Pregenerated sensors for SMCO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046345Ensembl transcript IDs: ENSMUST00000093183.5
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAGCACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCGACCGAGAGTGGAACTaGTGGGTCAAAGGTAACAGG | + |
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Preference number: 2 (lower is better) Translates to: QHSGGRGRLISEFEASLVDREWN*WVKGNR Trigger: CCTGTTACCTTTGACCCAGCAGTTCCACTCTCGGTC...GACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| 3UTR-3UTR CCA 90 bp | CAGCACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCACAAATGACCGAGAGTaGAACTGCTGGGTCAAAGGT | + |
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Preference number: 2 (lower is better) Translates to: QHSGGRGRLISEFEASLVTNDRE*NCWVKG Trigger: ACCTTTGACCCAGCAGTTCCACTCTCGGTCATTTGT...GACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| 3UTR-3UTR TCA 90 bp | CACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCTACTTTTTAAAATACAAATaGCCGCCGGGCAGTGGTGGC | + |
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Preference number: 2 (lower is better) Translates to: HSGGRGRLISEFEASLVYFLKYK*PPGSGG Trigger: GCCACCACTGCCCGGCGGTCATTTGTATTTTAAAAA...GTAGACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| 3UTR TCA 72 bp | ATCCCAGCACTCGGGAGGCAGAGGCAGGCTGATTTCTaGGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: IPALGRQRQADF*VRGQPGLQSEF Trigger: GAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTGCTGGGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR GCA 90 bp | CAGCACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCTGCAGCCCGTACTCCTaGAGGACAGACTCCCACACA | + |
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Preference number: 4 (lower is better) Translates to: QHSGGRGRLISEFEASLVCSPYS*RTDSHT Trigger: TGTGTGGGAGTCTGTCCTGCAGGAGTACGGGCTGCA...GACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR GCA 90 bp | TCCCAGCACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGCCCAAGGGCCAGAGCTaGTGTCCATATCTCATCCTG | + |
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Preference number: 4 (lower is better) Translates to: SQHSGGRGRLISEFEASLPKGQS*CPYLIL Trigger: CAGGATGAGATATGGACAGCAGCTCTGGCCCTTGGG...CAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTGCTGGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CCA 90 bp | CACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCTACGTCCATATCTCATCCTaGGCTGCTTGGCTTGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: HSGGRGRLISEFEASLVYVHISS*AAWLAK Trigger: TTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGAC...GTAGACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CCA 90 bp | CAGCACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCACTTCTCACCAGGTCTaGGAGTTTCTGAAGCATTCG | + |
|
Preference number: 4 (lower is better) Translates to: QHSGGRGRLISEFEASLVTSHQV*EFLKHS Trigger: CGAATGCTTCAGAAACTCCCAGACCTGGTGAGAAGT...GACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR GCA 90 bp | CACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCTACGGCTTGCCAAAGTCTTaGTATGGTGTTCAAATCGAA | + |
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Preference number: 4 (lower is better) Translates to: HSGGRGRLISEFEASLVYGLPKS*YGVQIE Trigger: TTCGATTTGAACACCATAGCAAGACTTTGGCAAGCC...GTAGACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR GCA 90 bp | CACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCTACGTCTACTCTTTTCATTaGTTCCTTCAAGGATATCAG | + |
