RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMCHD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024054

Ensembl transcript IDs: ENSMUST00000127430.2, ENSMUST00000233839.2, ENSMUST00000233872.2

Found 240 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTCTaGAAGTTGAATAGCTTCAATGGCTTCCAGGCCCATTTGGAGGAA +
Preference number: 1 (lower is better)
Translates to: TTAMTPGNLCCPMRF*KLNSFNGFQAHLEE
Trigger: TTCCTCCAAATGGGCCTGGAAGCCATTGAAGCTATTCAACTTTCAGAATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
3UTR TCA 90 bp CTCATGAACATCCTTGGAGTCGATAGGCTTGCTTATCATTCTGGCTaGTTGCCCAACAAAGAAAACAGCCTGTTTGCCTCCAACACCAAA +
Preference number: 1 (lower is better)
Translates to: LMNILGVDRLAYHSG*LPNKENSLFASNTK
Trigger: TTTGGTGTTGGAGGCAAACAGGCTGTTTTCTTTGTTGGGCAATCAGCCAGAATGATAAGCAAGCCTATCGACTCCAAGGATGTTCATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233872.2
3UTR-3UTR TCA 90 bp TCTAATATGTTCATGATTATGCTGAGGAGCAGGAAGTTGTCTTCAGGGCAGGAAGTCCCAGGGCTGGGATaGCCACCACTGGGTAAAAGT +
Preference number: 2 (lower is better)
Translates to: SNMFMIMLRSRKLSSGQEVPGLG*PPLGKS
Trigger: ACTTTTACCCAGTGGTGGTCATCCCAGCCCTGGGAC...TTCCTGCCCTGAAGACAACTTCCTGCTCCTCAGCATAATCATGAACATATTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
3UTR-3UTR GCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACGTAAAAGTGTACATTTaGAAGCCAGCCACCGACGGG +
Preference number: 2 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHVKVYI*KPATDG
Trigger: CCCGTCGGTGGCTGGCTTGCAAATGTACACTTTTAC...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
3UTR-3UTR CCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACGCTTCCAGGCCCATTTaGAGGAACAGGAAATTCTTG +
Preference number: 2 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHASRPI*RNRKFL
Trigger: CAAGAATTTCCTGTTCCTCCAAATGGGCCTGGAAGC...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
3UTR-3UTR TCA 90 bp AGGACACAATCTTTAGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACTGCCCCATGAGATTCTaGAAGTTGAATAGCTTCAAT +
Preference number: 2 (lower is better)
Translates to: RTQSLGYPILTNVFVYLNCPMRF*KLNSFN
Trigger: ATTGAAGCTATTCAACTTTCAGAATCTCATGGGGCA...GTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCTAAAGATTGTGTCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
3UTR-3UTR GCA 90 bp CATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCAACTCAGGAACAGGAAATTCTTaGCAGGATTATCATAGTCTT +
Preference number: 2 (lower is better)
Translates to: HILLIYRIQSLGCPITNSGTGNS*QDYHSL
Trigger: AAGACTATGATAATCCTGGCAAGAATTTCCTGTTCC...TGAGTTGGTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
3UTR GCA 72 bp GGCTGGGATGACCACCACTGGGTAAAAGTGTACATTTaGAAGCCAGCCACCGACGGGCCCAACGACTGCAAT +
Preference number: 3 (lower is better)
Translates to: GWDDHHWVKVYI*KPATDGPNDCN
Trigger: ATTGCAGTCGTTGGGCCCGTCGGTGGCTGGCTTGCAAATGTACACTTTTACCCAGTGGTGGTCATCCCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
3UTR TCA 72 bp GTTGTCTTCAGGGCAGGAAACGTCCCAGGGCTGGGATaGCCACCACTGGGTAAAAGTGTACATTTGCAAGCC +
Preference number: 3 (lower is better)
Translates to: VVFRAGNVPGLG*PPLGKSVHLQA
Trigger: GGCTTGCAAATGTACACTTTTACCCAGTGGTGGTCATCCCAGCCCTGGGACGTTTCCTGCCCTGAAGACAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
3UTR-3UTR CAA 90 bp TCTAATATGTTCATGATTATGCTGAGGAGCAGGAAGTTGTCTTCAGGGCAGGAAGGTAAAAGTGTACATTaGCAAGCCAGCCACCGACGG +
Preference number: 3 (lower is better)
Translates to: SNMFMIMLRSRKLSSGQEGKSVH*QASHRR
Trigger: CCGTCGGTGGCTGGCTTGCAAATGTACACTTTTACC...TTCCTGCCCTGAAGACAACTTCCTGCTCCTCAGCATAATCATGAACATATTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
3UTR TCA 72 bp ATCCTTGGAGTCGATAGGCTTGCTTATCATTCTGGCTaGTTGCCCAACAAAGAAAACAGCCTGTTTGCCTCC +
Preference number: 3 (lower is better)
Translates to: ILGVDRLAYHSG*LPNKENSLFAS
Trigger: GGAGGCAAACAGGCTGTTTTCTTTGTTGGGCAATCAGCCAGAATGATAAGCAAGCCTATCGACTCCAAGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233872.2
3UTR GCA 72 bp CAATCTTTGGTGAGTGACAAAGTGACTCATTACACCTaGGCACAGGAGTCATTCCGAGTTTCTGCTCTATTC +
Preference number: 3 (lower is better)
Translates to: QSLVSDKVTHYT*AQESFRVSALF
Trigger: GAATAGAGCAGAAACTCGGAATGACTCCTGTGCGCAGGTGTAATGAGTCACTTTGTCACTCACCAAAGATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233839.2
3UTR-3UTR CAA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTGGCTTCCAGGCCCATTaGGAGGAACAGGAAATTCTT +
Preference number: 3 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSGFQAH*EEQEIL
Trigger: AAGAATTTCCTGTTCCTCCAAATGGGCCTGGAAGCC...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTGGTTCCATGGCAATCTaGACTTCACCTCCCGTCGCA +
Preference number: 4 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEIGSMAI*TSPPVA
Trigger: TGCGACGGGAGGTGAAGTTCAGATTGCCATGGAACC...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTGTGCCTGGGGTTCCATaGCAATCTGAACTTCACCTC +
Preference number: 4 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEIVPGVP*QSELHL
Trigger: GAGGTGAAGTTCAGATTGCCATGGAACCCCAGGCAC...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTCTCCTTCGTAAGCGCTaGCATTTGTTGCTGCTTCTT +
Preference number: 4 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEILLRKR*HLLLLL
Trigger: AAGAAGCAGCAACAAATGGCAGCGCTTACGAAGGAG...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTGCCCAGTTGTTAAGCTaGTTAGAGGTCATTCCTCTT +
Preference number: 4 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEIAQLLS*LEVIPL
Trigger: AAGAGGAATGACCTCTAAGCAGCTTAACAACTGGGC...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTAAAGCCTTTAATGGTTaGTACTACAGTGCCAACCAG +
Preference number: 4 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEIKAFNG*YYSANQ
Trigger: CTGGTTGGCACTGTAGTAGCAACCATTAAAGGCTTT...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTGCCTTCTATTCTGTCTaGTGGATTCTCTTCTCATTC +
Preference number: 4 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEIAFYSV*WILFSF
Trigger: GAATGAGAAGAGAATCCACCAGACAGAATAGAAGGC...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp AGCTTCAATGGCTTCCAGGCCCATTTGGAGGAACAGGAAATTCTTGCCAGGATTTTCTTTGACCCTCCATaGCTTGTCCCTGGGAGTTTC +
Preference number: 4 (lower is better)
Translates to: SFNGFQAHLEEQEILARIFFDPP*LVPGSF
Trigger: GAAACTCCCAGGGACAAGTCATGGAGGGTCAAAGAA...AATCCTGGCAAGAATTTCCTGTTCCTCCAAATGGGCCTGGAAGCCATTGAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCTGGTGGCCGGCTCATaGCACTGGACAGCTTCCACA +
Preference number: 4 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHLVAGS*HWTAST
Trigger: TGTGGAAGCTGTCCAGTGGCATGAGCCGGCCACCAG...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp AGCTTCAATGGCTTCCAGGCCCATTTGGAGGAACAGGAAATTCTTGCCAGGATTACAACTATTTCTCCTTaGAGCTCTTGGCCCATCTGC +
Preference number: 4 (lower is better)
Translates to: SFNGFQAHLEEQEILARITTISP*SSWPIC
Trigger: GCAGATGGGCCAAGAGCTTCAAGGAGAAATAGTTGT...AATCCTGGCAAGAATTTCCTGTTCCTCCAAATGGGCCTGGAAGCCATTGAAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp AGCTTCAATGGCTTCCAGGCCCATTTGGAGGAACAGGAAATTCTTGCCAGGATTGGTGATTTTCAAGTTTaGGCTGTCAAGGCCATCTCC +
Preference number: 4 (lower is better)
Translates to: SFNGFQAHLEEQEILARIGDFQV*AVKAIS
Trigger: GGAGATGGCCTTGACAGCTCAAACTTGAAAATCACC...AATCCTGGCAAGAATTTCCTGTTCCTCCAAATGGGCCTGGAAGCCATTGAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp TTATCATTCTGGCTGATTGCCCAACAAAGAAAACAGCCTGTTTGCCTCCAACACTGGCCGGACATACCCTaGGTGATCAGCAAAGGATTC +
Preference number: 4 (lower is better)
Translates to: LSFWLIAQQRKQPVCLQHWPDIP*VISKGF
Trigger: GAATCCTTTGCTGATCACTCAGGGTATGTCCGGCCA...GTGTTGGAGGCAAACAGGCTGTTTTCTTTGTTGGGCAATCAGCCAGAATGATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233872.2
CDS-3UTR TCA 90 bp TTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATTCACCAGCAGCTTCTTTaGCCCTCCATGACTTGTCCC +
Preference number: 4 (lower is better)
Translates to: LGCPITNSYRTQSLGYPIHQQLL*PSMTCP
Trigger: GGGACAAGTCATGGAGGGTCAAAGAAGCTGCTGGTG...AATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp AGCTTCAATGGCTTCCAGGCCCATTTGGAGGAACAGGAAATTCTTGCCAGGATTAGTTGGCCTCCAAGGTaGTTTTCAAGTTTGAGCTGT +
Preference number: 4 (lower is better)
Translates to: SFNGFQAHLEEQEILARISWPPR*FSSLSC
Trigger: ACAGCTCAAACTTGAAAATCACCTTGGAGGCCAACT...AATCCTGGCAAGAATTTCCTGTTCCTCCAAATGGGCCTGGAAGCCATTGAAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCCCAAGACCACACACTaGTTTGGTACTGGAGCTCCG +
Preference number: 4 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHPKTTH*FGTGAP
Trigger: CGGAGCTCCAGTACCAAAGCAGTGTGTGGTCTTGGG...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp AGCTTCAATGGCTTCCAGGCCCATTTGGAGGAACAGGAAATTCTTGCCAGGATTGTGGACGATCAGCTTTaGTTGTGCTGTTATGTTGTC +
Preference number: 4 (lower is better)
Translates to: SFNGFQAHLEEQEILARIVDDQL*LCCYVV
Trigger: GACAACATAACAGCACAACCAAAGCTGATCGTCCAC...AATCCTGGCAAGAATTTCCTGTTCCTCCAAATGGGCCTGGAAGCCATTGAAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACTTCTGCATTTGCTGGTaGCCGGCTCATGCCACTGGA +
Preference number: 4 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHFCICW*PAHATG
Trigger: TCCAGTGGCATGAGCCGGCCACCAGCAAATGCAGAA...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATTGCCGGCTCATGCCACTaGACAGCTTCCACATTTTCA +
Preference number: 4 (lower is better)
