Pregenerated sensors for SMC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034349Ensembl transcript IDs: ENSMUST00000042901.15, ENSMUST00000107803.7, ENSMUST00000136502.8, ENSMUST00000148385.8, ENSMUST00000149174.3, ENSMUST00000195525.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTCCACCGCCACTCATTGTACCTGACTGTTCTATGATCTGTCCCTaGAGAGTCACTACTCTCCAGCGTCTGTCTCTTTGGTACGCTACT | + |
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Preference number: 1 (lower is better) Translates to: LPPPLIVPDCSMICP*RVTTLQRLSLWYAT Trigger: AGTAGCGTACCAAAGAGACAGACGCTGGAGAGTAGTGACTCTGCAGGGACAGATCATAGAACAGTCAGGTACAATGAGTGGCGGTGGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000148385.8 ENSMUST00000149174.3 ENSMUST00000195525.2 |
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| 3UTR GCA 90 bp | ACGTTAGCTTCCAGTTCTTTAATTTGTACACACAGATACTCTTCTTaGTCTGATAAGCCCTGGATGCTTGCAGCGAACTTTTCCAGTGTA | + |
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Preference number: 1 (lower is better) Translates to: TLASSSLICTHRYSS*SDKPWMLAANFSSV Trigger: TACACTGGAAAAGTTCGCTGCAAGCATCCAGGGCTTATCAGAGCAAGAAGAGTATCTGTGTGTACAAATTAAAGAACTGGAAGCTAACGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CCA 90 bp | TCATTTGTTATAGACTCTGGATTCTTGATTGCCTCAAGCTCCTCCTaGCTTAGAACTGCTACTGTCTCAACAGGATTATCTTCAACAGGA | + |
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Preference number: 1 (lower is better) Translates to: SFVIDSGFLIASSSS*LRTATVSTGLSSTG Trigger: TCCTGTTGAAGATAATCCTGTTGAGACAGTAGCAGTTCTAAGCCAGGAGGAGCTTGAGGCAATCAAGAATCCAGAGTCTATAACAAATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR GCA 90 bp | GTCTGGCCTTTGGGTTTCATCATAGCAATCTGTTCAACTTCACCCTaGAAGATTAAAAATCGATTATGGTCTAAGTCAATGCCATGGCTT | + |
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Preference number: 1 (lower is better) Translates to: VWPLGFIIAICSTSP*KIKNRLWSKSMPWL Trigger: AAGCCATGGCATTGACTTAGACCATAATCGATTTTTAATCTTGCAGGGTGAAGTTGAACAGATTGCTATGATGAAACCCAAAGGCCAGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| 3UTR CCA 90 bp | TCTTTAATTTGTACACACAGATACTCTTCTTGCTCTGATAAGCCCTaGATGCTTGCAGCGAACTTTTCCAGTGTATTTCTCATGTCTCGT | + |
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Preference number: 1 (lower is better) Translates to: SLICTHRYSSCSDKP*MLAANFSSVFLMSR Trigger: ACGAGACATGAGAAATACACTGGAAAAGTTCGCTGCAAGCATCCAGGGCTTATCAGAGCAAGAAGAGTATCTGTGTGTACAAATTAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR GCA 90 bp | ATTGCTACTTGGGCCTTAGTAATAGCAGAAGCACATTCATCAAGCTaGTTATTTATCGTGTCAAGTTTGTTTTGCTGGGCCTTGAGTTTT | + |
|
Preference number: 1 (lower is better) Translates to: IATWALVIAEAHSSS*LFIVSSLFCWALSF Trigger: AAAACTCAAGGCCCAGCAAAACAAACTTGACACGATAAATAAGCAGCTTGATGAATGTGCTTCTGCTATTACTAAGGCCCAAGTAGCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CCA 90 bp | TCCTGTGCCTTTTTAAGATTTCTGTCAGCAGTCTTGATTGCTACTTaGGCCTTAGTAATAGCAGAAGCACATTCATCAAGCTGCTTATTT | + |
|
Preference number: 1 (lower is better) Translates to: SCAFLRFLSAVLIAT*ALVIAEAHSSSCLF Trigger: AAATAAGCAGCTTGATGAATGTGCTTCTGCTATTACTAAGGCCCAAGTAGCAATCAAGACTGCTGACAGAAATCTTAAAAAGGCACAGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CCA 90 bp | ATTATATCTTCTAAATACTCAAGCATACCTTCATCATGTTCAGTCTaGCCTTTGGGTTTCATCATAGCAATCTGTTCAACTTCACCCTGC | + |
|
Preference number: 1 (lower is better) Translates to: IISSKYSSIPSSCSV*PLGFIIAICSTSPC Trigger: GCAGGGTGAAGTTGAACAGATTGCTATGATGAAACCCAAAGGCCAGACTGAACATGATGAAGGTATGCTTGAGTATTTAGAAGATATAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CCA 90 bp | TCACCCTGCAAGATTAAAAATCGATTATGGTCTAAGTCAATGCCATaGCTTCTAAGGAGATTTCCAACATCTTTAAACGTCTTCTTCTTC | + |