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Preference number: 4 (lower is better) Translates to: HSGGRGRLISEFEASLVYVYSFH*FLQGYQ Trigger: CTGATATCCTTGAAGGAAGCAATGAAAAGAGTAGAC...GTAGACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR GCA 90 bp | AGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAACTATCTCATCCTGGGCTaGTTGGCTTGCCAAAGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: RVSSRTARTTQRNPVSKNYLILG*LACQSL Trigger: AAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATA...GTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CCA 90 bp | TTGGTTTTTAAAATACAAATGACCGCCGGGCAGTGGTGGCGCACGCCTTTAATCTCATCCTGGGCTGCTTaGCTTGCCAAAGTCTTGCTA | + |
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Preference number: 4 (lower is better) Translates to: LVFKIQMTAGQWWRTPLISSWAA*LAKVLL Trigger: TAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGA...GATTAAAGGCGTGCGCCACCACTGCCCGGCGGTCATTTGTATTTTAAAAACCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CCA 90 bp | AGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAACACATCCGTCTTACGTTaGCAGCATAGTGCTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: RVSSRTARTTQRNPVSKNTSVLR*QHSALL Trigger: AAGGAGAGCACTATGCTGCCAACGTAAGACGGATGT...GTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR TCA 90 bp | TTGGTTTTTAAAATACAAATGACCGCCGGGCAGTGGTGGCGCACGCCTTTAATCAATATTCAGTTCCATTaGGGTGAACCCAAGGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: LVFKIQMTAGQWWRTPLINIQFH*GEPKGQ Trigger: CTGGCCCTTGGGTTCACCTCAATGGAACTGAATATT...GATTAAAGGCGTGCGCCACCACTGCCCGGCGGTCATTTGTATTTTAAAAACCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR TCA 90 bp | AGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAACTGTTGCCATGTACAATaGAGAAGGTACAGAGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: RVSSRTARTTQRNPVSKNCCHVQ*RRYRVL Trigger: CAGCACTCTGTACCTTCTTCATTGTACATGGCAACA...GTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR GCA 90 bp | TTGGTTTTTAAAATACAAATGACCGCCGGGCAGTGGTGGCGCACGCCTTTAATCGTTTTCAGGGTCCTGTaGTTGTTTCCCCTTCTCGAT | + |
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Preference number: 4 (lower is better) Translates to: LVFKIQMTAGQWWRTPLIVFRVL*LFPLLD Trigger: ATCGAGAAGGGGAAACAAGCACAGGACCCTGAAAAC...GATTAAAGGCGTGCGCCACCACTGCCCGGCGGTCATTTGTATTTTAAAAACCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR TCA 90 bp | TTTATTATGTATTTGGTGGTATCAGGGATTGAACTCAGGGCCTCATACATACAATCAGTTCCATTGAGGTaGACCCAAGGGCCAGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: FIMYLVVSGIELRASYIQSVPLR*TQGPEL Trigger: CAGCTCTGGCCCTTGGGTTCACCTCAATGGAACTGA...TTGTATGTATGAGGCCCTGAGTTCAATCCCTGATACCACCAAATACATAATAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CCA 90 bp | TTTATTATGTATTTGGTGGTATCAGGGATTGAACTCAGGGCCTCATACATACAACCATCCTGTAGAGCCTaGTTCTTTACCATGTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: FIMYLVVSGIELRASYIQPSCRA*FFTMLV Trigger: CACCAACATGGTAAAGAACCAGGCTCTACAGGATGG...TTGTATGTATGAGGCCCTGAGTTCAATCCCTGATACCACCAAATACATAATAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CAA 90 bp | CAGCACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCCCTGGGCTGCTTGGCTaGCCAAAGTCTTGCTATGGT | + |
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Preference number: 5 (lower is better) Translates to: QHSGGRGRLISEFEASLVPGLLG*PKSCYG Trigger: ACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGG...GACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CAA 90 bp | CACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCTACCTCATCCTGGGCTGCTaGGCTTGCCAAAGTCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: HSGGRGRLISEFEASLVYLILGC*ACQSLA Trigger: AGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAG...GTAGACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CAA 90 bp | TCCCAGCACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGTTCAGGGTCCTGTGCTaGTTTCCCCTTCTCGATGAT | + |
