RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMARCC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032481

Ensembl transcript IDs: ENSMUST00000088716.12, ENSMUST00000197480.5, ENSMUST00000197984.5, ENSMUST00000198211.2, ENSMUST00000199896.2

Found 447 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGAGGGACCCCATCTGCAGGAGGAGGCGGCTGCTGCTGCTGTGGTaGAGGAGGATTCATGCAATGTGGCTGTGCAGAGTCCAAGAGCCA +
Preference number: 1 (lower is better)
Translates to: WRDPICRRRRLLLLW*RRIHAMWLCRVQEP
Trigger: TGGCTCTTGGACTCTGCACAGCCACATTGCATGAATCCTCCTCCACCACAGCAGCAGCAGCCGCCTCCTCCTGCAGATGGGGTCCCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
3UTR TCA 90 bp CCCAAGGCTCTGGAGTCATTAGCTCTAGCTCCAGGACTCTGGCGGTaGCGTGGGCTCCTGGTTAGAGGAAAACCAAGAGTCTTAAAGGCA +
Preference number: 1 (lower is better)
Translates to: PKALESLALAPGLWR*RGLLVRGKPRVLKA
Trigger: TGCCTTTAAGACTCTTGGTTTTCCTCTAACCAGGAGCCCACGTCACCGCCAGAGTCCTGGAGCTAGAGCTAATGACTCCAGAGCCTTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR GCA 90 bp AAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTaGTGGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGAGGGC +
Preference number: 1 (lower is better)
Translates to: KQSPIPPLGLRGEGK*WSQFTLGENGGKEG
Trigger: GCCCTCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR CCA 90 bp CAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCTaGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGAGGGCAAC +
Preference number: 1 (lower is better)
Translates to: QSPIPPLGLRGEGKC*SQFTLGENGGKEGN
Trigger: GTTGCCCTCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR TCA 90 bp TGTGAGGTCTCAGAATGTGAGGTACAGGAGGCTGCTCATCACATGTaGGCATTCCCACTCCCGTTCTGCACCTCAGTACCGCTTAAGAAC +
Preference number: 1 (lower is better)
Translates to: CEVSECEVQEAAHHM*AFPLPFCTSVPLKN
Trigger: GTTCTTAAGCGGTACTGAGGTGCAGAACGGGAGTGGGAATGCTCACATGTGATGAGCAGCCTCCTGTACCTCACATTCTGAGACCTCACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR TCA 90 bp GAATTGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATaGCCCAGGTTTGCTCATAACCTTCTACAGCTCCAGCCTCAAGTG +
Preference number: 1 (lower is better)
Translates to: ELWGEGSWTCCWSCR*PRFAHNLLQLQPQV
Trigger: CACTTGAGGCTGGAGCTGTAGAAGGTTATGAGCAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACAATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
3UTR CCA 90 bp ACTAGGTACAGTGGCATGTTCTTCCAGGCACAGGGAAGTCCTTCATaGTCCTCACCAGGAAATCAAATCGAAAGGATACCCCCTTTCCCC +
Preference number: 1 (lower is better)
Translates to: TRYSGMFFQAQGSPS*SSPGNQIERIPPFP
Trigger: GGGGAAAGGGGGTATCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGAAGAACATGCCACTGTACCTAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR TCA 90 bp TCCAAGCCCGCCCCTCACAAAACTGGATGGGTGTTATTACAGGAATaGTACCTAACTGACAGTCATGGAAAGAGCTGTGTTGAAGTGTTG +
Preference number: 1 (lower is better)
Translates to: SKPAPHKTGWVLLQE*YLTDSHGKSCVEVL
Trigger: CAACACTTCAACACAGCTCTTTCCATGACTGTCAGTTAGGTATCATTCCTGTAATAACACCCATCCAGTTTTGTGAGGGGCGGGCTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR CCA 90 bp ATTATCAACAATGTAAAAACTATTCCCACTTGCATCTCTCAAAACTaGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCAGAG +
Preference number: 1 (lower is better)
Translates to: IINNVKTIPTCISQN*KAITLQTSGYRQAE
Trigger: CTCTGCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAGTTTTTACATTGTTGATAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp AGAGAATGGAGGGAAGGAGGGCAACCCTGGCTGCGGTCAGAAGACACCGGGGTTAGTGGCCGAGGCGGGTaGGCCTGGAGCAGGAGGTGG +
Preference number: 2 (lower is better)
Translates to: REWREGGQPWLRSEDTGVSGRGG*AWSRRW
Trigger: CCACCTCCTGCTCCAGGCCCACCCGCCTCGGCCACT...AACCCCGGTGTCTTCTGACCGCAGCCAGGGTTGCCCTCCTTCCCTCCATTCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp TGCCATCCCCATTCCTGCTTGTGGTGGCTGTGGAGGCTCTTGTATCTTCCAGGCTGGAGGGACCCCATCTaGAGGAGGAGGCGGCTGCTG +
Preference number: 2 (lower is better)
Translates to: CHPHSCLWWLWRLLYLPGWRDPI*RRRRLL
Trigger: CAGCAGCCGCCTCCTCCTGCAGATGGGGTCCCTCCA...GCCTGGAAGATACAAGAGCCTCCACAGCCACCACAAGCAGGAATGGGGATGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
3UTR CAA 90 bp CCCCTAGGACTCCGGGGAGAAGGCAAGTGCTGGAGTCAATTTACTTaGGGAGAGAATGGAGGGAAGGAGGGCAACCCTGGCTGCGGTCAG +
Preference number: 2 (lower is better)
Translates to: PLGLRGEGKCWSQFT*GENGGKEGNPGCGQ
Trigger: CTGACCGCAGCCAGGGTTGCCCTCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCCCGGAGTCCTAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCCATTGCCATCCCCATTCCTaGTTGTGGTGGCTGTGGAGG +
Preference number: 2 (lower is better)
Translates to: REGGREGGRKEAGKTKTHCHPHS*LWWLWR
Trigger: CCTCCACAGCCACCACAAGCAGGAATGGGGATGGCA...ATGGGTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACACATGTAATGTTTATTaGGGTGGCGAGGGTAGGCCC +
Preference number: 2 (lower is better)
Translates to: REGGREGGREERSWQNQNTCNVY*GGEGRP
Trigger: GGGCCTACCCTCGCCACCCCAATAAACATTACATGT...GTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp CCAACTCTGAAAGCTCACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCCATCCCCATTCCTaGTTGTGGTGGCTGTGGAGG +
Preference number: 2 (lower is better)
Translates to: PTLKAHAALGKTTTMFQSCHPHS*LWWLWR
Trigger: CCTCCACAGCCACCACAAGCAGGAATGGGGATGGCA...GGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGTGAGCTTTCAGAGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCTCTGAAAGCTCACGCTaGCCTTGGGAAAACAACCAC +
Preference number: 2 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCSESSR*PWENNH
Trigger: GTGGTTGTTTTCCCAAGGGCAGCGTGAGCTTTCAGA...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp TGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGTTTGGGCCTTCACAGGCACTaGACACACGTGGTTCACATA +
Preference number: 2 (lower is better)
Translates to: CGEKAHGLAAGLADDPGLGLHRH*THVVHI
Trigger: TATGTGAACCACGTGTGTGCAGTGCCTGTGAAGGCC...CAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
3UTR-3UTR CCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCCATACATGTAATGTTTATTaGGGTGGCGAGGGTAGGCCC +
Preference number: 2 (lower is better)
Translates to: REGGREGGRKEAGKTKTHTCNVY*GGEGRP
Trigger: GGGCCTACCCTCGCCACCCCAATAAACATTACATGT...ATGGGTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR CAA 90 bp GAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGTTaGCTCATAACCTTCTACAGCTCCAGCCTCAAGTGCGCTCTTCTG +
Preference number: 2 (lower is better)
Translates to: EKAHGLAAGLADDPG*LITFYSSSLKCALL
Trigger: CAGAAGAGCGCACTTGAGGCTGGAGCTGTAGAAGGTTATGAGCAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
3UTR-3UTR GCA 90 bp GGGAGAAGGCAAGTGCTGGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGAGACCTGCAGACCACCTaGCAACATCTGTCACACGGG +
Preference number: 2 (lower is better)
Translates to: GRRQVLESIYFGREWREGDLQTT*QHLSHG
Trigger: CCCGTGTGACAGATGTTGGCAGGTGGTCTGCAGGTC...TCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCCGGCTGCTGCTGCTGTaGTGGAGGAGGATTCATGCA +
Preference number: 2 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCRLLLL*WRRIHA
Trigger: TGCATGAATCCTCCTCCACCACAGCAGCAGCAGCCG...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp AGGGACTCTATCAGTAGCACCACTCTAGCTCAGATAAGCAGAAATAAGGTCACTGCCTGGAGCAGGAGGTaGAGGGACCCCATCTGCAGG +
Preference number: 2 (lower is better)
Translates to: RDSISSTTLAQISRNKVTAWSRR*RDPICR
Trigger: CCTGCAGATGGGGTCCCTCCACCTCCTGCTCCAGGC...AGTGACCTTATTTCTGCTTATCTGAGCTAGAGTGGTGCTACTGATAGAGTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp GAATGGCGGGAGAAGGTAGGAAGGGCTTGTTGTAAAGCTGTGCTCTTTGCTATCCCGAGACACAAGTCCTaGCATCCCCATTCCTGCTTG +
Preference number: 2 (lower is better)
Translates to: EWREKVGRACCKAVLFAIPRHKS*HPHSCL
Trigger: CAAGCAGGAATGGGGATGGCAGGACTTGTGTCTCGG...GATAGCAAAGAGCACAGCTTTACAACAAGCCCTTCCTACCTTCTCCCGCCATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCATCCTGCAAATCTTCTaGACAGACAACCAGAATGGC +
Preference number: 2 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCILQIF*TDNQNG
Trigger: GCCATTCTGGTTGTCTGTGCAGAAGATTTGCAGGAT...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCGAGGGCAACCCTGGCTaGGGTCAGAAGACACCGGGG +
Preference number: 2 (lower is better)
Translates to: HLSKLESNHITDLRLQTSEGNPG*GQKTPG
Trigger: CCCCGGTGTCTTCTGACCGCAGCCAGGGTTGCCCTC...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp CACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCGCTTCCAAAGCAGGATaGTGGGTAATGTCGTCCCAC +
Preference number: 2 (lower is better)
Translates to: HQNVISHTSLLQARLSMGASKAG*WVMSSH
Trigger: GTGGGACGACATTACCCAGCATCCTGCTTTGGAAGC...GCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
3UTR-3UTR CCA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGAAGGAGTGGAGAGACATaGGGCTTGTGCTTGGGGTTG +
Preference number: 2 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGRSGET*GLCLGL
Trigger: CAACCCCAAGCACAAGCCCCATGTCTCTCCACTCCT...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACAGGAGTGGAGAGACATaGGGCTTGTGCTTGGGGTTG +
Preference number: 2 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHRSGET*GLCLGL
Trigger: CAACCCCAAGCACAAGCCCCATGTCTCTCCACTCCT...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACGACAGGGGAGACACATaGTACTTTTTAAATGACCAG +
Preference number: 2 (lower is better)
Translates to: REGGREGGREERSWQNQNDRGDT*YFLNDQ
Trigger: CTGGTCATTTAAAAAGTACCATGTGTCTCCCCTGTC...GTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp CAACCAGAGGGAATTGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGGGCACTGCACACACGTaGTTCACATACACATGTAGA +
