RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMC1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022432

Ensembl transcript IDs: ENSMUST00000023068.8, ENSMUST00000227591.2

Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGTGCTCGCAAGTTTGGAGCTGTAGTCTTCAGTAGAGTGTTTTCTTaGGATGCTACTTGCTGTAGAAGGAGTGTAAGGTGGGCCTCCACC +
Preference number: 1 (lower is better)
Translates to: CARKFGAVVFSRVFS*DATCCRRSVRWAST
Trigger: GGTGGAGGCCCACCTTACACTCCTTCTACAGCAAGTAGCATCCCAAGAAAACACTCTACTGAAGACTACAGCTCCAAACTTGCGAGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
3UTR GCA 90 bp TTTGGAGCTGTAGTCTTCAGTAGAGTGTTTTCTTGGGATGCTACTTaGTGTAGAAGGAGTGTAAGGTGGGCCTCCACCTCCTTATCTGAT +
Preference number: 1 (lower is better)
Translates to: FGAVVFSRVFSWDAT*CRRSVRWASTSLSD
Trigger: ATCAGATAAGGAGGTGGAGGCCCACCTTACACTCCTTCTACAGCAAGTAGCATCCCAAGAAAACACTCTACTGAAGACTACAGCTCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
3UTR CCA 90 bp AGAGTGTTTTCTTGGGATGCTACTTGCTGTAGAAGGAGTGTAAGGTaGGCCTCCACCTCCTTATCTGATTGTAGAGCCTTTAAATCCTCC +
Preference number: 1 (lower is better)
Translates to: RVFSWDATCCRRSVR*ASTSLSDCRAFKSS
Trigger: GGAGGATTTAAAGGCTCTACAATCAGATAAGGAGGTGGAGGCCCACCTTACACTCCTTCTACAGCAAGTAGCATCCCAAGAAAACACTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
3UTR CCA 90 bp GTAGAGCCTTTAAATCCTCCCTTAGAGGGCTGTAGTCTATTTGGATaGATGCTTCTTTCTCATAGATATCAGCTGTTGCCTGGGTGCTTT +
Preference number: 1 (lower is better)
Translates to: VEPLNPPLEGCSLFG*MLLSHRYQLLPGCF
Trigger: AAAGCACCCAGGCAACAGCTGATATCTATGAGAAAGAAGCATCCATCCAAATAGACTACAGCCCTCTAAGGGAGGATTTAAAGGCTCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
3UTR-3UTR GCA 90 bp ACAGTCTTTAAGTTCTCCTGTGCTCGCAAGTTTGGAGCTGTAGTCTTCAGTAGAATAGATATCAGCTGTTaGCTGGGTGCTTTCTGTTTC +
Preference number: 2 (lower is better)
Translates to: TVFKFSCARKFGAVVFSRIDISC*LGAFCF
Trigger: GAAACAGAAAGCACCCAGGCAACAGCTGATATCTAT...TCTACTGAAGACTACAGCTCCAAACTTGCGAGCACAGGAGAACTTAAAGACTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
3UTR GCA 72 bp GTAGTCTTCAGTAGAGTGTTTTCTTGGGATGCTACTTaGTGTAGAAGGAGTGTAAGGTGGGCCTCCACCTCC +
Preference number: 3 (lower is better)
Translates to: VVFSRVFSWDAT*CRRSVRWASTS
Trigger: GGAGGTGGAGGCCCACCTTACACTCCTTCTACAGCAAGTAGCATCCCAAGAAAACACTCTACTGAAGACTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
3UTR CCA 72 bp TCTTGGGATGCTACTTGCTGTAGAAGGAGTGTAAGGTaGGCCTCCACCTCCTTATCTGATTGTAGAGCCTTT +
Preference number: 3 (lower is better)