|
Preference number: 5 (lower is better) Translates to: SQHSGGRGRLISEFEASLFRVLC*FPLLDD Trigger: ATCATCGAGAAGGGGAAACAAGCACAGGACCCTGAA...CAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTGCTGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CAA 90 bp | TCCCAGCACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTGACGTCCAGTTCTTaGAACTGTGTGTCTAGAGCT | + |
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Preference number: 5 (lower is better) Translates to: SQHSGGRGRLISEFEASLVTSSS*NCVSRA Trigger: AGCTCTAGACACACAGTTCAAAGAACTGGACGTCAC...CAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTGCTGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS GCA 90 bp | AAGGTACAGAGTGCTGAGACATCCCTCTCCTGCAGCCCGTACTCCTaGAGGACAGACTCCCACACAAGCCTAACATGCTTGTTCTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: KVQSAETSLSCSPYS*RTDSHTSLTCLFLA Trigger: AGCCAAGAACAAGCATGTTAGGCTTGTGTGGGAGTCTGTCCTGCAGGAGTACGGGCTGCAGGAGAGGGATGTCTCAGCACTCTGTACCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CAA 90 bp | CAGCACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCAGAGCTCTGAGCTTGTaGTCTACTCTTTTCATTGCT | + |
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Preference number: 5 (lower is better) Translates to: QHSGGRGRLISEFEASLVRALSL*STLFIA Trigger: AGCAATGAAAAGAGTAGACAACAAGCTCAGAGCTCT...GACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS GCA 90 bp | GGTGAACCCAAGGGCCAGAGCTGCTGTCCATATCTCATCCTGGGCTaGTTGGCTTGCCAAAGTCTTGCTATGGTGTTCAAATCGAAGCGT | + |
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Preference number: 5 (lower is better) Translates to: GEPKGQSCCPYLILG*LACQSLAMVFKSKR Trigger: ACGCTTCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGACAGCAGCTCTGGCCCTTGGGTTCACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS GCA 90 bp | TGCAGCCCGTACTCCTGCAGGACAGACTCCCACACAAGCCTAACATaGTTGTTCTTGGCTTTTCTTCTAAGGACAGAGGCTAAGGTCGGG | + |
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Preference number: 5 (lower is better) Translates to: CSPYSCRTDSHTSLT*LFLAFLLRTEAKVG Trigger: CCCGACCTTAGCCTCTGTCCTTAGAAGAAAAGCCAAGAACAAGCATGTTAGGCTTGTGTGGGAGTCTGTCCTGCAGGAGTACGGGCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CAA 90 bp | CAGCACTCGGGAGGCAGAGGCAGGCTGATTTCTGAGTTCGAGGCCAGCCTGGTCTGGTTCTTTACCATGTaGGTGATCATGAAGGAAACA | + |
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Preference number: 5 (lower is better) Translates to: QHSGGRGRLISEFEASLVWFFTM*VIMKET Trigger: TGTTTCCTTCATGATCACCAACATGGTAAAGAACCA...GACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCGAGTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CCA 90 bp | AACCCAAGGGCCAGAGCTGCTGTCCATATCTCATCCTGGGCTGCTTaGCTTGCCAAAGTCTTGCTATGGTGTTCAAATCGAAGCGTCAGA | + |
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Preference number: 5 (lower is better) Translates to: NPRARAAVHISSWAA*LAKVLLWCSNRSVR Trigger: TCTGACGCTTCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGACAGCAGCTCTGGCCCTTGGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CCA 90 bp | ATTGAGGTGAACCCAAGGGCCAGAGCTGCTGTCCATATCTCATCCTaGGCTGCTTGGCTTGCCAAAGTCTTGCTATGGTGTTCAAATCGA | + |