Preference number: 2 (lower is better)
Translates to: QPEGIVGRRLMDLLLVLQGTAHT*FTYTCR
Trigger: TCTACATGTGTATGTGAACCACGTGTGTGCAGTGCC...CTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACAATTCCCTCTGGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
3UTR-3UTR TCA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACCCACAGGCTTCCCAATaGGTGTCAACTAAGGACCTG +
Preference number: 2 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHPQASQ*VSTKDL
Trigger: CAGGTCCTTAGTTGACACTCATTGGGAAGCCTGTGG...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp CATTACAGACCTCAGGTTACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCTGCTGCTGCTGTGGTaGAGGAGGATTCATGCAATG +
Preference number: 2 (lower is better)
Translates to: HYRPQVTDKQSPIPPLGLLLLLW*RRIHAM
Trigger: CATTGCATGAATCCTCCTCCACCACAGCAGCAGCAG...GAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGTAACCTGAGGTCTGTAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp GAATGGCGGGAGAAGGTAGGAAGGGCTTGTTGTAAAGCTGTGCTCTTTGCTATCAGGTGTGTCCCTCTGTaGCTATCTCTTTCTGCCCAT +
Preference number: 2 (lower is better)
Translates to: EWREKVGRACCKAVLFAIRCVPL*LSLSAH
Trigger: ATGGGCAGAAAGAGATAGCCACAGAGGGACACACCT...GATAGCAAAGAGCACAGCTTTACAACAAGCCCTTCCTACCTTCTCCCGCCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp TTTTTGGTGGCAATTCCTCTGGGATGGCACTTAAACCTTACAGCCTCGCACTCTCACAGACAACCAGAATaGCGGGAGAAGGTAGGAAGG +
Preference number: 2 (lower is better)
Translates to: FLVAIPLGWHLNLTASHSHRQPE*REKVGR
Trigger: CCTTCCTACCTTCTCCCGCCATTCTGGTTGTCTGTG...AGAGTGCGAGGCTGTAAGGTTTAAGTGCCATCCCAGAGGAATTGCCACCAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCTTATCTTTGTTAGACTaGGAAAACCCCAACTCTGAA +
Preference number: 2 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCLSLLD*ENPNSE
Trigger: TTCAGAGTTGGGGTTTTCCCAGTCTAACAAAGATAA...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp GGGAGAAGGCAAGTGCTGGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGAGCAATTCCTCTGGGATaGCACTTAAACCTTACAGCC +
Preference number: 2 (lower is better)
Translates to: GRRQVLESIYFGREWREGAIPLG*HLNLTA
Trigger: GGCTGTAAGGTTTAAGTGCCATCCCAGAGGAATTGC...TCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR TCA 90 bp CCAACTCTGAAAGCTCACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGTCAACTAAGGACCTaGCACAAGAAGTATCAAGGA +
Preference number: 2 (lower is better)
Translates to: PTLKAHAALGKTTTMFQSCQLRT*HKKYQG
Trigger: TCCTTGATACTTCTTGTGTCAGGTCCTTAGTTGACA...GGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGTGAGCTTTCAGAGTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR CAA 90 bp GAAATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTaGGTGCACTTATGTGTGACAAGTCTCAGGGACTCTATCAGTAGC +
Preference number: 2 (lower is better)
Translates to: EIKSKGYPLSPALLI*VHLCVTSLRDSISS
Trigger: GCTACTGATAGAGTCCCTGAGACTTGTCACACATAAGTGCACCAAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR TCA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGATGTCAACTAAGGACCTaGCACAAGAAGTATCAAGGA +
Preference number: 2 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGCQLRT*HKKYQG
Trigger: TCCTTGATACTTCTTGTGTCAGGTCCTTAGTTGACA...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp TGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGTTTGAAACCAACAAACTCATaGTGTGAACATGGAAAGTTT +
Preference number: 2 (lower is better)
Translates to: CGEKAHGLAAGLADDPGLKPTNS*CEHGKF
Trigger: AAACTTTCCATGTTCACAGCATGAGTTTGTTGGTTT...CAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
3UTR-3UTR GCA 90 bp AGGGACTCTATCAGTAGCACCACTCTAGCTCAGATAAGCAGAAATAAGGTCACTGTGGAGGAGGATTCATaGAATGTGGCTGTGCAGAGT +
Preference number: 2 (lower is better)
Translates to: RDSISSTTLAQISRNKVTVEEDS*NVAVQS
Trigger: ACTCTGCACAGCCACATTGCATGAATCCTCCTCCAC...AGTGACCTTATTTCTGCTTATCTGAGCTAGAGTGGTGCTACTGATAGAGTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGCATTCCTGCTTGTGGTaGCTGTGGAGGCTCTTGTAT +
Preference number: 2 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQHSCLW*LWRLLY
Trigger: ATACAAGAGCCTCCACAGCCACCACAAGCAGGAATG...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCCATTCCTGCTTGTGGTaGCTGTGGAGGCTCTTGTAT +
Preference number: 2 (lower is better)
Translates to: HLSKLESNHITDLRLQTSHSCLW*LWRLLY
Trigger: ATACAAGAGCCTCCACAGCCACCACAAGCAGGAATG...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCAGGTGTGTCCCTCTGTaGCTATCTCTTTCTGCCCAT +
Preference number: 2 (lower is better)
Translates to: HLSKLESNHITDLRLQTSRCVPL*LSLSAH
Trigger: ATGGGCAGAAAGAGATAGCCACAGAGGGACACACCT...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGAGCTCACGCTGCCCTTaGGAAAACAACCACCATGTT +
Preference number: 2 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQSSRCP*ENNHHV
Trigger: AACATGGTGGTTGTTTTCCCAAGGGCAGCGTGAGCT...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR TCA 90 bp AGATGGAATGTGAGGTCTCAGAATGTGAGGTACAGGAGGCTGCTCATCACATGTATGGTACTTTTTAAATaGCCAGAGCACATCAGTCAC +
Preference number: 2 (lower is better)
Translates to: RWNVRSQNVRYRRLLITCMVLFK*PEHISH
Trigger: GTGACTGATGTGCTCTGGTCATTTAAAAAGTACCAT...ACATGTGATGAGCAGCCTCCTGTACCTCACATTCTGAGACCTCACATTCCATCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp TATTCAATGCAAACGAGGGACATTAAGCCACTTTCATTCATTTTCTCCCAAACTCCGAGACACAAGTCCTaGCATCCCCATTCCTGCTTG +
Preference number: 2 (lower is better)
Translates to: YSMQTRDIKPLSFIFSQTPRHKS*HPHSCL
Trigger: CAAGCAGGAATGGGGATGGCAGGACTTGTGTCTCGG...AGTTTGGGAGAAAATGAATGAAAGTGGCTTAATGTCCCTCGTTTGCATTGAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp GGGAGAAGGCAAGTGCTGGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGATTATCTTTGTTAGACTaGGAAAACCCCAACTCTGAA +
Preference number: 2 (lower is better)
Translates to: GRRQVLESIYFGREWREGLSLLD*ENPNSE
Trigger: TTCAGAGTTGGGGTTTTCCCAGTCTAACAAAGATAA...TCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR TCA 90 bp TATTCAATGCAAACGAGGGACATTAAGCCACTTTCATTCATTTTCTCCCAAACTCCACAGGCTTCCCAATaGGTGTCAACTAAGGACCTG +
Preference number: 2 (lower is better)
Translates to: YSMQTRDIKPLSFIFSQTPQASQ*VSTKDL
Trigger: CAGGTCCTTAGTTGACACTCATTGGGAAGCCTGTGG...AGTTTGGGAGAAAATGAATGAAAGTGGCTTAATGTCCCTCGTTTGCATTGAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR TCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCCCCCACCAAGCCGCATaGGATAAAATGTTCAACATA +
Preference number: 2 (lower is better)
Translates to: HLSKLESNHITDLRLQTSPHQAA*DKMFNI
Trigger: TATGTTGAACATTTTATCTCATGCGGCTTGGTGGGG...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp TATTCAATGCAAACGAGGGACATTAAGCCACTTTCATTCATTTTCTCCCAAACTGGTGACGTGGGCTCCTaGTTAGAGGAAAACCAAGAG +
Preference number: 2 (lower is better)
Translates to: YSMQTRDIKPLSFIFSQTGDVGS*LEENQE
Trigger: CTCTTGGTTTTCCTCTAACCAGGAGCCCACGTCACC...AGTTTGGGAGAAAATGAATGAAAGTGGCTTAATGTCCCTCGTTTGCATTGAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGGAGAAGGCAAGTGCTaGAGTCAATTTACTTTGGGA +
Preference number: 2 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQGEGKC*SQFTLG
Trigger: TCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCC...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR GCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCACCATGTTCCAATCCTaGAAATCTTCTGCACAGACA +
Preference number: 2 (lower is better)
Translates to: HLSKLESNHITDLRLQTSTMFQS*KSSAQT
Trigger: TGTCTGTGCAGAAGATTTGCAGGATTGGAACATGGT...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CCA 90 bp TTTTCTCCCAAACTCTCAAAGCTCCTTTACCTCATTAGAACAAAACCTAAAGAACACAGACAACCAGAATaGCGGGAGAAGGTAGGAAGG +
Preference number: 2 (lower is better)
Translates to: FSPKLSKLLYLIRTKPKEHRQPE*REKVGR
Trigger: CCTTCCTACCTTCTCCCGCCATTCTGGTTGTCTGTG...TTCTTTAGGTTTTGTTCTAATGAGGTAAAGGAGCTTTGAGAGTTTGGGAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR TCA 90 bp TTTTCTCCCAAACTCTCAAAGCTCCTTTACCTCATTAGAACAAAACCTAAAGAATGGAAAGAGCTGTGTTaGAGTGTTGAACTTAGGTTC +
Preference number: 2 (lower is better)
Translates to: FSPKLSKLLYLIRTKPKEWKELC*SVELRF
Trigger: GAACCTAAGTTCAACACTTCAACACAGCTCTTTCCA...TTCTTTAGGTTTTGTTCTAATGAGGTAAAGGAGCTTTGAGAGTTTGGGAGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR CAA 90 bp AACTTAGGTTCTATAGATTATCAACAATGTAAAAACTATTCCCACTaGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGG +
Preference number: 2 (lower is better)
Translates to: NLGSIDYQQCKNYSH*HLSKLESNHITDLR
Trigger: CCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAGTTTTTACATTGTTGATAATCTATAGAACCTAAGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR GCA 72 bp TTGGGAGAGAATGGAGGGAAGGAGGGCAACCCTGGCTaGGGTCAGAAGACACCGGGGTTTTCCTGGAGGAAA +
Preference number: 3 (lower is better)
Translates to: LGENGGKEGNPG*GQKTPGFSWRK
Trigger: TTTCCTCCAGGAAAACCCCGGTGTCTTCTGACCGCAGCCAGGGTTGCCCTCCTTCCCTCCATTCTCTCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR CCA 72 bp TACTTTGGGAGAGAATGGAGGGAAGGAGGGCAACCCTaGCTGCGGTCAGAAGACACCGGGGTTTTCCTGGAG +
Preference number: 3 (lower is better)
Translates to: YFGREWREGGQP*LRSEDTGVFLE
Trigger: CTCCAGGAAAACCCCGGTGTCTTCTGACCGCAGCCAGGGTTGCCCTCCTTCCCTCCATTCTCTCCCAAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR GCA 72 bp CCTGCAAGAAAACCAAGGAAGCCGAGACACAAGTCCTaGCATCCCCATTCCTGCTTGTGGTGGCTGTGGAGG +
Preference number: 3 (lower is better)
Translates to: PARKPRKPRHKS*HPHSCLWWLWR