Translates to: SWDATCCRRSVR*ASTSLSDCRAF
Trigger: AAAGGCTCTACAATCAGATAAGGAGGTGGAGGCCCACCTTACACTCCTTCTACAGCAAGTAGCATCCCAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
3UTR CCA 72 bp AAGTTTGGAGCTGTAGTCTTCAGTAGAGTGTTTTCTTaGGATGCTACTTGCTGTAGAAGGAGTGTAAGGTGG +
Preference number: 3 (lower is better)
Translates to: KFGAVVFSRVFS*DATCCRRSVRW
Trigger: CCACCTTACACTCCTTCTACAGCAAGTAGCATCCCAAGAAAACACTCTACTGAAGACTACAGCTCCAAACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
3UTR-3UTR CAA 90 bp TATCTGATTGTAGAGCCTTTAAATCCTCCCTTAGAGGGCTGTAGTCTATTTGGACATAGATATCAGCTGTaGCCTGGGTGCTTTCTGTTT +
Preference number: 3 (lower is better)
Translates to: YLIVEPLNPPLEGCSLFGHRYQL*PGCFLF
Trigger: AAACAGAAAGCACCCAGGCAACAGCTGATATCTATG...TCCAAATAGACTACAGCCCTCTAAGGGAGGATTTAAAGGCTCTACAATCAGATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
3UTR TCA 72 bp CCTCAAAAACATCTGCAGATTCTTGAAACTTGTCTCTaGCAGTCTTTAAGTTCTCCTGTGCTCGCAAGTTTG +
Preference number: 3 (lower is better)
Translates to: PQKHLQILETCL*QSLSSPVLASL
Trigger: CAAACTTGCGAGCACAGGAGAACTTAAAGACTGTCAGAGACAAGTTTCAAGAATCTGCAGATGTTTTTGAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
CDS-3UTR GCA 90 bp GTAGTCTATTTGGATGGATGCTTCTTTCTCATAGATATCAGCTGTTGCCTGGGTCAGCCAAAACCTTCTTaGGTTCCTCTTCAATTTGTA +
Preference number: 4 (lower is better)
Translates to: VVYLDGCFFLIDISCCLGQPKPS*VPLQFV
Trigger: TACAAATTGAAGAGGAACGCAAGAAGGTTTTGGCTG...ACCCAGGCAACAGCTGATATCTATGAGAAAGAAGCATCCATCCAAATAGACTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
CDS GCA 90 bp GAGACATTGATACTCGTGGTACTCTGGGCTTCCGGTGGCTCCTGCTaGCTTCTTGGTCTTCGGTGTCTGGATACTTGGAAAGGTCCAGAG +
Preference number: 5 (lower is better)
Translates to: ETLILVVLWASGGSC*LLGLRCLDTWKGPE
Trigger: CTCTGGACCTTTCCAAGTATCCAGACACCGAAGACCAAGAAGGCAGCAGGAGCCACCGGAAGCCCAGAGTACCACGAGTATCAATGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS GCA 90 bp TTGGAGACATTGATACTCGTGGTACTCTGGGCTTCCGGTGGCTCCTaGTGCCTTCTTGGTCTTCGGTGTCTGGATACTTGGAAAGGTCCA +
Preference number: 5 (lower is better)
Translates to: LETLILVVLWASGGS*CLLGLRCLDTWKGP
Trigger: TGGACCTTTCCAAGTATCCAGACACCGAAGACCAAGAAGGCAGCAGGAGCCACCGGAAGCCCAGAGTACCACGAGTATCAATGTCTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CCA 90 bp GGAGACTTTGGAGACATTGATACTCGTGGTACTCTGGGCTTCCGGTaGCTCCTGCTGCCTTCTTGGTCTTCGGTGTCTGGATACTTGGAA +
Preference number: 5 (lower is better)
Translates to: GDFGDIDTRGTLGFR*LLLPSWSSVSGYLE
