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR TCA 90 bp | TTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGATCTCTTCTCAGCCAGCTaGCGTTCCTTCCCAGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: LETCFIGEEECQLSVTLDLFSAS*RSFPAV Trigger: GACAGCTGGGAAGGAACGTCAGCTGGCTGAGAAGAG...ATCCAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CCA 90 bp | TTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGATATCGGGTTTGCTTGGTaGGTCCTGGCTGTGCTCGGA | + |
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Preference number: 4 (lower is better) Translates to: LETCFIGEEECQLSVTLDIGFAW*VLAVLG Trigger: TCCGAGCACAGCCAGGACCCACCAAGCAAACCCGAT...ATCCAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CCA 90 bp | TTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGATCTCATCGGGTTTGCTTaGTGGGTCCTGGCTGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: LETCFIGEEECQLSVTLDLIGFA*WVLAVL Trigger: GAGCACAGCCAGGACCCACCAAGCAAACCCGATGAG...ATCCAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR GCA 90 bp | TTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGAGACGAACAGCTTCAGTaGGTTCTTCCACACGGCACT | + |
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Preference number: 4 (lower is better) Translates to: FRNMLYWRGRVSVIGNFGDEQLQ*VLPHGT Trigger: AGTGCCGTGTGGAAGAACGCACTGAAGCTGTTCGTC...TCCAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR TCA 90 bp | TTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGAAACCTTCGGTCATGCTaGCATTTTGGAGATCACGGC | + |
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Preference number: 4 (lower is better) Translates to: FRNMLYWRGRVSVIGNFGNLRSC*HFGDHG Trigger: GCCGTGATCTCCAAAATGTCAGCATGACCGAAGGTT...TCCAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR GCA 90 bp | TTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGATCTTCTCCTCAATGTCTaGCTCCTGATCAGAGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: LETCFIGEEECQLSVTLDLLLNV*LLIRVL Trigger: GAGGACTCTGATCAGGAGGCAGACATTGAGGAGAAG...ATCCAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR TCA 90 bp | TGCTTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTTTCATCTGGTCTGTCTaGGATGTGGTCCATTTCCGA | + |
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Preference number: 4 (lower is better) Translates to: CFRNMLYWRGRVSVIGNFFIWSV*DVVHFR Trigger: TCGGAAATGGACCACATCTCAGACAGACCAGATGAA...AAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR GCA 90 bp | TTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGAACTAGAGTCACTTCTTaGTCATCGGGTTTGCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: FRNMLYWRGRVSVIGNFGTRVTS*SSGLLG Trigger: ACCAAGCAAACCCGATGAGCAAGAAGTGACTCTAGT...TCCAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CCA 90 bp | TGCTTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGTCATGCTGACATTTTaGAGATCACGGCTCTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: CFRNMLYWRGRVSVIGNFVMLTF*RSRLFS Trigger: TGAGAAGAGCCGTGATCTCCAAAATGTCAGCATGAC...AAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CCA 90 bp | TTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGACCGAGTTCTTTCATTTaGAGACCCATCTTTGCATGC | + |
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Preference number: 4 (lower is better) Translates to: FRNMLYWRGRVSVIGNFGPSSFI*RPIFAC Trigger: GCATGCAAAGATGGGTCTCCAAATGAAAGAACTCGG...TCCAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR TCA 90 bp | TGCTTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTCGACCTGAGTCAACTTaGTGTTCACTTCCTTTAATT | + |
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Preference number: 4 (lower is better) Translates to: CFRNMLYWRGRVSVIGNFRPEST*CSLPLI Trigger: AATTAAAGGAAGTGAACATCAAGTTGACTCAGGTCG...AAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAAGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CCA 90 bp | GCTTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGTCCAGATTTTTAGACTaGTTTTCCAGGGATATAACC | + |