Trigger: CCTCCACAGCCACCACAAGCAGGAATGGGGATGGCAGGACTTGTGTCTCGGCTTCCTTGGTTTTCTTGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CAA 90 bp AGAGAATGGAGGGAAGGAGGGCAACCCTGGCTGCGGTCAGAAGACACCGGGGTTCCAGCTCTTCTCATCTaGGTGCACTTATGTGTGACA +
Preference number: 3 (lower is better)
Translates to: REWREGGQPWLRSEDTGVPALLI*VHLCVT
Trigger: TGTCACACATAAGTGCACCAAGATGAGAAGAGCTGG...AACCCCGGTGTCTTCTGACCGCAGCCAGGGTTGCCCTCCTTCCCTCCATTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR TCA 72 bp CTGGAGTCATTAGCTCTAGCTCCAGGACTCTGGCGGTaGCGTGGGCTCCTGGTTAGAGGAAAACCAAGAGTC +
Preference number: 3 (lower is better)
Translates to: LESLALAPGLWR*RGLLVRGKPRV
Trigger: GACTCTTGGTTTTCCTCTAACCAGGAGCCCACGTCACCGCCAGAGTCCTGGAGCTAGAGCTAATGACTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR GCA 72 bp AGGAAGCCGAGACACAAGTCCTGCCATCCCCATTCCTaGTTGTGGTGGCTGTGGAGGCTCTTGTATCTTCCA +
Preference number: 3 (lower is better)
Translates to: RKPRHKSCHPHS*LWWLWRLLYLP
Trigger: TGGAAGATACAAGAGCCTCCACAGCCACCACAAGCAGGAATGGGGATGGCAGGACTTGTGTCTCGGCTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR CCA 72 bp AGCCATAGAACCCCACTGAGGCAGCTGCTGACAAGCTaGGTACTCTTAGGAGGCCTTCAACTGCCATCCTTG +
Preference number: 3 (lower is better)
Translates to: SHRTPLRQLLTS*VLLGGLQLPSL
Trigger: CAAGGATGGCAGTTGAAGGCCTCCTAAGAGTACCCAGCTTGTCAGCAGCTGCCTCAGTGGGGTTCTATGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198211.2
3UTR TCA 72 bp GGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATaGCCCAGGTTTGCTCATAACCTTCTACAGCTCCAG +
Preference number: 3 (lower is better)
Translates to: GEGSWTCCWSCR*PRFAHNLLQLQ
Trigger: CTGGAGCTGTAGAAGGTTATGAGCAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
3UTR GCA 72 bp ATACTAATGTCAACACAACAGGACCTGCAGACCACCTaGCAACATCTGTCACACGGGGACAGGGGAGACACA +
Preference number: 3 (lower is better)
Translates to: ILMSTQQDLQTT*QHLSHGDRGDT
Trigger: TGTGTCTCCCCTGTCCCCGTGTGACAGATGTTGGCAGGTGGTCTGCAGGTCCTGTTGTGTTGACATTAGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR CCA 72 bp ATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCTaGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAG +
Preference number: 3 (lower is better)
Translates to: IPPLGLRGEGKC*SQFTLGENGGK
Trigger: CTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR GCA 72 bp GCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTaGAAATCTTCTGCACAGACAACCAGAATGGCGGGA +
Preference number: 3 (lower is better)
Translates to: AALGKTTTMFQS*KSSAQTTRMAG
Trigger: TCCCGCCATTCTGGTTGTCTGTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR TCA 72 bp CACCACAGGCTTCCCAATGAGTGTCAACTAAGGACCTaGCACAAGAAGTATCAAGGAGTGGAGAGACATGGG +
Preference number: 3 (lower is better)
Translates to: HHRLPNECQLRT*HKKYQGVERHG
Trigger: CCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGTTGACACTCATTGGGAAGCCTGTGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR TCA 72 bp GGCTTCCCCACAGATCTCAGTACTGAGTACACAACCTaGGTGTTCACACCAAAACGTTATCTCCCACACCTC +
Preference number: 3 (lower is better)
Translates to: GFPTDLSTEYTT*VFTPKRYLPHL
Trigger: GAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAGGTTGTGTACTCAGTACTGAGATCTGTGGGGAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
3UTR CCA 72 bp TGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTaGTTCACATACACATGTAGACAAAACACTCAGACA +
Preference number: 3 (lower is better)
Translates to: CALLAFTGTAHT*FTYTCRQNTQT
Trigger: TGTCTGAGTGTTTTGTCTACATGTGTATGTGAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
3UTR TCA 72 bp GGTCCTTGTGCCATTAGCACAGTCTCCATAACCCTGTaGCAACAGATGGAATGTGAGGTCTCAGAATGTGAG +
Preference number: 3 (lower is better)
Translates to: GPCAISTVSITL*QQMECEVSECE
Trigger: CTCACATTCTGAGACCTCACATTCCATCTGTTGTCACAGGGTTATGGAGACTGTGCTAATGGCACAAGGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR-3UTR CAA 90 bp TGTAACTCTTTATTCCATGGTGTCTATCCTAGCTGGGCACAGGAGGGATATCAACTTCAACTGCCATCCTaGGATTTCTGGTCCAAACTA +
Preference number: 3 (lower is better)
Translates to: CNSLFHGVYPSWAQEGYQLQLPS*DFWSKL
Trigger: TAGTTTGGACCAGAAATCCAAGGATGGCAGTTGAAG...TTGATATCCCTCCTGTGCCCAGCTAGGATAGACACCATGGAATAAAGAGTTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198211.2
3UTR TCA 72 bp GCCCCTCACAAAACTGGATGGGTGTTATTACAGGAATaGTACCTAACTGACAGTCATGGAAAGAGCTGTGTT +
Preference number: 3 (lower is better)
Translates to: APHKTGWVLLQE*YLTDSHGKSCV
Trigger: AACACAGCTCTTTCCATGACTGTCAGTTAGGTATCATTCCTGTAATAACACCCATCCAGTTTTGTGAGGGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR TCA 72 bp CAGATGAGATTCAAACTAGTCAGGTTTAATCATGAGTaGCAGAATCAGTGGCTTCCCCACAGATCTCAGTAC +
Preference number: 3 (lower is better)
Translates to: QMRFKLVRFNHE*QNQWLPHRSQY
Trigger: GTACTGAGATCTGTGGGGAAGCCACTGATTCTGTCACTCATGATTAAACCTGACTAGTTTGAATCTCATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
3UTR-3UTR CAA 90 bp TATTCAATGCAAACGAGGGACATTAAGCCACTTTCATTCATTTTCTCCCAAACTCCAGCTCTTCTCATCTaGGTGCACTTATGTGTGACA +
Preference number: 3 (lower is better)
Translates to: YSMQTRDIKPLSFIFSQTPALLI*VHLCVT
Trigger: TGTCACACATAAGTGCACCAAGATGAGAAGAGCTGG...AGTTTGGGAGAAAATGAATGAAAGTGGCTTAATGTCCCTCGTTTGCATTGAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR GCA 72 bp AAAACACTCAGACATCAAACTAAACCAACAAACTCATaGTGTGAACATGGAAAGTTTTATAAACCACTGGGC +
Preference number: 3 (lower is better)
Translates to: KTLRHQTKPTNS*CEHGKFYKPLG
Trigger: GCCCAGTGGTTTATAAAACTTTCCATGTTCACAGCATGAGTTTGTTGGTTTAGTTTGATGTCTGAGTGTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
3UTR CCA 72 bp AATGTAAAAACTATTCCCACTTGCATCTCTCAAAACTaGAAAGCAATCACATTACAGACCTCAGGTTACAGA +
Preference number: 3 (lower is better)
Translates to: NVKTIPTCISQN*KAITLQTSGYR
Trigger: TCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAGTTTTTACATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CAGGAGGAGGCGGCTGCTGCTGCTGTGGTGGAGGAGGATTCATGCAATGTGGCTGCCTGTGGCTCCAAGTaGGGCCATCCCCGGCCCTCC +
Preference number: 4 (lower is better)
Translates to: QEEAAAAAVVEEDSCNVAACGSK*GHPRPS
Trigger: GGAGGGCCGGGGATGGCCCCACTTGGAGCCACAGGC...AGCCACATTGCATGAATCCTCCTCCACCACAGCAGCAGCAGCCGCCTCCTCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCGCCTGTGGCTCCAAGTaGGGCCATCCCCGGCCCTCC +
Preference number: 4 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCACGSK*GHPRPS
Trigger: GGAGGGCCGGGGATGGCCCCACTTGGAGCCACAGGC...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGCTCCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTCTCCCAAAACTTGCTaGCCGGGCCCCCGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: SSSLKCALLAFTGTAHTWSPKTC*PGPRPS
Trigger: GGAAGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGA...CCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGGAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR TCA 90 bp TGGGGTGGCGAGGGTAGGCCCTATGTGTTTGGGGAAGGTTGGGAGGTTTGGAAGGGCAGGGACCTGAGGTaGTCGAAGATGCAGGGGCAC +
Preference number: 4 (lower is better)
Translates to: WGGEGRPYVFGEGWEVWKGRDLR*SKMQGH
Trigger: GTGCCCCTGCATCTTCGATCACCTCAGGTCCCTGCC...CTTCCAAACCTCCCAACCTTCCCCAAACACATAGGGCCTACCCTCGCCACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACTGCCGTTTGGTGCTGTaGGGGGTACCCGGGGTCCTA +
Preference number: 4 (lower is better)
Translates to: REGGREGGREERSWQNQNCRLVL*GVPGVL
Trigger: TAGGACCCCGGGTACCCCTCACAGCACCAAACGGCA...GTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TGGGGTGGCGAGGGTAGGCCCTATGTGTTTGGGGAAGGTTGGGAGGTTTGGAAGGGAGGCGGCTGCTGCTaGTGTGGTGGAGGAGGATAC +
Preference number: 4 (lower is better)
Translates to: WGGEGRPYVFGEGWEVWKGGGCC*CGGGGY
Trigger: GTATCCTCCTCCACCACAGCAGCAGCAGCCGCCTCC...CTTCCAAACCTCCCAACCTTCCCCAAACACATAGGGCCTACCCTCGCCACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088716.12
CDS-3UTR TCA 90 bp AGAGAATGGAGGGAAGGAGGGCAACCCTGGCTGCGGTCAGAAGACACCGGGGTTGCTGCCCCAAGAATGTaGCACAAGGTGCCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: REWREGGQPWLRSEDTGVAAPRM*HKVPPA
Trigger: AGCTGGAGGCACCTTGTGTCACATTCTTGGGGCAGC...AACCCCGGTGTCTTCTGACCGCAGCCAGGGTTGCCCTCCTTCCCTCCATTCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp GGGAATTGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGCTCTCCCAAAACTTaGTGGCCGGGCCCCCGTCCT +
Preference number: 4 (lower is better)
Translates to: GNCGEKAHGLAAGLADDPGSPKT*WPGPRP
Trigger: AGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCC...TGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACAATTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR GCA 90 bp TGGGGTGGCGAGGGTAGGCCCTATGTGTTTGGGGAAGGTTGGGAGGTTTGGAAGGGGAGGAGGTCCCATTaGCATGGGTCGACTCTCTGG +
Preference number: 4 (lower is better)
Translates to: WGGEGRPYVFGEGWEVWKGRRSH*HGSTLW
Trigger: CCAGAGAGTCGACCCATGGCAATGGGACCTCCTCCC...CTTCCAAACCTCCCAACCTTCCCCAAACACATAGGGCCTACCCTCGCCACCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCCATGGCATCATGCCAGGGTaGCCTGTGGCTCCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: REGGREGGRKEAGKTKTHGIMPG*PVAPSG
Trigger: CCCACTTGGAGCCACAGGCCACCCTGGCATGATGCC...ATGGGTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CAGGAGGAGGCGGCTGCTGCTGCTGTGGTGGAGGAGGATTCATGCAATGTGGCTCATGGAGCCAGGGCCTaGTATTTGACCTGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: QEEAAAAAVVEEDSCNVAHGARA*YLTWLG
Trigger: CCCCAACCAGGTCAAATACCAGGCCCTGGCTCCATG...AGCCACATTGCATGAATCCTCCTCCACCACAGCAGCAGCAGCCGCCTCCTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TGCCATCCCCATTCCTGCTTGTGGTGGCTGTGGAGGCTCTTGTATCTTCCAGGCCGACCTGGCATGGGCTaGCCAGGCATCATGGAGCCA +
