RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMC5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024943

Ensembl transcript IDs: ENSMUST00000087556.7, ENSMUST00000223934.2, ENSMUST00000226111.2

Found 206 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGCCTCCTACTCCTAAACGCTGGGCTAGATGTGGGCCACCACACCTaGGGGGCAGCACAAAGCTGCACACAACAATCCCGTGCTCACAGA +
Preference number: 1 (lower is better)
Translates to: CLLLLNAGLDVGHHT*GAAQSCTQQSRAHR
Trigger: TCTGTGAGCACGGGATTGTTGTGTGCAGCTTTGTGCTGCCCCTCAGGTGTGGTGGCCCACATCTAGCCCAGCGTTTAGGAGTAGGAGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR GCA 90 bp CCACCACACCTGAGGGGCAGCACAAAGCTGCACACAACAATCCCGTaGTCACAGAGAACTAACGAGGCAATGTCCACCAAAAGTGAAGAC +
Preference number: 1 (lower is better)
Translates to: PPHLRGSTKLHTTIP*SQRTNEAMSTKSED
Trigger: GTCTTCACTTTTGGTGGACATTGCCTCGTTAGTTCTCTGTGAGCACGGGATTGTTGTGTGCAGCTTTGTGCTGCCCCTCAGGTGTGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR GCA 90 bp TCTGTTTGGAACTGGAGAGATGGCTCAGTGGTTAAGTCTACTGGATaGTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACC +
Preference number: 1 (lower is better)
Translates to: SVWNWRDGSVVKSTG*SSTGPNFYTQHPYT
Trigger: GGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCAGTAGACTTAACCACTGAGCCATCTCTCCAGTTCCAAACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR TCA 90 bp CAATGTTCTGCACTCAGCACTGTTGTAGTTAGTAAACACTCTGACTaGAATCCCACGCTGCCATACCTTCGATTTGCAACAGGAAATAGC +
Preference number: 1 (lower is better)
Translates to: QCSALSTVVVSKHSD*NPTLPYLRFATGNS
Trigger: GCTATTTCCTGTTGCAAATCGAAGGTATGGCAGCGTGGGATTTCAGTCAGAGTGTTTACTAACTACAACAGTGCTGAGTGCAGAACATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR GCA 90 bp ACTAGATATAATACTGGAAGAAAAGTGGGATTTCTAATCCTGGGTTaGCTTTATTCTCTCAGTCAATGTTCTGCACTCAGCACTGTTGTA +
Preference number: 1 (lower is better)
Translates to: TRYNTGRKVGFLILG*LYSLSQCSALSTVV
Trigger: TACAACAGTGCTGAGTGCAGAACATTGACTGAGAGAATAAAGGCAACCCAGGATTAGAAATCCCACTTTTCTTCCAGTATTATATCTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR-3UTR TCA 90 bp TGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCCACCCTGCCAGTGTCTaGGCCACATTCTGTATCATC +
Preference number: 2 (lower is better)
Translates to: WMLFHRTQFLYPAPIYQFHPASV*ATFCII
Trigger: GATGATACAGAATGTGGCTCAGACACTGGCAGGGTG...GAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR-3UTR TCA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGACTAACTCCTGTCACCTaGTCTCACCCTGCCAGTGTC +
Preference number: 2 (lower is better)
Translates to: YVQGYWKAARNLCLELERLTPVT*SHPASV
Trigger: GACACTGGCAGGGTGAGATCAGGTGACAGGAGTTAG...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR-3UTR TCA 90 bp TCTCTGTTTGGAACTGGAGAGATGGCTCAGTGGTTAAGTCTACTGGATGCTCTTATCATCTTTACCTTGTaGCCTCTCAAAGTCCTCCTG +
Preference number: 2 (lower is better)
Translates to: SLFGTGEMAQWLSLLDALIIFTL*PLKVLL
Trigger: CAGGAGGACTTTGAGAGGTCACAAGGTAAAGATGAT...AAGAGCATCCAGTAGACTTAACCACTGAGCCATCTCTCCAGTTCCAAACAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR-3UTR GCA 90 bp TGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCTCTCAGTCAATGTTCTaGACTCAGCACTGTTGTAGT +
Preference number: 2 (lower is better)
Translates to: WMLFHRTQFLYPAPIYQFSQSMF*TQHCCS
Trigger: ACTACAACAGTGCTGAGTGCAGAACATTGACTGAGA...GAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR-3UTR TCA 90 bp AGTCTACTGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATAGTCCTCCTGTCATTTTaGAGCCTCATGCATATGTTT +
Preference number: 2 (lower is better)
Translates to: SLLDALPQDPISIPSTHIVLLSF*SLMHMF
Trigger: AAACATATGCATGAGGCTTCAAAATGACAGGAGGAC...TATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCAGTAGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR CAA 90 bp TTAGTAAACACTCTGACTGAAATCCCACGCTGCCATACCTTCGATTaGCAACAGGAAATAGCCTTTTCTGTTATGACACATGAAACCACT +
Preference number: 2 (lower is better)
Translates to: LVNTLTEIPRCHTFD*QQEIAFSVMTHETT
Trigger: AGTGGTTTCATGTGTCATAACAGAAAAGGCTATTTCCTGTTGCAAATCGAAGGTATGGCAGCGTGGGATTTCAGTCAGAGTGTTTACTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR-3UTR GCA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGACATTTTGAAGCCTCATaGATATGTTTTCCCAATTCT +
Preference number: 2 (lower is better)
Translates to: YVQGYWKAARNLCLELERHFEAS*ICFPNS
Trigger: AGAATTGGGAAAACATATGCATGAGGCTTCAAAATG...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR CCA 72 bp AAACTGATAACCTTCCTGCCTCCTACTCCTAAACGCTaGGCTAGATGTGGGCCACCACACCTGAGGGGCAGC +
Preference number: 3 (lower is better)
Translates to: KLITFLPPTPKR*ARCGPPHLRGS
Trigger: GCTGCCCCTCAGGTGTGGTGGCCCACATCTAGCCCAGCGTTTAGGAGTAGGAGGCAGGAAGGTTATCAGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR GCA 72 bp CTGAGGGGCAGCACAAAGCTGCACACAACAATCCCGTaGTCACAGAGAACTAACGAGGCAATGTCCACCAAA +
Preference number: 3 (lower is better)
Translates to: LRGSTKLHTTIP*SQRTNEAMSTK
Trigger: TTTGGTGGACATTGCCTCGTTAGTTCTCTGTGAGCACGGGATTGTTGTGTGCAGCTTTGTGCTGCCCCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR GCA 72 bp CACTTATACGCTAACTCCTGTCACCTGATCTCACCCTaGCAGTGTCTGAGCCACATTCTGTATCATCTTTAC +
Preference number: 3 (lower is better)
Translates to: HLYANSCHLISP*QCLSHILYHLY
Trigger: GTAAAGATGATACAGAATGTGGCTCAGACACTGGCAGGGTGAGATCAGGTGACAGGAGTTAGCGTATAAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR-3UTR CAA 90 bp TCTCTGTTTGGAACTGGAGAGATGGCTCAGTGGTTAAGTCTACTGGATGCTCTTAGTCCTCCTGTCATTTaGAAGCCTCATGCATATGTT +
Preference number: 3 (lower is better)
Translates to: SLFGTGEMAQWLSLLDALSPPVI*KPHAYV
Trigger: AACATATGCATGAGGCTTCAAAATGACAGGAGGACT...AAGAGCATCCAGTAGACTTAACCACTGAGCCATCTCTCCAGTTCCAAACAGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR TCA 72 bp TTTGCAACAGGAAATAGCCTTTTCTGTTATGACACATaGAACCACTCAAAAACTGATAACCTTCCTGCCTCC +
Preference number: 3 (lower is better)
Translates to: FATGNSLFCYDT*NHSKTDNLPAS
Trigger: GGAGGCAGGAAGGTTATCAGTTTTTGAGTGGTTTCATGTGTCATAACAGAAAAGGCTATTTCCTGTTGCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCAAACTTGCCAGCTTGGAGCTaGTTTTCTGCTCCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: CSSTGPNFYTQHPYTSSNLPAWS*FSAPAA
Trigger: GGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAA...GTTTGAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCAAACTCCCCAACTTTGTCCTaGGGCAAGAACTGGCACAGA +
Preference number: 4 (lower is better)
Translates to: CSSTGPNFYTQHPYTSSNSPTLS*GKNWHR
Trigger: TCTGTGCCAGTTCTTGCCTCAGGACAAAGTTGGGGA...GTTTGAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp AGTCTACTGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATAAAGGATTCAGTCCTGTaGAGCACGAAGCTCTTGACC +
Preference number: 4 (lower is better)
Translates to: SLLDALPQDPISIPSTHIKDSVL*STKLLT
Trigger: GGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTT...TATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCAGTAGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGAGCCTCAGATCATTTGTaGCGGTGTCGATCTGAGGCT +
Preference number: 4 (lower is better)
Translates to: YVQGYWKAARNLCLELERASDHL*RCRSEA
Trigger: AGCCTCAGATCGACACCGTCACAAATGATCTGAGGC...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCGTCATTCAGAGATCTTaGAGGGGCTTTGTCTGCATA +
Preference number: 4 (lower is better)
Translates to: WMLFHRTQFLYPAPIYQFVIQRS*RGFVCI