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Preference number: 1 (lower is better) Translates to: SPCKIKNRLWSKSMP*LLRRFPTSLNVFFF Trigger: GAAGAAGAAGACGTTTAAAGATGTTGGAAATCTCCTTAGAAGCCATGGCATTGACTTAGACCATAATCGATTTTTAATCTTGCAGGGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| 3UTR CCA 90 bp | ATAGCAATCTGTTCAACTTCACCCTGCAAGATTAAAAATCGATTATaGTCTAAGTCAATGCCATGGCTTCTAAGGAGATTTCCAACATCT | + |
|
Preference number: 1 (lower is better) Translates to: IAICSTSPCKIKNRL*SKSMPWLLRRFPTS Trigger: AGATGTTGGAAATCTCCTTAGAAGCCATGGCATTGACTTAGACCATAATCGATTTTTAATCTTGCAGGGTGAAGTTGAACAGATTGCTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| 3UTR-3UTR TCA 90 bp | GTACCTGACTGTTCTATGATCTGTCCCTGCAGAGTCACTACTCTCCAGCGTCTGTACCTGACTGTTCTATaGTCTGTCCCTGCAGAGTCA | + |
|
Preference number: 2 (lower is better) Translates to: VPDCSMICPCRVTTLQRLYLTVL*SVPAES Trigger: TGACTCTGCAGGGACAGATCATAGAACAGTCAGGTA...CAGACGCTGGAGAGTAGTGACTCTGCAGGGACAGATCATAGAACAGTCAGGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000148385.8 ENSMUST00000149174.3 ENSMUST00000195525.2 |
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| 3UTR CAA 90 bp | GAGATTTCATCGATAACCGAAGAGCCCATCCTTCCTCTCATCACCTaGCTTCCACCGCCACTCATTGTACCTGACTGTTCTATGATCTGT | + |
|
Preference number: 2 (lower is better) Translates to: EISSITEEPILPLIT*LPPPLIVPDCSMIC Trigger: ACAGATCATAGAACAGTCAGGTACAATGAGTGGCGGTGGAAGCAAGGTGATGAGAGGAAGGATGGGCTCTTCGGTTATCGATGAAATCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000148385.8 ENSMUST00000149174.3 ENSMUST00000195525.2 |
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| 3UTR CAA 90 bp | TATGATCTGTCCCTGCAGAGTCACTACTCTCCAGCGTCTGTCTCTTaGGTACGCTACTCTTGTAGCTTGATCCAAATTGTTAGCCACCAA | + |
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Preference number: 2 (lower is better) Translates to: YDLSLQSHYSPASVS*VRYSCSLIQIVSHQ Trigger: TTGGTGGCTAACAATTTGGATCAAGCTACAAGAGTAGCGTACCAAAGAGACAGACGCTGGAGAGTAGTGACTCTGCAGGGACAGATCATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000148385.8 ENSMUST00000149174.3 ENSMUST00000195525.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGATTTCATCGATAACCGAAGAGCCCATCCTTCCTCTCATCACCTTGCTTCCGCTACTCTTGTAGCTTaGTCCAAATTGTTAGCCACC | + |
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Preference number: 2 (lower is better) Translates to: RDFIDNRRAHPSSHHLASATLVA*SKLLAT Trigger: GGTGGCTAACAATTTGGATCAAGCTACAAGAGTAGC...GGAAGCAAGGTGATGAGAGGAAGGATGGGCTCTTCGGTTATCGATGAAATCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000148385.8 ENSMUST00000149174.3 ENSMUST00000195525.2 |
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| 3UTR-3UTR CCA 90 bp | AGCGATGGCTCCAAGGTTTGGTTTCATTTCACGACACTGAGCTTCCAAAAGTGCCTCTGTAGGCGGTTCTaGATACATAGAAGTTGCTGT | + |
|
Preference number: 2 (lower is better) Translates to: SDGSKVWFHFTTLSFQKCLCRRF*IHRSCC Trigger: ACAGCAACTTCTATGTATCCAGAACCGCCTACAGAG...GCACTTTTGGAAGCTCAGTGTCGTGAAATGAAACCAAACCTTGGAGCCATCGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR CCA 90 bp | TCATCATGTTCAGTCTGGCCTTTGGGTTTCATCATAGCAATCTGTTCAACTTCAGGCTGGAGGTGGGGGTaGAGGGATACTATTCAAAAT | + |
|
Preference number: 2 (lower is better) Translates to: SSCSVWPLGFIIAICSTSGWRWG*RDTIQN Trigger: ATTTTGAATAGTATCCCTCCACCCCCACCTCCAGCC...TGAAGTTGAACAGATTGCTATGATGAAACCCAAAGGCCAGACTGAACATGATGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CAA 90 bp | TTTGTACACACAGATACTCTTCTTGCTCTGATAAGCCCTGGATGCTaGCAGCGAACTTTTCCAGTGTATTTCTCATGTCTCGTTCACTGT | + |
|
Preference number: 2 (lower is better) Translates to: FVHTDTLLALISPGC*QRTFPVYFSCLVHC Trigger: ACAGTGAACGAGACATGAGAAATACACTGGAAAAGTTCGCTGCAAGCATCCAGGGCTTATCAGAGCAAGAAGAGTATCTGTGTGTACAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR TCA 90 bp | TTATTTACCTCTTCTACAGAGATTTCATCGATAACCGAAGAGCCCATCCTTCCTTACCTGACTGTTCTATaGTCTGTCCCTGCAGAGTCA | + |
|
Preference number: 2 (lower is better) Translates to: LFTSSTEISSITEEPILPYLTVL*SVPAES Trigger: TGACTCTGCAGGGACAGATCATAGAACAGTCAGGTA...AGGAAGGATGGGCTCTTCGGTTATCGATGAAATCTCTGTAGAAGAGGTAAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| 3UTR-3UTR TCA 90 bp | CCTCAAGCTCCTCCTGGCTTAGAACTGCTACTGTCTCAACAGGATTATCTTCAATTGTGTTTATATCCTTaGTTGCAGCTTTCCTCTCCT | + |
