Pregenerated sensors for SMARCE1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037935Ensembl transcript IDs: ENSMUST00000103133.4
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GATGGGCTGGAAGGGTTTAAAGCTATGGCTTTGGTGAGCACCACGTaGGCTGAAGGCAGGTATTTGGAAGAGTCGATTCTGCAGCAGCCA | + |
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Preference number: 1 (lower is better) Translates to: DGLEGFKAMALVSTT*AEGRYLEESILQQP Trigger: TGGCTGCTGCAGAATCGACTCTTCCAAATACCTGCCTTCAGCTCACGTGGTGCTCACCAAAGCCATAGCTTTAAACCCTTCCAGCCCATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR TCA 90 bp | GGAAAGCTGTGGATGGGCTGGAAGGGTTTAAAGCTATGGCTTTGGTaGGCACCACGTGAGCTGAAGGCAGGTATTTGGAAGAGTCGATTC | + |
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Preference number: 1 (lower is better) Translates to: GKLWMGWKGLKLWLW*APRELKAGIWKSRF Trigger: GAATCGACTCTTCCAAATACCTGCCTTCAGCTCACGTGGTGCTCACCAAAGCCATAGCTTTAAACCCTTCCAGCCCATCCACAGCTTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR TCA 90 bp | TGTCTGACATGGGACATAGAAAGGGTGAGTGAAGAGACCCCCTCATaGTTTCAAGAGGGCACTCTGTGTAAGTACACAAGACAGGGACTG | + |
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Preference number: 1 (lower is better) Translates to: CLTWDIERVSEETPS*FQEGTLCKYTRQGL Trigger: CAGTCCCTGTCTTGTGTACTTACACAGAGTGCCCTCTTGAAATCATGAGGGGGTCTCTTCACTCACCCTTTCTATGTCCCATGTCAGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR-3UTR CCA 90 bp | ACCCCCAGTGCCCCCAGAGGCATCTCTGTGATCTGTGTCTCACCAGTTTCTGGCACACAAGACAGGGACTaGGAAAGCTGTGGATGGGCT | + |
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Preference number: 2 (lower is better) Translates to: TPSAPRGISVICVSPVSGTQDRD*ESCGWA Trigger: AGCCCATCCACAGCTTTCCCAGTCCCTGTCTTGTGT...GCCAGAAACTGGTGAGACACAGATCACAGAGATGCCTCTGGGGGCACTGGGGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR-3UTR TCA 90 bp | CCTCATGATTTCAAGAGGGCACTCTGTGTAAGTACACAAGACAGGGACTGGGAAGAGCACCACGTGAGCTaGAGGCAGGTATTTGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: PHDFKRALCVSTQDRDWEEHHVS*RQVFGR Trigger: TCTTCCAAATACCTGCCTTCAGCTCACGTGGTGCTC...TTCCCAGTCCCTGTCTTGTGTACTTACACAGAGTGCCCTCTTGAAATCATGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR-3UTR CCA 90 bp | GAGGTTTTCATCACTGTGAAGTATGCTCACATGGATGAACAGCATTCCCATTTTGGACTGGGAAAGCTGTaGATGGGCTGGAAGGGTTTA | + |
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Preference number: 2 (lower is better) Translates to: EVFITVKYAHMDEQHSHFGLGKL*MGWKGL Trigger: TAAACCCTTCCAGCCCATCCACAGCTTTCCCAGTCC...AAAATGGGAATGCTGTTCATCCATGTGAGCATACTTCACAGTGATGAAAACCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR-3UTR CCA 90 bp | GAGCACACACTACAAACTATCTTGTTTCTAGTCTCTAAGACCACTACAGGGGTTAAGCTGTGGATGGGCTaGAAGGGTTTAAAGCTATGG | + |
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Preference number: 2 (lower is better) Translates to: EHTLQTILFLVSKTTTGVKLWMG*KGLKLW Trigger: CCATAGCTTTAAACCCTTCCAGCCCATCCACAGCTT...AACCCCTGTAGTGGTCTTAGAGACTAGAAACAAGATAGTTTGTAGTGTGTGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR-3UTR GCA 90 bp | GAGCACACACTACAAACTATCTTGTTTCTAGTCTCTAAGACCACTACAGGGGTTCCATTCCTTAAGCTCTaGCATCTATCGTGTCTTTGG | + |