Trigger: TATGCAGACAAAGCCCCTTCAAGATCTCTGAATGAC...GAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR GCA 90 bp TGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCAGAACTGGCACAGATTaGCCACTTGGATGTTTAAGG +
Preference number: 4 (lower is better)
Translates to: WMLFHRTQFLYPAPIYQFRTGTD*PLGCLR
Trigger: CCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCT...GAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR GCA 90 bp AGTCTACTGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATATCACAGTGGTATCTGTaGATCTCTGGAGGACCAACT +
Preference number: 4 (lower is better)
Translates to: SLLDALPQDPISIPSTHISQWYL*ISGGPT
Trigger: AGTTGGTCCTCCAGAGATGCACAGATACCACTGTGA...TATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCAGTAGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR GCA 90 bp AGTCTACTGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATATTGGAGCTGATTTTCTaGTCCAGCTGCCTTTTCCTG +
Preference number: 4 (lower is better)
Translates to: SLLDALPQDPISIPSTHILELIF*SSCLFL
Trigger: CAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAA...TATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCAGTAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CCA 90 bp TCTCTGTTTGGAACTGGAGAGATGGCTCAGTGGTTAAGTCTACTGGATGCTCTTTTAAGAAGTTCTCCATaGCGATGCGGACGATTGAGC +
Preference number: 4 (lower is better)
Translates to: SLFGTGEMAQWLSLLDALLRSSP*RCGRLS
Trigger: GCTCAATCGTCCGCATCGCCATGGAGAACTTCTTAA...AAGAGCATCCAGTAGACTTAACCACTGAGCCATCTCTCCAGTTCCAAACAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CCA 90 bp TCTCTGTTTGGAACTGGAGAGATGGCTCAGTGGTTAAGTCTACTGGATGCTCTTTCTTGTGGAACAGCTTaGTCAGCACTCAGGTTGCAT +
Preference number: 4 (lower is better)
Translates to: SLFGTGEMAQWLSLLDALSCGTA*SALRLH
Trigger: ATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGA...AAGAGCATCCAGTAGACTTAACCACTGAGCCATCTCTCCAGTTCCAAACAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CCA 90 bp TGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCTGTGTCCATTTGGAATaGTGGGTACTTGTGTCTGGA +
Preference number: 4 (lower is better)
Translates to: WMLFHRTQFLYPAPIYQFCVHLE*WVLVSG
Trigger: TCCAGACACAAGTACCCACCATTCCAAATGGACACA...GAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TCTCTGTTTGGAACTGGAGAGATGGCTCAGTGGTTAAGTCTACTGGATGCTCTTCTTCGCCGACGCCTTTaGAAAGCCTTTAAATTCCAT +
Preference number: 4 (lower is better)
Translates to: SLFGTGEMAQWLSLLDALLRRRL*KAFKFH
Trigger: ATGGAATTTAAAGGCTTTTCAAAGGCGTCGGCGAAG...AAGAGCATCCAGTAGACTTAACCACTGAGCCATCTCTCCAGTTCCAAACAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR GCA 90 bp TGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCAAACTCCAGCTCTTCATTCTaGTTGACTGTTAATGCCTGC +
Preference number: 4 (lower is better)
Translates to: CSSTGPNFYTQHPYTSSNSSSSF*LTVNAC
Trigger: GCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGA...GTTTGAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CCA 90 bp TGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCAAACGTAACAGTGAGGAACTaGGCTACTTTCAGGGATGTA +
Preference number: 4 (lower is better)
Translates to: CSSTGPNFYTQHPYTSSNVTVRN*ATFRDV
Trigger: TACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTAC...GTTTGAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TCTCTGTTTGGAACTGGAGAGATGGCTCAGTGGTTAAGTCTACTGGATGCTCTTTGTCACGAACCTCTCTaGGGAAAATCTCCATATCTT +
Preference number: 4 (lower is better)
Translates to: SLFGTGEMAQWLSLLDALCHEPL*GKSPYL
Trigger: AAGATATGGAGATTTTCCTCAGAGAGGTTCGTGACA...AAGAGCATCCAGTAGACTTAACCACTGAGCCATCTCTCCAGTTCCAAACAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATCAAGGCAGCCAACCCTaGGTCCACTGCTTCCAGTTG +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHQGSQP*VHCFQL
Trigger: CAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTG...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATACAAGGCAGCCAACCCTaGGTCCACTGCTTCCAGTTG +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIQGSQP*VHCFQL
Trigger: CAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTG...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TCTCTGTTTGGAACTGGAGAGATGGCTCAGTGGTTAAGTCTACTGGATGCTCTTAGTCTTGCCTTTGCTTaGATTTCTGAGATGCTTCCT +
Preference number: 4 (lower is better)
Translates to: SLFGTGEMAQWLSLLDALSLAFA*ISEMLP
Trigger: AGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACT...AAGAGCATCCAGTAGACTTAACCACTGAGCCATCTCTCCAGTTCCAAACAGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAGGCACACACGATGCTTaGCTTCCCTGTTCCATTGGC +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIGTHDA*LPCSIG
Trigger: GCCAATGGAACAGGGAAGTCAAGCATCGTGTGTGCC...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTTGCCAGCTTGGAGCTaGTTTTCTGCTCCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHLPAWS*FSAPAA
Trigger: GGCAGCTGGAGCAGAAAATCAGCTCCAAGCTGGCAA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGAAAATGGCACACACGATaGTTGACTTCCCTGTTCCAT +
Preference number: 4 (lower is better)
Translates to: YVQGYWKAARNLCLELERKWHTR*LTSLFH
Trigger: ATGGAACAGGGAAGTCAAGCATCGTGTGTGCCATTT...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CCA 90 bp ACTGGAAGAAAAGTGGGATTTCTAATCCTGGGTTGCCTTTATTCTCTCAGTCAAATGATCATGTTCAGATaGGGCCCAGGAGACACTTCA +
Preference number: 4 (lower is better)
Translates to: TGRKVGFLILGCLYSLSQMIMFR*GPGDTS
Trigger: TGAAGTGTCTCCTGGGCCCCATCTGAACATGATCAT...TTGACTGAGAGAATAAAGGCAACCCAGGATTAGAAATCCCACTTTTCTTCCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CCA 90 bp TGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCAAACTTTTTGAGTTCACAGTaGTATCTGTGCATCTCTGGA +
Preference number: 4 (lower is better)
Translates to: CSSTGPNFYTQHPYTSSNFLSSQ*YLCISG
Trigger: TCCAGAGATGCACAGATACCACTGTGAACTCAAAAA...GTTTGAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CCA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGACCACCCATGGTCTTTTaGCCTCAAGCATCTCAATTA +
Preference number: 4 (lower is better)
Translates to: YVQGYWKAARNLCLELERPPMVF*PQASQL
Trigger: TAATTGAGATGCTTGAGGCCAAAAGACCATGGGTGG...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
3UTR CAA 72 bp ACTCTGACTGAAATCCCACGCTGCCATACCTTCGATTaGCAACAGGAAATAGCCTTTTCTGTTATGACACAT +
Preference number: 4 (lower is better)
Translates to: TLTEIPRCHTFD*QQEIAFSVMTH
Trigger: ATGTGTCATAACAGAAAAGGCTATTTCCTGTTGCAAATCGAAGGTATGGCAGCGTGGGATTTCAGTCAGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATGCCTCAGATCATTTGTaGCGGTGTCGATCTGAGGCT +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHASDHL*RCRSEA
Trigger: AGCCTCAGATCGACACCGTCACAAATGATCTGAGGC...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp ACTGGAAGAAAAGTGGGATTTCTAATCCTGGGTTGCCTTTATTCTCTCAGTCAATCAAACCGTGTAATATaGTCACTCACACTCCGTCTC +
Preference number: 4 (lower is better)
Translates to: TGRKVGFLILGCLYSLSQSNRVI*SLTLRL
Trigger: GAGACGGAGTGTGAGTGATCATATTACACGGTTTGA...TTGACTGAGAGAATAAAGGCAACCCAGGATTAGAAATCCCACTTTTCTTCCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR GCA 90 bp TGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCGAATTTGAAAAGAAGTaGATATCTTTACAAGGCCTG +
Preference number: 4 (lower is better)
Translates to: WMLFHRTQFLYPAPIYQFEFEKK*ISLQGL
Trigger: CAGGCCTTGTAAAGATATGCACTTCTTTTCAAATTC...GAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATTCCATTGGCTCCAATaGTCATGTTCAGATGGGGCC +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIFHWLQ*SCSDGA