Trigger: TTCCAAGTATCCAGACACCGAAGACCAAGAAGGCAGCAGGAGCCACCGGAAGCCCAGAGTACCACGAGTATCAATGTCTCCAAAGTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS TCA 90 bp CTTCGGTGTCTGGATACTTGGAAAGGTCCAGAGTCAACACATGGCTaGACATGCACTCATTGTGCTCTGGGTAGACGCCTATCAGTGCAT +
Preference number: 5 (lower is better)
Translates to: LRCLDTWKGPESTHG*TCTHCALGRRLSVH
Trigger: ATGCACTGATAGGCGTCTACCCAGAGCACAATGAGTGCATGTTCAGCCATGTGTTGACTCTGGACCTTTCCAAGTATCCAGACACCGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CCA 90 bp AAGGTCCAGAGTCAACACATGGCTGAACATGCACTCATTGTGCTCTaGGTAGACGCCTATCAGTGCATCAGCTTTGGAGTAGAACTCCTC +
Preference number: 5 (lower is better)
Translates to: KVQSQHMAEHALIVL*VDAYQCISFGVELL
Trigger: GAGGAGTTCTACTCCAAAGCTGATGCACTGATAGGCGTCTACCCAGAGCACAATGAGTGCATGTTCAGCCATGTGTTGACTCTGGACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS GCA 90 bp ATGGCTGAACATGCACTCATTGTGCTCTGGGTAGACGCCTATCAGTaGATCAGCTTTGGAGTAGAACTCCTCTTTCAGGGAAATGATTAT +
Preference number: 5 (lower is better)
Translates to: MAEHALIVLWVDAYQ*ISFGVELLFQGNDY
Trigger: ATAATCATTTCCCTGAAAGAGGAGTTCTACTCCAAAGCTGATGCACTGATAGGCGTCTACCCAGAGCACAATGAGTGCATGTTCAGCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CCA 90 bp CGTACCTCCGTCTTTTCACCTGTTCAAACTCTTGCCTACATATTCTaGCTTCCTTTCTGCTGGCCTCAAAAACATCTGCAGATTCTTGAA +
Preference number: 5 (lower is better)
Translates to: RTSVFSPVQTLAYIF*LPFCWPQKHLQILE
Trigger: TTCAAGAATCTGCAGATGTTTTTGAGGCCAGCAGAAAGGAAGCCAGAATATGTAGGCAAGAGTTTGAACAGGTGAAAAGACGGAGGTACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS-3UTR CAA 90 bp CCCTTAGAGGGCTGTAGTCTATTTGGATGGATGCTTCTTTCTCATAGATATCAGACAGCCAAAACCTTCTaGCGTTCCTCTTCAATTTGT +
Preference number: 5 (lower is better)
Translates to: PLEGCSLFGWMLLSHRYQTAKTF*RSSSIC
Trigger: ACAAATTGAAGAGGAACGCAAGAAGGTTTTGGCTGT...CTGATATCTATGAGAAAGAAGCATCCATCCAAATAGACTACAGCCCTCTAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227591.2
CDS TCA 90 bp ATGATGTCCTCCAATGACCCCAGCACAAGACTTATGTCAATGTCTTaGACTTTGCAATCTAGCAGCAAGTTATGTTTCTCTAGCAGTTTC +
Preference number: 5 (lower is better)
Translates to: MMSSNDPSTRLMSMS*TLQSSSKLCFSSSF
Trigger: GAAACTGCTAGAGAAACATAACTTGCTGCTAGATTGCAAAGTTCAAGACATTGACATAAGTCTTGTGCTGGGGTCATTGGAGGACATCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS GCA 90 bp TCAATGTTGGAACTCTGTGTGGCAAGCACTTCCTTAATTTGCTCTTaGTTCACCATGAGTTCCTCAACAATTTTCAGACATTCTTCTTCG +
Preference number: 5 (lower is better)
Translates to: SMLELCVASTSLICS*FTMSSSTIFRHSSS