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Preference number: 2 (lower is better) Translates to: EHTLQTILFLVSKTTTGVPFLKL*HLSCLW Trigger: CCAAAGACACGATAGATGGCAGAGCTTAAGGAATGG...AACCCCTGTAGTGGTCTTAGAGACTAGAAACAAGATAGTTTGTAGTGTGTGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR-3UTR CCA 90 bp | TATAAGAACATTCCATTCCTTAAGCTCTGCCATCTATCGTGTCTTTGGAAAGCCTCCTGGTGTCTGACATaGGACATAGAAAGGGTGAGT | + |
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Preference number: 2 (lower is better) Translates to: YKNIPFLKLCHLSCLWKASWCLT*DIERVS Trigger: ACTCACCCTTTCTATGTCCCATGTCAGACACCAGGA...GGCTTTCCAAAGACACGATAGATGGCAGAGCTTAAGGAATGGAATGTTCTTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR-3UTR TCA 90 bp | ACTTTGAAGTCTGTAGTCCATTATAAGAACATTCCATTCCTTAAGCTCTGCCATCATAGAAAGGGTGAGTaGAGAGACCCCCTCATGATT | + |
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Preference number: 2 (lower is better) Translates to: TLKSVVHYKNIPFLKLCHHRKGE*RDPLMI Trigger: AATCATGAGGGGGTCTCTTCACTCACCCTTTCTATG...ATGGCAGAGCTTAAGGAATGGAATGTTCTTATAATGGACTACAGACTTCAAAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR-3UTR CCA 90 bp | GAGCACACACTACAAACTATCTTGTTTCTAGTCTCTAAGACCACTACAGGGGTTATTTTCCTTTTGGAATaGGCCAATCACTTTGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: EHTLQTILFLVSKTTTGVIFLLE*ANHFEV Trigger: GACTTCAAAGTGATTGGCCCATTCCAAAAGGAAAAT...AACCCCTGTAGTGGTCTTAGAGACTAGAAACAAGATAGTTTGTAGTGTGTGCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR TCA 72 bp | TGGATGGGCTGGAAGGGTTTAAAGCTATGGCTTTGGTaGGCACCACGTGAGCTGAAGGCAGGTATTTGGAAG | + |
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Preference number: 3 (lower is better) Translates to: WMGWKGLKLWLW*APRELKAGIWK Trigger: CTTCCAAATACCTGCCTTCAGCTCACGTGGTGCTCACCAAAGCCATAGCTTTAAACCCTTCCAGCCCATCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR TCA 72 bp | GAAGGGTTTAAAGCTATGGCTTTGGTGAGCACCACGTaGGCTGAAGGCAGGTATTTGGAAGAGTCGATTCTG | + |
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Preference number: 3 (lower is better) Translates to: EGFKAMALVSTT*AEGRYLEESIL Trigger: CAGAATCGACTCTTCCAAATACCTGCCTTCAGCTCACGTGGTGCTCACCAAAGCCATAGCTTTAAACCCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR TCA 72 bp | TGGGACATAGAAAGGGTGAGTGAAGAGACCCCCTCATaGTTTCAAGAGGGCACTCTGTGTAAGTACACAAGA | + |
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Preference number: 3 (lower is better) Translates to: WDIERVSEETPS*FQEGTLCKYTR Trigger: TCTTGTGTACTTACACAGAGTGCCCTCTTGAAATCATGAGGGGGTCTCTTCACTCACCCTTTCTATGTCCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR GCA 72 bp | GTAGTCCATTATAAGAACATTCCATTCCTTAAGCTCTaGCATCTATCGTGTCTTTGGAAAGCCAATCTGGTA | + |
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Preference number: 3 (lower is better) Translates to: VVHYKNIPFLKL*HLSCLWKANLV Trigger: TACCAGATTGGCTTTCCAAAGACACGATAGATGGCAGAGCTTAAGGAATGGAATGTTCTTATAATGGACTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR TCA 90 bp | GAGCACACACTACAAACTATCTTGTTTCTAGTCTCTAAGACCACTACAGGGGTTTGCCAGAGGACGCCGTaGCCCGGCTGTTGGTGCCCG | + |