Trigger: GGCCCCATCTGAACATGATCATTGGAGCCAATGGAA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGAGATTTCCAGAAGTCCTaGACAGTTCAATTTCAACCA +
Preference number: 4 (lower is better)
Translates to: YVQGYWKAARNLCLELERDFQKS*TVQFQP
Trigger: TGGTTGAAATTGAACTGTTCAGGACTTCTGGAAATC...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATCTCTGGAGGACCAACTaGCTTCTCAGTAGCTTCAAG +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHLWRTN*LLSSFK
Trigger: CTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAG...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATACTCTGGAGGACCAACTaGCTTCTCAGTAGCTTCAAG +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHILWRTN*LLSSFK
Trigger: CTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAG...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAAAGGATTCAGTCCTGTaGAGCACGAAGCTCTTGACC +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIKDSVL*STKLLT
Trigger: GGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTT...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATCAAGAGGTCTCTAGCTaGTTCTCCTTCTCCCTGAAG +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHQEVSS*FSFSLK
Trigger: CTTCAGGGAGAAGGAGAAGCAGCTAGAGACCTCTTG...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGAATTCAGTTTTCTCTTTaGAAGAGGTCTCTAGCTGCT +
Preference number: 4 (lower is better)
Translates to: YVQGYWKAARNLCLELERIQFSL*KRSLAA
Trigger: AGCAGCTAGAGACCTCTTGCAAAGAGAAAACTGAAT...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR GCA 90 bp ACTGGAAGAAAAGTGGGATTTCTAATCCTGGGTTGCCTTTATTCTCTCAGTCAATTACTTATTCTCTTCTaGCGGTCCAGCTCTTCATTC +
Preference number: 4 (lower is better)
Translates to: TGRKVGFLILGCLYSLSQLLILF*RSSSSF
Trigger: GAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAA...TTGACTGAGAGAATAAAGGCAACCCAGGATTAGAAATCCCACTTTTCTTCCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CCA 90 bp TTCGATTTGCAACAGGAAATAGCCTTTTCTGTTATGACACATGAAACCACTCAACACAGATTGCCCACTTaGATGTTTAAGGCTGCAACC +
Preference number: 4 (lower is better)
Translates to: FDLQQEIAFSVMTHETTQHRLPT*MFKAAT
Trigger: GGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTG...TTGAGTGGTTTCATGTGTCATAACAGAAAAGGCTATTTCCTGTTGCAAATCGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CCA 90 bp ACTGGAAGAAAAGTGGGATTTCTAATCCTGGGTTGCCTTTATTCTCTCAGTCAAGTCCATTTGGAATGGTaGGTACTTGTGTCTGGAATT +
Preference number: 4 (lower is better)
Translates to: TGRKVGFLILGCLYSLSQVHLEW*VLVSGI
Trigger: AATTCCAGACACAAGTACCCACCATTCCAAATGGAC...TTGACTGAGAGAATAAAGGCAACCCAGGATTAGAAATCCCACTTTTCTTCCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TTCGATTTGCAACAGGAAATAGCCTTTTCTGTTATGACACATGAAACCACTCAACTCGCTGTTTATCAATaGTCTCGCCTTCACATAAGG +
Preference number: 4 (lower is better)
Translates to: FDLQQEIAFSVMTHETTQLAVYQ*SRLHIR
Trigger: CCTTATGTGAAGGCGAGATCATTGATAAACAGCGAG...TTGAGTGGTTTCATGTGTCATAACAGAAAAGGCTATTTCCTGTTGCAAATCGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAGGCTTTGTCTGCATATaGGATCTTGGGGGCAATAAC +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIGFVCI*DLGGNN
Trigger: GTTATTGCCCCCAAGATCTCATATGCAGACAAAGCC...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp TTCGATTTGCAACAGGAAATAGCCTTTTCTGTTATGACACATGAAACCACTCAACATCTGTTAAGCTCCTaGAGTGCCATCAAGTATAGC +
Preference number: 4 (lower is better)
Translates to: FDLQQEIAFSVMTHETTQHLLSS*SAIKYS
Trigger: GCTATACTTGATGGCACTTCAGGAGCTTAACAGATG...TTGAGTGGTTTCATGTGTCATAACAGAAAAGGCTATTTCCTGTTGCAAATCGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR GCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAAAACCCAACCTTATCTaGACGTCCCATGAAAGCAGG +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIKPNLI*TSHESR
Trigger: CCTGCTTTCATGGGACGTGCAGATAAGGTTGGGTTT...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAAACCCAACCTTATCTaGACGTCCCATGAAAGCAGG +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHKPNLI*TSHESR
Trigger: CCTGCTTTCATGGGACGTGCAGATAAGGTTGGGTTT...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTCACAGTGGTATCTGTaGATCTCTGGAGGACCAACT +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHSQWYL*ISGGPT
Trigger: AGTTGGTCCTCCAGAGATGCACAGATACCACTGTGA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTTGGAGCTGATTTTCTaGTCCAGCTGCCTTTTCCTG +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHLELIF*SSCLFL
Trigger: CAGGAAAAGGCAGCTGGAGCAGAAAATCAGCTCCAA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATTAAGAAGTTCTCCATaGCGATGCGGACGATTGAGC +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHILRSSP*RCGRLS
Trigger: GCTCAATCGTCCGCATCGCCATGGAGAACTTCTTAA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATGATCATGTTCAGATaGGGCCCAGGAGACACTTCA +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHMIMFR*GPGDTS
Trigger: TGAAGTGTCTCCTGGGCCCCATCTGAACATGATCAT...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATCTTGTGGAACAGCTTaGTCAGCACTCAGGTTGCAT +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHISCGTA*SALRLH
Trigger: ATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAGGAGCTGTGTCCATTTaGAATGGTGGGTACTTGTGT +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIGAVSI*NGGYLC
Trigger: ACACAAGTACCCACCATTCCAAATGGACACAGCTCC...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATGCTCTTCATTCTGCTTaGCTGTTAATGCCTGCTGAA +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHALHSA*LLMPAE
Trigger: TTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGC...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATACTCGCTGTTTATCAATaGTCTCGCCTTCACATAAGG +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHILAVYQ*SRLHIR
Trigger: CCTTATGTGAAGGCGAGATCATTGATAAACAGCGAG...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTCAAACCGTGTAATATaGTCACTCACACTCCGTCTC +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHSNRVI*SLTLRL
Trigger: GAGACGGAGTGTGAGTGATCATATTACACGGTTTGA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATGTCATTCAGAGATCTTaGAGGGGCTTTGTCTGCATA +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHVIQRS*RGFVCI
Trigger: TATGCAGACAAAGCCCCTTCAAGATCTCTGAATGAC...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp TTCGATTTGCAACAGGAAATAGCCTTTTCTGTTATGACACATGAAACCACTCAATTCTACTTCTCTTTTTaGGTACTCCTCAACCACCGA +
Preference number: 4 (lower is better)
Translates to: FDLQQEIAFSVMTHETTQFYFSF*VLLNHR
Trigger: TCGGTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAA...TTGAGTGGTTTCATGTGTCATAACAGAAAAGGCTATTTCCTGTTGCAAATCGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATACATCTGTTAAGCTCCTaGAGTGCCATCAAGTATAGC +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIHLLSS*SAIKYS
Trigger: GCTATACTTGATGGCACTTCAGGAGCTTAACAGATG...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATACTTCGCCGACGCCTTTaGAAAGCCTTTAAATTCCAT +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHILRRRL*KAFKFH
Trigger: ATGGAATTTAAAGGCTTTTCAAAGGCGTCGGCGAAG...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAAAATGGCACACACGATaGTTGACTTCCCTGTTCCAT +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIKWHTR*LTSLFH
Trigger: ATGGAACAGGGAAGTCAAGCATCGTGTGTGCCATTT...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATCCAGCTCTTCATTCTaGTTGACTGTTAATGCCTGC +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHISSSSF*LTVNAC