Translates to: LGCPITNSYRTQSLGYPIAGSCH*TASTFS
Trigger: TGAAAATGTGGAAGCTGTCCAGTGGCATGAGCCGGC...AATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp AGCTTCAATGGCTTCCAGGCCCATTTGGAGGAACAGGAAATTCTTGCCAGGATTTTAAAATTCTTGCCCTaGCAAGAGTTAACTGGACCT +
Preference number: 4 (lower is better)
Translates to: SFNGFQAHLEEQEILARILKFLP*QELTGP
Trigger: AGGTCCAGTTAACTCTTGCCAGGGCAAGAATTTTAA...AATCCTGGCAAGAATTTCCTGTTCCTCCAAATGGGCCTGGAAGCCATTGAAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TTTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATACACTGCTTTGGTACTaGAGCTCCGAAGACCATTCC +
Preference number: 4 (lower is better)
Translates to: FRLSYHQLIQDTIFRLSYTLLWY*SSEDHS
Trigger: GGAATGGTCTTCGGAGCTCCAGTACCAAAGCAGTGT...ATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCGGACATACCCTGAGTaGTCACTTTCAAAGTCACCT +
Preference number: 4 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHRTYPE*SLSKSP
Trigger: AGGTGACTTTGAAAGTGATCACTCAGGGTATGTCCG...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp TCTAATATGTTCATGATTATGCTGAGGAGCAGGAAGTTGTCTTCAGGGCAGGAACGTCTTTTCAACAGGTaGCACATCTTTACAGCTAGG +
Preference number: 4 (lower is better)
Translates to: SNMFMIMLRSRKLSSGQERLFNR*HIFTAR
Trigger: CCTAGCTGTAAAGATGTGTCACCTGTTGAAAAGACG...TTCCTGCCCTGAAGACAACTTCCTGCTCCTCAGCATAATCATGAACATATTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TCTAATATGTTCATGATTATGCTGAGGAGCAGGAAGTTGTCTTCAGGGCAGGAAAGCTCTTGGCCCATCTaGACTGTTTTTCCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: SNMFMIMLRSRKLSSGQESSWPI*TVFPPF
Trigger: AAAAGGAGGAAAAACAGTGCAGATGGGCCAAGAGCT...TTCCTGCCCTGAAGACAACTTCCTGCTCCTCAGCATAATCATGAACATATTAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TCTAATATGTTCATGATTATGCTGAGGAGCAGGAAGTTGTCTTCAGGGCAGGAACTCTGCAAGAGCAAATaGCAAAGGATTCTGTCCTTC +
Preference number: 4 (lower is better)
Translates to: SNMFMIMLRSRKLSSGQELCKSK*QRILSF
Trigger: GAAGGACAGAATCCTTTGCCATTTGCTCTTGCAGAG...TTCCTGCCCTGAAGACAACTTCCTGCTCCTCAGCATAATCATGAACATATTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp AGGACACAATCTTTAGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACGGACTCTTTCAGCTCTaGCCAGTCCATAAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: RTQSLGYPILTNVFVYLNGLFQL*PVHKQQ
Trigger: CTGCTGCTTATGGACTGGCCAGAGCTGAAAGAGTCC...GTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCTAAAGATTGTGTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCCACAAGCTGCTTGTTaGCATCGAAGAGACTTCTGT +
Preference number: 4 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHPQAAC*HRRDFC
Trigger: ACAGAAGTCTCTTCGATGCCAACAAGCAGCTTGTGG...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp GTGGATTCTCTTCTCATTCTTTTAGTAGGGATTGGGCACTCTGTCACCTCAATCATCTCGGGCAAAGACTaGATTTCCAAAGGGCTTAAA +
Preference number: 4 (lower is better)
Translates to: VDSLLILLVGIGHSVTSIISGKD*ISKGLK
Trigger: TTTAAGCCCTTTGGAAATCCAGTCTTTGCCCGAGAT...GATTGAGGTGACAGAGTGCCCAATCCCTACTAAAAGAATGAGAAGAGAATCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233839.2
CDS-3UTR CCA 90 bp TCTAATATGTTCATGATTATGCTGAGGAGCAGGAAGTTGTCTTCAGGGCAGGAACCGAAGTTTGTCCATTaGCGGAGCTTTATTCTGAAG +
Preference number: 4 (lower is better)
Translates to: SNMFMIMLRSRKLSSGQEPKFVH*RSFILK
Trigger: CTTCAGAATAAAGCTCCGCCAATGGACAAACTTCGG...TTCCTGCCCTGAAGACAACTTCCTGCTCCTCAGCATAATCATGAACATATTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp AGGACACAATCTTTAGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACATCCCATTCTATTGCTaGAAATGTTGCCCAGGGGCC +
Preference number: 4 (lower is better)
Translates to: RTQSLGYPILTNVFVYLNIPFYC*KCCPGA
Trigger: GGCCCCTGGGCAACATTTTCAGCAATAGAATGGGAT...GTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCTAAAGATTGTGTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp GTGGATTCTCTTCTCATTCTTTTAGTAGGGATTGGGCACTCTGTCACCTCAATCGCAGTGCGATACTGCTaGATAAGATCTCTTTTCTAT +
Preference number: 4 (lower is better)
Translates to: VDSLLILLVGIGHSVTSIAVRYC*IRSLFY
Trigger: ATAGAAAAGAGATCTTATTCAGCAGTATCGCACTGC...GATTGAGGTGACAGAGTGCCCAATCCCTACTAAAAGAATGAGAAGAGAATCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233839.2
CDS-3UTR GCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACTCCATTATCTACCACTaGGACAGCAGGTTTTCCTTG +
Preference number: 4 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHSIIYH*DSRFSL
Trigger: CAAGGAAAACCTGCTGTCGCAGTGGTAGATAATGGA...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTGTTGCCCAGGGGCCTTaGTTTTTAGTGGGAAGATCT +
Preference number: 4 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLVAQGP*FLVGRS
Trigger: AGATCTTCCCACTAAAAAGCAAGGCCCCTGGGCAAC...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTGTCCCTGGGAGTTTCTaGATTGCTTCCCCCTTTTTG +
Preference number: 4 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLVPGSF*IASPFL
Trigger: CAAAAAGGGGGAAGCAATGCAGAAACTCCCAGGGAC...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATTTCATATAAGAAGGGATaGTACCGGATAACCCCTTCC +
Preference number: 4 (lower is better)
Translates to: LGCPITNSYRTQSLGYPISYKKG*YRITPS
Trigger: GGAAGGGGTTATCCGGTACCATCCCTTCTTATATGA...AATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTTGCAGGCAAGCAGCGTaGCTACTGGGAAGTAACTTG +
Preference number: 4 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSCRQAA*LLGSNL
Trigger: CAAGTTACTTCCCAGTAGCCACGCTGCTTGCCTGCA...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp AGCTTCAATGGCTTCCAGGCCCATTTGGAGGAACAGGAAATTCTTGCCAGGATTCTTTTCTATAATGATTaGCTGCATCCAGATTATCCA +
Preference number: 4 (lower is better)
Translates to: SFNGFQAHLEEQEILARILFYND*LHPDYP
Trigger: TGGATAATCTGGATGCAGCCAATCATTATAGAAAAG...AATCCTGGCAAGAATTTCCTGTTCCTCCAAATGGGCCTGGAAGCCATTGAAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp CATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCAACTCATCCACAACTTCCACCTaGAATGGGAAAGCTGTTCCA +
Preference number: 4 (lower is better)
Translates to: HILLIYRIQSLGCPITNSSTTST*NGKAVP
Trigger: TGGAACAGCTTTCCCATTTCAGGTGGAAGTTGTGGA...TGAGTTGGTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp TCTAATATGTTCATGATTATGCTGAGGAGCAGGAAGTTGTCTTCAGGGCAGGAAAAAAGTGCTTCAATATaGGTTGTCTGTTGTGTCGCA +
Preference number: 4 (lower is better)
Translates to: SNMFMIMLRSRKLSSGQEKSASI*VVCCVA
Trigger: TGCGACACAACAGACAACTCATATTGAAGCACTTTT...TTCCTGCCCTGAAGACAACTTCCTGCTCCTCAGCATAATCATGAACATATTAGA
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp CATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCAACTCATGTCACTGTTCAAACTaGGTGGTACTGGTAATGGCC +
Preference number: 4 (lower is better)
Translates to: HILLIYRIQSLGCPITNSCHCSN*VVLVMA
Trigger: GGCCATTACCAGTACCACGCAGTTTGAACAGTGACA...TGAGTTGGTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCTTGACCAGTTGGCCTaGTTTGTATATTTTCCCATC +
Preference number: 4 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHLDQLA*FVYFPI
Trigger: GATGGGAAAATATACAAAGCAGGCCAACTGGTCAAG...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTACAACTAAAGGTTTCTaGATTTGCTGGTGGCCGGCT +
Preference number: 4 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLTTKGF*ICWWPA
Trigger: AGCCGGCCACCAGCAAATGCAGAAACCTTTAGTTGT...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TTTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATATCTCGGGCAAAGACTaGATTTCCAAAGGGCTTAAA +
Preference number: 4 (lower is better)
Translates to: FRLSYHQLIQDTIFRLSYISGKD*ISKGLK
Trigger: TTTAAGCCCTTTGGAAATCCAGTCTTTGCCCGAGAT...ATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp AGGACACAATCTTTAGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACCTTCAACGTGAGCCTTaGACTCAAAACTATCAGACG +
Preference number: 4 (lower is better)
Translates to: RTQSLGYPILTNVFVYLNLQREP*TQNYQT
Trigger: CGTCTGATAGTTTTGAGTTCAAGGCTCACGTTGAAG...GTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCTAAAGATTGTGTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp AGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGCCGTCTCCTTCAACGTaGGCCTTGAACTCAAAACTA +
Preference number: 4 (lower is better)
Translates to: RLSYSHQCFCVSEHLNSQPSPST*ALNSKL
Trigger: TAGTTTTGAGTTCAAGGCTCACGTTGAAGGAGACGG...CTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp AGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGCCTCATCCTGATGTTTaGTCTGGATCGCCTTTTGCT +
Preference number: 4 (lower is better)
Translates to: RLSYSHQCFCVSEHLNSQPHPDV*SGSPFA
Trigger: AGCAAAAGGCGATCCAGATCAAACATCAGGATGAGG...CTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTCAAGTAACCTCATCCTaGTGTTTGATCTGGATCGCC +
Preference number: 4 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSQVTSS*CLIWIA
Trigger: GGCGATCCAGATCAAACATCAGGATGAGGTTACTTG...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATTTGTCCTATCCAGCTTTaGAATGGGCACAGTTTTTAT +
Preference number: 4 (lower is better)
Translates to: LGCPITNSYRTQSLGYPICPIQL*NGHSFY
Trigger: ATAAAAACTGTGCCCATTGCAAAGCTGGATAGGACA...AATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACTCTATCAGGGAGCCTTaGCATTTCATCTTCTACATA +
Preference number: 4 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHSIREP*HFIFYI
Trigger: TATGTAGAAGATGAAATGGCAAGGCTCCCTGATAGA...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TTTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATAAACTGGATACAATATaGTCCCACCTTGTTAGGGAT +