Preference number: 4 (lower is better)
Translates to: CHPHSCLWWLWRLLYLPGRPGMG*PGIMEP
Trigger: TGGCTCCATGATGCCTGGCCAGCCCATGCCAGGTCG...GCCTGGAAGATACAAGAGCCTCCACAGCCACCACAAGCAGGAATGGGGATGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCGGGAGGAGGTCCCATTaGCATGGGTCGACTCTCTGG +
Preference number: 4 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCGRRSH*HGSTLW
Trigger: CCAGAGAGTCGACCCATGGCAATGGGACCTCCTCCC...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TGCCATCCCCATTCCTGCTTGTGGTGGCTGTGGAGGCTCTTGTATCTTCCAGGCTCTTGCGGGACTCTGTaGCTGTGGGAGGAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: CHPHSCLWWLWRLLYLPGSCGTL*LWEEEE
Trigger: CTCCTCCTCCTCCCACAGCCACAGAGTCCCGCAAGA...GCCTGGAAGATACAAGAGCCTCCACAGCCACCACAAGCAGGAATGGGGATGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TGGGGTGGCGAGGGTAGGCCCTATGTGTTTGGGGAAGGTTGGGAGGTTTGGAAGTTGGGGAGGATGGGGTaGCGGCATCTGATGGTGCAT +
Preference number: 4 (lower is better)
Translates to: WGGEGRPYVFGEGWEVWKLGRMG*RHLMVH
Trigger: ATGCACCATCAGATGCCGCCACCCCATCCTCCCCAA...CTTCCAAACCTCCCAACCTTCCCCAAACACATAGGGCCTACCCTCGCCACCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACGCCTGGTATTTGACCTaGTTGGGGAGGATGGGGTGG +
Preference number: 4 (lower is better)
Translates to: REGGREGGREERSWQNQNAWYLT*LGRMGW
Trigger: CCACCCCATCCTCCCCAACCAGGTCAAATACCAGGC...GTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCCATGCTGCCCCAAGAATGTaGCACAAGGTGCCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: REGGREGGRKEAGKTKTHAAPRM*HKVPPA
Trigger: AGCTGGAGGCACCTTGTGTCACATTCTTGGGGCAGC...ATGGGTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CCAACTCTGAAAGCTCACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCGGAGGAGGCGGCTGCTaGTGCTGTGGTGGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: PTLKAHAALGKTTTMFQSGGGGC*CCGGGG
Trigger: TCCTCCTCCACCACAGCAGCAGCAGCCGCCTCCTCC...GGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGTGAGCTTTCAGAGTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088716.12
CDS-3UTR CCA 90 bp CAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTTCACATACACTCTTGCGGGACTCTGTaGCTGTGGGAGGAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: QVRSSGLHRHCTHVVHIHSCGTL*LWEEEE
Trigger: CTCCTCCTCCTCCCACAGCCACAGAGTCCCGCAAGA...GTGTATGTGAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCCATCATGGAGCCAGGGCCTaGTATTTGACCTGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: REGGREGGRKEAGKTKTHHGARA*YLTWLG
Trigger: CCCCAACCAGGTCAAATACCAGGCCCTGGCTCCATG...ATGGGTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp GGGAATTGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGCTGCCCCAAGAATGTaGCACAAGGTGCCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: GNCGEKAHGLAAGLADDPAAPRM*HKVPPA
Trigger: AGCTGGAGGCACCTTGTGTCACATTCTTGGGGCAGC...TGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACAATTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR GCA 90 bp AGAGAATGGAGGGAAGGAGGGCAACCCTGGCTGCGGTCAGAAGACACCGGGGTTCTAAAAAGGCAACAGTaGTCATCACCGGGTTTCCCG +
Preference number: 4 (lower is better)
Translates to: REWREGGQPWLRSEDTGVLKRQQ*SSPGFP
Trigger: CGGGAAACCCGGTGATGAGCACTGTTGCCTTTTTAG...AACCCCGGTGTCTTCTGACCGCAGCCAGGGTTGCCCTCCTTCCCTCCATTCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCGTCCGCCTGTGGCTCCAAGTaGGGCCATCCCCGGCCCTCC +
Preference number: 4 (lower is better)
Translates to: SISSLSVASKAGCWVMSSACGSK*GHPRPS
Trigger: GGAGGGCCGGGGATGGCCCCACTTGGAGCCACAGGC...GGACGACATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCCATGATGTTTCCGGGCATTaGAGGCATACCAGGAGGGGT +
Preference number: 4 (lower is better)
Translates to: REGGREGGRKEAGKTKTHDVSGH*RHTRRG
Trigger: ACCCCTCCTGGTATGCCTCCAATGCCCGGAAACATC...ATGGGTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCGCCTGGAGCAGGAGGTaGAGGGACCCCATCTGCAGG +
Preference number: 4 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCAWSRR*RDPICR
Trigger: CCTGCAGATGGGGTCCCTCCACCTCCTGCTCCAGGC...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088716.12
CDS-3UTR TCA 90 bp CATTACAGACCTCAGGTTACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCTGCCGTTTGGTGCTGTaGGGGGTACCCGGGGTCCTA +
Preference number: 4 (lower is better)
Translates to: HYRPQVTDKQSPIPPLGLCRLVL*GVPGVL
Trigger: TAGGACCCCGGGTACCCCTCACAGCACCAAACGGCA...GAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGTAACCTGAGGTCTGTAATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp CTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGCCGTTTGGTGCTGTaGGGGGTACCCGGGGTCCTA +
Preference number: 4 (lower is better)
Translates to: LSVHTKTLSPTPHCCRLDCRLVL*GVPGVL
Trigger: TAGGACCCCGGGTACCCCTCACAGCACCAAACGGCA...GTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp TCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTCTCCCAAAACTTaGTGGCCGGGCCCCCGTCCT +
Preference number: 4 (lower is better)
Translates to: SHQNVISHTSLLQARLSMGSPKT*WPGPRP
Trigger: AGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCC...CATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp CCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTTCAGCTGGGTTGGTGACATaGTTCCCAAAGGCATCTTCT +
Preference number: 4 (lower is better)
Translates to: PASSALFWPSQALHTRGSAGLVT*FPKASS
Trigger: AGAAGATGCCTTTGGGAAGCATGTCACCAACCCAGC...TGAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR GCA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACGGCCAGAGCAGCTGCTaGGGCTGTGGCAACGTTTCC +
Preference number: 4 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHGQSSC*GCGNVS
Trigger: GGAAACGTTGCCACAGCCGCAGCAGCTGCTCTGGCC...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGAGGCCAGAGCAGCTGCTaGGGCTGTGGCAACGTTTCC +
Preference number: 4 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGGQSSC*GCGNVS
Trigger: GGAAACGTTGCCACAGCCGCAGCAGCTGCTCTGGCC...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TACAGTGGCATGTTCTTCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAGGTGTCTGGCCATGCTaGTGCTGCTGCTCCATTTGC +
Preference number: 4 (lower is better)
Translates to: YSGMFFQAQGSPSWSSPGGVWPC*CCCSIC
Trigger: GCAAATGGAGCAGCAGCAGCAGCATGGCCAGACACC...TCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGAAGAACATGCCACTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCACACATGCCGTTTGGTaGTGTGAGGGGTACCCGGGG +
Preference number: 4 (lower is better)
Translates to: HQNVISHTSLLQARLSMGTHAVW*CEGYPG
Trigger: CCCCGGGTACCCCTCACAGCACCAAACGGCATGTGT...GCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCTCTCCCAAAACTTGCTaGCCGGGCCCCCGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCSPKTC*PGPRPS
Trigger: GGAAGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGA...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTCTCCCAAAACTTGCTaGCCGGGCCCCCGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: LSVHTKTLSPTPHCCRLDSPKTC*PGPRPS
Trigger: GGAAGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGA...GTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp CAGGAGGAGGCGGCTGCTGCTGCTGTGGTGGAGGAGGATTCATGCAATGTGGCTTCTGTCTCTCCTTTCTaGACTTCTGACTGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: QEEAAAAAVVEEDSCNVASVSPF*TSDWLF
Trigger: GAAGAGCCAGTCAGAAGTCCAGAAAGGAGAGACAGA...AGCCACATTGCATGAATCCTCCTCCACCACAGCAGCAGCAGCCGCCTCCTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGAGGGGATCATGCGACCTaGCATGGGCTGGCCAGGCAT +
Preference number: 4 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGGDHAT*HGLARH
Trigger: ATGCCTGGCCAGCCCATGCCAGGTCGCATGATCCCC...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CAGGAGGAGGCGGCTGCTGCTGCTGTGGTGGAGGAGGATTCATGCAATGTGGCTTCCATGGACTCCACATaGATTCTCAAGGGACTCCTT +
Preference number: 4 (lower is better)
Translates to: QEEAAAAAVVEEDSCNVASMDST*ILKGLL
Trigger: AAGGAGTCCCTTGAGAATCCATGTGGAGTCCATGGA...AGCCACATTGCATGAATCCTCCTCCACCACAGCAGCAGCAGCCGCCTCCTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCCATTGTCAGCTAACACATTaGAGTGAGGAGTGGGAGGAG +
Preference number: 4 (lower is better)
Translates to: REGGREGGRKEAGKTKTHCQLTH*SEEWEE
Trigger: CTCCTCCCACTCCTCACTTCAATGTGTTAGCTGACA...ATGGGTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp CATTACAGACCTCAGGTTACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCGGCTTTAGTAGCAGCTaGGGCCAGAGCAGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: HYRPQVTDKQSPIPPLGLGFSSS*GQSSCC
Trigger: GCAGCAGCTGCTCTGGCCTCAGCTGCTACTAAAGCC...GAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGTAACCTGAGGTCTGTAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp AACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAGGCTTTAGTAGCAGCTaGGGCCAGAGCAGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: NVISHTSLLQARLSMGLLGFSSS*GQSSCC
Trigger: GCAGCAGCTGCTCTGGCCTCAGCTGCTACTAAAGCC...TAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGAGGCTTTAGTAGCAGCTaGGGCCAGAGCAGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGGFSSS*GQSSCC
Trigger: GCAGCAGCTGCTCTGGCCTCAGCTGCTACTAAAGCC...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACCCAGGGCCTGGTATTTaGCCTGGTTGGGGAGGATGG +
Preference number: 4 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHPGPGI*PGWGGW
Trigger: CCATCCTCCCCAACCAGGTCAAATACCAGGCCCTGG...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp GAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGCCACTCCCAGTAGGGTaGATGTTGGCTGCCACAGCG +