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Preference number: 2 (lower is better) Translates to: PQAPPGLELLLSQQDYLQLCLYP*LQLSSP Trigger: AGGAGAGGAAAGCTGCAATCAAGGATATAAACACAA...TTGAAGATAATCCTGTTGAGACAGTAGCAGTTCTAAGCCAGGAGGAGCTTGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR GCA 90 bp | ACATTCATCAAGCTGCTTATTTATCGTGTCAAGTTTGTTTTGCTGGGCCTTGAGTGTGGTAGACAGAAGTaGTATCTCTGTAGGCGGTTC | + |
|
Preference number: 2 (lower is better) Translates to: TFIKLLIYRVKFVLLGLECGRQK*YLCRRF Trigger: GAACCGCCTACAGAGATAGCACTTCTGTCTACCACA...CTCAAGGCCCAGCAAAACAAACTTGACACGATAAATAAGCAGCTTGATGAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR GCA 90 bp | CTCTTCTACAGAGATTTCATCGATAACCGAAGAGCCCATCCTTCCTCTCATCACGTTTATATCCTTGATTaGAGCTTTCCTCTCCTTGAG | + |
|
Preference number: 2 (lower is better) Translates to: LFYRDFIDNRRAHPSSHHVYILD*SFPLLE Trigger: CTCAAGGAGAGGAAAGCTGCAATCAAGGATATAAAC...GTGATGAGAGGAAGGATGGGCTCTTCGGTTATCGATGAAATCTCTGTAGAAGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR GCA 90 bp | CCTCAAGCTCCTCCTGGCTTAGAACTGCTACTGTCTCAACAGGATTATCTTCAAATTGCTTGTTTAGAATaGCTTTCCAACTGGGATTCC | + |
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Preference number: 2 (lower is better) Translates to: PQAPPGLELLLSQQDYLQIACLE*LSNWDS Trigger: GGAATCCCAGTTGGAAAGGCATTCTAAACAAGCAAT...TTGAAGATAATCCTGTTGAGACAGTAGCAGTTCTAAGCCAGGAGGAGCTTGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR TCA 90 bp | TCTACAGAGATTTCATCGATAACCGAAGAGCCCATCCTTCCTCTCATCACCTTGCTCCAGCATAGGACTTaGAGTTTTGGTTTACAATAT | + |
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Preference number: 2 (lower is better) Translates to: STEISSITEEPILPLITLLQHRT*SFGLQY Trigger: ATATTGTAAACCAAAACTTCAAGTCCTATGCTGGAG...CAAGGTGATGAGAGGAAGGATGGGCTCTTCGGTTATCGATGAAATCTCTGTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR TCA 90 bp | TCAATGCCATGGCTTCTAAGGAGATTTCCAACATCTTTAAACGTCTTCTTCTTCGCTACTCTTGTAGCTTaGTCCAAATTGTTAGCCACC | + |
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Preference number: 2 (lower is better) Translates to: SMPWLLRRFPTSLNVFFFATLVA*SKLLAT Trigger: GGTGGCTAACAATTTGGATCAAGCTACAAGAGTAGC...GAAGAAGAAGACGTTTAAAGATGTTGGAAATCTCCTTAGAAGCCATGGCATTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| 3UTR CAA 90 bp | TCATCAAGCTGCTTATTTATCGTGTCAAGTTTGTTTTGCTGGGCCTaGAGTTTTCGGTTGTTGATATCTATGATGGTATTGTGTAGCCGT | + |
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Preference number: 2 (lower is better) Translates to: SSSCLFIVSSLFCWA*SFRLLISMMVLCSR Trigger: ACGGCTACACAATACCATCATAGATATCAACAACCGAAAACTCAAGGCCCAGCAAAACAAACTTGACACGATAAATAAGCAGCTTGATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CAA 90 bp | ATCCTGTGCCTTTTTAAGATTTCTGTCAGCAGTCTTGATTGCTACTaGGGCCTTAGTAATAGCAGAAGCACATTCATCAAGCTGCTTATT | + |
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Preference number: 2 (lower is better) Translates to: ILCLFKISVSSLDCY*GLSNSRSTFIKLLI Trigger: AATAAGCAGCTTGATGAATGTGCTTCTGCTATTACTAAGGCCCAAGTAGCAATCAAGACTGCTGACAGAAATCTTAAAAAGGCACAGGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CAA 90 bp | TTTATCGTGTCAAGTTTGTTTTGCTGGGCCTTGAGTTTTCGGTTGTaGATATCTATGATGGTATTGTGTAGCCGTTTAATCTCAGCTTCA | + |
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Preference number: 2 (lower is better) Translates to: FIVSSLFCWALSFRL*ISMMVLCSRLISAS Trigger: TGAAGCTGAGATTAAACGGCTACACAATACCATCATAGATATCAACAACCGAAAACTCAAGGCCCAGCAAAACAAACTTGACACGATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CAA 90 bp | TTATTTATCGTGTCAAGTTTGTTTTGCTGGGCCTTGAGTTTTCGGTaGTTGATATCTATGATGGTATTGTGTAGCCGTTTAATCTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: LFIVSSLFCWALSFR*LISMMVLCSRLISA Trigger: AGCTGAGATTAAACGGCTACACAATACCATCATAGATATCAACAACCGAAAACTCAAGGCCCAGCAAAACAAACTTGACACGATAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CAA 90 bp | AGCGAATTGTTTCTAGTTGTTGTCTCATTTATGACAGTCTTACTCTaGGCAGGTACACTTTTCAGCTCTTCAACCTTTTCTTTATCTTTT | + |