Preference number: 4 (lower is better)
Translates to: FRLSYHQLIQDTIFRLSYKLDTI*SHLVRD
Trigger: ATCCCTAACAAGGTGGGAGCATATTGTATCCAGTTT...ATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTATGTCACTTGCCAGATaGCAAGAGATAACCATGGCA +
Preference number: 4 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLMSLAR*QEITMA
Trigger: TGCCATGGTTATCTCTTGGCATCTGGCAAGTGACAT...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp AGGACACAATCTTTAGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACACAGTCCATGTCACTTaGCAGATGCCAAGAGATAAC +
Preference number: 4 (lower is better)
Translates to: RTQSLGYPILTNVFVYLNTVHVT*QMPRDN
Trigger: GTTATCTCTTGGCATCTGGCAAGTGACATGGACTGT...GTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCTAAAGATTGTGTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTTCCATGACTTGTCCCTaGGAGTTTCTGCATTGCTTC +
Preference number: 4 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSSMTCP*EFLHCF
Trigger: GAAGCAATGCAGAAACTCCCAGGGACAAGTCATGGA...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TTTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATCAGAGGAATATTAAATaGAACTCCAACACGGAAAGG +
Preference number: 4 (lower is better)
Translates to: FRLSYHQLIQDTIFRLSYQRNIK*NSNTER
Trigger: CCTTTCCGTGTTGGAGTTCCATTTAATATTCCTCTG...ATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATTGCGTTTAGTGTAGTTTaGAAGAGTACACAACCTTCT +
Preference number: 4 (lower is better)
Translates to: LGCPITNSYRTQSLGYPIAFSVV*KSTQPS
Trigger: AGAAGGTTGTGTACTCTTCCAAACTACACTAAACGC...AATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp CATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCAACTCATGGTACGTCACCTTTTaGCCTTCTATTCTGTCTGGT +
Preference number: 4 (lower is better)
Translates to: HILLIYRIQSLGCPITNSWYVTF*PSILSG
Trigger: ACCAGACAGAATAGAAGGCCAAAAGGTGACGTACCA...TGAGTTGGTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACTTTCTTCAGATGAAATaGCAATTGTCTGACACACAG +
Preference number: 4 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHFLQMK*QLSDTQ
Trigger: CTGTGTGTCAGACAATTGGCATTTCATCTGAAGAAA...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp AGGACACAATCTTTAGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACAGAAAACAGCCTGTTTaGCTCCAACACCAAAATAGG +
Preference number: 4 (lower is better)
Translates to: RTQSLGYPILTNVFVYLNRKQPV*LQHQNR
Trigger: CCTATTTTGGTGTTGGAGGCAAACAGGCTGTTTTCT...GTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCTAAAGATTGTGTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTTATTTCATCATACAGTaGCTGGGGTTCCATGGCAAT +
Preference number: 4 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLYFIIQ*LGFHGN
Trigger: ATTGCCATGGAACCCCAGGCACTGTATGATGAAATA...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TTTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATTTTCCACTTGAAGTGTaGAGTATGACTTTAAGTTCC +
Preference number: 4 (lower is better)
Translates to: FRLSYHQLIQDTIFRLSYFPLEV*SMTLSS
Trigger: GGAACTTAAAGTCATACTGCACACTTCAAGTGGAAA...ATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TCTAATATGTTCATGATTATGCTGAGGAGCAGGAAGTTGTCTTCAGGGCAGGAATCCTGCATAGGTATCTaGATTACTTTCATTCAATAC +
Preference number: 4 (lower is better)
Translates to: SNMFMIMLRSRKLSSGQESCIGI*ITFIQY
Trigger: GTATTGAATGAAAGTAATGCAGATACCTATGCAGGA...TTCCTGCCCTGAAGACAACTTCCTGCTCCTCAGCATAATCATGAACATATTAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACAAGGTCCAATGGCTTTaGCTGTACTTATTTCATTTC +
Preference number: 4 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHKVQWL*LYLFHF
Trigger: GAAATGAAATAAGTACAGCCAAAGCCATTGGACCTT...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACAAACGAAAACTTTTCTaGCTTGCCCTCTTTAACAGA +
Preference number: 4 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHKRKLF*LALFNR
Trigger: TCTGTTAAAGAGGGCAAGCCAGAAAAGTTTTCGTTT...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TCTCTTCTCATTCTTTTAGTAGGGATTGGGCACTCTGTCACCTCAATCTTTGGTCTTTTCTATAATGATTaGCTGCATCCAGATTATCCA +
Preference number: 4 (lower is better)
Translates to: SLLILLVGIGHSVTSIFGLFYND*LHPDYP
Trigger: TGGATAATCTGGATGCAGCCAATCATTATAGAAAAG...ACCAAAGATTGAGGTGACAGAGTGCCCAATCCCTACTAAAAGAATGAGAAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233839.2
CDS-3UTR TCA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTTCATCATTTGTAATGTaGGCAGAATCAGCTGGCTTT +
Preference number: 4 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLSSFVM*AESAGF
Trigger: AAAGCCAGCTGATTCTGCTCACATTACAAATGATGA...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTATCATTCTGGCTGATTaGCCAACAAAGAAAACAGCC +
Preference number: 4 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSIILAD*PTKKTA
Trigger: GGCTGTTTTCTTTGTTGGGCAATCAGCCAGAATGAT...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTAGTGAATATGTCCCCTaGTATAAAAGAGGCATCTTG +
Preference number: 4 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLSEYVP*YKRGIL
Trigger: CAAGATGCCTCTTTTATAGCAGGGGACATATTCACT...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATTTCAACTATAACCTGTTaGCTGCTTAGAATATTTGTC +
Preference number: 4 (lower is better)
Translates to: LGCPITNSYRTQSLGYPISTITC*LLRIFV
Trigger: GACAAATATTCTAAGCAGCCAACAGGTTATAGTTGA...AATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTTCTTTTAGTAGGGATTaGGCACTCTGTCACCTCAAT +
Preference number: 4 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSSFSRD*ALCHLN
Trigger: ATTGAGGTGACAGAGTGCCCAATCCCTACTAAAAGA...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTCAATATCAATATTGTTaGAAGGTCCAATGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLQYQYC*KVQWLW
Trigger: CCAAAGCCATTGGACCTTTCAACAATATTGATATTG...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTCATTTCCCTCCATGCTaGCTGATATGTGAAATGATT +
Preference number: 4 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSHFPPC*LICEMI
Trigger: AATCATTTCACATATCAGTCAGCATGGAGGGAAATG...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp AGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGTCAATCTTTGGTGAGTaGCAAAGTGACTCATTACAC +
Preference number: 4 (lower is better)
Translates to: RLSYSHQCFCVSEHLNSQSIFGE*QSDSLH
Trigger: GTGTAATGAGTCACTTTGTCACTCACCAAAGATTGA...CTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp AGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGTCATCTGTTTTATGCTaGTGGTTTGAAGGTAGTAGC +
Preference number: 4 (lower is better)
Translates to: RLSYSHQCFCVSEHLNSQSSVLC*WFEGSS
Trigger: GCTACTACCTTCAAACCAGCAGCATAAAACAGATGA...CTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp AGGACACAATCTTTAGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACGTGAGCAGAATCAGCTaGCTTTCTGTTTCTAATATA +
Preference number: 4 (lower is better)
Translates to: RTQSLGYPILTNVFVYLNVSRIS*LSVSNI
Trigger: TATATTAGAAACAGAAAGCCAGCTGATTCTGCTCAC...GTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCTAAAGATTGTGTCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp AGGACACAATCTTTAGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACATTGTCTTGACCAGTTaGCCTGCTTTGTATATTTTC +
Preference number: 4 (lower is better)
Translates to: RTQSLGYPILTNVFVYLNIVLTS*PALYIF
Trigger: GAAAATATACAAAGCAGGCCAACTGGTCAAGACAAT...GTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCTAAAGATTGTGTCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp CATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCAACTCACACAATTCGGGCCTTTaGTTATTCCTTCATAATGTA +
Preference number: 4 (lower is better)
Translates to: HILLIYRIQSLGCPITNSHNSGL*LFLHNV
Trigger: TACATTATGAAGGAATAACCAAAGGCCCGAATTGTG...TGAGTTGGTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTATCTTTCACAGATGTTaGTACTTGCACATCAGGAAG +
Preference number: 4 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSIFHRC*YLHIRK
Trigger: CTTCCTGATGTGCAAGTACCAACATCTGTGAAAGAT...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTTCTGTTTTATGCTGCTaGTTTGAAGGTAGTAGCCTT +
Preference number: 4 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSSVLCC*FEGSSL
Trigger: AAGGCTACTACCTTCAAACCAGCAGCATAAAACAGA...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp CATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCAACTCAATCATGAAATCAAACTaGATACAATATGCTCCCACC +
Preference number: 4 (lower is better)
Translates to: HILLIYRIQSLGCPITNSIMKSN*IQYAPT
Trigger: GGTGGGAGCATATTGTATCCAGTTTGATTTCATGAT...TGAGTTGGTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTTTTGCTTCTTCAGCTTaGCATTTCATTTCATCCACA +
Preference number: 4 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLFASSA*HFISST
Trigger: TGTGGATGAAATGAAATGCCAAGCTGAAGAAGCAAA...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR TCA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTTTGTCATGCTTTTCATaGCAATCCTTCAGCCATAAA +
Preference number: 4 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSLSCFS*QSFSHK
Trigger: TTTATGGCTGAAGGATTGTCATGAAAAGCATGACAA...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR GCA 90 bp CATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCAACTCATTATCATCTGTTTTATaGTGCTGGTTTGAAGGTAGT +
Preference number: 4 (lower is better)
Translates to: HILLIYRIQSLGCPITNSLSSVL*CWFEGS