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Preference number: 4 (lower is better) Translates to: ALETCFIGEEECQLSVTLSRFLD*FSRDIT Trigger: GGTTATATCCCTGGAAAACCAGTCTAAAAATCTGGA...CAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CCA 90 bp | GCTTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGACATTCATTTCCTTATaGAAGCTCTCTATCTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: ALETCFIGEEECQLSVTLTFISL*KLSICS Trigger: TGAACAGATAGAGAGCTTCCATAAGGAAATGAATGT...CAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAAGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR GCA 90 bp | TGCTTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGCAAGCTCTTCACCGTaGTTTCTGTATTATTTATAT | + |
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Preference number: 4 (lower is better) Translates to: CFRNMLYWRGRVSVIGNFASSSP*FLYYLY Trigger: ATATAAATAATACAGAAAGCACGGTGAAGAGCTTGC...AAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAAGCA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS GCA 90 bp | TTCAAGAAAGGCGCCATCATCTCCCGAAGATCCCACATGGTGCGGTaGCCCAGCACGCTGGGCAGCACCCTTTCGAAGAGAAACGTGGCG | + |
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Preference number: 5 (lower is better) Translates to: FKKGAIISRRSHMVR*PSTLGSTLSKRNVA Trigger: CGCCACGTTTCTCTTCGAAAGGGTGCTGCCCAGCGTGCTGGGGCACCGCACCATGTGGGATCTTCGGGAGATGATGGCGCCTTTCTTGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CCA 90 bp | CCATCATCTCCCGAAGATCCCACATGGTGCGGTGCCCCAGCACGCTaGGCAGCACCCTTTCGAAGAGAAACGTGGCGTCCACAAACAGTA | + |
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Preference number: 5 (lower is better) Translates to: PSSPEDPTWCGAPAR*AAPFRRETWRPQTV Trigger: TACTGTTTGTGGACGCCACGTTTCTCTTCGAAAGGGTGCTGCCCAGCGTGCTGGGGCACCGCACCATGTGGGATCTTCGGGAGATGATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS GCA 90 bp | CTTGAGGGCCCTCGCAAACTAGAGTCACTTCTTGCTCATCGGGTTTaGTTGGTGGGTCCTGGCTGTGCTCGGACTCCTGCTCCAACCCAT | + |
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Preference number: 5 (lower is better) Translates to: LEGPRKLESLLAHRV*LVGPGCARTPAPTH Trigger: ATGGGTTGGAGCAGGAGTCCGAGCACAGCCAGGACCCACCAAGCAAACCCGATGAGCAAGAAGTGACTCTAGTTTGCGAGGGCCCTCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS GCA 90 bp | CTAAATTCAAGAAAGGCGCCATCATCTCCCGAAGATCCCACATGGTaGGGTGCCCCAGCACGCTGGGCAGCACCCTTTCGAAGAGAAACG | + |
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Preference number: 5 (lower is better) Translates to: LNSRKAPSSPEDPTW*GAPARWAAPFRRET Trigger: CGTTTCTCTTCGAAAGGGTGCTGCCCAGCGTGCTGGGGCACCGCACCATGTGGGATCTTCGGGAGATGATGGCGCCTTTCTTGAATTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CCA 90 bp | CTTCTAAATTCAAGAAAGGCGCCATCATCTCCCGAAGATCCCACATaGTGCGGTGCCCCAGCACGCTGGGCAGCACCCTTTCGAAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: LLNSRKAPSSPEDPT*CGAPARWAAPFRRE Trigger: TTCTCTTCGAAAGGGTGCTGCCCAGCGTGCTGGGGCACCGCACCATGTGGGATCTTCGGGAGATGATGGCGCCTTTCTTGAATTTAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS GCA 90 bp | AGAGTCACTTCTTGCTCATCGGGTTTGCTTGGTGGGTCCTGGCTGTaGTCGGACTCCTGCTCCAACCCATCCCATTTTTCAGTGTCCATC | + |
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Preference number: 5 (lower is better) Translates to: RVTSCSSGLLGGSWL*SDSCSNPSHFSVSI Trigger: GATGGACACTGAAAAATGGGATGGGTTGGAGCAGGAGTCCGAGCACAGCCAGGACCCACCAAGCAAACCCGATGAGCAAGAAGTGACTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS GCA 90 bp | GTCACCGTGGTCGGCTCCGAGTTCTTTCATTTGGAGACCCATCTTTaGATGCCAGTAGTTCAGCTTGTGGGTCAAGCTCTCTGGGATCGG | + |
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Preference number: 5 (lower is better) Translates to: VTVVGSEFFHLETHL*MPVVQLVGQALWDR Trigger: CCGATCCCAGAGAGCTTGACCCACAAGCTGAACTACTGGCATGCAAAGATGGGTCTCCAAATGAAAGAACTCGGAGCCGACCACGGTGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CCA 90 bp | CAAACTAGAGTCACTTCTTGCTCATCGGGTTTGCTTGGTGGGTCCTaGCTGTGCTCGGACTCCTGCTCCAACCCATCCCATTTTTCAGTG | + |