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Preference number: 2 (lower is better) Translates to: SELFLVVVSFMTVLL*AGTLFSSSTFSLSF Trigger: AAAAGATAAAGAAAAGGTTGAAGAGCTGAAAAGTGTACCTGCCAAGAGTAAGACTGTCATAAATGAGACAACAACTAGAAACAATTCGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR CAA 90 bp | AGCCCATCCTTCCTCTCATCACCTTGCTTCCACCGCCACTCATTGTACCTGACTCGCTACTCTTGTAGCTaGATCCAAATTGTTAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: SPSFLSSPCFHRHSLYLTRYSCS*IQIVSH Trigger: GTGGCTAACAATTTGGATCAAGCTACAAGAGTAGCG...AGTCAGGTACAATGAGTGGCGGTGGAAGCAAGGTGATGAGAGGAAGGATGGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000148385.8 ENSMUST00000149174.3 ENSMUST00000195525.2 |
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| 3UTR GCA 72 bp | CCACTCATTGTACCTGACTGTTCTATGATCTGTCCCTaGAGAGTCACTACTCTCCAGCGTCTGTCTCTTTGG | + |
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Preference number: 3 (lower is better) Translates to: PLIVPDCSMICP*RVTTLQRLSLW Trigger: CCAAAGAGACAGACGCTGGAGAGTAGTGACTCTGCAGGGACAGATCATAGAACAGTCAGGTACAATGAGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000148385.8 ENSMUST00000149174.3 ENSMUST00000195525.2 |
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| 3UTR-3UTR CAA 90 bp | AGTAGAGGGGAGTGGGCTTGTAGTGATGAAGAGCAAACACTAAGGCCAAGGAACCGCTACTCTTGTAGCTaGATCCAAATTGTTAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: SRGEWACSDEEQTLRPRNRYSCS*IQIVSH Trigger: GTGGCTAACAATTTGGATCAAGCTACAAGAGTAGCG...GTTCCTTGGCCTTAGTGTTTGCTCTTCATCACTACAAGCCCACTCCCCTCTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR CAA 90 bp | TCTTCTACAGAGATTTCATCGATAACCGAAGAGCCCATCCTTCCTCTCATCACCCGCTACTCTTGTAGCTaGATCCAAATTGTTAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: SSTEISSITEEPILPLITRYSCS*IQIVSH Trigger: GTGGCTAACAATTTGGATCAAGCTACAAGAGTAGCG...GGTGATGAGAGGAAGGATGGGCTCTTCGGTTATCGATGAAATCTCTGTAGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000148385.8 ENSMUST00000149174.3 ENSMUST00000195525.2 |
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| 3UTR-3UTR CAA 90 bp | CTCTTCTACAGAGATTTCATCGATAACCGAAGAGCCCATCCTTCCTCTCATCACTGTTCAGTCTGGCCTTaGGGTTTCATCATAGCAATC | + |
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Preference number: 3 (lower is better) Translates to: LFYRDFIDNRRAHPSSHHCSVWP*GFIIAI Trigger: GATTGCTATGATGAAACCCAAAGGCCAGACTGAACA...GTGATGAGAGGAAGGATGGGCTCTTCGGTTATCGATGAAATCTCTGTAGAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| 3UTR-3UTR CAA 90 bp | AGTAGAGGGGAGTGGGCTTGTAGTGATGAAGAGCAAACACTAAGGCCAAGGAACTTTGTGTTTATATCCTaGATTGCAGCTTTCCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: SRGEWACSDEEQTLRPRNFVFIS*IAAFLS Trigger: GGAGAGGAAAGCTGCAATCAAGGATATAAACACAAA...GTTCCTTGGCCTTAGTGTTTGCTCTTCATCACTACAAGCCCACTCCCCTCTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR GCA 72 bp | TTGCGTCTGAGGGAGCTTTGTGTTTATATCCTTGATTaGAGCTTTCCTCTCCTTGAGAGTCTCAGAAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: LRLRELCVYILD*SFPLLESLRSC Trigger: ACAGCTTCTGAGACTCTCAAGGAGAGGAAAGCTGCAATCAAGGATATAAACACAAAGCTCCCTCAGACGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR TCA 72 bp | CAGCGTCTGTCTCTTTGGTACGCTACTCTTGTAGCTTaGTCCAAATTGTTAGCCACCAAGGTATCTCGTAAA | + |
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Preference number: 3 (lower is better) Translates to: QRLSLWYATLVA*SKLLATKVSRK Trigger: TTTACGAGATACCTTGGTGGCTAACAATTTGGATCAAGCTACAAGAGTAGCGTACCAAAGAGACAGACGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000148385.8 ENSMUST00000149174.3 ENSMUST00000195525.2 |