Trigger: ACTACCTTCAAACCAGCAGCATAAAACAGATGATAA...TGAGTTGGTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CCA 90 bp AGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGTATCCAGCTTTGCAATaGGCACAGTTTTTATTTCAT +
Preference number: 4 (lower is better)
Translates to: RLSYSHQCFCVSEHLNSQYPALQ*AQFLFH
Trigger: ATGAAATAAAAACTGTGCCCATTGCAAAGCTGGATA...CTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTATCAAGGGGCAACACTaGCTGGCGACCTTGAGTTTC +
Preference number: 5 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEIIKGQH*LATLSF
Trigger: GAAACTCAAGGTCGCCAGCAAGTGTTGCCCCTTGAT...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTAGACCACACACTGCTTaGGTACTGGAGCTCCGAAGA +
Preference number: 5 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEIRPHTA*VLELRR
Trigger: TCTTCGGAGCTCCAGTACCAAAGCAGTGTGTGGTCT...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 90 bp TGTGATACTGAGGCGCAGGTCTTTGACCAAGGTCCTGCTGGCAATTaGACGGACATTAGAAACAGCTGGGGTAGCTGGTTGGCTGTCAGG +
Preference number: 5 (lower is better)
Translates to: CDTEAQVFDQGPAGN*TDIRNSWGSWLAVR
Trigger: CCTGACAGCCAACCAGCTACCCCAGCTGTTTCTAATGTCCGTTCAATTGCCAGCAGGACCTTGGTCAAAGACCTGCGCCTCAGTATCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTCTATTGCTGAAAATGTaGCCCAGGGGCCTTGCTTTT +
Preference number: 5 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEILLLKM*PRGLAF
Trigger: AAAAGCAAGGCCCCTGGGCAACATTTTCAGCAATAG...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTCCCGAAGTTTGTCCATaGGCGGAGCTTTATTCTGAA +
Preference number: 5 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEIPEVCP*AELYSE
Trigger: TTCAGAATAAAGCTCCGCCAATGGACAAACTTCGGG...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 90 bp GGCCAGTCCATAAGCAGCAGCTTGGTTGGAGGTCCAGAAACCAGTTaGACGCGCAGAAAGTCAGAAAACTCTCGCCAAGTAAAACACAGA +
Preference number: 5 (lower is better)
Translates to: GQSISSSLVGGPETS*TRRKSENSRQVKHR
Trigger: TCTGTGTTTTACTTGGCGAGAGTTTTCTGACTTTCTGCGCGTGCAACTGGTTTCTGGACCTCCAACCAAGCTGCTGCTTATGGACTGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp AATGGACTCTTTCAGCTCTGGCCAGTCCATAAGCAGCAGCTTGGTTaGAGGTCCAGAAACCAGTTGCACGCGCAGAAAGTCAGAAAACTC +
Preference number: 5 (lower is better)
Translates to: NGLFQLWPVHKQQLG*RSRNQLHAQKVRKL
Trigger: GAGTTTTCTGACTTTCTGCGCGTGCAACTGGTTTCTGGACCTCCAACCAAGCTGCTGCTTATGGACTGGCCAGAGCTGAAAGAGTCCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp CTGCTGGCAATTGAACGGACATTAGAAACAGCTGGGGTAGCTGGTTaGCTGTCAGGAACCAACTTCATAGGCTGGTTGGGGAGAACATCA +
Preference number: 5 (lower is better)
Translates to: LLAIERTLETAGVAG*LSGTNFIGWLGRTS
Trigger: TGATGTTCTCCCCAACCAGCCTATGAAGTTGGTTCCTGACAGCCAACCAGCTACCCCAGCTGTTTCTAATGTCCGTTCAATTGCCAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTGGTTGTGCTGTTATGTaGTCTGACTCATCCACAACT +
Preference number: 5 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEIGCAVM*SDSSTT
Trigger: AGTTGTGGATGAGTCAGACAACATAACAGCACAACC...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTAGTGGACGATCAGCTTaGGTTGTGCTGTTATGTTGT +
Preference number: 5 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEISGRSA*VVLLCC
Trigger: ACAACATAACAGCACAACCAAAGCTGATCGTCCACT...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp CTTTGGTACTGGAGCTCCGAAGACCATTCCCCGAAGTTTGTCCATTaGCGGAGCTTTATTCTGAAGGCCCCCAAACTTCCCATTACTTCT +
Preference number: 5 (lower is better)
Translates to: LWYWSSEDHSPKFVH*RSFILKAPKLPITS
Trigger: AGAAGTAATGGGAAGTTTGGGGGCCTTCAGAATAAAGCTCCGCCAATGGACAAACTTCGGGGAATGGTCTTCGGAGCTCCAGTACCAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTAACTTCATAGGCTGGTaGGGGAGAACATCAACTATA +
Preference number: 5 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEINFIGW*GRTSTI
Trigger: TATAGTTGATGTTCTCCCCAACCAGCCTATGAAGTT...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTGGGTCTCTTTTAACTTaGCTTCTTCAGCTTGGCATT +
Preference number: 5 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEIGSLLT*LLQLGI
Trigger: AATGCCAAGCTGAAGAAGCAAAGTTAAAAGAGACCC...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp ACAGCTGGGGTAGCTGGTTGGCTGTCAGGAACCAACTTCATAGGCTaGTTGGGGAGAACATCAACTATAACCTGTTGGCTGCTTAGAATA +
Preference number: 5 (lower is better)
Translates to: TAGVAGWLSGTNFIG*LGRTSTITCWLLRI
Trigger: TATTCTAAGCAGCCAACAGGTTATAGTTGATGTTCTCCCCAACCAGCCTATGAAGTTGGTTCCTGACAGCCAACCAGCTACCCCAGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 90 bp CCGTCCATTCCAAAAACACTCAAAGATCGGCCTCTTCCCTCGAGCTaGTTTCTCGGATATGAAACAGTCATCATCGTCGTCTTCATCCTT +
Preference number: 5 (lower is better)
Translates to: PSIPKTLKDRPLPSS*FLGYETVIIVVFIL
Trigger: AAGGATGAAGACGACGATGATGACTGTTTCATATCCGAGAAAGCAGCTCGAGGGAAGAGGCCGATCTTTGAGTGTTTTTGGAATGGACGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 90 bp CCTATCCAGCTTTGCAATGGGCACAGTTTTTATTTCATCATACAGTaGCTGGGGTTCCATGGCAATCTGAACTTCACCTCCCGTCGCATA +
Preference number: 5 (lower is better)
Translates to: PIQLCNGHSFYFIIQ*LGFHGNLNFTSRRI
Trigger: TATGCGACGGGAGGTGAAGTTCAGATTGCCATGGAACCCCAGGCACTGTATGATGAAATAAAAACTGTGCCCATTGCAAAGCTGGATAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 90 bp GCATCAGTGGTTAGGGTAACCACACAGTCCATGTCACTTGCCAGATaGCAAGAGATAACCATGGCAGCTCGATCATCTTCAATTTGTGCT +
Preference number: 5 (lower is better)
Translates to: ASVVRVTTQSMSLAR*QEITMAARSSSICA
Trigger: AGCACAAATTGAAGATGATCGAGCTGCCATGGTTATCTCTTGGCATCTGGCAAGTGACATGGACTGTGTGGTTACCCTAACCACTGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp ATCGCCTTTTGCTCCTCTACACTAAAGATCTGCAGGCAAGCAGCGTaGCTACTGGGAAGTAACTTGATCGTCTTTTCAACAGGTGACACA +
Preference number: 5 (lower is better)
Translates to: IAFCSSTLKICRQAA*LLGSNLIVFSTGDT
Trigger: TGTGTCACCTGTTGAAAAGACGATCAAGTTACTTCCCAGTAGCCACGCTGCTTGCCTGCAGATCTTTAGTGTAGAGGAGCAAAAGGCGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp CTGCTGAATAAGATCTATTTGTTTCCCCAAGACCACACACTGCTTTaGTACTGGAGCTCCGAAGACCATTCCCCGAAGTTTGTCCATTGG +
Preference number: 5 (lower is better)
Translates to: LLNKIYLFPQDHTLL*YWSSEDHSPKFVHW
Trigger: CCAATGGACAAACTTCGGGGAATGGTCTTCGGAGCTCCAGTACCAAAGCAGTGTGTGGTCTTGGGGAAACAAATAGATCTTATTCAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp AGCTTCAATGGCTTCCAGGCCCATTTGGAGGAACAGGAAATTCTTGCCAGGATTCAGATGAAATGCCAATaGTCTGACACACAGAAGCGC +
Preference number: 5 (lower is better)
Translates to: SFNGFQAHLEEQEILARIQMKCQ*SDTQKR
Trigger: GCGCTTCTGTGTGTCAGACAATTGGCATTTCATCTG...AATCCTGGCAAGAATTTCCTGTTCCTCCAAATGGGCCTGGAAGCCATTGAAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GACGGGCCCAACGACTGCAATGACCCCAGGAAATTTGTGCTGCCCCATGAGATTTGTATTTCCCTTAGGTaGATAATCTTAGGTGTCTTC +
Preference number: 5 (lower is better)
Translates to: DGPNDCNDPRKFVLPHEICISLR*IILGVF
Trigger: GAAGACACCTAAGATTATCAACCTAAGGGAAATACA...AATCTCATGGGGCAGCACAAATTTCCTGGGGTCATTGCAGTCGTTGGGCCCGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp CTTCTCATTCTTTTAGTAGGGATTGGGCACTCTGTCACCTCAATCTTTGGTGAGATCAAGGGGCAACACTaGCTGGCGACCTTGAGTTTC +
Preference number: 5 (lower is better)
Translates to: LLILLVGIGHSVTSIFGEIKGQH*LATLSF
Trigger: GAAACTCAAGGTCGCCAGCAAGTGTTGCCCCTTGAT...CTCACCAAAGATTGAGGTGACAGAGTGCCCAATCCCTACTAAAAGAATGAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233839.2
CDS TCA 90 bp TGCAGTATGACTTTAAGTTCCACCAGCAGCTTCTTTGACCCTCCATaGCTTGTCCCTGGGAGTTTCTGCATTGCTTCCCCCTTTTTGTTT +
Preference number: 5 (lower is better)
Translates to: CSMTLSSTSSFFDPP*LVPGSFCIASPFLF
Trigger: AAACAAAAAGGGGGAAGCAATGCAGAAACTCCCAGGGACAAGTCATGGAGGGTCAAAGAAGCTGCTGGTGGAACTTAAAGTCATACTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp CAATGGGCACAGTTTTTATTTCATCATACAGTGCCTGGGGTTCCATaGCAATCTGAACTTCACCTCCCGTCGCATACACTTCTCCATCAT +
Preference number: 5 (lower is better)
Translates to: QWAQFLFHHTVPGVP*QSELHLPSHTLLHH
Trigger: ATGATGGAGAAGTGTATGCGACGGGAGGTGAAGTTCAGATTGCCATGGAACCCCAGGCACTGTATGATGAAATAAAAACTGTGCCCATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp GCTCTTATTATAGACACCTTTAACCTGCACAGTGTGTTCTCCCCTTaGAGCACAAACAGTGAACACCCCCAAATTAGCTCTGCCCTTATC +
Preference number: 5 (lower is better)
Translates to: ALIIDTFNLHSVFSP*STNSEHPQISSALI
Trigger: GATAAGGGCAGAGCTAATTTGGGGGTGTTCACTGTTTGTGCTCCAAGGGGAGAACACACTGTGCAGGTTAAAGGTGTCTATAATAAGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp AGCTTCAATGGCTTCCAGGCCCATTTGGAGGAACAGGAAATTCTTGCCAGGATTCTGGGAGTTTCTGCATaGCTTCCCCCTTTTTGTTTA +
Preference number: 5 (lower is better)
Translates to: SFNGFQAHLEEQEILARILGVSA*LPPFCL
Trigger: TAAACAAAAAGGGGGAAGCAATGCAGAAACTCCCAG...AATCCTGGCAAGAATTTCCTGTTCCTCCAAATGGGCCTGGAAGCCATTGAAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCCACCAGCAGCTTCTTaGACCCTCCATGACTTGTCC +
Preference number: 5 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHPPAAS*TLHDLS
Trigger: GGACAAGTCATGGAGGGTCAAAGAAGCTGCTGGTGG...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACGTAAAACACAGATCCTaGGGTCCAGGAGGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHVKHRS*GPGGPG
Trigger: TCCAGGGCCTCCTGGACCCAAGGATCTGTGTTTTAC...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 90 bp GGATGGTACCGGATAACCCCTTCCACTACACCGTCTCCTTCAACGTaGGCCTTGAACTCAAAACTATCAGACGCTGTGTTTATATACAAT +
Preference number: 5 (lower is better)
Translates to: GWYRITPSTTPSPST*ALNSKLSDAVFIYN