Preference number: 4 (lower is better)
Translates to: ECSHQNVISHTSLLQARLPLPVG*MLAATA
Trigger: CGCTGTGGCAGCCAACATTCACCCTACTGGGAGTGG...CAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp CATTACAGACCTCAGGTTACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCCACTCCCAGTAGGGTaGATGTTGGCTGCCACAGCG +
Preference number: 4 (lower is better)
Translates to: HYRPQVTDKQSPIPPLGLPLPVG*MLAATA
Trigger: CGCTGTGGCAGCCAACATTCACCCTACTGGGAGTGG...GAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGTAACCTGAGGTCTGTAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TACAGTGGCATGTTCTTCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGACAACGCTGCTTTTGCTaGAGCAGATGCTACACGGGG +
Preference number: 4 (lower is better)
Translates to: YSGMFFQAQGSPSWSSPGQRCFC*SRCYTG
Trigger: CCCCGTGTAGCATCTGCTGCAGCAAAAGCAGCGTTG...TCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGAAGAACATGCCACTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp GAATCAGTGGCTTCCCCACAGATCTCAGTACTGAGTACACAACCTGAGTGTTCAGGCCAGAGCAGCTGCTaGGGCTGTGGCAACGTTTCC +
Preference number: 4 (lower is better)
Translates to: ESVASPQISVLSTQPECSGQSSC*GCGNVS
Trigger: GGAAACGTTGCCACAGCCGCAGCAGCTGCTCTGGCC...TGAACACTCAGGTTGTGTACTCAGTACTGAGATCTGTGGGGAAGCCACTGATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGATGGCCATGCTGCTGCTaGTGCTCCATTTGCTGCCGG +
Preference number: 4 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGWPCCC*CSICCR
Trigger: CCGGCAGCAAATGGAGCAGCAGCAGCAGCATGGCCA...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGCTCCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGGGGCTTTTCTGGGATTaGTGCATCTTCAATTTCAGC +
Preference number: 4 (lower is better)
Translates to: SSSLKCALLAFTGTAHTWGLFWD*CIFNFS
Trigger: GCTGAAATTGAAGATGCACCAATCCCAGAAAAGCCC...CCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGGAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CCA 90 bp CATTACAGACCTCAGGTTACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCTCTTGCGGGACTCTGTaGCTGTGGGAGGAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: HYRPQVTDKQSPIPPLGLSCGTL*LWEEEE
Trigger: CTCCTCCTCCTCCCACAGCCACAGAGTCCCGCAAGA...GAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGTAACCTGAGGTCTGTAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CATTACAGACCTCAGGTTACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCACCGGGTTTCCCGACTaGCTGAAAGGGACAGGCTGG +
Preference number: 4 (lower is better)
Translates to: HYRPQVTDKQSPIPPLGLTGFPD*LKGTGW
Trigger: CCAGCCTGTCCCTTTCAGCCAGTCGGGAAACCCGGT...GAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGTAACCTGAGGTCTGTAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACCTGATGGTGCATCAGTaGGTAGGGAGGGGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHLMVHQ*VGRGLL
Trigger: CAGCAGCCCCCTCCCTACCCACTGATGCACCATCAG...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TTTTTGGTGGCAATTCCTCTGGGATGGCACTTAAACCTTACAGCCTCGCACTCTGGGGATCATGCGACCTaGCATGGGCTGGCCAGGCAT +
Preference number: 4 (lower is better)
Translates to: FLVAIPLGWHLNLTASHSGDHAT*HGLARH
Trigger: ATGCCTGGCCAGCCCATGCCAGGTCGCATGATCCCC...AGAGTGCGAGGCTGTAAGGTTTAAGTGCCATCCCAGAGGAATTGCCACCAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TACAGTGGCATGTTCTTCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGACTGCTGCTGCTGTGGTaGAGGAGGATACATGCCGTT +
Preference number: 4 (lower is better)
Translates to: YSGMFFQAQGSPSWSSPGLLLLW*RRIHAV
Trigger: AACGGCATGTATCCTCCTCCACCACAGCAGCAGCAG...TCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGAAGAACATGCCACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088716.12
CDS-3UTR CCA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACCGGCTGCTGCTGCTGTaGTGGAGGAGGATACATGCC +
Preference number: 4 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHRLLLL*WRRIHA
Trigger: GGCATGTATCCTCCTCCACCACAGCAGCAGCAGCCG...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088716.12
3UTR CAA 72 bp CAACCAGAGGGAATTGTGGGGAGAAGGCTCATGGACTaGCTGCTGGTCTTGCAGATGACCCAGGTTTGCTCA +
Preference number: 4 (lower is better)
Translates to: QPEGIVGRRLMD*LLVLQMTQVCS
Trigger: TGAGCAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACAATTCCCTCTGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR TCA 90 bp CAGGAGGAGGCGGCTGCTGCTGCTGTGGTGGAGGAGGATTCATGCAATGTGGCTCTCCTCATCCTCTTGTaGGGAAGGATATGGATAAAT +
Preference number: 4 (lower is better)
Translates to: QEEAAAAAVVEEDSCNVALLILL*GRIWIN
Trigger: ATTTATCCATATCCTTCCTCACAAGAGGATGAGGAG...AGCCACATTGCATGAATCCTCCTCCACCACAGCAGCAGCAGCCGCCTCCTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp CCAACTCTGAAAGCTCACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCGCTAACACATTGAAGTaGGGAGTGGGAGGAGGTCCC +
Preference number: 4 (lower is better)
Translates to: PTLKAHAALGKTTTMFQSANTLK*GVGGGP
Trigger: GGGACCTCCTCCCACTCCTCACTTCAATGTGTTAGC...GGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGTGAGCTTTCAGAGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp CTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCATTTCGGCAGGGACCTGAGGTaGTCGAAGATGCAGGGGCAC +
Preference number: 4 (lower is better)
Translates to: LLQARLSMGLLISRRKHFGRDLR*SKMQGH
Trigger: GTGCCCCTGCATCTTCGATCACCTCAGGTCCCTGCC...GAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp CATTACAGACCTCAGGTTACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCGGTTTCCCGACTGGCTaGAAGGGACAGGCTGGTAAG +
Preference number: 4 (lower is better)
Translates to: HYRPQVTDKQSPIPPLGLGFPTG*KGQAGK
Trigger: CTTACCAGCCTGTCCCTTTCAGCCAGTCGGGAAACC...GAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGTAACCTGAGGTCTGTAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp CTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACGGTTTCCCGACTGGCTaGAAGGGACAGGCTGGTAAG +
Preference number: 4 (lower is better)
Translates to: LSVHTKTLSPTPHCCRLDGFPTG*KGQAGK
Trigger: CTTACCAGCCTGTCCCTTTCAGCCAGTCGGGAAACC...GTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp AGATGGAATGTGAGGTCTCAGAATGTGAGGTACAGGAGGCTGCTCATCACATGTCCAGGGCCTGGTATTTaGCCTGGTTGGGGAGGATGG +
Preference number: 4 (lower is better)
Translates to: RWNVRSQNVRYRRLLITCPGPGI*PGWGGW
Trigger: CCATCCTCCCCAACCAGGTCAAATACCAGGCCCTGG...ACATGTGATGAGCAGCCTCCTGTACCTCACATTCTGAGACCTCACATTCCATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp AGGGACTCTATCAGTAGCACCACTCTAGCTCAGATAAGCAGAAATAAGGTCACTGGCTCTCCCAAAACTTaGTGGCCGGGCCCCCGTCCT +
Preference number: 4 (lower is better)
Translates to: RDSISSTTLAQISRNKVTGSPKT*WPGPRP
Trigger: AGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCC...AGTGACCTTATTTCTGCTTATCTGAGCTAGAGTGGTGCTACTGATAGAGTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTTCATCCTCCTGTTGTAACTaGTTCTTCATCCTGCTCATC +
Preference number: 4 (lower is better)
Translates to: PASSALFWPSQALHTRGSSSCCN*FFILLI
Trigger: GATGAGCAGGATGAAGAAGCAGTTACAACAGGAGGA...TGAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR GCA 90 bp GCTTGTTGTAAAGCTGTGCTCTTTGCTATCTATCGTGTACTAGGTACAGTGGCATGGAGGGACCCCATCTaGAGGAGGAGGCGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: ACCKAVLFAIYRVLGTVAWRDPI*RRRRLL
Trigger: CAGCAGCCGCCTCCTCCTGCAGATGGGGTCCCTCCA...TGCCACTGTACCTAGTACACGATAGATAGCAAAGAGCACAGCTTTACAACAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088716.12
CDS-3UTR GCA 90 bp GTACTCTTAGGAGGCCTTCAACTGCCATCCTTGGATTTCTGGTCCAAACTAGGTTCACATGCCGTTTGGTaGTGTGAGGGGTACCCGGGG +
Preference number: 4 (lower is better)
Translates to: VLLGGLQLPSLDFWSKLGSHAVW*CEGYPG
Trigger: CCCCGGGTACCCCTCACAGCACCAAACGGCATGTGA...ACCTAGTTTGGACCAGAAATCCAAGGATGGCAGTTGAAGGCCTCCTAAGAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198211.2
CDS-3UTR CCA 90 bp AATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTGGTGCACTTTCTCCCAAAACTTGCTaGCCGGGCCCCCGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: NQIERIPPFPSSSHLGALSPKTC*PGPRPS
Trigger: GGAAGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGA...AAGTGCACCAAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACGGGCTTTTCTGGGATTaGTGCATCTTCAATTTCAGC +
Preference number: 4 (lower is better)
Translates to: REGGREGGREERSWQNQNGLFWD*CIFNFS
Trigger: GCTGAAATTGAAGATGCACCAATCCCAGAAAAGCCC...GTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CCTTCTACAGCTCCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACCTTCCAGGGCTTTTCTaGGATTGGTGCATCTTCAAT +
Preference number: 4 (lower is better)
Translates to: PSTAPASSALFWPSQALHLPGLF*DWCIFN
Trigger: ATTGAAGATGCACCAATCCCAGAAAAGCCCTGGAAG...GTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGGAGCTGTAGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CCA 90 bp CCTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGATCCTTCAAGCTTCTCTaGCTCGTCAGGCCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: PECSHQNVISHTSLLQARSFKLL*LVRPCA
Trigger: GGCACAGGGCCTGACGAGCCAGAGAAGCTTGAAGGA...TCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp TCACCAGGAAATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTGGCATCATGCCAGGGTaGCCTGTGGCTCCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: SPGNQIERIPPFPSSSHLGIMPG*PVAPSG
Trigger: CCCACTTGGAGCCACAGGCCACCCTGGCATGATGCC...AAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATTTCCTGGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp ACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCTGATGGTGCATCAGTaGGTAGGGAGGGGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: TSLLQARLSMGLLISRRKLMVHQ*VGRGLL