Trigger: GCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATCCACCCATGGTCTTTTaGCCTCAAGCATCTCAATTA +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHPPMVF*PQASQL
Trigger: TAATTGAGATGCTTGAGGCCAAAAGACCATGGGTGG...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAGTAACAGTGAGGAACTaGGCTACTTTCAGGGATGTA +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIVTVRN*ATFRDV
Trigger: TACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTAC...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATGTGGGTACTTGTGTCTaGAATTCTTGTGGAACAGCT +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHVGTCV*NSCGTA
Trigger: AGCTGTTCCACAAGAATTCCAGACACAAGTACCCAC...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TTCGATTTGCAACAGGAAATAGCCTTTTCTGTTATGACACATGAAACCACTCAAACACCTTCATATTCCTaGCGTACATTCTCATATTCC +
Preference number: 4 (lower is better)
Translates to: FDLQQEIAFSVMTHETTQTPSYS*RTFSYS
Trigger: GGAATATGAGAATGTACGTCAGGAATATGAAGGTGT...TTGAGTGGTTTCATGTGTCATAACAGAAAAGGCTATTTCCTGTTGCAAATCGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTGTCACGAACCTCTCTaGGGAAAATCTCCATATCTT +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHCHEPL*GKSPYL
Trigger: AAGATATGGAGATTTTCCTCAGAGAGGTTCGTGACA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATCGTGTCATAGGAATCTaGCCTTCTTTAAGTTTCCTG +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHRVIGI*PSLSFL
Trigger: CAGGAAACTTAAAGAAGGGCAGATTCCTATGACACG...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAGTCTTGCCTTTGCTTaGATTTCTGAGATGCTTCCT +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHSLAFA*ISEMLP
Trigger: AGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACT...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTTACTTATTCTCTTCTaGCGGTCCAGCTCTTCATTC +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHLLILF*RSSSSF
Trigger: GAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATCCAGCTGCCTTTTCCTaGTTTTTCTTTCAAGAAGCT +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHPAAFS*FFFQEA
Trigger: AGCTTCTTGAAAGAAAAACCAGGAAAAGGCAGCTGG...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATGATTTCCAGAAGTCCTaGACAGTTCAATTTCAACCA +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHDFQKS*TVQFQP
Trigger: TGGTTGAAATTGAACTGTTCAGGACTTCTGGAAATC...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATACACCTTCATATTCCTaGCGTACATTCTCATATTCC +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHTPSYS*RTFSYS
Trigger: GGAATATGAGAATGTACGTCAGGAATATGAAGGTGT...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTCCTCATTTTCTGTATaGAGATCAACTTCACCAGCA +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHSSFSV*RSTSPA
Trigger: TGCTGGTGAAGTTGATCTTCATACAGAAAATGAGGA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTTCTACTTCTCTTTTTaGGTACTCCTCAACCACTAC +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHFYFSF*VLLNHY
Trigger: GTAGTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATTCAGTTTTCTCTTTaGAAGAGGTCTCTAGCTGCT +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHIQFSL*KRSLAA
Trigger: AGCAGCTAGAGACCTCTTGCAAAGAGAAAACTGAAT...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATCACCTTTCTTTCACCTaGGAAATGTTTTCCCTGTAT +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHHLSFT*EMFSLY
Trigger: ATACAGGGAAAACATTTCGCAGGTGAAAGAAAGGTG...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATACACCTTTCTTTCACCTaGGAAATGTTTTCCCTGTAT +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIHLSFT*EMFSLY
Trigger: ATACAGGGAAAACATTTCGCAGGTGAAAGAAAGGTG...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATTTTTGAGTTCACAGTaGTATCTGTGCATCTCTGGA +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIFLSSQ*YLCISG
Trigger: TCCAGAGATGCACAGATACCACTGTGAACTCAAAAA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR TCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAGTTAATTCATGCAGCTaGGTACTACTGCGAAATTTT +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIVNSCS*VLLRNF
Trigger: AAAATTTCGCAGTAGTACTCAGCTGCATGAATTAAC...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATCTCCGTTCATTAATTaGGTCCATACCCTGATTAAT +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHISPFIN*VHTLIN
Trigger: ATTAATCAGGGTATGGACCCAATTAATGAACGGAGA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTCTCCGTTCATTAATTaGGTCCATACCCTGATTAAT +
Preference number: 4 (lower is better)
Translates to: SFSFNKSANFYSLERATHSPFIN*VHTLIN
Trigger: ATTAATCAGGGTATGGACCCAATTAATGAACGGAGA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAGTGATGAAGAAATACTaGGATGTGTTCTCTTTACAG +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIVMKKY*DVFSLQ
Trigger: CTGTAAAGAGAACACATCCCAGTATTTCTTCATCAC...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR GCA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAGAATTTGAAAAGAAGTaGATATCTTTACAAGGCCTG +
Preference number: 4 (lower is better)
Translates to: LSLSINLLTFIHLSERHIEFEKK*ISLQGL
Trigger: CAGGCCTTGTAAAGATATGCACTTCTTTTCAAATTC...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS GCA 90 bp CGGACGGCCGCGGCAGCGTCGGCAACGGGTTCGAGTTCTTTCTCTTaGTCGGGACCTCGGAGGAAGCATCTCTCGGGAGAGACCGCTTGG +
Preference number: 5 (lower is better)
Translates to: RTAAAASATGSSSFS*SGPRRKHLSGETAW
Trigger: CCAAGCGGTCTCTCCCGAGAGATGCTTCCTCCGAGGTCCCGAGCAAGAGAAAGAACTCGAACCCGTTGCCGACGCTGCCGCGGCCGTCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS GCA 90 bp GAGACACTTCACAGATGTCATATGTTAAGAAGTTCTCCATGGCGATaGGGACGATTGAGCCCTCGACGAAGGTCCCGGACGGCCGCGGCA +
Preference number: 5 (lower is better)
Translates to: ETLHRCHMLRSSPWR*GRLSPRRRSRTAAA
Trigger: TGCCGCGGCCGTCCGGGACCTTCGTCGAGGGCTCAATCGTCCGCATCGCCATGGAGAACTTCTTAACATATGACATCTGTGAAGTGTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS CCA 90 bp GCCCAGGAGACACTTCACAGATGTCATATGTTAAGAAGTTCTCCATaGCGATGCGGACGATTGAGCCCTCGACGAAGGTCCCGGACGGCC +
Preference number: 5 (lower is better)
Translates to: AQETLHRCHMLRSSP*RCGRLSPRRRSRTA
Trigger: GGCCGTCCGGGACCTTCGTCGAGGGCTCAATCGTCCGCATCGCCATGGAGAACTTCTTAACATATGACATCTGTGAAGTGTCTCCTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS TCA 90 bp CGGTGTCGATCTGAGGCTGAAGGTTCTCGCAGTTTTCCGCAGTCTTaGGCTCACTCTGCAGATCCTCTATCATCTTGCGGGTGTTACTTA +
Preference number: 5 (lower is better)
Translates to: RCRSEAEGSRSFPQS*AHSADPLSSCGCYL
Trigger: TAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CCA 90 bp GGGGGTGAGGAGCTGTGTCCATTTGGAATGGTGGGTACTTGTGTCTaGAATTCTTGTGGAACAGCTTGGTCAGCACTCAGGTTGCATACT +
Preference number: 5 (lower is better)
Translates to: GGEELCPFGMVGTCV*NSCGTAWSALRLHT
Trigger: AGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACACAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS TCA 90 bp AAATGGCACACACGATGCTTGACTTCCCTGTTCCATTGGCTCCAATaGTCATGTTCAGATGGGGCCCAGGAGACACTTCACAGATGTCAT +
Preference number: 5 (lower is better)
Translates to: KWHTRCLTSLFHWLQ*SCSDGAQETLHRCH
Trigger: ATGACATCTGTGAAGTGTCTCCTGGGCCCCATCTGAACATGATCATTGGAGCCAATGGAACAGGGAAGTCAAGCATCGTGTGTGCCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTCTGTTTGGAACTGGAGAGATGGCTCAGTGGTTAAGTCTACTGGATGCTCTTTTCAGCCTTAGCTCGTaGTCTTTGAGCTCAAGGTGC +
Preference number: 5 (lower is better)