Trigger: ATTGTATATAAACACAGCGTCTGATAGTTTTGAGTTCAAGGCTCACGTTGAAGGAGACGGTGTAGTGGAAGGGGTTATCCGGTACCATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 90 bp AACACTCAAAGATCGGCCTCTTCCCTCGAGCTGCTTTCTCGGATATaGAACAGTCATCATCGTCGTCTTCATCCTTTAGCTTTGATGGAA +
Preference number: 5 (lower is better)
Translates to: NTQRSASSLELLSRI*NSHHRRLHPLALME
Trigger: TTCCATCAAAGCTAAAGGATGAAGACGACGATGATGACTGTTTCATATCCGAGAAAGCAGCTCGAGGGAAGAGGCCGATCTTTGAGTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 90 bp TCAATTCTTTCTTTCGTCGCCGTCAGTAGTGACTGGTCAACTGACTaGAGCAGGTACAGAGTGACTCCATCTTTAACAGTGTGGTCAAAA +
Preference number: 5 (lower is better)
Translates to: SILSFVAVSSDWSTD*SRYRVTPSLTVWSK
Trigger: TTTTGACCACACTGTTAAAGATGGAGTCACTCTGTACCTGCTGCAGTCAGTTGACCAGTCACTACTGACGGCGACGAAAGAAAGAATTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127430.2
ENSMUST00000233872.2
CDS CCA 90 bp TTTCACAAAGGGAAACTCAAGCGTCCTAACCTTCCCGATGAAGAGTaGGGTATCAGTGTCCTCCTCATTAAAGCCTTTAATGGTTGCTAC +
Preference number: 5 (lower is better)
Translates to: FHKGKLKRPNLPDEE*GISVLLIKAFNGCY
Trigger: GTAGCAACCATTAAAGGCTTTAATGAGGAGGACACTGATACCCCACTCTTCATCGGGAAGGTTAGGACGCTTGAGTTTCCCTTTGTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATTTGTTGCCCAGGGGCCTaGCTTTTTAGTGGGAAGATC +
Preference number: 5 (lower is better)
Translates to: LGCPITNSYRTQSLGYPICCPGA*LFSGKI
Trigger: GATCTTCCCACTAAAAAGCAAGGCCCCTGGGCAACA...AATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TTTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATAGGTCCAGAAACCAGTaGCACGCGCAGAAAGTCAGA +
Preference number: 5 (lower is better)
Translates to: FRLSYHQLIQDTIFRLSYRSRNQ*HAQKVR
Trigger: TCTGACTTTCTGCGCGTGCAACTGGTTTCTGGACCT...ATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 90 bp GAAGAGTGGGGTATCAGTGTCCTCCTCATTAAAGCCTTTAATGGTTaGTACTACAGTGCCAACCAGATCCATTCCAGTGTGATTACCATA +
Preference number: 5 (lower is better)
Translates to: EEWGISVLLIKAFNG*YYSANQIHSSVITI
Trigger: TATGGTAATCACACTGGAATGGATCTGGTTGGCACTGTAGTAGCAACCATTAAAGGCTTTAATGAGGAGGACACTGATACCCCACTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATTACCATTCCCCGAAGTTaGTCCATTGGCGGAGCTTTA +
Preference number: 5 (lower is better)
Translates to: LGCPITNSYRTQSLGYPITIPRS*SIGGAL
Trigger: TAAAGCTCCGCCAATGGACAAACTTCGGGGAATGGT...AATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 90 bp AAACTTACAGTGGACGATCAGCTTTGGTTGTGCTGTTATGTTGTCTaGCTCATCCACAACTTCCACCTGAAATGGGAAAGCTGTTCCATT +
Preference number: 5 (lower is better)
Translates to: KLTVDDQLWLCCYVV*LIHNFHLKWESCSI
Trigger: AATGGAACAGCTTTCCCATTTCAGGTGGAAGTTGTGGATGAGTCAGACAACATAACAGCACAACCAAAGCTGATCGTCCACTGTAAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 90 bp TGTCTTGTAAATTTTGACAGCCTATACACAGCCCAGTTGTTAAGCTaGTTAGAGGTCATTCCTCTTCCATTATCTACCACTGCGACAGCA +
Preference number: 5 (lower is better)
Translates to: CLVNFDSLYTAQLLS*LEVIPLPLSTTATA
Trigger: TGCTGTCGCAGTGGTAGATAATGGAAGAGGAATGACCTCTAAGCAGCTTAACAACTGGGCTGTGTATAGGCTGTCAAAATTTACAAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 90 bp TGCTTATCATTCTGGCTGATTGCCCAACAAAGAAAACAGCCTGTTTaGCTCCAACACCAAAATAGGAAATGTCACTGTTCAAACTGCGTG +
Preference number: 5 (lower is better)
Translates to: CLSFWLIAQQRKQPV*LQHQNRKCHCSNCV
Trigger: CACGCAGTTTGAACAGTGACATTTCCTATTTTGGTGTTGGAGGCAAACAGGCTGTTTTCTTTGTTGGGCAATCAGCCAGAATGATAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp CATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACCAACTCATTGACCCTCCATGACTaGTCCCTGGGAGTTTCTGCA +
Preference number: 5 (lower is better)
Translates to: HILLIYRIQSLGCPITNSLTLHD*SLGVSA
Trigger: TGCAGAAACTCCCAGGGACAAGTCATGGAGGGTCAA...TGAGTTGGTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TTTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATTTCTCCTTGAAGCTCTaGGCCCATCTGCACTGTTTT +
Preference number: 5 (lower is better)
Translates to: FRLSYHQLIQDTIFRLSYFSLKL*AHLHCF
Trigger: AAAACAGTGCAGATGGGCCAAGAGCTTCAAGGAGAA...ATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACTTGGTACGTCACCTTTaGGCCTTCTATTCTGTCTGG +
Preference number: 5 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHLVRHL*AFYSVW
Trigger: CCAGACAGAATAGAAGGCCAAAAGGTGACGTACCAA...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 90 bp ATTAGATTGCGTATTACATCACCTGCTACCCAAGTAACCTCATCCTaGTGTTTGATCTGGATCGCCTTTTGCTCCTCTACACTAAAGATC +
Preference number: 5 (lower is better)
Translates to: IRLRITSPATQVTSS*CLIWIAFCSSTLKI
Trigger: GATCTTTAGTGTAGAGGAGCAAAAGGCGATCCAGATCAAACATCAGGATGAGGTTACTTGGGTAGCAGGTGATGTAATACGCAATCTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp ATCTTGGAAAGAAACATGGCAGTAGCGGACATCTTTCACAGATGTTaGTACTTGCACATCAGGAAGGAGACCTTGTACCAAATGTTCTTT +
Preference number: 5 (lower is better)
Translates to: ILERNMAVADIFHRC*YLHIRKETLYQMFF
Trigger: AAAGAACATTTGGTACAAGGTCTCCTTCCTGATGTGCAAGTACCAACATCTGTGAAAGATGTCCGCTACTGCCATGTTTCTTTCCAAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp AGTTCATTTCGTAGCTGGGTCTCTTTTAACTTTGCTTCTTCAGCTTaGCATTTCATTTCATCCACAAGCTGCTTGTTGGCATCGAAGAGA +
Preference number: 5 (lower is better)
Translates to: SSFRSWVSFNFASSA*HFISSTSCLLASKR
Trigger: TCTCTTCGATGCCAACAAGCAGCTTGTGGATGAAATGAAATGCCAAGCTGAAGAAGCAAAGTTAAAAGAGACCCAGCTACGAAATGAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp ATGTGCAATCTTTCCCAAAATATCTCCACTGCGTTTAGTGTAGTTTaGAAGAGTACACAACCTTCTGGGCCTCTTTTTAAGCTCGTTCTG +
Preference number: 5 (lower is better)
Translates to: MCNLSQNISTAFSVV*KSTQPSGPLFKLVL
Trigger: CAGAACGAGCTTAAAAAGAGGCCCAGAAGGTTGTGTACTCTTCCAAACTACACTAAACGCAGTGGAGATATTTTGGGAAAGATTGCACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACACCAGTTGGCCTGCTTaGTATATTTTCCCATCCCAT +
Preference number: 5 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHTSWPA*YIFPSH
Trigger: ATGGGATGGGAAAATATACAAAGCAGGCCAACTGGT...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TCTAATATGTTCATGATTATGCTGAGGAGCAGGAAGTTGTCTTCAGGGCAGGAATGTACCAAATGTTCTTaGTTCACCTCAGGAGTCCAA +
Preference number: 5 (lower is better)
Translates to: SNMFMIMLRSRKLSSGQECTKCS*FTSGVQ
Trigger: TTGGACTCCTGAGGTGAACAAAGAACATTTGGTACA...TTCCTGCCCTGAAGACAACTTCCTGCTCCTCAGCATAATCATGAACATATTAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 90 bp TTTAACTTTGCTTCTTCAGCTTGGCATTTCATTTCATCCACAAGCTaGTTGTTGGCATCGAAGAGACTTCTGTACATAGTGATGGACTTG +
Preference number: 5 (lower is better)
Translates to: FNFASSAWHFISSTS*LLASKRLLYIVMDL
Trigger: CAAGTCCATCACTATGTACAGAAGTCTCTTCGATGCCAACAAGCAGCTTGTGGATGAAATGAAATGCCAAGCTGAAGAAGCAAAGTTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTCAGAGAGGAAGTGTCTaGATTGTCTTGACCAGTTGG +
Preference number: 5 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLQRGSV*IVLTSW
Trigger: CCAACTGGTCAAGACAATCAAGACACTTCCTCTCTG...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATTTATAGACTGGTAGGTTaGGAGCACCTAGAAACTTAC +
Preference number: 5 (lower is better)
Translates to: LGCPITNSYRTQSLGYPIYRLVG*EHLETY
Trigger: GTAAGTTTCTAGGTGCTCCAAACCTACCAGTCTATA...AATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp AGGACACAATCTTTAGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACATGTTCCTGATACAGTaGACAGCCGAGGCTCAAAGA +
Preference number: 5 (lower is better)
Translates to: RTQSLGYPILTNVFVYLNMFLIQ*TAEAQR
Trigger: TCTTTGAGCCTCGGCTGTCAACTGTATCAGGAACAT...GTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCTAAAGATTGTGTCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTCGTAAGCGCTGCCATTaGTTGCTGCTTCTTAACATC +
Preference number: 5 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLRKRCH*LLLLNI
Trigger: GATGTTAAGAAGCAGCAACAAATGGCAGCGCTTACG...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 90 bp AAGAATAACCTTCAGATTAAAATTCTTGCCCTGGCAAGAGTTAACTaGACCTTTAGCTACGACACCTTGAATTACACAATTCGGGCCTTT +
Preference number: 5 (lower is better)
Translates to: KNNLQIKILALARVN*TFSYDTLNYTIRAF
Trigger: AAAGGCCCGAATTGTGTAATTCAAGGTGTCGTAGCTAAAGGTCCAGTTAACTCTTGCCAGGGCAAGAATTTTAATCTGAAGGTTATTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp AGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGTCCCATCCCATTCTATaGCTGAAAATGTTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: RLSYSHQCFCVSEHLNSQSHPIL*LKMLPR
Trigger: CCTGGGCAACATTTTCAGCAATAGAATGGGATGGGA...CTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TTTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATGAAAACTTTTCTGGCTaGCCCTCTTTAACAGAGAAT +
Preference number: 5 (lower is better)
Translates to: FRLSYHQLIQDTIFRLSYENFSG*PSLTEN
Trigger: ATTCTCTGTTAAAGAGGGCAAGCCAGAAAAGTTTTC...ATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TTTAGGCTGTCCTATCACCAACTCATACAGGACACAATCTTTAGGCTATCCTATATCAGGAAGGAGACCTaGTACCAAATGTTCTTTGTT +
Preference number: 5 (lower is better)
Translates to: FRLSYHQLIQDTIFRLSYIRKET*YQMFFV
Trigger: AACAAAGAACATTTGGTACAAGGTCTCCTTCCTGAT...ATAGGATAGCCTAAAGATTGTGTCCTGTATGAGTTGGTGATAGGACAGCCTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTACACACGTGGTCATCTaGGAAAGAAACATGGCAGTA +
Preference number: 5 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLTHVVI*ERNMAV
Trigger: TACTGCCATGTTTCTTTCCAAGATGACCACGTGTGT...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp AGGACACAATCTTTAGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACTACAACTATTTCTCCTaGAAGCTCTTGGCCCATCTG +