Trigger: CAGCAGCCCCCTCCCTACCCACTGATGCACCATCAG...CTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp GAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGCATGGAGCCAGGGCCTaGTATTTGACCTGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: ECSHQNVISHTSLLQARLHGARA*YLTWLG
Trigger: CCCCAACCAGGTCAAATACCAGGCCCTGGCTCCATG...CAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp CACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCGATGTTTCCGGGCATTaGAGGCATACCAGGAGGGGT +
Preference number: 4 (lower is better)
Translates to: HQNVISHTSLLQARLSMGDVSGH*RHTRRG
Trigger: ACCCCTCCTGGTATGCCTCCAATGCCCGGAAACATC...GCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp ATAAGCAGAAATAAGGTCACTTATAATGCCTTAAGGTGTGTCCCTCTGTGGCTAAGTGGCCGAGGCGGGTaGGCCTGGAGCAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: ISRNKVTYNALRCVPLWLSGRGG*AWSRRW
Trigger: CCACCTCCTGCTCCAGGCCCACCCGCCTCGGCCACT...TAGCCACAGAGGGACACACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088716.12
3UTR CAA 72 bp CATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGTTaGCTCATAACCTTCTACAGCTCCAGCCTCAAGTGC +
Preference number: 4 (lower is better)
Translates to: HGLAAGLADDPG*LITFYSSSLKC
Trigger: GCACTTGAGGCTGGAGCTGTAGAAGGTTATGAGCAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR TCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCGCTAACACATTGAAGTaGGGAGTGGGAGGAGGTCCC +
Preference number: 4 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCANTLK*GVGGGP
Trigger: GGGACCTCCTCCCACTCCTCACTTCAATGTGTTAGC...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACGCTTCCAACATGTTCTaGCACTTTATTCCAATCGTC +
Preference number: 4 (lower is better)
Translates to: REGGREGGREERSWQNQNASNMF*HFIPIV
Trigger: GACGATTGGAATAAAGTGTCAGAACATGTTGGAAGC...GTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp CTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCATTTCCCAGGGCCTGGTATTTaGCCTGGTTGGGGAGGATGG +
Preference number: 4 (lower is better)
Translates to: LLQARLSMGLLISRRKHFPGPGI*PGWGGW
Trigger: CCATCCTCCCCAACCAGGTCAAATACCAGGCCCTGG...GAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGGCTCTCCCAAAACTTaGTGGCCGGGCCCCCGTCCT +
Preference number: 4 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQGSPKT*WPGPRP
Trigger: AGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCC...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCTTCGCCGGCAAGCAGTaGTGGTTAAATATTCTTGAG +
Preference number: 4 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCFAGKQ*WLNILE
Trigger: CTCAAGAATATTTAACCAGCACTGCTTGCCGGCGAA...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CAGGAGGAGGCGGCTGCTGCTGCTGTGGTGGAGGAGGATTCATGCAATGTGGCTAGCACCTTTACTCTTTaGCAGTGTTTTCTTGGAGTA +
Preference number: 4 (lower is better)
Translates to: QEEAAAAAVVEEDSCNVASTFTL*QCFLGV
Trigger: TACTCCAAGAAAACACTGGCAAAGAGTAAAGGTGCT...AGCCACATTGCATGAATCCTCCTCCACCACAGCAGCAGCAGCCGCCTCCTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACCAACGCTGCTTTTGCTaGAGCAGATGCTACACGGGG +
Preference number: 4 (lower is better)
Translates to: LSVHTKTLSPTPHCCRLDQRCFC*SRCYTG
Trigger: CCCCGTGTAGCATCTGCTGCAGCAAAAGCAGCGTTG...GTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp AATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTGGTGCACTTTGGCCATGCTGCTGCTaGTGCTCCATTTGCTGCCGG +
Preference number: 4 (lower is better)
Translates to: NQIERIPPFPSSSHLGALWPCCC*CSICCR
Trigger: CCGGCAGCAAATGGAGCAGCAGCAGCAGCATGGCCA...AAGTGCACCAAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCTTGACGAAAGCTCACTaGCTTTCTGTTCTCATCCAC +
Preference number: 4 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCLTKAH*LSVLIH
Trigger: GTGGATGAGAACAGAAAGCCAGTGAGCTTTCGTCAA...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTTCACATACACTCTGTCTCTCCTTTCTaGACTTCTGACTGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: QVRSSGLHRHCTHVVHIHSVSPF*TSDWLF
Trigger: GAAGAGCCAGTCAGAAGTCCAGAAAGGAGAGACAGA...GTGTATGTGAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CCA 90 bp GGGAGAAGGCAAGTGCTGGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGAGAGGTCCCATTGCCATaGGTCGACTCTCTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: GRRQVLESIYFGREWREGEVPLP*VDSLGQ
Trigger: TTGACCCAGAGAGTCGACCCATGGCAATGGGACCTC...TCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCGTCCACCGGGTTTCCCGACTaGCTGAAAGGGACAGGCTGG +
Preference number: 4 (lower is better)
Translates to: SISSLSVASKAGCWVMSSTGFPD*LKGTGW
Trigger: CCAGCCTGTCCCTTTCAGCCAGTCGGGAAACCCGGT...GGACGACATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp TTGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCATTTCTTCCGACCTGGCATGGGCTaGCCAGGCATCATGGAGCCA +
Preference number: 4 (lower is better)
Translates to: LQARLSMGLLISRRKHFFRPGMG*PGIMEP
Trigger: TGGCTCCATGATGCCTGGCCAGCCCATGCCAGGTCG...GAAGAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp TCACCAGGAAATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTAGGGCACATGCCGTTTaGTGCTGTGAGGGGTACCCG +
Preference number: 4 (lower is better)
Translates to: SPGNQIERIPPFPSSSHLRAHAV*CCEGYP
Trigger: CGGGTACCCCTCACAGCACCAAACGGCATGTGCCCT...AAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATTTCCTGGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp TGGGGTGGCGAGGGTAGGCCCTATGTGTTTGGGGAAGGTTGGGAGGTTTGGAAGGCGCACGCCGTTCAATaGCATGAATACAATTATAAT +
Preference number: 4 (lower is better)
Translates to: WGGEGRPYVFGEGWEVWKAHAVQ*HEYNYN
Trigger: ATTATAATTGTATTCATGTCATTGAACGGCGTGCGC...CTTCCAAACCTCCCAACCTTCCCCAAACACATAGGGCCTACCCTCGCCACCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp CACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTGTCAGCTAACACATTaGAGTGAGGAGTGGGAGGAG +
Preference number: 4 (lower is better)
Translates to: HQNVISHTSLLQARLSMGCQLTH*SEEWEE
Trigger: CTCCTCCCACTCCTCACTTCAATGTGTTAGCTGACA...GCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp CTTTATTCCATGGTGTCTATCCTAGCTGGGCACAGGAGGGATATCAATAACTTCCCACTCCCAGTAGGGTaGATGTTGGCTGCCACAGCG +
Preference number: 4 (lower is better)
Translates to: LYSMVSILAGHRRDINNFPLPVG*MLAATA
Trigger: CGCTGTGGCAGCCAACATTCACCCTACTGGGAGTGG...GAAGTTATTGATATCCCTCCTGTGCCCAGCTAGGATAGACACCATGGAATAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198211.2
CDS-3UTR TCA 90 bp CACAGGAGGGATATCAATAACTTCTTGCTGATTAGCTGTTTCTACCAGAGCCATTGCCGTTTGGTGCTGTaGGGGGTACCCGGGGTCCTA +
Preference number: 4 (lower is better)
Translates to: HRRDINNFLLISCFYQSHCRLVL*GVPGVL
Trigger: TAGGACCCCGGGTACCCCTCACAGCACCAAACGGCA...ATGGCTCTGGTAGAAACAGCTAATCAGCAAGAAGTTATTGATATCCCTCCTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000198211.2
CDS-3UTR GCA 90 bp AAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGTTTGCTCATAACCTGGAACTGTAGAAGCTaGACCACCAGTCCAGCTAGT +
Preference number: 4 (lower is better)
Translates to: KAHGLAAGLADDPGLLITWNCRS*TTSPAS
Trigger: ACTAGCTGGACTGGTGGTGCAGCTTCTACAGTTCCA...GGTTATGAGCAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR GCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCTTTTCTGGGATTGGTaGATCTTCAATTTCAGCATC +
Preference number: 4 (lower is better)
Translates to: REGGREGGREERSWQNQNLFWDW*IFNFSI
Trigger: GATGCTGAAATTGAAGATGCACCAATCCCAGAAAAG...GTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp AGAGGGAATTGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACACTGCTTCTTCATCCTaGTCATCTAGATCTGCCACC +
Preference number: 4 (lower is better)
Translates to: RGNCGEKAHGLAAGLADDTASSS*SSRSAT
Trigger: GGTGGCAGATCTAGATGAGCAGGATGAAGAAGCAGT...GTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACAATTCCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR GCA 90 bp CTCATAACCTTCTACAGCTCCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCGACTTGGATCACCTTTaGTGGGATCTTCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: LITFYSSSLKCALLAFTGDLDHL*WDLHLP
Trigger: AGGAAGATGAAGATCCCAGCAAAGGTGATCCAAGTC...GCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGGAGCTGTAGAAGGTTATGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR GCA 90 bp TCACGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTGGGAGGAGGTCCCATTaGCATGGGTCGACTCTCTGG +
Preference number: 4 (lower is better)
Translates to: SRRKHFFLICSFQSRMLGGRRSH*HGSTLW
Trigger: CCAGAGAGTCGACCCATGGCAATGGGACCTCCTCCC...ACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACAGCACCTTTACTCTTTaGCAGTGTTTTCTTGGAGTA +
Preference number: 4 (lower is better)
Translates to: REGGREGGREERSWQNQNSTFTL*QCFLGV
Trigger: TACTCCAAGAAAACACTGGCAAAGAGTAAAGGTGCT...GTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCCTCCAACGCTGCTTTTaGTGCAGCAGATGCTACACG +
Preference number: 4 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCLQRCF*CSRCYT
Trigger: CGTGTAGCATCTGCTGCAGCAAAAGCAGCGTTGGAG...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp GAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTGCCAGCAATACAGCTaGTCTCCAAGCCATAGGTGG +
Preference number: 4 (lower is better)
Translates to: ECSHQNVISHTSLLQARLCQQYS*SPSHRW
Trigger: CCACCTATGGCTTGGAGAGCAGCTGTATTGCTGGCA...CAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp AATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTGGTGCACTTATACATGCCGTTTGGTaGTGTGAGGGGTACCCGGGG +
Preference number: 4 (lower is better)
Translates to: NQIERIPPFPSSSHLGALIHAVW*CEGYPG