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Preference number: 5 (lower is better) Translates to: IEVNPRARAAVHISS*AAWLAKVLLWCSNR Trigger: TCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGACAGCAGCTCTGGCCCTTGGGTTCACCTCAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS GCA 90 bp | AAGGGCCAGAGCTGCTGTCCATATCTCATCCTGGGCTGCTTGGCTTaGCAAAGTCTTGCTATGGTGTTCAAATCGAAGCGTCAGATTATC | + |
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Preference number: 5 (lower is better) Translates to: KGQSCCPYLILGCLA*QSLAMVFKSKRQII Trigger: GATAATCTGACGCTTCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGACAGCAGCTCTGGCCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CCA 90 bp | GTCCATATCTCATCCTGGGCTGCTTGGCTTGCCAAAGTCTTGCTATaGTGTTCAAATCGAAGCGTCAGATTATCCTTGGTGACGTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: VHISSWAAWLAKVLL*CSNRSVRLSLVTSS Trigger: ACTGGACGTCACCAAGGATAATCTGACGCTTCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS TCA 90 bp | CTTGAGTTTTCAGGGTCCTGTGCTTGTTTCCCCTTCTCGATGATCTaGACAGCTCTAAGCAATCCATCCTGTAGAGCCTGGTTCTTTACC | + |
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Preference number: 5 (lower is better) Translates to: LEFSGSCACFPFSMI*TALSNPSCRAWFFT Trigger: GGTAAAGAACCAGGCTCTACAGGATGGATTGCTTAGAGCTGTTCAGATCATCGAGAAGGGGAAACAAGCACAGGACCCTGAAAACTCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS TCA 90 bp | AATAAGGACCTCGATGACATAGCTGTATACAATATTCAGTTCCATTaGGGTGAACCCAAGGGCCAGAGCTGCTGTCCATATCTCATCCTG | + |
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Preference number: 5 (lower is better) Translates to: NKDLDDIAVYNIQFH*GEPKGQSCCPYLIL Trigger: CAGGATGAGATATGGACAGCAGCTCTGGCCCTTGGGTTCACCTCAATGGAACTGAATATTGTATACAGCTATGTCATCGAGGTCCTTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CAA 90 bp | AGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAACACAAGCCTAACATGCTaGTTCTTGGCTTTTCTTCTA | + |
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Preference number: 5 (lower is better) Translates to: RVSSRTARTTQRNPVSKNTSLTC*FLAFLL Trigger: TAGAAGAAAAGCCAAGAACAAGCATGTTAGGCTTGT...GTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CAA 90 bp | AGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAACTGTCTACTCTTTTCATaGCTTCCTTCAAGGATATCA | + |
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Preference number: 5 (lower is better) Translates to: RVSSRTARTTQRNPVSKNCLLFS*LPSRIS Trigger: TGATATCCTTGAAGGAAGCAATGAAAAGAGTAGACA...GTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CAA 90 bp | TTTATTATGTATTTGGTGGTATCAGGGATTGAACTCAGGGCCTCATACATACAATGGCTTGCCAAAGTCTaGCTATGGTGTTCAAATCGA | + |
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Preference number: 5 (lower is better) Translates to: FIMYLVVSGIELRASYIQWLAKV*LWCSNR Trigger: TCGATTTGAACACCATAGCAAGACTTTGGCAAGCCA...TTGTATGTATGAGGCCCTGAGTTCAATCCCTGATACCACCAAATACATAATAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS-3UTR CAA 90 bp | TTTATTATGTATTTGGTGGTATCAGGGATTGAACTCAGGGCCTCATACATACAACTAACATGCTTGTTCTaGGCTTTTCTTCTAAGGACA | + |
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Preference number: 5 (lower is better) Translates to: FIMYLVVSGIELRASYIQLTCLF*AFLLRT Trigger: TGTCCTTAGAAGAAAAGCCAAGAACAAGCATGTTAG...TTGTATGTATGAGGCCCTGAGTTCAATCCCTGATACCACCAAATACATAATAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS GCA 72 bp | AGTGCTGAGACATCCCTCTCCTGCAGCCCGTACTCCTaGAGGACAGACTCCCACACAAGCCTAACATGCTTG | + |
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Preference number: 6 (lower is better) Translates to: SAETSLSCSPYS*RTDSHTSLTCL Trigger: CAAGCATGTTAGGCTTGTGTGGGAGTCTGTCCTGCAGGAGTACGGGCTGCAGGAGAGGGATGTCTCAGCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CCA 72 bp | AACCCAAGGGCCAGAGCTGCTGTCCATATCTCATCCTaGGCTGCTTGGCTTGCCAAAGTCTTGCTATGGTGT | + |