Translates to: SLFGTGEMAQWLSLLDALFSLSS*SLSSRC
Trigger: GCACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAA...AAGAGCATCCAGTAGACTTAACCACTGAGCCATCTCTCCAGTTCCAAACAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCCTTATACTTGCCAGCTaGGAGCTGATTTTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: WMLFHRTQFLYPAPIYQFLILAS*ELIFCS
Trigger: GGAGCAGAAAATCAGCTCCAAGCTGGCAAGTATAAG...GAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCAAACTGGTCAGCACTCAGGTaGCATACTTGCCTAGCTTTC +
Preference number: 5 (lower is better)
Translates to: CSSTGPNFYTQHPYTSSNWSALR*HTCLAF
Trigger: GAAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCA...GTTTGAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS TCA 90 bp TTCTGCCGGTCCAGCTCTTCATTCTGCTTGACTGTTAATGCCTGCTaGAGTTCCTTAATCTGTCTGTCCTTCCGTTCAATCAAGTCTTGC +
Preference number: 5 (lower is better)
Translates to: FCRSSSSFCLTVNAC*SSLICLSFRSIKSC
Trigger: GCAAGACTTGATTGAACGGAAGGACAGACAGATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTGGCGATGCGGACGATaGAGCCCTCGACGAAGGTCC +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHWRCGR*SPRRRS
Trigger: GGACCTTCGTCGAGGGCTCAATCGTCCGCATCGCCA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGATGGCACACACGATGCTaGACTTCCCTGTTCCATTGG +
Preference number: 5 (lower is better)
Translates to: YVQGYWKAARNLCLELERWHTRC*TSLFHW
Trigger: CCAATGGAACAGGGAAGTCAAGCATCGTGTGTGCCA...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCTCTTCCTCTTCCAGATaGCAAGTATCCTGTTCCATC +
Preference number: 5 (lower is better)
Translates to: WMLFHRTQFLYPAPIYQFSSSSR*QVSCSI
Trigger: GATGGAACAGGATACTTGCAATCTGGAAGAGGAAGA...GAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS TCA 90 bp TCCTTAATATCGGTTGACTTTTCTTTGATTCGAACTTCCAAAGTGTaGCGCTGCCGGTCAATCTCCTCAATCCGCCGTGTCATAGGAATC +
Preference number: 5 (lower is better)
Translates to: SLISVDFSLIRTSKV*RCRSISSIRRVIGI
Trigger: GATTCCTATGACACGGCGGATTGAGGAGATTGACCGGCAGCGTCACACTTTGGAAGTTCGAATCAAAGAAAAGTCAACCGATATTAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS-3UTR CAA 90 bp TGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCGGGTTCACAGACTCTTaGTTTAAACCTGTCTCTGTT +
Preference number: 5 (lower is better)
Translates to: WMLFHRTQFLYPAPIYQFGFTDS*FKPVSV
Trigger: AACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCC...GAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGACTTAGCTCGTTGTCTTaGAGCTCAAGGTGCCTGTTC +
Preference number: 5 (lower is better)
Translates to: YVQGYWKAARNLCLELERLSSLS*SSRCLF
Trigger: GAACAGGCACCTTGAGCTCAAAGACAACGAGCTAAG...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS TCA 90 bp TCTTCCTTCACTCGGTCACGAATTAGTTTCACACCTTCATATTCCTaGCGTACATTCTCATATTCCACCCATGGTCTTTTGGCCTCAAGC +
Preference number: 5 (lower is better)
Translates to: SSFTRSRISFTPSYS*RTFSYSTHGLLASS
Trigger: GCTTGAGGCCAAAAGACCATGGGTGGAATATGAGAATGTACGTCAGGAATATGAAGGTGTGAAACTAATTCGTGACCGAGTGAAGGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CCA 90 bp TTTGGAATGGTGGGTACTTGTGTCTGGAATTCTTGTGGAACAGCTTaGTCAGCACTCAGGTTGCATACTTGCCTAGCTTTCTTCATAAGT +
Preference number: 5 (lower is better)
Translates to: FGMVGTCVWNSCGTA*SALRLHTCLAFFIS
Trigger: ACTTATGAAGAAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACACAAGTACCCACCATTCCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS CCA 90 bp ATCCAATGTGTTTGGGAGATCTTGAAAAGCTGTCTGGAATTCTTGTaGAACAGCTTGGTCAGCACTCAGGTTGCATACTTGCCTAGCTTT +
Preference number: 5 (lower is better)
Translates to: IQCVWEILKSCLEFL*NSLVSTQVAYLPSF
Trigger: AAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACAGCTTTTCAAGATCTCCCAAACACATTGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS-3UTR CAA 90 bp TCTCTGTTTGGAACTGGAGAGATGGCTCAGTGGTTAAGTCTACTGGATGCTCTTTCTGCATATGAGATCTaGGGGGCAATAACAGCATTT +
Preference number: 5 (lower is better)
Translates to: SLFGTGEMAQWLSLLDALSAYEI*GAITAF
Trigger: AAATGCTGTTATTGCCCCCAAGATCTCATATGCAGA...AAGAGCATCCAGTAGACTTAACCACTGAGCCATCTCTCCAGTTCCAAACAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp ACTGGAAGAAAAGTGGGATTTCTAATCCTGGGTTGCCTTTATTCTCTCAGTCAAAGGAGCTGTGTCCATTaGGAATGGTGGGTACTTGTG +
Preference number: 5 (lower is better)
Translates to: TGRKVGFLILGCLYSLSQRSCVH*EWWVLV
Trigger: CACAAGTACCCACCATTCCAAATGGACACAGCTCCT...TTGACTGAGAGAATAAAGGCAACCCAGGATTAGAAATCCCACTTTTCTTCCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS TCA 90 bp GTTTTTGAGTTCACAGTGGTATCTGTGCATCTCTGGAGGACCAACTaGCTTCTCAGTAGCTTCAAGGAGTTCAATTTTGCTGAGTTTAGC +
Preference number: 5 (lower is better)
Translates to: VFEFTVVSVHLWRTN*LLSSFKEFNFAEFS
Trigger: GCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS TCA 90 bp CTTCTCTTTTTGAGTACTCCTCAACCACCGAAGGATTCAGTCCTGTaGAGCACGAAGCTCTTGACCTTTCTTCAGTTAATAATGCATCGA +
Preference number: 5 (lower is better)
Translates to: LLFLSTPQPPKDSVL*STKLLTFLQLIMHR
Trigger: TCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCGGTGGTTGAGGAGTACTCAAAAAGAGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS TCA 90 bp CTCTTTTTGAGTACTCCTCAACCACTACCGAAGGATTCAGTCCTGTaGAGCACGAAGCTCTTGACCTTTCTTCAGTTAATAATGCATCGA +
Preference number: 5 (lower is better)
Translates to: LFLSTPQPLPKDSVL*STKLLTFLQLIMHR
Trigger: TCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCGGTAGTGGTTGAGGAGTACTCAAAAAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS GCA 90 bp TGGAATTCTTGTGGAACAGCTTGGTCAGCACTCAGGTTGCATACTTaGCTAGCTTTCTTCATAAGTTCCTTGCACTTCTGTAACAATCTC +
Preference number: 5 (lower is better)
Translates to: WNSCGTAWSALRLHT*LAFFISSLHFCNNL
Trigger: GAGATTGTTACAGAAGTGCAAGGAACTTATGAAGAAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS-3UTR CAA 90 bp TGGATGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCTCAAGGAGTTCAATTTaGCTGAGTTTAGCAAATTCC +
Preference number: 5 (lower is better)
Translates to: WMLFHRTQFLYPAPIYQFSRSSI*LSLANS
Trigger: GGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGA...GAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCATCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCAAACTTTACTCTTAACTTCTaGTTGTCACGAACCTCTCTG +
Preference number: 5 (lower is better)
Translates to: CSSTGPNFYTQHPYTSSNFTLNF*LSRTSL
Trigger: CAGAGAGGTTCGTGACAACAAGAAGTTAAGAGTAAA...GTTTGAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGAGATCTTGAAGGGGCTTaGTCTGCATATGAGATCTTG +
Preference number: 5 (lower is better)
Translates to: YVQGYWKAARNLCLELERDLEGA*SAYEIL
Trigger: CAAGATCTCATATGCAGACAAAGCCCCTTCAAGATC...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp ACTGGAAGAAAAGTGGGATTTCTAATCCTGGGTTGCCTTTATTCTCTCAGTCAATTGTGTCTGGAATTCTaGTGGAACAGCTTGGTCAGC +
Preference number: 5 (lower is better)
Translates to: TGRKVGFLILGCLYSLSQLCLEF*WNSLVS
Trigger: GCTGACCAAGCTGTTCCACAAGAATTCCAGACACAA...TTGACTGAGAGAATAAAGGCAACCCAGGATTAGAAATCCCACTTTTCTTCCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGATTAAATTCCATCGGTTaGGCTCCAGCATATGAGGAC +
Preference number: 5 (lower is better)
Translates to: YVQGYWKAARNLCLELERLNSIG*APAYED
Trigger: GTCCTCATATGCTGGAGCCAAACCGATGGAATTTAA...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTTCGAGTTCTTTCTCTaGCTCGGGACCTCGGAGGAA +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHFEFFL*LGTSEE