Trigger: CCCCGGGTACCCCTCACAGCACCAAACGGCATGTAT...AAGTGCACCAAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088716.12
CDS-3UTR GCA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGCACATGCCGTTTGGTaGTGTGAGGGGTACCCGGGG +
Preference number: 4 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQAHAVW*CEGYPG
Trigger: CCCCGGGTACCCCTCACAGCACCAAACGGCATGTGC...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCCATACGATCCATTCGGGATaGGTTCTGAAGATCAAATCT +
Preference number: 4 (lower is better)
Translates to: REGGREGGRKEAGKTKTHTIHSG*VLKIKS
Trigger: AGATTTGATCTTCAGAACCCATCCCGAATGGATCGT...ATGGGTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCTTGGATCACCTTTGCTaGGATCTTCATCTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCLDHLC*DLHLPF
Trigger: GAAAGGAAGATGAAGATCCCAGCAAAGGTGATCCAA...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TGCCATCCCCATTCCTGCTTGTGGTGGCTGTGGAGGCTCTTGTATCTTCCAGGCTTGGATCACCTTTGCTaGGATCTTCATCTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: CHPHSCLWWLWRLLYLPGLDHLC*DLHLPF
Trigger: GAAAGGAAGATGAAGATCCCAGCAAAGGTGATCCAA...GCCTGGAAGATACAAGAGCCTCCACAGCCACCACAAGCAGGAATGGGGATGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp ACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGGAGGTCCCATTGCCATaGGTCGACTCTCTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: TSLLQARLSMGLLISRRKEVPLP*VDSLGQ
Trigger: TTGACCCAGAGAGTCGACCCATGGCAATGGGACCTC...CTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp TCACCAGGAAATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTTCCTTCAAGCTTCTCTaGCTCGTCAGGCCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: SPGNQIERIPPFPSSSHLSFKLL*LVRPCA
Trigger: GGCACAGGGCCTGACGAGCCAGAGAAGCTTGAAGGA...AAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATTTCCTGGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp ATCTCACGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGCATCATGCCAGGGTaGCCTGTGGCTCCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: ISRRKHFFLICSFQSRMLGIMPG*PVAPSG
Trigger: CCCACTTGGAGCCACAGGCCACCCTGGCATGATGCC...CAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCGTGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp ATCTCACGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGGGATCATGCGACCTaGCATGGGCTGGCCAGGCAT +
Preference number: 4 (lower is better)
Translates to: ISRRKHFFLICSFQSRMLGDHAT*HGLARH
Trigger: ATGCCTGGCCAGCCCATGCCAGGTCGCATGATCCCC...CAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCGTGAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp GTACTCTTAGGAGGCCTTCAACTGCCATCCTTGGATTTCTGGTCCAAACTAGGTGATGTTTCCGGGCATTaGAGGCATACCAGGAGGGGT +
Preference number: 4 (lower is better)
Translates to: VLLGGLQLPSLDFWSKLGDVSGH*RHTRRG
Trigger: ACCCCTCCTGGTATGCCTCCAATGCCCGGAAACATC...ACCTAGTTTGGACCAGAAATCCAAGGATGGCAGTTGAAGGCCTCCTAAGAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198211.2
CDS-3UTR CCA 90 bp TTTTTGGTGGCAATTCCTCTGGGATGGCACTTAAACCTTACAGCCTCGCACTCTGATGTTTCCGGGCATTaGAGGCATACCAGGAGGGGT +
Preference number: 4 (lower is better)
Translates to: FLVAIPLGWHLNLTASHSDVSGH*RHTRRG
Trigger: ACCCCTCCTGGTATGCCTCCAATGCCCGGAAACATC...AGAGTGCGAGGCTGTAAGGTTTAAGTGCCATCCCAGAGGAATTGCCACCAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR CAA 72 bp ATGTTTATTGGGGTGGCGAGGGTAGGCCCTATGTGTTaGGGGAAGGTTGGGAGGTTTGGAAGGGTTCCTAAA +
Preference number: 4 (lower is better)
Translates to: MFIGVARVGPMC*GKVGRFGRVPK
Trigger: TTTAGGAACCCTTCCAAACCTCCCAACCTTCCCCAAACACATAGGGCCTACCCTCGCCACCCCAATAAACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp GGGAATTGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCACTCCTCATCCTCTTGTaGGGAAGGATATGGATAAAT +
Preference number: 4 (lower is better)
Translates to: GNCGEKAHGLAAGLADDPLLILL*GRIWIN
Trigger: ATTTATCCATATCCTTCCTCACAAGAGGATGAGGAG...TGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACAATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR TCA 90 bp AGAGGGAATTGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACTCCTTTCTGGACTTCTaGCTGGCTCTTCATTCTTTG +
Preference number: 4 (lower is better)
Translates to: RGNCGEKAHGLAAGLADDSFLDF*LALHSL
Trigger: CAAAGAATGAAGAGCCAGTCAGAAGTCCAGAAAGGA...GTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACAATTCCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR TCA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCCTGGTTAAATATTCTTaGGGGTTTAGACGGTATGTG +
Preference number: 4 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCLVKYS*GFRRYV
Trigger: CACATACCGTCTAAACCCTCAAGAATATTTAACCAG...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp AACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAAGGATGCATTCGTCCTaGGTACGGCTTCCAACATGT +
Preference number: 4 (lower is better)
Translates to: NVISHTSLLQARLSMGLLRMHSS*VRLPTC
Trigger: ACATGTTGGAAGCCGTACTCAGGACGAATGCATCCT...TAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp AGATGGAATGTGAGGTCTCAGAATGTGAGGTACAGGAGGCTGCTCATCACATGTGCCTTTTCAGGCTGCTaGCCATCAGGATCTGTTTCC +
Preference number: 4 (lower is better)
Translates to: RWNVRSQNVRYRRLLITCAFSGC*PSGSVS
Trigger: GGAAACAGATCCTGATGGTCAGCAGCCTGAAAAGGC...ACATGTGATGAGCAGCCTCCTGTACCTCACATTCTGAGACCTCACATTCCATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp TGGGGTGGCGAGGGTAGGCCCTATGTGTTTGGGGAAGGTTGGGAGGTTTGGAAGCTTTACATGTATCAGTaGGCTCTTTGTTCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: WGGEGRPYVFGEGWEVWKLYMYQ*ALCSLH
Trigger: ATGAAGAGAACAAAGAGCTCACTGATACATGTAAAG...CTTCCAAACCTCCCAACCTTCCCCAAACACATAGGGCCTACCCTCGCCACCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACTCCATGTGGAAGTTCTaGCGCTCAGTAAGCAACTGC +
Preference number: 4 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHSMWKF*RSVSNC
Trigger: GCAGTTGCTTACTGAGCGTCAGAACTTCCACATGGA...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCCCACTCCCAGTAGGGTaGATGTTGGCTGCCACAGCG +
Preference number: 4 (lower is better)
Translates to: HLSKLESNHITDLRLQTSPLPVG*MLAATA
Trigger: CGCTGTGGCAGCCAACATTCACCCTACTGGGAGTGG...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCTCTAAAGACCACTCCTaGTCCATGGACTCCACATGG +
Preference number: 4 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCSKDHS*SMDSTW
Trigger: CCATGTGGAGTCCATGGATCAGGAGTGGTCTTTAGA...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACTGGAACTGTAGAAGCTaGACCACCAGTCCAGCTAGT +
Preference number: 4 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHWNCRS*TTSPAS
Trigger: ACTAGCTGGACTGGTGGTGCAGCTTCTACAGTTCCA...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACGCTGGGTTGGTGACATaGTTCCCAAAGGCATCTTCT +
Preference number: 4 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHAGLVT*FPKASS
Trigger: AGAAGATGCCTTTGGGAAGCATGTCACCAACCCAGC...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp GTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCGCTGGGTTGGTGACATaGTTCCCAAAGGCATCTTCT +
Preference number: 4 (lower is better)
Translates to: VISHTSLLQARLSMGLLIAGLVT*FPKASS
Trigger: AGAAGATGCCTTTGGGAAGCATGTCACCAACCCAGC...GATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCGCTGGGTTGGTGACATaGTTCCCAAAGGCATCTTCT +
Preference number: 4 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCAGLVT*FPKASS
Trigger: AGAAGATGCCTTTGGGAAGCATGTCACCAACCCAGC...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CCTTCTACAGCTCCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACATAATCAAACCAGGATaGGTAGCTGGGAATAATGAT +
Preference number: 4 (lower is better)
Translates to: PSTAPASSALFWPSQALHIIKPG*VAGNND
Trigger: ATCATTATTCCCAGCTACGCATCCTGGTTTGATTAT...GTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGGAGCTGTAGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR GCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCTCAGAAAGTGGAGGATaGATTCGTCCTGAGTACGGC +
Preference number: 4 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCSESGG*IRPEYG
Trigger: GCCGTACTCAGGACGAATGCATCCTCCACTTTCTGA...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TACAGTGGCATGTTCTTCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGACGCTCAGTAAGCAACTaGTGTCTCTGTTGTTCTAGA +
Preference number: 4 (lower is better)
Translates to: YSGMFFQAQGSPSWSSPGRSVSN*CLCCSR
Trigger: TCTAGAACAACAGAGACAGCAGTTGCTTACTGAGCG...TCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGAAGAACATGCCACTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATTGGCCATGCTGCTGCTaGTGCTCCATTTGCTGCCGG +
Preference number: 4 (lower is better)
Translates to: RRKHFFLICSFQSRMLGNWPCCC*CSICCR
Trigger: CCGGCAGCAAATGGAGCAGCAGCAGCAGCATGGCCA...ATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp CAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTTCACATACACACGATCCATTCGGGATaGGTTCTGAAGATCAAATCT +
Preference number: 4 (lower is better)
Translates to: QVRSSGLHRHCTHVVHIHTIHSG*VLKIKS
Trigger: AGATTTGATCTTCAGAACCCATCCCGAATGGATCGT...GTGTATGTGAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CCA 90 bp GAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCTTGCGGGACTCTGTaGCTGTGGGAGGAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: EESISSLSVASKAGCWVMSCGTL*LWEEEE
Trigger: CTCCTCCTCCTCCCACAGCCACAGAGTCCCGCAAGA...CATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp CTCATAACCTTCTACAGCTCCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCTTGGATCACCTTTGCTaGGATCTTCATCTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: LITFYSSSLKCALLAFTGLDHLC*DLHLPF