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Preference number: 6 (lower is better) Translates to: NPRARAAVHISS*AAWLAKVLLWC Trigger: ACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGACAGCAGCTCTGGCCCTTGGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CAA 90 bp | AGCCCGTACTCCTGCAGGACAGACTCCCACACAAGCCTAACATGCTaGTTCTTGGCTTTTCTTCTAAGGACAGAGGCTAAGGTCGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: SPYSCRTDSHTSLTC*FLAFLLRTEAKVGR Trigger: TCTCCCGACCTTAGCCTCTGTCCTTAGAAGAAAAGCCAAGAACAAGCATGTTAGGCTTGTGTGGGAGTCTGTCCTGCAGGAGTACGGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS TCA 72 bp | AAGGTCGGGAGACTTCTCACCAGGTCTGGGAGTTTCTaGAGCATTCGAGTGTGCAAGCAAATAAGGACCTCG | + |
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Preference number: 6 (lower is better) Translates to: KVGRLLTRSGSF*SIRVCKQIRTS Trigger: CGAGGTCCTTATTTGCTTGCACACTCGAATGCTTCAGAAACTCCCAGACCTGGTGAGAAGTCTCCCGACCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS TCA 72 bp | TCAGGGTCCTGTGCTTGTTTCCCCTTCTCGATGATCTaGACAGCTCTAAGCAATCCATCCTGTAGAGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: SGSCACFPFSMI*TALSNPSCRAW Trigger: CCAGGCTCTACAGGATGGATTGCTTAGAGCTGTTCAGATCATCGAGAAGGGGAAACAAGCACAGGACCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS GCA 72 bp | AAGGGCCAGAGCTGCTGTCCATATCTCATCCTGGGCTaGTTGGCTTGCCAAAGTCTTGCTATGGTGTTCAAA | + |
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Preference number: 6 (lower is better) Translates to: KGQSCCPYLILG*LACQSLAMVFK Trigger: TTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGACAGCAGCTCTGGCCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CCA 72 bp | GCCAGAGCTGCTGTCCATATCTCATCCTGGGCTGCTTaGCTTGCCAAAGTCTTGCTATGGTGTTCAAATCGA | + |
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Preference number: 6 (lower is better) Translates to: ARAAVHISSWAA*LAKVLLWCSNR Trigger: TCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGACAGCAGCTCTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CAA 72 bp | GAGCTGCTGTCCATATCTCATCCTGGGCTGCTTGGCTaGCCAAAGTCTTGCTATGGTGTTCAAATCGAAGCG | + |
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Preference number: 6 (lower is better) Translates to: ELLSISHPGLLG*PKSCYGVQIEA Trigger: CGCTTCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGACAGCAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CAA 90 bp | GCTGCTGTCCATATCTCATCCTGGGCTGCTTGGCTTGCCAAAGTCTaGCTATGGTGTTCAAATCGAAGCGTCAGATTATCCTTGGTGACG | + |
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Preference number: 6 (lower is better) Translates to: AAVHISSWAAWLAKV*LWCSNRSVRLSLVT Trigger: CGTCACCAAGGATAATCTGACGCTTCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGACAGCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CAA 90 bp | CAAGGGCCAGAGCTGCTGTCCATATCTCATCCTGGGCTGCTTGGCTaGCCAAAGTCTTGCTATGGTGTTCAAATCGAAGCGTCAGATTAT | + |
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Preference number: 6 (lower is better) Translates to: QGPELLSISHPGLLG*PKSCYGVQIEASDY Trigger: ATAATCTGACGCTTCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGACAGCAGCTCTGGCCCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS GCA 72 bp | AGCTGCTGTCCATATCTCATCCTGGGCTGCTTGGCTTaGCAAAGTCTTGCTATGGTGTTCAAATCGAAGCGT | + |