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| 3UTR GCA 72 bp | ACGTCTTCTTCTTCCCACTTATGTGGTAGACAGAAGTaGTATCTCTGTAGGCGGTTCTGGATACATAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: TSSSSHLCGRQK*YLCRRFWIHRS Trigger: ACTTCTATGTATCCAGAACCGCCTACAGAGATAGCACTTCTGTCTACCACATAAGTGGGAAGAAGAAGACGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR GCA 72 bp | CACACAGATACTCTTCTTGCTCTGATAAGCCCTGGATaGTTGCAGCGAACTTTTCCAGTGTATTTCTCATGT | + |
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Preference number: 3 (lower is better) Translates to: HTDTLLALISPG*LQRTFPVYFSC Trigger: ACATGAGAAATACACTGGAAAAGTTCGCTGCAAGCATCCAGGGCTTATCAGAGCAAGAAGAGTATCTGTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CCA 72 bp | TGTACACACAGATACTCTTCTTGCTCTGATAAGCCCTaGATGCTTGCAGCGAACTTTTCCAGTGTATTTCTC | + |
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Preference number: 3 (lower is better) Translates to: CTHRYSSCSDKP*MLAANFSSVFL Trigger: GAGAAATACACTGGAAAAGTTCGCTGCAAGCATCCAGGGCTTATCAGAGCAAGAAGAGTATCTGTGTGTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CCA 72 bp | ATAGACTCTGGATTCTTGATTGCCTCAAGCTCCTCCTaGCTTAGAACTGCTACTGTCTCAACAGGATTATCT | + |
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Preference number: 3 (lower is better) Translates to: IDSGFLIASSSS*LRTATVSTGLS Trigger: AGATAATCCTGTTGAGACAGTAGCAGTTCTAAGCCAGGAGGAGCTTGAGGCAATCAAGAATCCAGAGTCTAT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR CAA 90 bp | AGCGATGGCTCCAAGGTTTGGTTTCATTTCACGACACTGAGCTTCCAAAAGTGCTTTAGACCTTATTTTTaGTGCTCGATAGCCAAACAC | + |
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Preference number: 3 (lower is better) Translates to: SDGSKVWFHFTTLSFQKCFRPYF*CSIAKH Trigger: GTGTTTGGCTATCGAGCACAAAAAATAAGGTCTAAA...GCACTTTTGGAAGCTCAGTGTCGTGAAATGAAACCAAACCTTGGAGCCATCGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR CAA 90 bp | AGCGATGGCTCCAAGGTTTGGTTTCATTTCACGACACTGAGCTTCCAAAAGTGCTTGGATTTGCATTGCTaGTTTAGAATGCCTTTCCAA | + |
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Preference number: 3 (lower is better) Translates to: SDGSKVWFHFTTLSFQKCLDLHC*FRMPFQ Trigger: TTGGAAAGGCATTCTAAACAAGCAATGCAAATCCAA...GCACTTTTGGAAGCTCAGTGTCGTGAAATGAAACCAAACCTTGGAGCCATCGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR-3UTR CAA 90 bp | CCTCAAGCTCCTCCTGGCTTAGAACTGCTACTGTCTCAACAGGATTATCTTCAATCTGCAGTTTTTGTATaGTTTATGACCTCTTCTGCC | + |
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Preference number: 3 (lower is better) Translates to: PQAPPGLELLLSQQDYLQSAVFV*FMTSSA Trigger: GGCAGAAGAGGTCATAAACAATACAAAAACTGCAGA...TTGAAGATAATCCTGTTGAGACAGTAGCAGTTCTAAGCCAGGAGGAGCTTGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR GCA 72 bp | TCCAGTTCTTTAATTTGTACACACAGATACTCTTCTTaGTCTGATAAGCCCTGGATGCTTGCAGCGAACTTT | + |
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Preference number: 3 (lower is better) Translates to: SSSLICTHRYSS*SDKPWMLAANF Trigger: AAAGTTCGCTGCAAGCATCCAGGGCTTATCAGAGCAAGAAGAGTATCTGTGTGTACAAATTAAAGAACTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR TCA 72 bp | CCTTACTTAATTGAGACACTGCTGTATTATGTCGACTaGGATAGATATCAAGTTCTGACTGAGCAACTTCCA | + |
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Preference number: 3 (lower is better) Translates to: PYLIETLLYYVD*DRYQVLTEQLP Trigger: TGGAAGTTGCTCAGTCAGAACTTGATATCTATCTCAGTCGACATAATACAGCAGTGTCTCAATTAAGTAAGG 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CCA 72 bp | TTTTTAAGATTTCTGTCAGCAGTCTTGATTGCTACTTaGGCCTTAGTAATAGCAGAAGCACATTCATCAAGC | + |
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Preference number: 3 (lower is better) Translates to: FLRFLSAVLIAT*ALVIAEAHSSS Trigger: GCTTGATGAATGTGCTTCTGCTATTACTAAGGCCCAAGTAGCAATCAAGACTGCTGACAGAAATCTTAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR GCA 72 bp | GGCCCACACTGTCATCTTATCCAAACCTATGAAAGTTaGAATCCCAATATTATGCTTTTTAAGGAAGTTTAC | + |