Trigger: TTCCTCCGAGGTCCCGAGCAAGAGAAAGAACTCGAA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATTCGAGTTCTTTCTCTaGCTCGGGACCTCGGAGGAA +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHIFEFFL*LGTSEE
Trigger: TTCCTCCGAGGTCCCGAGCAAGAGAAAGAACTCGAA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATGGCACACACGATGCTaGACTTCCCTGTTCCATTGG +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHIWHTRC*TSLFHW
Trigger: CCAATGGAACAGGGAAGTCAAGCATCGTGTGTGCCA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGAAATCAAGTCTTGCCTTaGCTTGCATTTCTGAGATGC +
Preference number: 5 (lower is better)
Translates to: YVQGYWKAARNLCLELERNQVLP*LAFLRC
Trigger: GCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATT...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TCTCTGTTTGGAACTGGAGAGATGGCTCAGTGGTTAAGTCTACTGGATGCTCTTAATCTCCATATCTTCTaGACTTTCAAACACAAAGGC +
Preference number: 5 (lower is better)
Translates to: SLFGTGEMAQWLSLLDALNLHIF*TFKHKG
Trigger: GCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATT...AAGAGCATCCAGTAGACTTAACCACTGAGCCATCTCTCCAGTTCCAAACAGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TATGTCCAAGGCTATTGGAAAGCAGCAAGAAATCTCTGTTTGGAACTGGAGAGAATCCAATTCAATGAATaGTTGTTCTGTGACGCGCAG +
Preference number: 5 (lower is better)
Translates to: YVQGYWKAARNLCLELERIQFNE*LFCDAQ
Trigger: CTGCGCGTCACAGAACAACAATTCATTGAATTGGAT...TCTCTCCAGTTCCAAACAGAGATTTCTTGCTGCTTTCCAATAGCCTTGGACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TGCTCTTCCACAGGACCCAATTTCTATACCCAGCACCCATATACCAGTTCAAACTTCTTCATAAGTTCCTaGCACTTCTGTAACAATCTC +
Preference number: 5 (lower is better)
Translates to: CSSTGPNFYTQHPYTSSNFFISS*HFCNNL
Trigger: GAGATTGTTACAGAAGTGCAAGGAACTTATGAAGAA...GTTTGAACTGGTATATGGGTGCTGGGTATAGAAATTGGGTCCTGTGGAAGAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS TCA 90 bp TCAGTTAATAATGCATCGATTTCATCCAATGTGTTTGGGAGATCTTaGAAAGCTGTCTGGAATTCTTGTGGAACAGCTTGGTCAGCACTC +
Preference number: 5 (lower is better)
Translates to: SVNNASISSNVFGRS*KAVWNSCGTAWSAL
Trigger: GAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACAGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATACTTAGCTCGTTGTCTTaGAGCTCAAGGTGCCTGTTC +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHILSSLS*SSRCLF
Trigger: GAACAGGCACCTTGAGCTCAAAGACAACGAGCTAAG...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATTCAGCCTTAGCTCGTaGTCTTTGAGCTCAAGGTGC +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHIFSLSS*SLSSRC
Trigger: GCACCTTGAGCTCAAAGACAACGAGCTAAGGCTGAA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATGGTCAGCACTCAGGTaGCATACTTGCCTAGCTTTC +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHIWSALR*HTCLAF
Trigger: GAAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAAGCTGTCTGGAATTCTaGTGGAACAGCTTGGTCAGC +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHISCLEF*WNSLVS
Trigger: GCTGACCAAGCTGTTCCACAAGAATTCCAGACAGCT...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAGACTTCCCTGTTCCATaGGCTCCAATGATCATGTTC +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHIDFPVP*APMIMF
Trigger: GAACATGATCATTGGAGCCAATGGAACAGGGAAGTC...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATGACTTCCCTGTTCCATaGGCTCCAATGATCATGTTC +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHDFPVP*APMIMF
Trigger: GAACATGATCATTGGAGCCAATGGAACAGGGAAGTC...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTCCACCCATGGTCTTTaGGCCTCAAGCATCTCAATT +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHSTHGL*ASSISI
Trigger: AATTGAGATGCTTGAGGCCAAAAGACCATGGGTGGA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATCCACCCATGGTCTTTaGGCCTCAAGCATCTCAATT +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHISTHGL*ASSISI
Trigger: AATTGAGATGCTTGAGGCCAAAAGACCATGGGTGGA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TTCGATTTGCAACAGGAAATAGCCTTTTCTGTTATGACACATGAAACCACTCAAACTCTTAACTTCTTGTaGTCACGAACCTCTCTGAGG +
Preference number: 5 (lower is better)
Translates to: FDLQQEIAFSVMTHETTQTLNFL*SRTSLR
Trigger: CCTCAGAGAGGTTCGTGACAACAAGAAGTTAAGAGT...TTGAGTGGTTTCATGTGTCATAACAGAAAAGGCTATTTCCTGTTGCAAATCGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATCTTATACTTGCCAGCTaGGAGCTGATTTTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHLILAS*ELIFCS
Trigger: GGAGCAGAAAATCAGCTCCAAGCTGGCAAGTATAAG...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TTCGATTTGCAACAGGAAATAGCCTTTTCTGTTATGACACATGAAACCACTCAACAATTCAATGAATTGTaGTTCTGTGACGCGCAGCTG +
Preference number: 5 (lower is better)
Translates to: FDLQQEIAFSVMTHETTQQFNEL*FCDAQL
Trigger: CAGCTGCGCGTCACAGAACAACAATTCATTGAATTG...TTGAGTGGTTTCATGTGTCATAACAGAAAAGGCTATTTCCTGTTGCAAATCGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TTCGATTTGCAACAGGAAATAGCCTTTTCTGTTATGACACATGAAACCACTCAATGGGTTACAGGCTTTTaGTTGATGAACCAAAAGGAC +
Preference number: 5 (lower is better)
Translates to: FDLQQEIAFSVMTHETTQWVTGF*LMNQKD
Trigger: GTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCA...TTGAGTGGTTTCATGTGTCATAACAGAAAAGGCTATTTCCTGTTGCAAATCGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATACTCTTAACTTCTTGTaGTCACGAACCTCTCTGAGG +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHTLNFL*SRTSLR
Trigger: CCTCAGAGAGGTTCGTGACAACAAGAAGTTAAGAGT...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATGATCTTGAAGGGGCTTaGTCTGCATATGAGATCTTG +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHDLEGA*SAYEIL
Trigger: CAAGATCTCATATGCAGACAAAGCCCCTTCAAGATC...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTCTTCCTCTTCCAGATaGCAAGTATCCTGTTCCATC +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHSSSSR*QVSCSI
Trigger: GATGGAACAGGATACTTGCAATCTGGAAGAGGAAGA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATCAATTCAATGAATTGTaGTTCTGTGACGCGCAGCTG +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHQFNEL*FCDAQL
Trigger: CAGCTGCGCGTCACAGAACAACAATTCATTGAATTG...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTTAAATTCCATCGGTTaGGCTCCAGCATATGAGGAC +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHLNSIG*APAYED
Trigger: GTCCTCATATGCTGGAGCCAAACCGATGGAATTTAA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATGGGTTACAGGCTTTTaGTTGATGAACCAAAAGGAC +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHIWVTGF*LMNQKD
Trigger: GTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAATCAAGTCTTGCCTTaGCTTGCATTTCTGAGATGC +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHNQVLP*LAFLRC
Trigger: GCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATT...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAAGATCCTCTATCATCTaGCGGGTGTTACTTATTCTC +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHIRSSII*RVLLIL
Trigger: GAGAATAAGTAACACCCGCAAGATGATAGAGGATCT...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAGATCCTCTATCATCTaGCGGGTGTTACTTATTCTC +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHRSSII*RVLLIL
Trigger: GAGAATAAGTAACACCCGCAAGATGATAGAGGATCT...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATGGGTTCACAGACTCTTaGTTTAAACCTGTCTCTGTT +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHGFTDS*FKPVSV
Trigger: AACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCC...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTCTGCATATGAGATCTaGGGGGCAATAACAGCATTT +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHSAYEI*GAITAF