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Preference number: 6 (lower is better) Translates to: SCCPYLILGCLA*QSLAMVFKSKR Trigger: ACGCTTCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATGGACAGCAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS GCA 72 bp | TACTCCTGCAGGACAGACTCCCACACAAGCCTAACATaGTTGTTCTTGGCTTTTCTTCTAAGGACAGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: YSCRTDSHTSLT*LFLAFLLRTEA Trigger: AGCCTCTGTCCTTAGAAGAAAAGCCAAGAACAAGCATGTTAGGCTTGTGTGGGAGTCTGTCCTGCAGGAGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CCA 72 bp | TCATCCTGGGCTGCTTGGCTTGCCAAAGTCTTGCTATaGTGTTCAAATCGAAGCGTCAGATTATCCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: SSWAAWLAKVLL*CSNRSVRLSLV Trigger: CACCAAGGATAATCTGACGCTTCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CAA 90 bp | GCCAAAGTCTTGCTATGGTGTTCAAATCGAAGCGTCAGATTATCCTaGGTGACGTCCAGTTCTTTGAACTGTGTGTCTAGAGCTCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: AKVLLWCSNRSVRLS*VTSSSLNCVSRALS Trigger: GCTCAGAGCTCTAGACACACAGTTCAAAGAACTGGACGTCACCAAGGATAATCTGACGCTTCGATTTGAACACCATAGCAAGACTTTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CAA 72 bp | CGAAGCGTCAGATTATCCTTGGTGACGTCCAGTTCTTaGAACTGTGTGTCTAGAGCTCTGAGCTTGTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: RSVRLSLVTSSS*NCVSRALSLLS Trigger: AGACAACAAGCTCAGAGCTCTAGACACACAGTTCAAAGAACTGGACGTCACCAAGGATAATCTGACGCTTCG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CAA 72 bp | CATATCTCATCCTGGGCTGCTTGGCTTGCCAAAGTCTaGCTATGGTGTTCAAATCGAAGCGTCAGATTATCC | + |
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Preference number: 6 (lower is better) Translates to: HISSWAAWLAKV*LWCSNRSVRLS Trigger: GGATAATCTGACGCTTCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS TCA 72 bp | CTCGATGACATAGCTGTATACAATATTCAGTTCCATTaGGGTGAACCCAAGGGCCAGAGCTGCTGTCCATAT | + |
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Preference number: 6 (lower is better) Translates to: LDDIAVYNIQFH*GEPKGQSCCPY Trigger: ATATGGACAGCAGCTCTGGCCCTTGGGTTCACCTCAATGGAACTGAATATTGTATACAGCTATGTCATCGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS GCA 72 bp | ATATCTCATCCTGGGCTGCTTGGCTTGCCAAAGTCTTaGTATGGTGTTCAAATCGAAGCGTCAGATTATCCT | + |
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Preference number: 6 (lower is better) Translates to: ISHPGLLGLPKS*YGVQIEASDYP Trigger: AGGATAATCTGACGCTTCGATTTGAACACCATAGCAAGACTTTGGCAAGCCAAGCAGCCCAGGATGAGATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CAA 90 bp | ACAGCTCTAAGCAATCCATCCTGTAGAGCCTGGTTCTTTACCATGTaGGTGATCATGAAGGAAACATCTTTGATGTACATCCGTCTTACG | + |
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Preference number: 6 (lower is better) Translates to: TALSNPSCRAWFFTM*VIMKETSLMYIRLT Trigger: CGTAAGACGGATGTACATCAAAGATGTTTCCTTCATGATCACCAACATGGTAAAGAACCAGGCTCTACAGGATGGATTGCTTAGAGCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CAA 72 bp | TTGCTATGGTGTTCAAATCGAAGCGTCAGATTATCCTaGGTGACGTCCAGTTCTTTGAACTGTGTGTCTAGA | + |
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Preference number: 6 (lower is better) Translates to: LLWCSNRSVRLS*VTSSSLNCVSR Trigger: TCTAGACACACAGTTCAAAGAACTGGACGTCACCAAGGATAATCTGACGCTTCGATTTGAACACCATAGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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| CDS CAA 72 bp | AGCAATCCATCCTGTAGAGCCTGGTTCTTTACCATGTaGGTGATCATGAAGGAAACATCTTTGATGTACATC | + |
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Preference number: 6 (lower is better) Translates to: SNPSCRAWFFTM*VIMKETSLMYI Trigger: GATGTACATCAAAGATGTTTCCTTCATGATCACCAACATGGTAAAGAACCAGGCTCTACAGGATGGATTGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093183.5 |
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