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Preference number: 5 (lower is better) Translates to: QTRVTSCSSGLLGGS*LCSDSCSNPSHFSV Trigger: CACTGAAAAATGGGATGGGTTGGAGCAGGAGTCCGAGCACAGCCAGGACCCACCAAGCAAACCCGATGAGCAAGAAGTGACTCTAGTTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CAA 90 bp | TTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGAGCTCATCGGGTTTGCTaGGTGGGTCCTGGCTGTGCT | + |
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Preference number: 5 (lower is better) Translates to: FRNMLYWRGRVSVIGNFGAHRVC*VGPGCA Trigger: AGCACAGCCAGGACCCACCAAGCAAACCCGATGAGC...TCCAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CCA 90 bp | AGGTTTTCAGAAGGTTTGTCTTTTTCATCTGGTCTGTCTGAGATGTaGTCCATTTCCGAAACTTCCTCCGAACCTTCGGTCATGCTGACA | + |
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Preference number: 5 (lower is better) Translates to: RFSEGLSFSSGLSEM*SISETSSEPSVMLT Trigger: TGTCAGCATGACCGAAGGTTCGGAGGAAGTTTCGGAAATGGACCACATCTCAGACAGACCAGATGAAAAAGACAAACCTTCTGAAAACCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CAA 90 bp | TTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGATTCTTGCTCATCGGGTTaGCTTGGTGGGTCCTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: LETCFIGEEECQLSVTLDSCSSG*LGGSWL Trigger: CAGCCAGGACCCACCAAGCAAACCCGATGAGCAAGA...ATCCAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CAA 90 bp | GCTTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGGTCATGCTGACATTTaGGAGATCACGGCTCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: ALETCFIGEEECQLSVTLGHADI*EITALL Trigger: GAGAAGAGCCGTGATCTCCAAAATGTCAGCATGACC...CAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CCA 90 bp | TTTATATTTTGTATAATGTTGTTGATTCTCTCCAACCAGTCACCGTaGTCGGCTCCGAGTTCTTTCATTTGGAGACCCATCTTTGCATGC | + |
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Preference number: 5 (lower is better) Translates to: FIFCIMLLILSNQSP*SAPSSFIWRPIFAC Trigger: GCATGCAAAGATGGGTCTCCAAATGAAAGAACTCGGAGCCGACCACGGTGACTGGTTGGAGAGAATCAACAACATTATACAAAATATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CAA 90 bp | TTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTGGATCCGAGTTCTTTCATTaGGAGACCCATCTTTGCATG | + |
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Preference number: 5 (lower is better) Translates to: FRNMLYWRGRVSVIGNFGSEFFH*ETHLCM Trigger: CATGCAAAGATGGGTCTCCAAATGAAAGAACTCGGA...TCCAAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS-3UTR CAA 90 bp | TGCTTTAGAAACATGCTTTATTGGAGAGGAAGAGTGTCAGTTATCGGTAACTTTAGGTTTTCAGAAGGTTaGTCTTTTTCATCTGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: CFRNMLYWRGRVSVIGNFRFSEG*SFSSGL Trigger: CAGACCAGATGAAAAAGACAAACCTTCTGAAAACCT...AAAGTTACCGATAACTGACACTCTTCCTCTCCAATAAAGCATGTTTCTAAAGCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS GCA 72 bp | GGCGCCATCATCTCCCGAAGATCCCACATGGTGCGGTaGCCCAGCACGCTGGGCAGCACCCTTTCGAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: GAIISRRSHMVR*PSTLGSTLSKR Trigger: TCTCTTCGAAAGGGTGCTGCCCAGCGTGCTGGGGCACCGCACCATGTGGGATCTTCGGGAGATGATGGCGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CCA 72 bp | CCCGAAGATCCCACATGGTGCGGTGCCCCAGCACGCTaGGCAGCACCCTTTCGAAGAGAAACGTGGCGTCCA | + |
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Preference number: 6 (lower is better) Translates to: PEDPTWCGAPAR*AAPFRRETWRP Trigger: TGGACGCCACGTTTCTCTTCGAAAGGGTGCTGCCCAGCGTGCTGGGGCACCGCACCATGTGGGATCTTCGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS GCA 72 bp | AGAAAGGCGCCATCATCTCCCGAAGATCCCACATGGTaGGGTGCCCCAGCACGCTGGGCAGCACCCTTTCGA | + |