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Preference number: 3 (lower is better) Translates to: GPHCHLIQTYES*NPNIMLFKEVY Trigger: GTAAACTTCCTTAAAAAGCATAATATTGGGATTGCAACTTTCATAGGTTTGGATAAGATGACAGTGTGGGCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| 3UTR CCA 72 bp | TGTTCAACTTCACCCTGCAAGATTAAAAATCGATTATaGTCTAAGTCAATGCCATGGCTTCTAAGGAGATTT | + |
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Preference number: 3 (lower is better) Translates to: CSTSPCKIKNRL*SKSMPWLLRRF Trigger: AAATCTCCTTAGAAGCCATGGCATTGACTTAGACCATAATCGATTTTTAATCTTGCAGGGTGAAGTTGAACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| 3UTR GCA 72 bp | TTGGGTTTCATCATAGCAATCTGTTCAACTTCACCCTaGAAGATTAAAAATCGATTATGGTCTAAGTCAATG | + |
|
Preference number: 3 (lower is better) Translates to: LGFIIAICSTSP*KIKNRLWSKSM Trigger: CATTGACTTAGACCATAATCGATTTTTAATCTTGCAGGGTGAAGTTGAACAGATTGCTATGATGAAACCCAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| 3UTR CCA 72 bp | AAGATTAAAAATCGATTATGGTCTAAGTCAATGCCATaGCTTCTAAGGAGATTTCCAACATCTTTAAACGTC | + |
|
Preference number: 3 (lower is better) Translates to: KIKNRLWSKSMP*LLRRFPTSLNV Trigger: GACGTTTAAAGATGTTGGAAATCTCCTTAGAAGCCATGGCATTGACTTAGACCATAATCGATTTTTAATCTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| CDS-3UTR CCA 90 bp | GCGTCTGTCTCTTTGGTACGCTACTCTTGTAGCTTGATCCAAATTGTTAGCCACGGCCCTTCCTCCTGGTaGCAGGCAGTGGAGGGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: ASVSLVRYSCSLIQIVSHGPSSW*QAVEGL Trigger: CAAGCCCTCCACTGCCTGCCACCAGGAGGAAGGGCC...GTGGCTAACAATTTGGATCAAGCTACAAGAGTAGCGTACCAAAGAGACAGACGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| CDS-3UTR CCA 90 bp | CCAGCGTCTGTCTCTTTGGTACGCTACTCTTGTAGCTTGATCCAAATTGTTAGCCCTGGTGGCAGGCAGTaGAGGGCTTGGTGCCCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: PASVSLVRYSCSLIQIVSPGGRQ*RAWCPY Trigger: GTAAGGGCACCAAGCCCTCCACTGCCTGCCACCAGG...GCTAACAATTTGGATCAAGCTACAAGAGTAGCGTACCAAAGAGACAGACGCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| CDS-3UTR CCA 90 bp | TCTGTCTCTTTGGTACGCTACTCTTGTAGCTTGATCCAAATTGTTAGCCACCAAGGCCCTTCCTCCTGGTaGCAGGCAGTGGAGGGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: SVSLVRYSCSLIQIVSHQGPSSW*QAVEGL Trigger: CAAGCCCTCCACTGCCTGCCACCAGGAGGAAGGGCC...TTGGTGGCTAACAATTTGGATCAAGCTACAAGAGTAGCGTACCAAAGAGACAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| 3UTR CAA 72 bp | TCGATAACCGAAGAGCCCATCCTTCCTCTCATCACCTaGCTTCCACCGCCACTCATTGTACCTGACTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SITEEPILPLIT*LPPPLIVPDCS Trigger: AGAACAGTCAGGTACAATGAGTGGCGGTGGAAGCAAGGTGATGAGAGGAAGGATGGGCTCTTCGGTTATCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000148385.8 ENSMUST00000149174.3 ENSMUST00000195525.2 |
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| CDS-3UTR CCA 90 bp | ATGCCATGGCTTCTAAGGAGATTTCCAACATCTTTAAACGTCTTCTTCTTCCCACCTGGTGGCAGGCAGTaGAGGGCTTGGTGCCCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: MPWLLRRFPTSLNVFFFPPGGRQ*RAWCPY Trigger: GTAAGGGCACCAAGCCCTCCACTGCCTGCCACCAGG...TGGGAAGAAGAAGACGTTTAAAGATGTTGGAAATCTCCTTAGAAGCCATGGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| CDS-3UTR GCA 90 bp | TGTTCTATGATCTGTCCCTGCAGAGTCACTACTCTCCAGCGTCTGTCTCTTTGGTGTGGTAGACAGAAGTaGTATCTCTGTAGGCGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: CSMICPCRVTTLQRLSLWCGRQK*YLCRRF Trigger: AAACCGCCTACAGAGATAGCACTTCTGTCTACCACA...CCAAAGAGACAGACGCTGGAGAGTAGTGACTCTGCAGGGACAGATCATAGAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195525.2 |
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| 3UTR CAA 72 bp | TCCCTGCAGAGTCACTACTCTCCAGCGTCTGTCTCTTaGGTACGCTACTCTTGTAGCTTGATCCAAATTGTT | + |
|