Trigger: AAATGCTGTTATTGCCCCCAAGATCTCATATGCAGA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATCCAATTCAATGAATaGTTGTTCTGTGACGCGCAG +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHIQFNE*LFCDAQ
Trigger: CTGCGCGTCACAGAACAACAATTCATTGAATTGGAT...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATGTGTTTGGGAGATCTaGAAAAGCTGTCTGGAATTC +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHICVWEI*KSCLEF
Trigger: GAATTCCAGACAGCTTTTCAAGATCTCCCAAACACA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATTTACTCTTAACTTCTaGTTGTCACGAACCTCTCTG +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHIFTLNF*LSRTSL
Trigger: CAGAGAGGTTCGTGACAACAAGAAGTTAAGAGTAAA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTTTCATCCAATGTGTTaGGGAGATCTTGAAAAGCTG +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHFHPMC*GDLEKL
Trigger: CAGCTTTTCAAGATCTCCCAAACACATTGGATGAAA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp TCTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATTCAAGGAGTTCAATTTaGCTGAGTTTAGCAAATTCC +
Preference number: 5 (lower is better)
Translates to: SFSFNKSANFYSLERATHSRSSI*LSLANS
Trigger: GGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGA...ATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATAAATCTCCATATCTTCTaGACTTTCAAACACAAAGGC +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHINLHIF*TFKHKG
Trigger: GCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATT...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS-3UTR CAA 90 bp CTTTCTCTTTCAATAAATCTGCTAACTTTTATTCACTTGAGCGAGCGACACATATTCTTCATAAGTTCCTaGCACTTCTGTAACAATCTC +
Preference number: 5 (lower is better)
Translates to: LSLSINLLTFIHLSERHIFFISS*HFCNNL
Trigger: GAGATTGTTACAGAAGTGCAAGGAACTTATGAAGAA...TATGTGTCGCTCGCTCAAGTGAATAAAAGTTAGCAGATTTATTGAAAGAGAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS CAA 90 bp CCGGACGGCCGCGGCAGCGTCGGCAACGGGTTCGAGTTCTTTCTCTaGCTCGGGACCTCGGAGGAAGCATCTCTCGGGAGAGACCGCTTG +
Preference number: 6 (lower is better)
Translates to: PDGRGSVGNGFEFFL*LGTSEEASLGRDRL
Trigger: CAAGCGGTCTCTCCCGAGAGATGCTTCCTCCGAGGTCCCGAGCAAGAGAAAGAACTCGAACCCGTTGCCGACGCTGCCGCGGCCGTCCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS GCA 72 bp GCGGCAGCGTCGGCAACGGGTTCGAGTTCTTTCTCTTaGTCGGGACCTCGGAGGAAGCATCTCTCGGGAGAG +
Preference number: 6 (lower is better)
Translates to: AAASATGSSSFS*SGPRRKHLSGE
Trigger: CTCTCCCGAGAGATGCTTCCTCCGAGGTCCCGAGCAAGAGAAAGAACTCGAACCCGTTGCCGACGCTGCCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS CAA 72 bp CGCGGCAGCGTCGGCAACGGGTTCGAGTTCTTTCTCTaGCTCGGGACCTCGGAGGAAGCATCTCTCGGGAGA +
Preference number: 6 (lower is better)
Translates to: RGSVGNGFEFFL*LGTSEEASLGR
Trigger: TCTCCCGAGAGATGCTTCCTCCGAGGTCCCGAGCAAGAGAAAGAACTCGAACCCGTTGCCGACGCTGCCGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS CAA 90 bp CACAGATGTCATATGTTAAGAAGTTCTCCATGGCGATGCGGACGATaGAGCCCTCGACGAAGGTCCCGGACGGCCGCGGCAGCGTCGGCA +
Preference number: 6 (lower is better)
Translates to: HRCHMLRSSPWRCGR*SPRRRSRTAAAASA
Trigger: TGCCGACGCTGCCGCGGCCGTCCGGGACCTTCGTCGAGGGCTCAATCGTCCGCATCGCCATGGAGAACTTCTTAACATATGACATCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS CAA 72 bp CATATGTTAAGAAGTTCTCCATGGCGATGCGGACGATaGAGCCCTCGACGAAGGTCCCGGACGGCCGCGGCA +
Preference number: 6 (lower is better)
Translates to: HMLRSSPWRCGR*SPRRRSRTAAA
Trigger: TGCCGCGGCCGTCCGGGACCTTCGTCGAGGGCTCAATCGTCCGCATCGCCATGGAGAACTTCTTAACATATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS GCA 72 bp CACAGATGTCATATGTTAAGAAGTTCTCCATGGCGATaGGGACGATTGAGCCCTCGACGAAGGTCCCGGACG +
Preference number: 6 (lower is better)
Translates to: HRCHMLRSSPWR*GRLSPRRRSRT
Trigger: CGTCCGGGACCTTCGTCGAGGGCTCAATCGTCCGCATCGCCATGGAGAACTTCTTAACATATGACATCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS CAA 72 bp AACCCAACCTTATCTGCACGTCCCATGAAAGCAGGTTaGCCTGCGAGTCCGAGGCAAATGGCACACACGATG +
Preference number: 6 (lower is better)
Translates to: NPTLSARPMKAG*PASPRQMAHTM
Trigger: CATCGTGTGTGCCATTTGCCTCGGACTCGCAGGCAAACCTGCTTTCATGGGACGTGCAGATAAGGTTGGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS TCA 72 bp GCCTGCGAGTCCGAGGCAAATGGCACACACGATGCTTaGCTTCCCTGTTCCATTGGCTCCAATGATCATGTT +
Preference number: 6 (lower is better)
Translates to: ACESEANGTHDA*LPCSIGSNDHV
Trigger: AACATGATCATTGGAGCCAATGGAACAGGGAAGTCAAGCATCGTGTGTGCCATTTGCCTCGGACTCGCAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS CAA 90 bp AGTCCGAGGCAAATGGCACACACGATGCTTGACTTCCCTGTTCCATaGGCTCCAATGATCATGTTCAGATGGGGCCCAGGAGACACTTCA +
Preference number: 6 (lower is better)
Translates to: SPRQMAHTMLDFPVP*APMIMFRWGPGDTS
Trigger: TGAAGTGTCTCCTGGGCCCCATCTGAACATGATCATTGGAGCCAATGGAACAGGGAAGTCAAGCATCGTGTGTGCCATTTGCCTCGGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS CAA 90 bp TTCACGAAAAACCCAACCTTATCTGCACGTCCCATGAAAGCAGGTTaGCCTGCGAGTCCGAGGCAAATGGCACACACGATGCTTGACTTC +
Preference number: 6 (lower is better)
Translates to: FTKNPTLSARPMKAG*PASPRQMAHTMLDF
Trigger: GAAGTCAAGCATCGTGTGTGCCATTTGCCTCGGACTCGCAGGCAAACCTGCTTTCATGGGACGTGCAGATAAGGTTGGGTTTTTCGTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS TCA 72 bp TCTTCACGAAAAACCCAACCTTATCTGCACGTCCCATaGAAGCAGGTTTGCCTGCGAGTCCGAGGCAAATGG +
Preference number: 6 (lower is better)
Translates to: SSRKTQPYLHVP*KQVCLRVRGKW
Trigger: CCATTTGCCTCGGACTCGCAGGCAAACCTGCTTTCATGGGACGTGCAGATAAGGTTGGGTTTTTCGTGAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 72 bp CAAATGGCACACACGATGCTTGACTTCCCTGTTCCATaGGCTCCAATGATCATGTTCAGATGGGGCCCAGGA +
Preference number: 6 (lower is better)
Translates to: QMAHTMLDFPVP*APMIMFRWGPG
Trigger: TCCTGGGCCCCATCTGAACATGATCATTGGAGCCAATGGAACAGGGAAGTCAAGCATCGTGTGTGCCATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS TCA 72 bp TCGGTTGACTTTTCTTTGATTCGAACTTCCAAAGTGTaGCGCTGCCGGTCAATCTCCTCAATCCGCCGTGTC +
Preference number: 6 (lower is better)
Translates to: SVDFSLIRTSKV*RCRSISSIRRV
Trigger: GACACGGCGGATTGAGGAGATTGACCGGCAGCGTCACACTTTGGAAGTTCGAATCAAAGAAAAGTCAACCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS GCA 72 bp TCAATGATCTCGCCTTCACATAAGGCTTTCTCCTCCTaGACACGCCTCAGATCATTTGTGACGGTGTCGATC +
Preference number: 6 (lower is better)
Translates to: SMISPSHKAFSS*TRLRSFVTVSI
Trigger: GATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CCA 72 bp ACACTTCACAGATGTCATATGTTAAGAAGTTCTCCATaGCGATGCGGACGATTGAGCCCTCGACGAAGGTCC +
Preference number: 6 (lower is better)
Translates to: TLHRCHMLRSSP*RCGRLSPRRRS
Trigger: GGACCTTCGTCGAGGGCTCAATCGTCCGCATCGCCATGGAGAACTTCTTAACATATGACATCTGTGAAGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
CDS CCA 72 bp GAGCTGTGTCCATTTGGAATGGTGGGTACTTGTGTCTaGAATTCTTGTGGAACAGCTTGGTCAGCACTCAGG +
Preference number: 6 (lower is better)
Translates to: ELCPFGMVGTCV*NSCGTAWSALR
Trigger: CCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACACAAGTACCCACCATTCCAAATGGACACAGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS CAA 72 bp GGTGGGTACTTGTGTCTGGAATTCTTGTGGAACAGCTaGGTCAGCACTCAGGTTGCATACTTGCCTAGCTTT +
Preference number: 6 (lower is better)
Translates to: GGYLCLEFLWNS*VSTQVAYLPSF
