Pregenerated sensors for SMBD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094430Ensembl transcript IDs: ENSMUST00000179384.3
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TACCCCTGGGCTGGGCCAGCCATGTTGGCCCCAACAAACCAAAGGTaGCCTCTGTTCCATGGGTCCTGCTGGCCAGGGCTGGAGAAAGAC | + |
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Preference number: 1 (lower is better) Translates to: YPWAGPAMLAPTNQR*PLFHGSCWPGLEKD Trigger: GTCTTTCTCCAGCCCTGGCCAGCAGGACCCATGGAACAGAGGTCACCTTTGGTTTGTTGGGGCCAACATGGCTGGCCCAGCCCAGGGGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| 3UTR-3UTR CCA 90 bp | GCCAAGCCAATGTGGGGGCTAATAGGATGGCAGCTGAGAGACAGATACCCCTGGGTGACCTCTGTTCCATaGGTCCTGCTGGCCAGGGCT | + |
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Preference number: 2 (lower is better) Translates to: AKPMWGLIGWQLRDRYPWVTSVP*VLLARA Trigger: AGCCCTGGCCAGCAGGACCCATGGAACAGAGGTCAC...CCAGGGGTATCTGTCTCTCAGCTGCCATCCTATTAGCCCCCACATTGGCTTGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| 3UTR TCA 72 bp | GCTGGGCCAGCCATGTTGGCCCCAACAAACCAAAGGTaGCCTCTGTTCCATGGGTCCTGCTGGCCAGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: AGPAMLAPTNQR*PLFHGSCWPGL Trigger: CAGCCCTGGCCAGCAGGACCCATGGAACAGAGGTCACCTTTGGTTTGTTGGGGCCAACATGGCTGGCCCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| 3UTR CCA 72 bp | GGGCTAATAGGATGGCAGCTGAGAGACAGATACCCCTaGGCTGGGCCAGCCATGTTGGCCCCAACAAACCAA | + |
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Preference number: 3 (lower is better) Translates to: GLIGWQLRDRYP*AGPAMLAPTNQ Trigger: TTGGTTTGTTGGGGCCAACATGGCTGGCCCAGCCCAGGGGTATCTGTCTCTCAGCTGCCATCCTATTAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| 3UTR CCA 72 bp | AATAGGATGGCAGCTGAGAGACAGATACCCCTGGGCTaGGCCAGCCATGTTGGCCCCAACAAACCAAAGGTG | + |
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Preference number: 3 (lower is better) Translates to: NRMAAERQIPLG*ASHVGPNKPKV Trigger: CACCTTTGGTTTGTTGGGGCCAACATGGCTGGCCCAGCCCAGGGGTATCTGTCTCTCAGCTGCCATCCTATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| 3UTR-3UTR CAA 90 bp | TTATGGCTAATTCTGTGCACTTTTAAATGTGTTTACAACAATCCCAGGTTTCAGGCTGGGCCAGCCATGTaGGCCCCAACAAACCAAAGG | + |
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Preference number: 3 (lower is better) Translates to: LWLILCTFKCVYNNPRFQAGPAM*APTNQR Trigger: CCTTTGGTTTGTTGGGGCCAACATGGCTGGCCCAGC...CTGAAACCTGGGATTGTTGTAAACACATTTAAAAGTGCACAGAATTAGCCATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS-3UTR CCA 90 bp | CCCCTGGGCTGGGCCAGCCATGTTGGCCCCAACAAACCAAAGGTGACCTCTGTTCCGAGAGTGGCCTTCTaGAGAGGCTGTGGAGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: PLGWASHVGPNKPKVTSVPRVAF*RGCGGA Trigger: AGCTCCTCCACAGCCTCTCCAGAAGGCCACTCTCGG...AACAGAGGTCACCTTTGGTTTGTTGGGGCCAACATGGCTGGCCCAGCCCAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS-3UTR CCA 90 bp | TGTTGGCCCCAACAAACCAAAGGTGACCTCTGTTCCATGGGTCCTGCTGGCCAGCAGCTGAGCCACGGGTaGAAGAGAGCCTGCATGCAG | + |
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Preference number: 4 (lower is better) Translates to: CWPQQTKGDLCSMGPAGQQLSHG*KRACMQ Trigger: CTGCATGCAGGCTCTCTTCCACCCGTGGCTCAGCTG...CTGGCCAGCAGGACCCATGGAACAGAGGTCACCTTTGGTTTGTTGGGGCCAACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS-3UTR CCA 90 bp | CCCAACAAACCAAAGGTGACCTCTGTTCCATGGGTCCTGCTGGCCAGGGCTGGATTGCAGAGGGTCTCGTaGTCTGGGCAGCAGTCTGAT | + |