Preference number: 4 (lower is better) Translates to: SLQSHYSPASVS*VRYSCSLIQIV Trigger: AACAATTTGGATCAAGCTACAAGAGTAGCGTACCAAAGAGACAGACGCTGGAGAGTAGTGACTCTGCAGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000148385.8 ENSMUST00000149174.3 ENSMUST00000195525.2 |
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| 3UTR CAA 72 bp | ACACATTCTTGGGCTTCATCATGTTCAGTCTGGCCTTaGGGTTTCATCATAGCAATCTGTTCAACTTCACCC | + |
|
Preference number: 4 (lower is better) Translates to: THSWASSCSVWP*GFIIAICSTSP Trigger: GGGTGAAGTTGAACAGATTGCTATGATGAAACCCAAAGGCCAGACTGAACATGATGAAGCCCAAGAATGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195525.2 |
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| 3UTR CAA 72 bp | TACTCAAGCATACCTTCATCATGTTCAGTCTGGCCTTaGGGTTTCATCATAGCAATCTGTTCAACTTCACCC | + |
|
Preference number: 4 (lower is better) Translates to: YSSIPSSCSVWP*GFIIAICSTSP Trigger: GGGTGAAGTTGAACAGATTGCTATGATGAAACCCAAAGGCCAGACTGAACATGATGAAGGTATGCTTGAGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| CDS-3UTR TCA 90 bp | TACTCTCCAGCGTCTGTCTCTTTGGTACGCTACTCTTGTAGCTTGATCCAAATTTGCATGGCAACAGGATaGAATAGCAATGTCATATTT | + |
|
Preference number: 4 (lower is better) Translates to: YSPASVSLVRYSCSLIQICMATG*NSNVIF Trigger: AAATATGACATTGCTATTTCATCCTGTTGCCATGCA...AATTTGGATCAAGCTACAAGAGTAGCGTACCAAAGAGACAGACGCTGGAGAGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149174.3 |
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| 3UTR CAA 72 bp | GTGTCAAGTTTGTTTTGCTGGGCCTTGAGTTTTCGGTaGTTGATATCTATGATGGTATTGTGTAGCCGTTTA | + |
|
Preference number: 4 (lower is better) Translates to: VSSLFCWALSFR*LISMMVLCSRL Trigger: TAAACGGCTACACAATACCATCATAGATATCAACAACCGAAAACTCAAGGCCCAGCAAAACAAACTTGACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CAA 72 bp | GCACATTCATCAAGCTGCTTATTTATCGTGTCAAGTTaGTTTTGCTGGGCCTTGAGTTTTCGGTTGTTGATA | + |
|
Preference number: 4 (lower is better) Translates to: AHSSSCLFIVSS*FCWALSFRLLI Trigger: TATCAACAACCGAAAACTCAAGGCCCAGCAAAACAAACTTGACACGATAAATAAGCAGCTTGATGAATGTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CAA 72 bp | AAAAGTGCAATTTCATTTGTTATAGACTCTGGATTCTaGATTGCCTCAAGCTCCTCCTGGCTTAGAACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: KSAISFVIDSGF*IASSSSWLRTA Trigger: AGCAGTTCTAAGCCAGGAGGAGCTTGAGGCAATCAAGAATCCAGAGTCTATAACAAATGAAATTGCACTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CAA 72 bp | CTTTTTAAGATTTCTGTCAGCAGTCTTGATTGCTACTaGGGCCTTAGTAATAGCAGAAGCACATTCATCAAG | + |
|
Preference number: 4 (lower is better) Translates to: LFKISVSSLDCY*GLSNSRSTFIK Trigger: CTTGATGAATGTGCTTCTGCTATTACTAAGGCCCAAGTAGCAATCAAGACTGCTGACAGAAATCTTAAAAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| 3UTR CAA 72 bp | TGGATTTCTGGTAAGGATGTCTCTGCAGTTTTTGTATaGTTTATGACCTCTTCTGCCTTGTCTTCAATATTT | + |
|
Preference number: 4 (lower is better) Translates to: WISGKDVSAVFV*FMTSSALSSIF Trigger: AAATATTGAAGACAAGGCAGAAGAGGTCATAAACAATACAAAAACTGCAGAGACATCCTTACCAGAAATCCA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148385.8 |
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| CDS CCA 90 bp | TCGCCGGCCGGTTGCTCCATCTCTTCGTCGCTGTGGGCACCGTCCTaGGAGGGCGGCGGCCCTTCCTCCTGGTGGCAGGCAGTGGAGGGC | + |
|
Preference number: 5 (lower is better) Translates to: SPAGCSISSSLWAPS*EGGGPSSWWQAVEG Trigger: GCCCTCCACTGCCTGCCACCAGGAGGAAGGGCCGCCGCCCTCCCAGGACGGTGCCCACAGCGACGAAGAGATGGAGCAACCGGCCGGCGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000042901.15 ENSMUST00000107803.7 ENSMUST00000136502.8 ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| CDS GCA 90 bp | TATCATGAGACGAGGAGCTCCAGCTTCACTGGCCATGGTTGCGGGTaGAGCGCTCTCCGCTTCGCCGGCCGGTTGCTCCATCTCTTCGTC | + |
|
Preference number: 5 (lower is better) Translates to: YHETRSSSFTGHGCG*SALRFAGRLLHLFV Trigger: GACGAAGAGATGGAGCAACCGGCCGGCGAAGCGGAGAGCGCTGCACCCGCAACCATGGCCAGTGAAGCTGGAGCTCCTCGTCTCATGATA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107803.7 |