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Preference number: 4 (lower is better) Translates to: EHTLQTILFLVSKTTTGVCQRTP*PGCWCP Trigger: CGGGCACCAACAGCCGGGTCACGGCGTCCTCTGGCA...AACCCCTGTAGTGGTCTTAGAGACTAGAAACAAGATAGTTTGTAGTGTGTGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR GCA 90 bp | CCTCATGATTTCAAGAGGGCACTCTGTGTAAGTACACAAGACAGGGACTGGGAACCTCAGGGGCCATGCTaGTCTGACTGCGCTCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: PHDFKRALCVSTQDRDWEPQGPC*SDCAQP Trigger: AGGCTGAGCGCAGTCAGAGCAGCATGGCCCCTGAGG...TTCCCAGTCCCTGTCTTGTGTACTTACACAGAGTGCCCTCTTGAAATCATGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR CCA 90 bp | GCATTAGGCTATGATGCTGAGGGTTCAAAGACCTTCATGTTGTATCAACGGAAACTCGTCTTCTGGCACTaGGTCTGTGGGCGGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: ALGYDAEGSKTFMLYQRKLVFWH*VCGRLL Trigger: GAGGAGCCGCCCACAGACCCAGTGCCAGAAGACGAG...TTTCCGTTGATACAACATGAAGGTCTTTGAACCCTCAGCATCATAGCCTAATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR TCA 90 bp | ACTTTGAAGTCTGTAGTCCATTATAAGAACATTCCATTCCTTAAGCTCTGCCATGGGGCCATGCTGCTCTaGCTGCGCTCAGCCTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: TLKSVVHYKNIPFLKLCHGAMLL*LRSACS Trigger: AGAGCAGGCTGAGCGCAGTCAGAGCAGCATGGCCCC...ATGGCAGAGCTTAAGGAATGGAATGTTCTTATAATGGACTACAGACTTCAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR GCA 90 bp | GCATTAGGCTATGATGCTGAGGGTTCAAAGACCTTCATGTTGTATCAACGGAAATTCTCCCTCTCCTCTTaGCTCTTGCGGGCTTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: ALGYDAEGSKTFMLYQRKFSLSS*LLRACS Trigger: GGAACAAGCCCGCAAGAGGCAAGAGGAGAGGGAGAA...TTTCCGTTGATACAACATGAAGGTCTTTGAACCCTCAGCATCATAGCCTAATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR GCA 90 bp | GCTATGATGCTGAGGGTTCAAAGACCTTCATGTTGTATCAACGGAAAAGTAAATCTTCCTCAGGGGCCATaGTGCTCTGACTGCGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: AMMLRVQRPSCCINGKVNLPQGP*CSDCAQ Trigger: CTGAGCGCAGTCAGAGCAGCATGGCCCCTGAGGAAG...ATTTACTTTTCCGTTGATACAACATGAAGGTCTTTGAACCCTCAGCATCATAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR GCA 90 bp | CCTCATGATTTCAAGAGGGCACTCTGTGTAAGTACACAAGACAGGGACTGGGAACTGTCTCCATCGGGATaGTCTCCTCATCTTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: PHDFKRALCVSTQDRDWELSPSG*SPHLSS Trigger: AGAAGAAAGATGAGGAGAGCATCCCGATGGAGACAG...TTCCCAGTCCCTGTCTTGTGTACTTACACAGAGTGCCCTCTTGAAATCATGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR CCA 90 bp | CCTCATGATTTCAAGAGGGCACTCTGTGTAAGTACACAAGACAGGGACTGGGAATGGCTTTGGAGGCTTTaGAATCGTAATGCCAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: PHDFKRALCVSTQDRDWEWLWRL*NRNARG Trigger: TCCTCTGGCATTACGATTCCAAAGCCTCCAAAGCCA...TTCCCAGTCCCTGTCTTGTGTACTTACACAGAGTGCCCTCTTGAAATCATGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR CCA 90 bp | GCTATGATGCTGAGGGTTCAAAGACCTTCATGTTGTATCAACGGAAAAGTAAATCTTCTTCTCGTCTTCTaGCACTGGGTCTGTGGGCGG | + |
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Preference number: 4 (lower is better) Translates to: AMMLRVQRPSCCINGKVNLLLVF*HWVCGR Trigger: CCGCCCACAGACCCAGTGCCAGAAGACGAGAAGAAG...ATTTACTTTTCCGTTGATACAACATGAAGGTCTTTGAACCCTCAGCATCATAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR GCA 90 bp | TATAAGAACATTCCATTCCTTAAGCTCTGCCATCTATCGTGTCTTTGGAAAGCCTTGTTCCTCCGCCTGTaGGATCTCAGCCGCAATCTT | + |