Preference number: 5 (lower is better)
Translates to: RTQSLGYPILTNVFVYLNYNYFS*KLLAHL
Trigger: CAGATGGGCCAAGAGCTTCAAGGAGAAATAGTTGTA...GTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCTAAAGATTGTGTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACTGGTCATATTTAACATaGAGGCGAATGGGCTTTTCA +
Preference number: 5 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHWSYLT*RRMGFS
Trigger: TGAAAAGCCCATTCGCCTCAATGTTAAATATGACCA...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 90 bp CTTGCTTCAAGAACTGGCTCAATATCAGACAATAGTTGGGTAGTGTaGCCAAATTCATCCTGTAACTCCAGAGGAATATTAAATGGAACT +
Preference number: 5 (lower is better)
Translates to: LASRTGSISDNSWVV*PNSSCNSRGILNGT
Trigger: AGTTCCATTTAATATTCCTCTGGAGTTACAGGATGAATTTGGTCACACTACCCAACTATTGTCTGATATTGAGCCAGTTCTTGAAGCAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp GCTGCTGCATATCTTACTTATATACAGGATACAGTCTTTAGGCTGTCCTATCACAAAGGTCCAATGGCTTaGGCTGTACTTATTTCATTT +
Preference number: 5 (lower is better)
Translates to: AAAYLTYIQDTVFRLSYHKGPMA*AVLISF
Trigger: AAATGAAATAAGTACAGCCAAAGCCATTGGACCTTT...GTGATAGGACAGCCTAAAGACTGTATCCTGTATATAAGTAAGATATGCAGCAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTATCTATCAGGGAGCCTaGCCATTTCATCTTCTACAT +
Preference number: 5 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLIYQGA*PFHLLH
Trigger: ATGTAGAAGATGAAATGGCAAGGCTCCCTGATAGAT...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGACACCTGTGCTTCATCTTTCACAGATGTaGGTACTTGCACATCAGGAA +
Preference number: 5 (lower is better)
Translates to: SHQCFCVSEHLNSQTPVLHLSQM*VLAHQE
Trigger: TTCCTGATGTGCAAGTACCAACATCTGTGAAAGATG...AAGCACAGGTGTCTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp AGGACACAATCTTTAGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACCTTTGCTTCTTCAGCTaGGCATTTCATTTCATCCAC +
Preference number: 5 (lower is better)
Translates to: RTQSLGYPILTNVFVYLNLCFFS*AFHFIH
Trigger: GTGGATGAAATGAAATGCCAAGCTGAAGAAGCAAAG...GTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCTAAAGATTGTGTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp AGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGGTGCTTCAATATGAGTaGTCTGTTGTGTCGCAGGAA +
Preference number: 5 (lower is better)
Translates to: RLSYSHQCFCVSEHLNSQVLQYE*SVVSQE
Trigger: TTCCTGCGACACAACAGACAACTCATATTGAAGCAC...CTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTCTGTCACCTCAATCTTaGGTGAGTGACAAAGTGACT +
Preference number: 5 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSLSPQS*VSDKVT
Trigger: AGTCACTTTGTCACTCACCAAAGATTGAGGTGACAG...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 90 bp GCCTTGAACTCAAAACTATCAGACGCTGTGTTTATATACAATGTCTaGATGTCATCTTGTATTTCCCTTAGGTTGATAATCTTAGGTGTC +
Preference number: 5 (lower is better)
Translates to: ALNSKLSDAVFIYNV*MSSCISLRLIILGV
Trigger: GACACCTAAGATTATCAACCTAAGGGAAATACAAGATGACATGCAGACATTGTATATAAACACAGCGTCTGATAGTTTTGAGTTCAAGGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTCTTCATCCTTTAGCTTaGATGGAAAGCATGGGTCAT +
Preference number: 5 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSLHPLA*MESMGH
Trigger: ATGACCCATGCTTTCCATCAAAGCTAAAGGATGAAG...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp AGGCTATCCTATTCTCACCAATGTTTTTGTGTATCTGAACATTTAAATTCCCAGCTACTGGGAAGTAACTaGATCGTCTTTTCAACAGGT +
Preference number: 5 (lower is better)
Translates to: RLSYSHQCFCVSEHLNSQLLGSN*IVFSTG
Trigger: ACCTGTTGAAAAGACGATCAAGTTACTTCCCAGTAG...CTGGGAATTTAAATGTTCAGATACACAAAAACATTGGTGAGAATAGGATAGCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS-3UTR CAA 90 bp TGTAGAATTAAAGCCAAGTGCTGCTGCATATCTTACTTATATACAGGATACAGTAAGCGCTGCCATTTGTaGCTGCTTCTTAACATCATT +
Preference number: 5 (lower is better)
Translates to: CRIKAKCCCISYLYTGYSKRCHL*LLLNII
Trigger: AATGATGTTAAGAAGCAGCAACAAATGGCAGCGCTT...ACTGTATCCTGTATATAAGTAAGATATGCAGCAGCACTTGGCTTTAATTCTACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 72 bp TTGGGTCCAGGAGGCCCTGGAGTAAACCTGATGCCTTaGACACTTACGCTCTGTGAGTTGGCCTCCAAGGTG +
Preference number: 6 (lower is better)
Translates to: LGPGGPGVNLMP*TLTLCELASKV
Trigger: CACCTTGGAGGCCAACTCACAGAGCGTAAGTGTGCAAGGCATCAGGTTTACTCCAGGGCCTCCTGGACCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp GAGGCGCAGGTCTTTGACCAAGGTCCTGCTGGCAATTaGACGGACATTAGAAACAGCTGGGGTAGCTGGTTG +
Preference number: 6 (lower is better)
Translates to: EAQVFDQGPAGN*TDIRNSWGSWL
Trigger: CAACCAGCTACCCCAGCTGTTTCTAATGTCCGTTCAATTGCCAGCAGGACCTTGGTCAAAGACCTGCGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp TTTCAGCTCTGGCCAGTCCATAAGCAGCAGCTTGGTTaGAGGTCCAGAAACCAGTTGCACGCGCAGAAAGTC +
Preference number: 6 (lower is better)
Translates to: FQLWPVHKQQLG*RSRNQLHAQKV
Trigger: GACTTTCTGCGCGTGCAACTGGTTTCTGGACCTCCAACCAAGCTGCTGCTTATGGACTGGCCAGAGCTGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp TGGAGCTCCGAAGACCATTCCCCGAAGTTTGTCCATTaGCGGAGCTTTATTCTGAAGGCCCCCAAACTTCCC +
Preference number: 6 (lower is better)
Translates to: WSSEDHSPKFVH*RSFILKAPKLP
Trigger: GGGAAGTTTGGGGGCCTTCAGAATAAAGCTCCGCCAATGGACAAACTTCGGGGAATGGTCTTCGGAGCTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp CTGGAGCTCCGAAGACCATTCCCCGAAGTTTGTCCATaGGCGGAGCTTTATTCTGAAGGCCCCCAAACTTCC +
Preference number: 6 (lower is better)
Translates to: LELRRPFPEVCP*AELYSEGPQTS
Trigger: GGAAGTTTGGGGGCCTTCAGAATAAAGCTCCGCCAATGGACAAACTTCGGGGAATGGTCTTCGGAGCTCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp ACAGGAATGGACTCTTTCAGCTCTGGCCAGTCCATAAGCAGCAGCTaGGTTGGAGGTCCAGAAACCAGTTGCACGCGCAGAAAGTCAGAA +
Preference number: 6 (lower is better)
Translates to: TGMDSFSSGQSISSS*VGGPETSCTRRKSE
Trigger: TTCTGACTTTCTGCGCGTGCAACTGGTTTCTGGACCTCCAACCAAGCTGCTGCTTATGGACTGGCCAGAGCTGAAAGAGTCCATTCCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp ACGCGCAGAAAGTCAGAAAACTCTCGCCAAGTAAAACACAGATCCTaGGGTCCAGGAGGCCCTGGAGTAAACCTGATGCCTTGCACACTT +
Preference number: 6 (lower is better)
Translates to: TRRKSENSRQVKHRS*GPGGPGVNLMPCTL
Trigger: AAGTGTGCAAGGCATCAGGTTTACTCCAGGGCCTCCTGGACCCAAGGATCTGTGTTTTACTTGGCGAGAGTTTTCTGACTTTCTGCGCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp TGGCCAGTCCATAAGCAGCAGCTTGGTTGGAGGTCCAGAAACCAGTaGCACGCGCAGAAAGTCAGAAAACTCTCGCCAAGTAAAACACAG +
Preference number: 6 (lower is better)
Translates to: WPVHKQQLGWRSRNQ*HAQKVRKLSPSKTQ
Trigger: CTGTGTTTTACTTGGCGAGAGTTTTCTGACTTTCTGCGCGTGCAACTGGTTTCTGGACCTCCAACCAAGCTGCTGCTTATGGACTGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp GCTTTGGTACTGGAGCTCCGAAGACCATTCCCCGAAGTTTGTCCATaGGCGGAGCTTTATTCTGAAGGCCCCCAAACTTCCCATTACTTC +
Preference number: 6 (lower is better)
Translates to: ALVLELRRPFPEVCP*AELYSEGPQTSHYF
Trigger: GAAGTAATGGGAAGTTTGGGGGCCTTCAGAATAAAGCTCCGCCAATGGACAAACTTCGGGGAATGGTCTTCGGAGCTCCAGTACCAAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp ACTTTAAGTTCCACCAGCAGCTTCTTTGACCCTCCATaGCTTGTCCCTGGGAGTTTCTGCATTGCTTCCCCC +
Preference number: 6 (lower is better)
Translates to: TLSSTSSFFDPP*LVPGSFCIASP
Trigger: GGGGGAAGCAATGCAGAAACTCCCAGGGACAAGTCATGGAGGGTCAAAGAAGCTGCTGGTGGAACTTAAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp CATAAGCAGCAGCTTGGTTGGAGGTCCAGAAACCAGTaGCACGCGCAGAAAGTCAGAAAACTCTCGCCAAGT +
Preference number: 6 (lower is better)
Translates to: HKQQLGWRSRNQ*HAQKVRKLSPS
Trigger: ACTTGGCGAGAGTTTTCTGACTTTCTGCGCGTGCAACTGGTTTCTGGACCTCCAACCAAGCTGCTGCTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp CTTGCACACTTACGCTCTGTGAGTTGGCCTCCAAGGTaGTTTTCAAGTTTGAGCTGTCAAGGCCATCTCCAG +
Preference number: 6 (lower is better)
Translates to: LAHLRSVSWPPR*FSSLSCQGHLQ
Trigger: CTGGAGATGGCCTTGACAGCTCAAACTTGAAAATCACCTTGGAGGCCAACTCACAGAGCGTAAGTGTGCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp CTGCGTGGTACTGGTAATGGCCGGACATACCCTGAGTaGTCAGCAAAGGATTCTGTCCTTCACTCGCATAAT +
Preference number: 6 (lower is better)
Translates to: LRGTGNGRTYPE*SAKDSVLHSHN
Trigger: ATTATGCGAGTGAAGGACAGAATCCTTTGCTGATCACTCAGGGTATGTCCGGCCATTACCAGTACCACGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233872.2
CDS GCA 72 bp TCTTTCGTCGCCGTCAGTAGTGACTGGTCAACTGACTaGAGCAGGTACAGAGTGACTCCATCTTTAACAGTG +
Preference number: 6 (lower is better)
Translates to: SFVAVSSDWSTD*SRYRVTPSLTV
Trigger: CACTGTTAAAGATGGAGTCACTCTGTACCTGCTGCAGTCAGTTGACCAGTCACTACTGACGGCGACGAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127430.2
ENSMUST00000233872.2
CDS GCA 72 bp ATCTGGATCGCCTTTTGCTCCTCTACACTAAAGATCTaGAGGCAAGCAGCGTGGCTACTGGGAAGTAACTTG +
Preference number: 6 (lower is better)
Translates to: IWIAFCSSTLKI*RQAAWLLGSNL
Trigger: CAAGTTACTTCCCAGTAGCCACGCTGCTTGCCTGCAGATCTTTAGTGTAGAGGAGCAAAAGGCGATCCAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp TCTTCCATTAATCACAGGAATGGACTCTTTCAGCTCTaGCCAGTCCATAAGCAGCAGCTTGGTTGGAGGTCC +
Preference number: 6 (lower is better)
Translates to: SSINHRNGLFQL*PVHKQQLGWRS
Trigger: GGACCTCCAACCAAGCTGCTGCTTATGGACTGGCCAGAGCTGAAAGAGTCCATTCCTGTGATTAATGGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp AGGTTTCTGCATTTGCTGGTGGCCGGCTCATGCCACTaGACAGCTTCCACATTTTCATGGAAATACGTGTTG +
Preference number: 6 (lower is better)
Translates to: RFLHLLVAGSCH*TASTFSWKYVL