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Preference number: 6 (lower is better) Translates to: RKAPSSPEDPTW*GAPARWAAPFR Trigger: TCGAAAGGGTGCTGCCCAGCGTGCTGGGGCACCGCACCATGTGGGATCTTCGGGAGATGATGGCGCCTTTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CCA 72 bp | GTCACTTCTTGCTCATCGGGTTTGCTTGGTGGGTCCTaGCTGTGCTCGGACTCCTGCTCCAACCCATCCCAT | + |
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Preference number: 6 (lower is better) Translates to: VTSCSSGLLGGS*LCSDSCSNPSH Trigger: ATGGGATGGGTTGGAGCAGGAGTCCGAGCACAGCCAGGACCCACCAAGCAAACCCGATGAGCAAGAAGTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS GCA 72 bp | CCTCGCAAACTAGAGTCACTTCTTGCTCATCGGGTTTaGTTGGTGGGTCCTGGCTGTGCTCGGACTCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: PRKLESLLAHRV*LVGPGCARTPA Trigger: AGCAGGAGTCCGAGCACAGCCAGGACCCACCAAGCAAACCCGATGAGCAAGAAGTGACTCTAGTTTGCGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CCA 72 bp | CCAGCACGCTGGGCAGCACCCTTTCGAAGAGAAACGTaGCGTCCACAAACAGTATGTAGCACGACAGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: PARWAAPFRRET*RPQTVCSTTVQ Trigger: CTGGACTGTCGTGCTACATACTGTTTGTGGACGCCACGTTTCTCTTCGAAAGGGTGCTGCCCAGCGTGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CAA 72 bp | CGCAAACTAGAGTCACTTCTTGCTCATCGGGTTTGCTaGGTGGGTCCTGGCTGTGCTCGGACTCCTGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: RKLESLLAHRVC*VGPGCARTPAP Trigger: TGGAGCAGGAGTCCGAGCACAGCCAGGACCCACCAAGCAAACCCGATGAGCAAGAAGTGACTCTAGTTTGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS GCA 72 bp | TCTTGCTCATCGGGTTTGCTTGGTGGGTCCTGGCTGTaGTCGGACTCCTGCTCCAACCCATCCCATTTTTCA | + |
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Preference number: 6 (lower is better) Translates to: SCSSGLLGGSWL*SDSCSNPSHFS Trigger: TGAAAAATGGGATGGGTTGGAGCAGGAGTCCGAGCACAGCCAGGACCCACCAAGCAAACCCGATGAGCAAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CAA 90 bp | GATTCTCTCCAACCAGTCACCGTGGTCGGCTCCGAGTTCTTTCATTaGGAGACCCATCTTTGCATGCCAGTAGTTCAGCTTGTGGGTCAA | + |
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Preference number: 6 (lower is better) Translates to: DSLQPVTVVGSEFFH*ETHLCMPVVQLVGQ Trigger: TTGACCCACAAGCTGAACTACTGGCATGCAAAGATGGGTCTCCAAATGAAAGAACTCGGAGCCGACCACGGTGACTGGTTGGAGAGAATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS GCA 72 bp | GTCGGCTCCGAGTTCTTTCATTTGGAGACCCATCTTTaGATGCCAGTAGTTCAGCTTGTGGGTCAAGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: VGSEFFHLETHL*MPVVQLVGQAL Trigger: GAGAGCTTGACCCACAAGCTGAACTACTGGCATGCAAAGATGGGTCTCCAAATGAAAGAACTCGGAGCCGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CAA 72 bp | CAACCAGTCACCGTGGTCGGCTCCGAGTTCTTTCATTaGGAGACCCATCTTTGCATGCCAGTAGTTCAGCTT | + |
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Preference number: 6 (lower is better) Translates to: QPVTVVGSEFFH*ETHLCMPVVQL Trigger: AAGCTGAACTACTGGCATGCAAAGATGGGTCTCCAAATGAAAGAACTCGGAGCCGACCACGGTGACTGGTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS TCA 72 bp | TCCTTCAATTCACGGGCTTCTTCGCAAGCATCGACCTaGGTCAACTTGATGTTCACTTCCTTTAATTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: SFNSRASSQAST*VNLMFTSFNCL Trigger: AAGGCAATTAAAGGAAGTGAACATCAAGTTGACTCAGGTCGATGCTTGCGAAGAAGCCCGTGAATTGAAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CAA 90 bp | AAGCTCTTCACCGTGCTTTCTGTATTATTTATATTTTGTATAATGTaGTTGATTCTCTCCAACCAGTCACCGTGGTCGGCTCCGAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: KLFTVLSVLFIFCIM*LILSNQSPWSAPSS Trigger: AGAACTCGGAGCCGACCACGGTGACTGGTTGGAGAGAATCAACAACATTATACAAAATATAAATAATACAGAAAGCACGGTGAAGAGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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| CDS CCA 72 bp | ATCTCCAGCTTACTGTTCAAGACATTCATTTCCTTATaGAAGCTCTCTATCTGTTCAACAAGCTTCTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: ISSLLFKTFISL*KLSICSTSFSF Trigger: GAAGGAGAAGCTTGTTGAACAGATAGAGAGCTTCCATAAGGAAATGAATGTCTTGAACAGTAAGCTGGAGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032433.9 |
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