Trigger: AAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACACAAGTACCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS GCA 72 bp AGGTTCTCGCAGTTTTCCGCAGTCTTGAGCTCACTCTaGAGATCCTCTATCATCTTGCGGGTGTTACTTATT +
Preference number: 6 (lower is better)
Translates to: RFSQFSAVLSSL*RSSIILRVLLI
Trigger: AATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 72 bp TCCATTTGGAATGGTGGGTACTTGTGTCTGGAATTCTaGTGGAACAGCTTGGTCAGCACTCAGGTTGCATAC +
Preference number: 6 (lower is better)
Translates to: SIWNGGYLCLEF*WNSLVSTQVAY
Trigger: GTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACACAAGTACCCACCATTCCAAATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS GCA 72 bp TTTAAACCTGTCTCTGTTATTTCTCAGCCACAAGACTaGATCATACGTATCCCGGTACCGCTGTCTCAGCTT +
Preference number: 6 (lower is better)
Translates to: FKPVSVISQPQD*IIRIPVPLSQL
Trigger: AAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CCA 72 bp ATTTGGAATGGTGGGTACTTGTGTCTGGAATTCTTGTaGAACAGCTTGGTCAGCACTCAGGTTGCATACTTG +
Preference number: 6 (lower is better)
Translates to: IWNGGYLCLEFL*NSLVSTQVAYL
Trigger: CAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACACAAGTACCCACCATTCCAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS CCA 72 bp GTTTGGGAGATCTTGAAAAGCTGTCTGGAATTCTTGTaGAACAGCTTGGTCAGCACTCAGGTTGCATACTTG +
Preference number: 6 (lower is better)
Translates to: VWEILKSCLEFL*NSLVSTQVAYL
Trigger: CAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACAGCTTTTCAAGATCTCCCAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 72 bp TTGTGGAACAGCTTGGTCAGCACTCAGGTTGCATACTaGCCTAGCTTTCTTCATAAGTTCCTTGCACTTCTG +
Preference number: 6 (lower is better)
Translates to: LWNSLVSTQVAY*PSFLHKFLALL
Trigger: CAGAAGTGCAAGGAACTTATGAAGAAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 90 bp ACTTGTGTCTGGAATTCTTGTGGAACAGCTTGGTCAGCACTCAGGTaGCATACTTGCCTAGCTTTCTTCATAAGTTCCTTGCACTTCTGT +
Preference number: 6 (lower is better)
Translates to: TCVWNSCGTAWSALR*HTCLAFFISSLHFC
Trigger: ACAGAAGTGCAAGGAACTTATGAAGAAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACACAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS CAA 90 bp ATTTGGAATGGTGGGTACTTGTGTCTGGAATTCTTGTGGAACAGCTaGGTCAGCACTCAGGTTGCATACTTGCCTAGCTTTCTTCATAAG +
Preference number: 6 (lower is better)
Translates to: IWNGGYLCLEFLWNS*VSTQVAYLPSFLHK
Trigger: CTTATGAAGAAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACACAAGTACCCACCATTCCAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS CAA 90 bp TTATCCTTCGCCGACGCCTTTGAAAAGCCTTTAAATTCCATCGGTTaGGCTCCAGCATATGAGGACCATTGTAGACAAACAACACTGTCA +
Preference number: 6 (lower is better)
Translates to: LSFADAFEKPLNSIG*APAYEDHCRQTTLS
Trigger: TGACAGTGTTGTTTGTCTACAATGGTCCTCATATGCTGGAGCCAAACCGATGGAATTTAAAGGCTTTTCAAAGGCGTCGGCGAAGGATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 90 bp AAAGCTGTCTGGAATTCTTGTGGAACAGCTTGGTCAGCACTCAGGTaGCATACTTGCCTAGCTTTCTTCATAAGTTCCTTGCACTTCTGT +
Preference number: 6 (lower is better)
Translates to: KAVWNSCGTAWSALR*HTCLAFFISSLHFC
Trigger: ACAGAAGTGCAAGGAACTTATGAAGAAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACAGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 90 bp GTTTGGGAGATCTTGAAAAGCTGTCTGGAATTCTTGTGGAACAGCTaGGTCAGCACTCAGGTTGCATACTTGCCTAGCTTTCTTCATAAG +
Preference number: 6 (lower is better)
Translates to: VWEILKSCLEFLWNS*VSTQVAYLPSFLHK
Trigger: CTTATGAAGAAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACAGCTTTTCAAGATCTCCCAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS TCA 72 bp TCCAGCTCTTCATTCTGCTTGACTGTTAATGCCTGCTaGAGTTCCTTAATCTGTCTGTCCTTCCGTTCAATC +
Preference number: 6 (lower is better)
Translates to: SSSSFCLTVNAC*SSLICLSFRSI
Trigger: GATTGAACGGAAGGACAGACAGATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS TCA 72 bp TTGAGTACTCCTCAACCACCGAAGGATTCAGTCCTGTaGAGCACGAAGCTCTTGACCTTTCTTCAGTTAATA +
Preference number: 6 (lower is better)
Translates to: LSTPQPPKDSVL*STKLLTFLQLI
Trigger: TATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCGGTGGTTGAGGAGTACTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087556.7
CDS TCA 72 bp AGTACTCCTCAACCACTACCGAAGGATTCAGTCCTGTaGAGCACGAAGCTCTTGACCTTTCTTCAGTTAATA +
Preference number: 6 (lower is better)
Translates to: STPQPLPKDSVL*STKLLTFLQLI
Trigger: TATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCGGTAGTGGTTGAGGAGTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS GCA 72 bp TCCTCTATCATCTTGCGGGTGTTACTTATTCTCTTCTaGCGGTCCAGCTCTTCATTCTGCTTGACTGTTAAT +
Preference number: 6 (lower is better)
Translates to: SSIILRVLLILF*RSSSSFCLTVN
Trigger: ATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 72 bp TGGAATTCTTGTGGAACAGCTTGGTCAGCACTCAGGTaGCATACTTGCCTAGCTTTCTTCATAAGTTCCTTG +
Preference number: 6 (lower is better)
Translates to: WNSCGTAWSALR*HTCLAFFISSL
Trigger: CAAGGAACTTATGAAGAAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 72 bp ATCTTGAAAAGCTGTCTGGAATTCTTGTGGAACAGCTaGGTCAGCACTCAGGTTGCATACTTGCCTAGCTTT +
Preference number: 6 (lower is better)
Translates to: ILKSCLEFLWNS*VSTQVAYLPSF
Trigger: AAAGCTAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACAGCTTTTCAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 90 bp GCTTTCTTCATAAGTTCCTTGCACTTCTGTAACAATCTCTGTCTGTaGTCATCCAATTCAATGAATTGTTGTTCTGTGACGCGCAGCTGG +
Preference number: 6 (lower is better)
Translates to: AFFISSLHFCNNLCL*SSNSMNCCSVTRSW
Trigger: CCAGCTGCGCGTCACAGAACAACAATTCATTGAATTGGATGACAACAGACAGAGATTGTTACAGAAGTGCAAGGAACTTATGAAGAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS TCA 72 bp TCATCGACTACTCTGAACGGACATCTGTTAAGCTCCTaGAGTGCCATCAAGTATAGCATAGTAGAAACACTT +
Preference number: 6 (lower is better)
Translates to: SSTTLNGHLLSS*SAIKYSIVETL
Trigger: AAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS TCA 72 bp AATGCATCGATTTCATCCAATGTGTTTGGGAGATCTTaGAAAGCTGTCTGGAATTCTTGTGGAACAGCTTGG +
Preference number: 6 (lower is better)
Translates to: NASISSNVFGRS*KAVWNSCGTAW
Trigger: CCAAGCTGTTCCACAAGAATTCCAGACAGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CCA 72 bp ATGTTTAAGGCTGCAACCTGTTCTTCCACTATCTTCTaGGTTACAGGCTTTTTGTTGATGAACCAAAAGGAC +
Preference number: 6 (lower is better)
Translates to: MFKAATCSSTIF*VTGFLLMNQKD
Trigger: GTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 90 bp AAGTCATTCAGAGATCTTGAAGGGGCTTTGTCTGCATATGAGATCTaGGGGGCAATAACAGCATTTACTCTTAACTTCTTGTTGTCACGA +
Preference number: 6 (lower is better)
Translates to: KSFRDLEGALSAYEI*GAITAFTLNFLLSR
Trigger: TCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 90 bp ATAAGATTTCCAGAAGTCCTGAACAGTTCAATTTCAACCAAACCTTaGGAACATCCTCTCTTCACGAAAAACCCAACCTTATCTGCACGT +
Preference number: 6 (lower is better)
Translates to: IRFPEVLNSSISTKP*EHPLFTKNPTLSAR
Trigger: ACGTGCAGATAAGGTTGGGTTTTTCGTGAAGAGAGGATGTTCCAAAGGTTTGGTTGAAATTGAACTGTTCAGGACTTCTGGAAATCTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087556.7
ENSMUST00000223934.2
ENSMUST00000226111.2
CDS CAA 90 bp TTGACCTTTCTTCAGTTAATAATGCATCGATTTCATCCAATGTGTTaGGGAGATCTTGAAAAGCTGTCTGGAATTCTTGTGGAACAGCTT +
Preference number: 6 (lower is better)
Translates to: LTFLQLIMHRFHPMC*GDLEKLSGILVEQL
Trigger: AAGCTGTTCCACAAGAATTCCAGACAGCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000223934.2
ENSMUST00000226111.2