Trigger: CAACACGTATTTCCATGAAAATGTGGAAGCTGTCCAGTGGCATGAGCCGGCCACCAGCAAATGCAGAAACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp GTAGCTGGTTGGCTGTCAGGAACCAACTTCATAGGCTaGTTGGGGAGAACATCAACTATAACCTGTTGGCTG +
Preference number: 6 (lower is better)
Translates to: VAGWLSGTNFIG*LGRTSTITCWL
Trigger: CAGCCAACAGGTTATAGTTGATGTTCTCCCCAACCAGCCTATGAAGTTGGTTCCTGACAGCCAACCAGCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp GCTGGTTGGCTGTCAGGAACCAACTTCATAGGCTGGTaGGGGAGAACATCAACTATAACCTGTTGGCTGCTT +
Preference number: 6 (lower is better)
Translates to: AGWLSGTNFIGW*GRTSTITCWLL
Trigger: AAGCAGCCAACAGGTTATAGTTGATGTTCTCCCCAACCAGCCTATGAAGTTGGTTCCTGACAGCCAACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp GTAAATAGAATCAAGGGGCAACACTTGCTGGCGACCTaGAGTTTCGTCATAGATAGCGCGTGCGGCATCAGT +
Preference number: 6 (lower is better)
Translates to: VNRIKGQHLLAT*SFVIDSACGIS
Trigger: ACTGATGCCGCACGCGCTATCTATGACGAAACTCAAGGTCGCCAGCAAGTGTTGCCCCTTGATTCTATTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127430.2
ENSMUST00000233839.2
CDS CAA 90 bp TGCTACCCAAGTAACCTCATCCTGATGTTTGATCTGGATCGCCTTTaGCTCCTCTACACTAAAGATCTGCAGGCAAGCAGCGTGGCTACT +
Preference number: 6 (lower is better)
Translates to: CYPSNLILMFDLDRL*LLYTKDLQASSVAT
Trigger: AGTAGCCACGCTGCTTGCCTGCAGATCTTTAGTGTAGAGGAGCAAAAGGCGATCCAGATCAAACATCAGGATGAGGTTACTTGGGTAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp CCAATCTGGAAGAGTTTTCCTGTAAATAGAATCAAGGGGCAACACTaGCTGGCGACCTTGAGTTTCGTCATAGATAGCGCGTGCGGCATC +
Preference number: 6 (lower is better)
Translates to: PIWKSFPVNRIKGQH*LATLSFVIDSACGI
Trigger: GATGCCGCACGCGCTATCTATGACGAAACTCAAGGTCGCCAGCAAGTGTTGCCCCTTGATTCTATTTACAGGAAAACTCTTCCAGATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127430.2
ENSMUST00000233839.2
CDS TCA 72 bp CGGATAACCCCTTCCACTACACCGTCTCCTTCAACGTaGGCCTTGAACTCAAAACTATCAGACGCTGTGTTT +
Preference number: 6 (lower is better)
Translates to: RITPSTTPSPST*ALNSKLSDAVF
Trigger: AAACACAGCGTCTGATAGTTTTGAGTTCAAGGCTCACGTTGAAGGAGACGGTGTAGTGGAAGGGGTTATCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp AGATCGGCCTCTTCCCTCGAGCTGCTTTCTCGGATATaGAACAGTCATCATCGTCGTCTTCATCCTTTAGCT +
Preference number: 6 (lower is better)
Translates to: RSASSLELLSRI*NSHHRRLHPLA
Trigger: AGCTAAAGGATGAAGACGACGATGATGACTGTTTCATATCCGAGAAAGCAGCTCGAGGGAAGAGGCCGATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp GTGCAGTATGACTTTAAGTTCCACCAGCAGCTTCTTTaGCCCTCCATGACTTGTCCCTGGGAGTTTCTGCAT +
Preference number: 6 (lower is better)
Translates to: VQYDFKFHQQLL*PSMTCPWEFLH
Trigger: ATGCAGAAACTCCCAGGGACAAGTCATGGAGGGTCAAAGAAGCTGCTGGTGGAACTTAAAGTCATACTGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp TCTGCAGGCAAGCAGCGTGGCTACTGGGAAGTAACTTaGTCGTCTTTTCAACAGGTGACACATCTTTACAGC +
Preference number: 6 (lower is better)
Translates to: SAGKQRGYWEVT*SSFQQVTHLYS
Trigger: GCTGTAAAGATGTGTCACCTGTTGAAAAGACGATCAAGTTACTTCCCAGTAGCCACGCTGCTTGCCTGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 72 bp GTTAGGGTAACCACACAGTCCATGTCACTTGCCAGATaGCAAGAGATAACCATGGCAGCTCGATCATCTTCA +
Preference number: 6 (lower is better)
Translates to: VRVTTQSMSLAR*QEITMAARSSS
Trigger: TGAAGATGATCGAGCTGCCATGGTTATCTCTTGGCATCTGGCAAGTGACATGGACTGTGTGGTTACCCTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp AAGTCAATTCTTTCTTTCGTCGCCGTCAGTAGTGACTaGTCAACTGACTGCAGCAGGTACAGAGTGACTCCA +
Preference number: 6 (lower is better)
Translates to: KSILSFVAVSSD*STDCSRYRVTP
Trigger: TGGAGTCACTCTGTACCTGCTGCAGTCAGTTGACCAGTCACTACTGACGGCGACGAAAGAAAGAATTGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127430.2
ENSMUST00000233872.2
CDS CAA 72 bp TACTGTAAAGGCGCTCTCCAGACACACGTGGTCATCTaGGAAAGAAACATGGCAGTAGCGGACATCTTTCAC +
Preference number: 6 (lower is better)
Translates to: YCKGALQTHVVI*ERNMAVADIFH
Trigger: GTGAAAGATGTCCGCTACTGCCATGTTTCTTTCCAAGATGACCACGTGTGTCTGGAGAGCGCCTTTACAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp GCTGGGGTAGCTGGTTGGCTGTCAGGAACCAACTTCATAGGCTGGTaGGGGAGAACATCAACTATAACCTGTTGGCTGCTTAGAATATTT +
Preference number: 6 (lower is better)
Translates to: AGVAGWLSGTNFIGW*GRTSTITCWLLRIF
Trigger: AAATATTCTAAGCAGCCAACAGGTTATAGTTGATGTTCTCCCCAACCAGCCTATGAAGTTGGTTCCTGACAGCCAACCAGCTACCCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp AGCTGCTTGTTGGCATCGAAGAGACTTCTGTACATAGTGATGGACTaGGATAACTCGTCCTTCTCCTTCGTAAGCGCTGCCATTTGTTGC +
Preference number: 6 (lower is better)
Translates to: SCLLASKRLLYIVMD*DNSSFSFVSAAICC
Trigger: GCAACAAATGGCAGCGCTTACGAAGGAGAAGGACGAGTTATCCAAGTCCATCACTATGTACAGAAGTCTCTTCGATGCCAACAAGCAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp CTGGTAGGTTTGGAGCACCTAGAAACTTACAGTGGACGATCAGCTTaGGTTGTGCTGTTATGTTGTCTGACTCATCCACAACTTCCACCT +
Preference number: 6 (lower is better)
Translates to: LVGLEHLETYSGRSA*VVLLCCLTHPQLPP
Trigger: AGGTGGAAGTTGTGGATGAGTCAGACAACATAACAGCACAACCAAAGCTGATCGTCCACTGTAAGTTTCTAGGTGCTCCAAACCTACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp GTGGACGATCAGCTTTGGTTGTGCTGTTATGTTGTCTaGCTCATCCACAACTTCCACCTGAAATGGGAAAGC +
Preference number: 6 (lower is better)
Translates to: VDDQLWLCCYVV*LIHNFHLKWES
Trigger: GCTTTCCCATTTCAGGTGGAAGTTGTGGATGAGTCAGACAACATAACAGCACAACCAAAGCTGATCGTCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 72 bp CTCCAACACCAAAATAGGAAATGTCACTGTTCAAACTaGGTGGTACTGGTAATGGCCGGACATACCCTGAGT +
Preference number: 6 (lower is better)
Translates to: LQHQNRKCHCSN*VVLVMAGHTLS
Trigger: ACTCAGGGTATGTCCGGCCATTACCAGTACCACGCAGTTTGAACAGTGACATTTCCTATTTTGGTGTTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp ATAGACACCTTTAACCTGCACAGTGTGTTCTCCCCTTaGAGCACAAACAGTGAACACCCCCAAATTAGCTCT +
Preference number: 6 (lower is better)
Translates to: IDTFNLHSVFSP*STNSEHPQISS
Trigger: AGAGCTAATTTGGGGGTGTTCACTGTTTGTGCTCCAAGGGGAGAACACACTGTGCAGGTTAAAGGTGTCTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp GGGAAACTCAAGCGTCCTAACCTTCCCGATGAAGAGTaGGGTATCAGTGTCCTCCTCATTAAAGCCTTTAAT +
Preference number: 6 (lower is better)
Translates to: GKLKRPNLPDEE*GISVLLIKAFN
Trigger: ATTAAAGGCTTTAATGAGGAGGACACTGATACCCCACTCTTCATCGGGAAGGTTAGGACGCTTGAGTTTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp ATCTGCAGGCAAGCAGCGTGGCTACTGGGAAGTAACTaGATCGTCTTTTCAACAGGTGACACATCTTTACAG +
Preference number: 6 (lower is better)
Translates to: ICRQAAWLLGSN*IVFSTGDTSLQ
Trigger: CTGTAAAGATGTGTCACCTGTTGAAAAGACGATCAAGTTACTTCCCAGTAGCCACGCTGCTTGCCTGCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp ACACTAAAGATCTGCAGGCAAGCAGCGTGGCTACTGGGAAGTAACTaGATCGTCTTTTCAACAGGTGACACATCTTTACAGCTAGGTATC +
Preference number: 6 (lower is better)
Translates to: TLKICRQAAWLLGSN*IVFSTGDTSLQLGI
Trigger: GATACCTAGCTGTAAAGATGTGTCACCTGTTGAAAAGACGATCAAGTTACTTCCCAGTAGCCACGCTGCTTGCCTGCAGATCTTTAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp CCCCTTCCACTACACCGTCTCCTTCAACGTGAGCCTTaGACTCAAAACTATCAGACGCTGTGTTTATATACA +
Preference number: 6 (lower is better)
Translates to: PLPLHRLLQREP*TQNYQTLCLYT
Trigger: TGTATATAAACACAGCGTCTGATAGTTTTGAGTTCAAGGCTCACGTTGAAGGAGACGGTGTAGTGGAAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 72 bp CTTTGCAATGGGCACAGTTTTTATTTCATCATACAGTaGCTGGGGTTCCATGGCAATCTGAACTTCACCTCC +
Preference number: 6 (lower is better)
Translates to: LCNGHSFYFIIQ*LGFHGNLNFTS
Trigger: GGAGGTGAAGTTCAGATTGCCATGGAACCCCAGGCACTGTATGATGAAATAAAAACTGTGCCCATTGCAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 72 bp GGTATCAGTGTCCTCCTCATTAAAGCCTTTAATGGTTaGTACTACAGTGCCAACCAGATCCATTCCAGTGTG +
Preference number: 6 (lower is better)
Translates to: GISVLLIKAFNG*YYSANQIHSSV
Trigger: CACACTGGAATGGATCTGGTTGGCACTGTAGTAGCAACCATTAAAGGCTTTAATGAGGAGGACACTGATACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp CAGTTTTTATTTCATCATACAGTGCCTGGGGTTCCATaGCAATCTGAACTTCACCTCCCGTCGCATACACTT +
Preference number: 6 (lower is better)
Translates to: QFLFHHTVPGVP*QSELHLPSHTL
Trigger: AAGTGTATGCGACGGGAGGTGAAGTTCAGATTGCCATGGAACCCCAGGCACTGTATGATGAAATAAAAACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp AGAAACATGGCAGTAGCGGACATCTTTCACAGATGTTaGTACTTGCACATCAGGAAGGAGACCTTGTACCAA +
Preference number: 6 (lower is better)
Translates to: RNMAVADIFHRC*YLHIRKETLYQ
Trigger: TTGGTACAAGGTCTCCTTCCTGATGTGCAAGTACCAACATCTGTGAAAGATGTCCGCTACTGCCATGTTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp CACAGATGTTGGTACTTGCACATCAGGAAGGAGACCTaGTACCAAATGTTCTTTGTTCACCTCAGGAGTCCA +
Preference number: 6 (lower is better)
Translates to: HRCWYLHIRKET*YQMFFVHLRSP
Trigger: TGGACTCCTGAGGTGAACAAAGAACATTTGGTACAAGGTCTCCTTCCTGATGTGCAAGTACCAACATCTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp AAGAAACATGGCAGTAGCGGACATCTTTCACAGATGTaGGTACTTGCACATCAGGAAGGAGACCTTGTACCA +
Preference number: 6 (lower is better)
Translates to: KKHGSSGHLSQM*VLAHQEGDLVP
Trigger: TGGTACAAGGTCTCCTTCCTGATGTGCAAGTACCAACATCTGTGAAAGATGTCCGCTACTGCCATGTTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp AAGAGTTTTCCTGTAAATAGAATCAAGGGGCAACACTaGCTGGCGACCTTGAGTTTCGTCATAGATAGCGCG +
Preference number: 6 (lower is better)
Translates to: KSFPVNRIKGQH*LATLSFVIDSA
Trigger: CGCGCTATCTATGACGAAACTCAAGGTCGCCAGCAAGTGTTGCCCCTTGATTCTATTTACAGGAAAACTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127430.2