Trigger: CGAAGAAGAATGTCTGAAAATTGTTGAGGAACTCATGGTGAAGCAAGAGCAAATTAAGGAAGTGCTTGCCACACAGAGTTCCAACATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS TCA 90 bp TGTAGATTTGATCAATTGAGACTGAGATGTGTTCAAAACATTGACTaGAAGCATCGTACCTCCGTCTTTTCACCTGTTCAAACTCTTGCC +
Preference number: 5 (lower is better)
Translates to: CRFDQLRLRCVQNID*KHRTSVFSPVQTLA
Trigger: GGCAAGAGTTTGAACAGGTGAAAAGACGGAGGTACGATGCTTTCAGTCAATGTTTTGAACACATCTCAGTCTCAATTGATCAAATCTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 72 bp TTGAAAGGGCCGATGACCTGGCGGCCTCGCCACGACTaGAAATTCTCCACGAGCAGCAGCTCAAGGTGCCCC +
Preference number: 6 (lower is better)
Translates to: LKGPMTWRPRHD*KFSTSSSSRCP
Trigger: GGGGCACCTTGAGCTGCTGCTCGTGGAGAATTTCAAGTCGTGGCGAGGCCGCCAGGTCATCGGCCCTTTCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CCA 72 bp GGGGAGACTTTGGAGACATTGATACTCGTGGTACTCTaGGCTTCCGGTGGCTCCTGCTGCCTTCTTGGTCTT +
Preference number: 6 (lower is better)
Translates to: GETLETLILVVL*ASGGSCCLLGL
Trigger: AAGACCAAGAAGGCAGCAGGAGCCACCGGAAGCCCAGAGTACCACGAGTATCAATGTCTCCAAAGTCTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS GCA 72 bp ATACTCGTGGTACTCTGGGCTTCCGGTGGCTCCTGCTaGCTTCTTGGTCTTCGGTGTCTGGATACTTGGAAA +
Preference number: 6 (lower is better)
Translates to: ILVVLWASGGSC*LLGLRCLDTWK
Trigger: TTTCCAAGTATCCAGACACCGAAGACCAAGAAGGCAGCAGGAGCCACCGGAAGCCCAGAGTACCACGAGTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 90 bp TTCCGGTGGCTCCTGCTGCCTTCTTGGTCTTCGGTGTCTGGATACTaGGAAAGGTCCAGAGTCAACACATGGCTGAACATGCACTCATTG +
Preference number: 6 (lower is better)
Translates to: FRWLLLPSWSSVSGY*ERSRVNTWLNMHSL
Trigger: CAATGAGTGCATGTTCAGCCATGTGTTGACTCTGGACCTTTCCAAGTATCCAGACACCGAAGACCAAGAAGGCAGCAGGAGCCACCGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 72 bp CTCCTGCTGCCTTCTTGGTCTTCGGTGTCTGGATACTaGGAAAGGTCCAGAGTCAACACATGGCTGAACATG +
Preference number: 6 (lower is better)
Translates to: LLLPSWSSVSGY*ERSRVNTWLNM
Trigger: CATGTTCAGCCATGTGTTGACTCTGGACCTTTCCAAGTATCCAGACACCGAAGACCAAGAAGGCAGCAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 72 bp CAGTTGTTGTGTCATTATACCAACCTTCCGTCTGACTaGCTCCTTAAGCAGTTTGTAACGATCCAGCTGGCT +
Preference number: 6 (lower is better)
Translates to: QLLCHYTNLPSD*LLKQFVTIQLA
Trigger: AGCCAGCTGGATCGTTACAAACTGCTTAAGGAGCAAGTCAGACGGAAGGTTGGTATAATGACACAACAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 72 bp TTCTGCCTTCTGTTCCCACTGCAGTTTTTCCAGTTGTaGTGTCATTATACCAACCTTCCGTCTGACTTGCTC +
Preference number: 6 (lower is better)
Translates to: FCLLFPLQFFQL*CHYTNLPSDLL