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| CDS GCA 90 bp | ATGAGTTATCATGAGACGAGGAGCTCCAGCTTCACTGGCCATGGTTaGGGGTGCAGCGCTCTCCGCTTCGCCGGCCGGTTGCTCCATCTC | + |
|
Preference number: 5 (lower is better) Translates to: MSYHETRSSSFTGHG*GCSALRFAGRLLHL Trigger: GAGATGGAGCAACCGGCCGGCGAAGCGGAGAGCGCTGCACCCGCAACCATGGCCAGTGAAGCTGGAGCTCCTCGTCTCATGATAACTCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107803.7 |
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| CDS GCA 90 bp | TTATGTGGTAGACAGAAGTGCTATCTCTGTAGGCGGTTTTGCGGGTaGAGCGCTCTCCGCTTCGCCGGCCGGTTGCTCCATCTCTTCGTC | + |
|
Preference number: 5 (lower is better) Translates to: LCGRQKCYLCRRFCG*SALRFAGRLLHLFV Trigger: GACGAAGAGATGGAGCAACCGGCCGGCGAAGCGGAGAGCGCTGCACCCGCAAAACCGCCTACAGAGATAGCACTTCTGTCTACCACATAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000195525.2 |
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| CDS-3UTR CAA 90 bp | CTCATTGTACCTGACTGTTCTATGATCTGTCCCTGCAGAGTCACTACTCTCCAGCCCTACTTCGATTCATaGCTAAGGAACTCTTTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: LIVPDCSMICPCRVTTLQPYFDS*LRNSLL Trigger: AAGCAAAGAGTTCCTTAGCAATGAATCGAAGTAGGG...CTGGAGAGTAGTGACTCTGCAGGGACAGATCATAGAACAGTCAGGTACAATGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149174.3 |
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| CDS-3UTR CAA 90 bp | TCTGTCTCTTTGGTACGCTACTCTTGTAGCTTGATCCAAATTGTTAGCCACCAAGAAGTTTACACATTCTaGGGCTGTATCAATAGAATC | + |
|
Preference number: 5 (lower is better) Translates to: SVSLVRYSCSLIQIVSHQEVYTF*GCINRI Trigger: GATTCTATTGATACAGCCCAAGAATGTGTAAACTTC...TTGGTGGCTAACAATTTGGATCAAGCTACAAGAGTAGCGTACCAAAGAGACAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149174.3 |
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| CDS CCA 72 bp | GCTTCGCCGGCCGGTTGCTCCATCTCTTCGTCGCTGTaGGCACCGTCCTGGGAGGGCGGCGGCCCTTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: ASPAGCSISSSL*APSWEGGGPSS Trigger: GGAGGAAGGGCCGCCGCCCTCCCAGGACGGTGCCCACAGCGACGAAGAGATGGAGCAACCGGCCGGCGAAGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000042901.15 ENSMUST00000107803.7 ENSMUST00000136502.8 ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| CDS CCA 72 bp | GGTTGCTCCATCTCTTCGTCGCTGTGGGCACCGTCCTaGGAGGGCGGCGGCCCTTCCTCCTGGTGGCAGGCA | + |
|
Preference number: 6 (lower is better) Translates to: GCSISSSLWAPS*EGGGPSSWWQA Trigger: TGCCTGCCACCAGGAGGAAGGGCCGCCGCCCTCCCAGGACGGTGCCCACAGCGACGAAGAGATGGAGCAACC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000042901.15 ENSMUST00000107803.7 ENSMUST00000136502.8 ENSMUST00000148385.8 ENSMUST00000195525.2 |
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| CDS GCA 72 bp | ACGAGGAGCTCCAGCTTCACTGGCCATGGTTGCGGGTaGAGCGCTCTCCGCTTCGCCGGCCGGTTGCTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: TRSSSFTGHGCG*SALRFAGRLLH Trigger: ATGGAGCAACCGGCCGGCGAAGCGGAGAGCGCTGCACCCGCAACCATGGCCAGTGAAGCTGGAGCTCCTCGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107803.7 |
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| CDS GCA 72 bp | TGTGGTAGACAGAAGTGCTATCTCTGTAGGCGGTTTTaGGGGTGCAGCGCTCTCCGCTTCGCCGGCCGGTTG | + |
|
Preference number: 6 (lower is better) Translates to: CGRQKCYLCRRF*GCSALRFAGRL Trigger: CAACCGGCCGGCGAAGCGGAGAGCGCTGCACCCGCAAAACCGCCTACAGAGATAGCACTTCTGTCTACCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000195525.2 |
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| CDS CAA 72 bp | CTAAACTTCTGTTATCCAGCTCCTCACCTGGAGGCTTaGCGGGTGCAGCGCTCTCCGCTTCGCCGGCCGGTT | + |
|
Preference number: 6 (lower is better) Translates to: LNFCYPAPHLEA*RVQRSPLRRPV Trigger: AACCGGCCGGCGAAGCGGAGAGCGCTGCACCCGCAAAGCCTCCAGGTGAGGAGCTGGATAACAGAAGTTTAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042901.15 ENSMUST00000136502.8 |
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