ENSMUST00000233839.2
CDS CAA 72 bp GTACAGAGCAGTGCGATACTGCTGAATAAGATCTATTaGTTTCCCCAAGACCACACACTGCTTTGGTACTGG +
Preference number: 6 (lower is better)
Translates to: VQSSAILLNKIY*FPQDHTLLWYW
Trigger: CCAGTACCAAAGCAGTGTGTGGTCTTGGGGAAACAAATAGATCTTATTCAGCAGTATCGCACTGCTCTGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp GCAGCTTCTTTGACCCTCCATGACTTGTCCCTGGGAGTTTCTGCATaGCTTCCCCCTTTTTGTTTAGAATTTCAATTCTTAATGCACCGA +
Preference number: 6 (lower is better)
Translates to: AASLTLHDLSLGVSA*LPPFCLEFQFLMHR
Trigger: TCGGTGCATTAAGAATTGAAATTCTAAACAAAAAGGGGGAAGCAATGCAGAAACTCCCAGGGACAAGTCATGGAGGGTCAAAGAAGCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp CTGCGTGGTACTGGTAATGGCCGGACATACCCTGAGTaGTCACTTTCAAAGTCACCTTGTCTTGTAAATTTT +
Preference number: 6 (lower is better)
Translates to: LRGTGNGRTYPE*SLSKSPCLVNF
Trigger: AAAATTTACAAGACAAGGTGACTTTGAAAGTGATCACTCAGGGTATGTCCGGCCATTACCAGTACCACGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 72 bp CCCAAATTAGCTCTGCCCTTATCATCTGTTTTATGCTaGTGGTTTGAAGGTAGTAGCCTTAAGCTGCTTGCT +
Preference number: 6 (lower is better)
Translates to: PKLALPLSSVLC*WFEGSSLKLLA
Trigger: AGCAAGCAGCTTAAGGCTACTACCTTCAAACCAGCAGCATAAAACAGATGATAAGGGCAGAGCTAATTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 72 bp ACCCCCAAATTAGCTCTGCCCTTATCATCTGTTTTATaGTGCTGGTTTGAAGGTAGTAGCCTTAAGCTGCTT +
Preference number: 6 (lower is better)
Translates to: TPKLALPLSSVL*CWFEGSSLKLL
Trigger: AAGCAGCTTAAGGCTACTACCTTCAAACCAGCAGCATAAAACAGATGATAAGGGCAGAGCTAATTTGGGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp CTGGCAAGAGTTAACTGGACCTTTAGCTACGACACCTaGAATTACACAATTCGGGCCTTTGGTTATTCCTTC +
Preference number: 6 (lower is better)
Translates to: LARVNWTFSYDT*NYTIRAFGYSF
Trigger: GAAGGAATAACCAAAGGCCCGAATTGTGTAATTCAAGGTGTCGTAGCTAAAGGTCCAGTTAACTCTTGCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp TTGGAGCACCTAGAAACTTACAGTGGACGATCAGCTTaGGTTGTGCTGTTATGTTGTCTGACTCATCCACAA +
Preference number: 6 (lower is better)
Translates to: LEHLETYSGRSA*VVLLCCLTHPQ
Trigger: TTGTGGATGAGTCAGACAACATAACAGCACAACCAAAGCTGATCGTCCACTGTAAGTTTCTAGGTGCTCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp TCAGCTTGGCATTTCATTTCATCCACAAGCTGCTTGTaGGCATCGAAGAGACTTCTGTACATAGTGATGGAC +
Preference number: 6 (lower is better)
Translates to: SAWHFISSTSCL*ASKRLLYIVMD
Trigger: GTCCATCACTATGTACAGAAGTCTCTTCGATGCCAACAAGCAGCTTGTGGATGAAATGAAATGCCAAGCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp GAAAGAAACATGGCAGTAGCGGACATCTTTCACAGATGTTGGTACTaGCACATCAGGAAGGAGACCTTGTACCAAATGTTCTTTGTTCAC +
Preference number: 6 (lower is better)
Translates to: ERNMAVADIFHRCWY*HIRKETLYQMFFVH
Trigger: GTGAACAAAGAACATTTGGTACAAGGTCTCCTTCCTGATGTGCAAGTACCAACATCTGTGAAAGATGTCCGCTACTGCCATGTTTCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp CATCTTGGAAAGAAACATGGCAGTAGCGGACATCTTTCACAGATGTaGGTACTTGCACATCAGGAAGGAGACCTTGTACCAAATGTTCTT +
Preference number: 6 (lower is better)
Translates to: HLGKKHGSSGHLSQM*VLAHQEGDLVPNVL
Trigger: AAGAACATTTGGTACAAGGTCTCCTTCCTGATGTGCAAGTACCAACATCTGTGAAAGATGTCCGCTACTGCCATGTTTCTTTCCAAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp TGGCAAGAGTTAACTGGACCTTTAGCTACGACACCTTaGATTACACAATTCGGGCCTTTGGTTATTCCTTCA +
Preference number: 6 (lower is better)
Translates to: WQELTGPLATTP*ITQFGPLVIPS
Trigger: TGAAGGAATAACCAAAGGCCCGAATTGTGTAATTCAAGGTGTCGTAGCTAAAGGTCCAGTTAACTCTTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 72 bp TTCTGGCTGATTGCCCAACAAAGAAAACAGCCTGTTTaGCTCCAACACCAAAATAGGAAATGTCACTGTTCA +
Preference number: 6 (lower is better)
Translates to: FWLIAQQRKQPV*LQHQNRKCHCS
Trigger: TGAACAGTGACATTTCCTATTTTGGTGTTGGAGGCAAACAGGCTGTTTTCTTTGTTGGGCAATCAGCCAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp GACATCTTTCACAGATGTTGGTACTTGCACATCAGGAAGGAGACCTaGTACCAAATGTTCTTTGTTCACCTCAGGAGTCCAATTAACCTT +
Preference number: 6 (lower is better)
Translates to: DIFHRCWYLHIRKET*YQMFFVHLRSPINL
Trigger: AAGGTTAATTGGACTCCTGAGGTGAACAAAGAACATTTGGTACAAGGTCTCCTTCCTGATGTGCAAGTACCAACATCTGTGAAAGATGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp TTTGCTTCTTCAGCTTGGCATTTCATTTCATCCACAAGCTGCTTGTaGGCATCGAAGAGACTTCTGTACATAGTGATGGACTTGGATAAC +
Preference number: 6 (lower is better)
Translates to: FASSAWHFISSTSCL*ASKRLLYIVMDLDN
Trigger: GTTATCCAAGTCCATCACTATGTACAGAAGTCTCTTCGATGCCAACAAGCAGCTTGTGGATGAAATGAAATGCCAAGCTGAAGAAGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp AACTTTGCTTCTTCAGCTTGGCATTTCATTTCATCCACAAGCTGCTaGTTGGCATCGAAGAGACTTCTGTACATAGTGATGGACTTGGAT +
Preference number: 6 (lower is better)
Translates to: NFASSAWHFISSTSC*LASKRLLYIVMDLD
Trigger: ATCCAAGTCCATCACTATGTACAGAAGTCTCTTCGATGCCAACAAGCAGCTTGTGGATGAAATGAAATGCCAAGCTGAAGAAGCAAAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS GCA 72 bp AATTTTGACAGCCTATACACAGCCCAGTTGTTAAGCTaGTTAGAGGTCATTCCTCTTCCATTATCTACCACT +
Preference number: 6 (lower is better)
Translates to: NFDSLYTAQLLS*LEVIPLPLSTT
Trigger: AGTGGTAGATAATGGAAGAGGAATGACCTCTAAGCAGCTTAACAACTGGGCTGTGTATAGGCTGTCAAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp CTTTCCCAAAATATCTCCACTGCGTTTAGTGTAGTTTaGAAGAGTACACAACCTTCTGGGCCTCTTTTTAAG +
Preference number: 6 (lower is better)
Translates to: LSQNISTAFSVV*KSTQPSGPLFK
Trigger: CTTAAAAAGAGGCCCAGAAGGTTGTGTACTCTTCCAAACTACACTAAACGCAGTGGAGATATTTTGGGAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp TTGACCCTCCATGACTTGTCCCTGGGAGTTTCTGCATaGCTTCCCCCTTTTTGTTTAGAATTTCAATTCTTA +
Preference number: 6 (lower is better)
Translates to: LTLHDLSLGVSA*LPPFCLEFQFL
Trigger: TAAGAATTGAAATTCTAAACAAAAAGGGGGAAGCAATGCAGAAACTCCCAGGGACAAGTCATGGAGGGTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp CCTGCTATAAAAGAGGCATCTTGGTCATATTTAACATaGAGGCGAATGGGCTTTTCAGGGTCTGGAAGAATT +
Preference number: 6 (lower is better)
Translates to: PAIKEASWSYLT*RRMGFSGSGRI
Trigger: AATTCTTCCAGACCCTGAAAAGCCCATTCGCCTCAATGTTAAATATGACCAAGATGCCTCTTTTATAGCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp AAGTCACCTTGTCTTGTAAATTTTGACAGCCTATACACAGCCCAGTaGTTAAGCTGCTTAGAGGTCATTCCTCTTCCATTATCTACCACT +
Preference number: 6 (lower is better)
Translates to: KSPCLVNFDSLYTAQ*LSCLEVIPLPLSTT
Trigger: AGTGGTAGATAATGGAAGAGGAATGACCTCTAAGCAGCTTAACAACTGGGCTGTGTATAGGCTGTCAAAATTTACAAGACAAGGTGACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp TGTCTTGTAAATTTTGACAGCCTATACACAGCCCAGTaGTTAAGCTGCTTAGAGGTCATTCCTCTTCCATTA +
Preference number: 6 (lower is better)
Translates to: CLVNFDSLYTAQ*LSCLEVIPLPL
Trigger: TAATGGAAGAGGAATGACCTCTAAGCAGCTTAACAACTGGGCTGTGTATAGGCTGTCAAAATTTACAAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp TGTATTCTCCTAACACCATTATTTCGAGAAGTAGCTGACAATGAATaGTCGATTAACTCTGCAAGAGCAAATGGCAAAGGATTCTGTCCT +
Preference number: 6 (lower is better)
Translates to: CILLTPLFREVADNE*SINSARANGKGFCP
Trigger: AGGACAGAATCCTTTGCCATTTGCTCTTGCAGAGTTAATCGACAATTCATTGTCAGCTACTTCTCGAAATAATGGTGTTAGGAGAATACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 90 bp TATTGTACGCTTTTAGTTCATTTCGTAGCTGGGTCTCTTTTAACTTaGCTTCTTCAGCTTGGCATTTCATTTCATCCACAAGCTGCTTGT +
Preference number: 6 (lower is better)
Translates to: YCTLLVHFVAGSLLT*LLQLGISFHPQAAC
Trigger: ACAAGCAGCTTGTGGATGAAATGAAATGCCAAGCTGAAGAAGCAAAGTTAAAAGAGACCCAGCTACGAAATGAACTAAAAGCGTACAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS TCA 72 bp AGAACTGGCTCAATATCAGACAATAGTTGGGTAGTGTaGCCAAATTCATCCTGTAACTCCAGAGGAATATTA +
Preference number: 6 (lower is better)
Translates to: RTGSISDNSWVV*PNSSCNSRGIL
Trigger: TAATATTCCTCTGGAGTTACAGGATGAATTTGGTCACACTACCCAACTATTGTCTGATATTGAGCCAGTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CCA 72 bp CTTCAGATTAAAATTCTTGCCCTGGCAAGAGTTAACTaGACCTTTAGCTACGACACCTTGAATTACACAATT +
Preference number: 6 (lower is better)
Translates to: LQIKILALARVN*TFSYDTLNYTI
Trigger: AATTGTGTAATTCAAGGTGTCGTAGCTAAAGGTCCAGTTAACTCTTGCCAGGGCAAGAATTTTAATCTGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp CTAACACCATTATTTCGAGAAGTAGCTGACAATGAATaGTCGATTAACTCTGCAAGAGCAAATGGCAAAGGA +
Preference number: 6 (lower is better)
Translates to: LTPLFREVADNE*SINSARANGKG
Trigger: TCCTTTGCCATTTGCTCTTGCAGAGTTAATCGACAATTCATTGTCAGCTACTTCTCGAAATAATGGTGTTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp TTTAAACCAGGAAGAATAACCTTCAGATTAAAATTCTaGCCCTGGCAAGAGTTAACTGGACCTTTAGCTACG +
Preference number: 6 (lower is better)
Translates to: FKPGRITFRLKF*PWQELTGPLAT
Trigger: CGTAGCTAAAGGTCCAGTTAACTCTTGCCAGGGCAAGAATTTTAATCTGAAGGTTATTCTTCCTGGTTTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp TGCACATCAGGAAGGAGACCTTGTACCAAATGTTCTTaGTTCACCTCAGGAGTCCAATTAACCTTAATTTTT +
Preference number: 6 (lower is better)
Translates to: CTSGRRPCTKCS*FTSGVQLTLIF
Trigger: AAAAATTAAGGTTAATTGGACTCCTGAGGTGAACAAAGAACATTTGGTACAAGGTCTCCTTCCTGATGTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2
CDS CAA 72 bp CTTTTAGTTCATTTCGTAGCTGGGTCTCTTTTAACTTaGCTTCTTCAGCTTGGCATTTCATTTCATCCACAA +
Preference number: 6 (lower is better)
Translates to: LLVHFVAGSLLT*LLQLGISFHPQ
Trigger: TTGTGGATGAAATGAAATGCCAAGCTGAAGAAGCAAAGTTAAAAGAGACCCAGCTACGAAATGAACTAAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127430.2