Trigger: GAGCAAGTCAGACGGAAGGTTGGTATAATGACACAACAACTGGAAAAACTGCAGTGGGAACAGAAGGCAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 90 bp TTGACTGAAAGCATCGTACCTCCGTCTTTTCACCTGTTCAAACTCTaGCCTACATATTCTGGCTTCCTTTCTGCTGGCCTCAAAAACATC +
Preference number: 6 (lower is better)
Translates to: LTESIVPPSFHLFKL*PTYSGFLSAGLKNI
Trigger: GATGTTTTTGAGGCCAGCAGAAAGGAAGCCAGAATATGTAGGCAAGAGTTTGAACAGGTGAAAAGACGGAGGTACGATGCTTTCAGTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CCA 72 bp GTCTTTTCACCTGTTCAAACTCTTGCCTACATATTCTaGCTTCCTTTCTGCTGGCCTCAAAAACATCTGCAG +
Preference number: 6 (lower is better)
Translates to: VFSPVQTLAYIF*LPFCWPQKHLQ
Trigger: CTGCAGATGTTTTTGAGGCCAGCAGAAAGGAAGCCAGAATATGTAGGCAAGAGTTTGAACAGGTGAAAAGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CCA 72 bp TTCTGTGCTTTGACTATTATGCCTATGTTTTCCAACTaGGCTACATACACAGAACGACTCACGGGTTTATCC +
Preference number: 6 (lower is better)
Translates to: FCALTIMPMFSN*ATYTERLTGLS
Trigger: GGATAAACCCGTGAGTCGTTCTGTGTATGTAGCCCAGTTGGAAAACATAGGCATAATAGTCAAAGCACAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 72 bp AGCTCTTGGACTAGTTGGCTTCTTTTGTCTCTTAGATaGTGTAACTCTTTCTCATCCCAGCACAGAGCTTTG +
Preference number: 6 (lower is better)
Translates to: SSWTSWLLLSLR*CNSFSSQHRAL
Trigger: CAAAGCTCTGTGCTGGGATGAGAAAGAGTTACACAATCTAAGAGACAAAAGAAGCCAACTAGTCCAAGAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 72 bp GGAACTCTGTGTGGCAAGCACTTCCTTAATTTGCTCTaGCTTCACCATGAGTTCCTCAACAATTTTCAGACA +
Preference number: 6 (lower is better)
Translates to: GTLCGKHFLNLL*LHHEFLNNFQT
Trigger: TGTCTGAAAATTGTTGAGGAACTCATGGTGAAGCAAGAGCAAATTAAGGAAGTGCTTGCCACACAGAGTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 90 bp CAGTTTTTCCAGTTGTTGTGTCATTATACCAACCTTCCGTCTGACTaGCTCCTTAAGCAGTTTGTAACGATCCAGCTGGCTATTTTCCAA +
Preference number: 6 (lower is better)
Translates to: QFFQLLCHYTNLPSD*LLKQFVTIQLAIFQ
Trigger: TTGGAAAATAGCCAGCTGGATCGTTACAAACTGCTTAAGGAGCAAGTCAGACGGAAGGTTGGTATAATGACACAACAACTGGAAAAACTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CCA 72 bp TCCTTGCGGAGTGTCTTCATTAACTCCTTTAGCTCTTaGACTAGTTGGCTTCTTTTGTCTCTTAGATTGTGT +
Preference number: 6 (lower is better)
Translates to: SLRSVFINSFSS*TSWLLLSLRLC
Trigger: ACACAATCTAAGAGACAAAAGAAGCCAACTAGTCCAAGAGCTAAAGGAGTTAATGAAGACACTCCGCAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 90 bp AACTCCTTTAGCTCTTGGACTAGTTGGCTTCTTTTGTCTCTTAGATaGTGTAACTCTTTCTCATCCCAGCACAGAGCTTTGTGCTTTAAG +
Preference number: 6 (lower is better)