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Preference number: 4 (lower is better) Translates to: YKNIPFLKLCHLSCLWKALFLRL*DLSRNL Trigger: AAGATTGCGGCTGAGATCGCACAGGCGGAGGAACAA...GGCTTTCCAAAGACACGATAGATGGCAGAGCTTAAGGAATGGAATGTTCTTATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR GCA 90 bp | ACTTTGAAGTCTGTAGTCCATTATAAGAACATTCCATTCCTTAAGCTCTGCCATCCACTGTGGCGCTGTTaGTCTCTGAGCCCGTGTTAC | + |
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Preference number: 4 (lower is better) Translates to: TLKSVVHYKNIPFLKLCHPLWRC*SLSPCY Trigger: GTAACACGGGCTCAGAGAGCAACAGCGCCACAGTGG...ATGGCAGAGCTTAAGGAATGGAATGTTCTTATAATGGACTACAGACTTCAAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR CCA 90 bp | TCCATTATAAGAACATTCCATTCCTTAAGCTCTGCCATCTATCGTGTCTTTGGACCGTGTTACTGTCACTaGTCCCTTCCACCTCCATGC | + |
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Preference number: 4 (lower is better) Translates to: SIIRTFHSLSSAIYRVFGPCYCH*SLPPPC Trigger: GCATGGAGGTGGAAGGGACCAGTGACAGTAACACGG...TCCAAAGACACGATAGATGGCAGAGCTTAAGGAATGGAATGTTCTTATAATGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR CAA 72 bp | ATGCTCACATGGATGAACAGCATTCCCATTTTCCTTTaGGAATGGGCCAATCACTTTGAAGTCTGTAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: MLTWMNSIPIFL*EWANHFEVCSP Trigger: TGGACTACAGACTTCAAAGTGATTGGCCCATTCCAAAAGGAAAATGGGAATGCTGTTCATCCATGTGAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| 3UTR CAA 72 bp | GCATTCCCATTTTCCTTTTGGAATGGGCCAATCACTTaGAAGTCTGTAGTCCATTATAAGAACATTCCATTC | + |
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Preference number: 4 (lower is better) Translates to: AFPFSFWNGPIT*KSVVHYKNIPF Trigger: GAATGGAATGTTCTTATAATGGACTACAGACTTCAAAGTGATTGGCCCATTCCAAAAGGAAAATGGGAATGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS GCA 90 bp | CTTCTCCCTCTCCTCTTGCCTCTTGCGGGCTTGTTCCTCCGCCTGTaGGATCTCAGCCGCAATCTTCTCCATGTCTACTTCCACCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: LLPLLLPLAGLFLRL*DLSRNLLHVYFHLQ Trigger: CTGAAGGTGGAAGTAGACATGGAGAAGATTGCGGCTGAGATCGCACAGGCGGAGGAACAAGCCCGCAAGAGGCAAGAGGAGAGGGAGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR CAA 90 bp | TATAAGAACATTCCATTCCTTAAGCTCTGCCATCTATCGTGTCTTTGGAAAGCCCTTCTCCCTCTCCTCTaGCCTCTTGCGGGCTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: YKNIPFLKLCHLSCLWKALLPLL*PLAGLF Trigger: GAACAAGCCCGCAAGAGGCAAGAGGAGAGGGAGAAG...GGCTTTCCAAAGACACGATAGATGGCAGAGCTTAAGGAATGGAATGTTCTTATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS-3UTR CAA 90 bp | GAGGTTTTCATCACTGTGAAGTATGCTCACATGGATGAACAGCATTCCCATTTTGGCTTTGTTCGCCACTaGCTCTTCCTCAGGGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: EVFITVKYAHMDEQHSHFGFVRH*LFLRGH Trigger: ATGGCCCCTGAGGAAGAGCAAGTGGCGAACAAAGCC...AAAATGGGAATGCTGTTCATCCATGTGAGCATACTTCACAGTGATGAAAACCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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| CDS GCA 72 bp | CTCCTCTTGCCTCTTGCGGGCTTGTTCCTCCGCCTGTaGGATCTCAGCCGCAATCTTCTCCATGTCTACTTC | + |
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Preference number: 6 (lower is better) Translates to: LLLPLAGLFLRL*DLSRNLLHVYF Trigger: GAAGTAGACATGGAGAAGATTGCGGCTGAGATCGCACAGGCGGAGGAACAAGCCCGCAAGAGGCAAGAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103133.4 |
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