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Preference number: 4 (lower is better) Translates to: PNKPKVTSVPWVLLARAGLQRVS*SGQQSD Trigger: ATCAGACTGCTGCCCAGACCACGAGACCCTCTGCAA...TCCAGCCCTGGCCAGCAGGACCCATGGAACAGAGGTCACCTTTGGTTTGTTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS-3UTR GCA 90 bp | TGTTGGCCCCAACAAACCAAAGGTGACCTCTGTTCCATGGGTCCTGCTGGCCAGGGAAGAGAGCCTGCATaGAGGTCACTGGAGTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: CWPQQTKGDLCSMGPAGQGREPA*RSLELQ Trigger: CTGCAACTCCAGTGACCTGCATGCAGGCTCTCTTCC...CTGGCCAGCAGGACCCATGGAACAGAGGTCACCTTTGGTTTGTTGGGGCCAACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS-3UTR TCA 90 bp | CAGCCATGTTGGCCCCAACAAACCAAAGGTGACCTCTGTTCCATGGGTCCTGCTTTGATTGTTCCTGGCTaGGTCGAGTGGCCTCTCGGT | + |
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Preference number: 4 (lower is better) Translates to: QPCWPQQTKGDLCSMGPALIVPG*VEWPLG Trigger: ACCGAGAGGCCACTCGACTCAGCCAGGAACAATCAA...AGCAGGACCCATGGAACAGAGGTCACCTTTGGTTTGTTGGGGCCAACATGGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS-3UTR TCA 90 bp | CCCCAGGCCAAGCCAATGTGGGGGCTAATAGGATGGCAGCTGAGAGACAGATACACCATCTTGGGAGTGTaGAAGGCTCTGTGGGTTACA | + |
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Preference number: 4 (lower is better) Translates to: PQAKPMWGLIGWQLRDRYTILGV*KALWVT Trigger: TGTAACCCACAGAGCCTTTCACACTCCCAAGATGGT...GTATCTGTCTCTCAGCTGCCATCCTATTAGCCCCCACATTGGCTTGGCCTGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS-3UTR GCA 90 bp | GCCAAGCCAATGTGGGGGCTAATAGGATGGCAGCTGAGAGACAGATACCCCTGGAGCAGTTTCCTCTCTTaGAGCCATAATCCTCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: AKPMWGLIGWQLRDRYPWSSFLS*SHNPLR Trigger: CCGGAGAGGATTATGGCTGCAAGAGAGGAAACTGCT...CCAGGGGTATCTGTCTCTCAGCTGCCATCCTATTAGCCCCCACATTGGCTTGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS GCA 90 bp | GCTGAGCCACGGGTGGAAGAGAGCCTGCATGCAGGTCACTGGAGTTaGAGAGGGTCTCGTGGTCTGGGCAGCAGTCTGATAGCACACGGC | + |
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Preference number: 5 (lower is better) Translates to: AEPRVEESLHAGHWS*RGSRGLGSSLIAHG Trigger: GCCGTGTGCTATCAGACTGCTGCCCAGACCACGAGACCCTCTGCAACTCCAGTGACCTGCATGCAGGCTCTCTTCCACCCGTGGCTCAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS-3UTR CAA 90 bp | CCCCTGGGCTGGGCCAGCCATGTTGGCCCCAACAAACCAAAGGTGACCTCTGTTTGCCTGCCTTCTGGTTaGGAATCACAGGGCCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: PLGWASHVGPNKPKVTSVCLPSG*ESQGPA Trigger: GGCTGGGCCCTGTGATTCCAAACCAGAAGGCAGGCA...AACAGAGGTCACCTTTGGTTTGTTGGGGCCAACATGGCTGGCCCAGCCCAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS CCA 90 bp | AGTCGAGTGGCCTCTCGGTCCTCAGCACCATCTGTAGCACCATCTTaGGAGTGTGAAAGGCTCTGTGGGTTACAGCATCCAGCTGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: SRVASRSSAPSVAPS*ECERLCGLQHPAEP Trigger: TGGCTCAGCTGGATGCTGTAACCCACAGAGCCTTTCACACTCCCAAGATGGTGCTACAGATGGTGCTGAGGACCGAGAGGCCACTCGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS-3UTR CAA 90 bp | CAGCCATGTTGGCCCCAACAAACCAAAGGTGACCTCTGTTCCATGGGTCCTGCTTGCAGGTCACTGGAGTaGCAGAGGGTCTCGTGGTCT | + |
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Preference number: 5 (lower is better) Translates to: QPCWPQQTKGDLCSMGPACRSLE*QRVSWS Trigger: AGACCACGAGACCCTCTGCAACTCCAGTGACCTGCA...AGCAGGACCCATGGAACAGAGGTCACCTTTGGTTTGTTGGGGCCAACATGGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS TCA 90 bp | GAGAGGCTGTGGAGGAGCTGCAGAACCATGTTTTGTACCAAATCTTaGTTGTTCCTGGCTGAGTCGAGTGGCCTCTCGGTCCTCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: ERLWRSCRTMFCTKS*LFLAESSGLSVLST Trigger: GGTGCTGAGGACCGAGAGGCCACTCGACTCAGCCAGGAACAATCAAGATTTGGTACAAAACATGGTTCTGCAGCTCCTCCACAGCCTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS GCA 90 bp | CTGATAGCACACGGCAGAATTTATCACAATAGCAGTTTCCTCTCTTaGAGCCATAATCCTCTCCGGGGCAGCAGAGAGGCTGGGGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: LIAHGRIYHNSSFLS*SHNPLRGSREAGAG Trigger: CCCAGCCCCAGCCTCTCTGCTGCCCCGGAGAGGATTATGGCTGCAAGAGAGGAAACTGCTATTGTGATAAATTCTGCCGTGTGCTATCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS CCA 90 bp | GGAGGAGCTGCAGAACCATGTTTTGTACCAAATCTTGATTGTTCCTaGCTGAGTCGAGTGGCCTCTCGGTCCTCAGCACCATCTGTAGCA | + |
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Preference number: 5 (lower is better) Translates to: GGAAEPCFVPNLDCS*LSRVASRSSAPSVA Trigger: TGCTACAGATGGTGCTGAGGACCGAGAGGCCACTCGACTCAGCCAGGAACAATCAAGATTTGGTACAAAACATGGTTCTGCAGCTCCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS-3UTR CAA 90 bp | TCCCCAGGCCAAGCCAATGTGGGGGCTAATAGGATGGCAGCTGAGAGACAGATACTGCAGAACCATGTTTaGTACCAAATCTTGATTGTT | + |
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Preference number: 5 (lower is better) Translates to: SPGQANVGANRMAAERQILQNHV*YQILIV Trigger: AACAATCAAGATTTGGTACAAAACATGGTTCTGCAG...TATCTGTCTCTCAGCTGCCATCCTATTAGCCCCCACATTGGCTTGGCCTGGGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS GCA 72 bp | CGGGTGGAAGAGAGCCTGCATGCAGGTCACTGGAGTTaGAGAGGGTCTCGTGGTCTGGGCAGCAGTCTGATA | + |
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Preference number: 6 (lower is better) Translates to: RVEESLHAGHWS*RGSRGLGSSLI Trigger: TATCAGACTGCTGCCCAGACCACGAGACCCTCTGCAACTCCAGTGACCTGCATGCAGGCTCTCTTCCACCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS CCA 72 bp | AGGCTGGGGCTGGGAACAACTGCCTGCCTTCTGGTTTaGAATCACAGGGCCCAGCCACAGCAGGAGGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: RLGLGTTACLLV*NHRAQPQQEEK Trigger: TTTCTCCTCCTGCTGTGGCTGGGCCCTGTGATTCCAAACCAGAAGGCAGGCAGTTGTTCCCAGCCCCAGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS CCA 72 bp | GGCTCTCTTCCTGATTCCCTTCATAGTCACCGAGAGTaGCCTTCTGGAGAGGCTGTGGAGGAGCTGCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: GSLPDSLHSHRE*PSGEAVEELQN Trigger: GTTCTGCAGCTCCTCCACAGCCTCTCCAGAAGGCCACTCTCGGTGACTATGAAGGGAATCAGGAAGAGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS CCA 72 bp | GCCTCTCGGTCCTCAGCACCATCTGTAGCACCATCTTaGGAGTGTGAAAGGCTCTGTGGGTTACAGCATCCA | + |
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Preference number: 6 (lower is better) Translates to: ASRSSAPSVAPS*ECERLCGLQHP Trigger: TGGATGCTGTAACCCACAGAGCCTTTCACACTCCCAAGATGGTGCTACAGATGGTGCTGAGGACCGAGAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS TCA 72 bp | TGGAGGAGCTGCAGAACCATGTTTTGTACCAAATCTTaGTTGTTCCTGGCTGAGTCGAGTGGCCTCTCGGTC | + |
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Preference number: 6 (lower is better) Translates to: WRSCRTMFCTKS*LFLAESSGLSV Trigger: GACCGAGAGGCCACTCGACTCAGCCAGGAACAATCAAGATTTGGTACAAAACATGGTTCTGCAGCTCCTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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| CDS TCA 72 bp | AACCATGTTTTGTACCAAATCTTGATTGTTCCTGGCTaGGTCGAGTGGCCTCTCGGTCCTCAGCACCATCTG | + |
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Preference number: 6 (lower is better) Translates to: NHVLYQILIVPG*VEWPLGPQHHL Trigger: CAGATGGTGCTGAGGACCGAGAGGCCACTCGACTCAGCCAGGAACAATCAAGATTTGGTACAAAACATGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179384.3 |
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