Translates to: NSFSSWTSWLLLSLR*CNSFSSQHRALCFK
Trigger: CTTAAAGCACAAAGCTCTGTGCTGGGATGAGAAAGAGTTACACAATCTAAGAGACAAAAGAAGCCAACTAGTCCAAGAGCTAAAGGAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 90 bp AGTGTCTTCATTAACTCCTTTAGCTCTTGGACTAGTTGGCTTCTTTaGTCTCTTAGATTGTGTAACTCTTTCTCATCCCAGCACAGAGCT +
Preference number: 6 (lower is better)
Translates to: SVFINSFSSWTSWLL*SLRLCNSFSSQHRA
Trigger: AGCTCTGTGCTGGGATGAGAAAGAGTTACACAATCTAAGAGACAAAAGAAGCCAACTAGTCCAAGAGCTAAAGGAGTTAATGAAGACACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 90 bp TTGGTTCCTTGTACTAAAGTCTGTATTTGCTTCAGATCTGTTTCCTaGCGGAGTGTCTTCATTAACTCCTTTAGCTCTTGGACTAGTTGG +
Preference number: 6 (lower is better)
Translates to: LVPCTKVCICFRSVS*RSVFINSFSSWTSW
Trigger: CCAACTAGTCCAAGAGCTAAAGGAGTTAATGAAGACACTCCGCAAGGAAACAGATCTGAAGCAAATACAGACTTTAGTACAAGGAACCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 90 bp TTCAATGTTGGAACTCTGTGTGGCAAGCACTTCCTTAATTTGCTCTaGCTTCACCATGAGTTCCTCAACAATTTTCAGACATTCTTCTTC +
Preference number: 6 (lower is better)
Translates to: FNVGTLCGKHFLNLL*LHHEFLNNFQTFFF
Trigger: GAAGAAGAATGTCTGAAAATTGTTGAGGAACTCATGGTGAAGCAAGAGCAAATTAAGGAAGTGCTTGCCACACAGAGTTCCAACATTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS TCA 72 bp CTACAGTTCCCTGAAAAACTAGACAGTTCTGTGCTTTaGCTATTATGCCTATGTTTTCCAACTGGGCTACAT +
Preference number: 6 (lower is better)
Translates to: LQFPEKLDSSVL*LLCLCFPTGLH
Trigger: ATGTAGCCCAGTTGGAAAACATAGGCATAATAGTCAAAGCACAGAACTGTCTAGTTTTTCAGGGAACTGTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS TCA 72 bp TCCAATGACCCCAGCACAAGACTTATGTCAATGTCTTaGACTTTGCAATCTAGCAGCAAGTTATGTTTCTCT +
Preference number: 6 (lower is better)
Translates to: SNDPSTRLMSMS*TLQSSSKLCFS
Trigger: AGAGAAACATAACTTGCTGCTAGATTGCAAAGTTCAAGACATTGACATAAGTCTTGTGCTGGGGTCATTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS TCA 72 bp GATCAATTGAGACTGAGATGTGTTCAAAACATTGACTaGAAGCATCGTACCTCCGTCTTTTCACCTGTTCAA +
Preference number: 6 (lower is better)
Translates to: DQLRLRCVQNID*KHRTSVFSPVQ
Trigger: TTGAACAGGTGAAAAGACGGAGGTACGATGCTTTCAGTCAATGTTTTGAACACATCTCAGTCTCAATTGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8
CDS CAA 72 bp ATTAACTCCTTTAGCTCTTGGACTAGTTGGCTTCTTTaGTCTCTTAGATTGTGTAACTCTTTCTCATCCCAG +
Preference number: 6 (lower is better)
Translates to: INSFSSWTSWLL*SLRLCNSFSSQ
Trigger: CTGGGATGAGAAAGAGTTACACAATCTAAGAGACAAAAGAAGCCAACTAGTCCAAGAGCTAAAGGAGTTAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023068.8