Trigger: GAAAGGAAGATGAAGATCCCAGCAAAGGTGATCCAA...GCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGGAGCTGTAGAAGGTTATGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CCA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGAGGTAAGGGTCCTCAATaGGAAGCCTCAGAAAGTGGA +
Preference number: 4 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGGKGPQ*EASESG
Trigger: TCCACTTTCTGAGGCTTCCCATTGAGGACCCTTACC...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAGGTAAGGGTCCTCAATaGGAAGCCTCAGAAAGTGGA +
Preference number: 4 (lower is better)
Translates to: NVISHTSLLQARLSMGLLGKGPQ*EASESG
Trigger: TCCACTTTCTGAGGCTTCCCATTGAGGACCCTTACC...TAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCGGTAAGGGTCCTCAATaGGAAGCCTCAGAAAGTGGA +
Preference number: 4 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCGKGPQ*EASESG
Trigger: TCCACTTTCTGAGGCTTCCCATTGAGGACCCTTACC...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCCTGATGGTGCATCAGTaGGTAGGGAGGGGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: HLSKLESNHITDLRLQTSLMVHQ*VGRGLL
Trigger: CAGCAGCCCCCTCCCTACCCACTGATGCACCATCAG...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCATTTCTTCCTTTTGGGGAGGATGGGGTaGCGGCATCTGATGGTGCAT +
Preference number: 4 (lower is better)
Translates to: QARLSMGLLISRRKHFFLLGRMG*RHLMVH
Trigger: ATGCACCATCAGATGCCGCCACCCCATCCTCCCCAA...AAGGAAGAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
3UTR CAA 72 bp TCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTaGGTGCACTTATGTGTGACAAGTCTCAGGGACTCT +
Preference number: 4 (lower is better)
Translates to: SKGYPLSPALLI*VHLCVTSLRDS
Trigger: AGAGTCCCTGAGACTTGTCACACATAAGTGCACCAAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp CGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGCTGCCCCAAGAATGTaGCACAAGGTGCCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: RRKHFFLICSFQSRMLGNAAPRM*HKVPPA
Trigger: AGCTGGAGGCACCTTGTGTCACATTCTTGGGGCAGC...ATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp TGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGTTTGGCGCACGCCGTTCAATaGCATGAATACAATTATAAT +
Preference number: 4 (lower is better)
Translates to: CGEKAHGLAAGLADDPGLAHAVQ*HEYNYN
Trigger: ATTATAATTGTATTCATGTCATTGAACGGCGTGCGC...CAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR TCA 90 bp CAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCATTTCTTCCTTGCTAACACATTGAAGTaGGGAGTGGGAGGAGGTCCC +
Preference number: 4 (lower is better)
Translates to: QARLSMGLLISRRKHFFLANTLK*GVGGGP
Trigger: GGGACCTCCTCCCACTCCTCACTTCAATGTGTTAGC...AAGGAAGAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp AGATGGAATGTGAGGTCTCAGAATGTGAGGTACAGGAGGCTGCTCATCACATGTTGTCAGCTAACACATTaGAGTGAGGAGTGGGAGGAG +
Preference number: 4 (lower is better)
Translates to: RWNVRSQNVRYRRLLITCCQLTH*SEEWEE
Trigger: CTCCTCCCACTCCTCACTTCAATGTGTTAGCTGACA...ACATGTGATGAGCAGCCTCCTGTACCTCACATTCTGAGACCTCACATTCCATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp TACAGTGGCATGTTCTTCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAGCTTCCAACATGTTCTaGCACTTTATTCCAATCGTC +
Preference number: 4 (lower is better)
Translates to: YSGMFFQAQGSPSWSSPGASNMF*HFIPIV
Trigger: GACGATTGGAATAAAGTGTCAGAACATGTTGGAAGC...TCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGAAGAACATGCCACTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTTCACATACACTTTGTACTTGTAAGCTaGCCCAAGAATGTGACACAA +
Preference number: 4 (lower is better)
Translates to: QVRSSGLHRHCTHVVHIHFVLVS*PKNVTQ
Trigger: TTGTGTCACATTCTTGGGGCAGCTTACAAGTACAAA...GTGTATGTGAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR GCA 90 bp CAACCAGAGGGAATTGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGCTTTTCTGGGATTGGTaGATCTTCAATTTCAGCATC +
Preference number: 4 (lower is better)
Translates to: QPEGIVGRRLMDLLLVLQLFWDW*IFNFSI
Trigger: GATGCTGAAATTGAAGATGCACCAATCCCAGAAAAG...CTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACAATTCCCTCTGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR GCA 90 bp CCTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGAACTGCTTCTTCATCCTaGTCATCTAGATCTGCCACC +
Preference number: 4 (lower is better)
Translates to: PECSHQNVISHTSLLQARTASSS*SSRSAT
Trigger: GGTGGCAGATCTAGATGAGCAGGATGAAGAAGCAGT...TCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp CCAACTCTGAAAGCTCACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCGACTTGGATCACCTTTaGTGGGATCTTCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: PTLKAHAALGKTTTMFQSDLDHL*WDLHLP
Trigger: AGGAAGATGAAGATCCCAGCAAAGGTGATCCAAGTC...GGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGTGAGCTTTCAGAGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TCACCAGGAAATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTCTCCAACGCTGCTTTTaGTGCAGCAGATGCTACACG +
Preference number: 4 (lower is better)
Translates to: SPGNQIERIPPFPSSSHLLQRCF*CSRCYT
Trigger: CGTGTAGCATCTGCTGCAGCAAAAGCAGCGTTGGAG...AAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATTTCCTGGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TACAGTGGCATGTTCTTCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGATACTTTCTTGACATGTaGTTCAACCAATTCCAGGGG +
Preference number: 4 (lower is better)
Translates to: YSGMFFQAQGSPSWSSPGYFLDM*FNQFQG
Trigger: CCCCTGGAATTGGTTGAAGCACATGTCAAGAAAGTA...TCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGAAGAACATGCCACTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CCAACTCTGAAAGCTCACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTTCCACTTTGTTTTCTaGCTTTTCAGGCTGCTGACC +
Preference number: 4 (lower is better)
Translates to: PTLKAHAALGKTTTMFQSFHFVF*LFRLLT
Trigger: GGTCAGCAGCCTGAAAAGGCAGAAAACAAAGTGGAA...GGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGTGAGCTTTCAGAGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCCGCTCAGTAAGCAACTaGTGTCTCTGTTGTTCTAGA +
Preference number: 4 (lower is better)
Translates to: HQNVISHTSLLQARLSMGRSVSN*CLCCSR
Trigger: TCTAGAACAACAGAGACAGCAGTTGCTTACTGAGCG...GCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp ATCTCACGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTGTCTGGCCATGCTaGTGCTGCTGCTCCATTTGC +
Preference number: 4 (lower is better)
Translates to: ISRRKHFFLICSFQSRMLGVWPC*CCCSIC
Trigger: GCAAATGGAGCAGCAGCAGCAGCATGGCCAGACACC...CAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCGTGAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCGGTGTCTGGCCATGCTaGTGCTGCTGCTCCATTTGC +
Preference number: 4 (lower is better)
Translates to: HLSKLESNHITDLRLQTSGVWPC*CCCSIC
Trigger: GCAAATGGAGCAGCAGCAGCAGCATGGCCAGACACC...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TACAGTGGCATGTTCTTCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAACGATCCATTCGGGATaGGTTCTGAAGATCAAATCT +
Preference number: 4 (lower is better)
Translates to: YSGMFFQAQGSPSWSSPGTIHSG*VLKIKS
Trigger: AGATTTGATCTTCAGAACCCATCCCGAATGGATCGT...TCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGAAGAACATGCCACTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCCATAATGAGGTAGATGTTTaGTCTAGTCAGACAGTTGTT +
Preference number: 4 (lower is better)
Translates to: REGGREGGRKEAGKTKTHNEVDV*SSQTVV
Trigger: AACAACTGTCTGACTAGACCAAACATCTACCTCATT...ATGGGTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGTTTGCTCATAACCTTGACGAAAGCTCACTaGCTTTCTGTTCTCATCCAC +
Preference number: 4 (lower is better)
Translates to: KAHGLAAGLADDPGLLITLTKAH*LSVLIH
Trigger: GTGGATGAGAACAGAAAGCCAGTGAGCTTTCGTCAA...GGTTATGAGCAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CCA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGATCTGTCTCTCCTTTCTaGACTTCTGACTGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGSVSPF*TSDWLF
Trigger: GAAGAGCCAGTCAGAAGTCCAGAAAGGAGAGACAGA...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACCATGGGTCGACTCTCTaGGTCAACTTGGTAGTTAAC +
Preference number: 4 (lower is better)
Translates to: LSVHTKTLSPTPHCCRLDHGSTL*VNLVVN
Trigger: GTTAACTACCAAGTTGACCCAGAGAGTCGACCCATG...GTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp GCTTGTTGTAAAGCTGTGCTCTTTGCTATCTATCGTGTACTAGGTACAGTGGCACAGCTGCTGCGGCTGTaGCAACGTTTCCTTCCGAAA +
Preference number: 4 (lower is better)
Translates to: ACCKAVLFAIYRVLGTVAQLLRL*QRFLPK
Trigger: TTTCGGAAGGAAACGTTGCCACAGCCGCAGCAGCTG...TGCCACTGTACCTAGTACACGATAGATAGCAAAGAGCACAGCTTTACAACAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TTGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCATTTCTTCCAGCTGCTGCGGCTGTaGCAACGTTTCCTTCCGAAA +
Preference number: 4 (lower is better)
Translates to: LQARLSMGLLISRRKHFFQLLRL*QRFLPK
Trigger: TTTCGGAAGGAAACGTTGCCACAGCCGCAGCAGCTG...GAAGAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGTTGGGGAGGATGGGGTaGCGGCATCTGATGGTGCAT +
Preference number: 4 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQLGRMG*RHLMVH
Trigger: ATGCACCATCAGATGCCGCCACCCCATCCTCCCCAA...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGCCTGGTATTTGACCTaGTTGGGGAGGATGGGGTGG +
Preference number: 4 (lower is better)
Translates to: RRKHFFLICSFQSRMLGNAWYLT*LGRMGW
Trigger: CCACCCCATCCTCCCCAACCAGGTCAAATACCAGGC...ATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCGCCTGGTATTTGACCTaGTTGGGGAGGATGGGGTGG +
Preference number: 4 (lower is better)
Translates to: HLSKLESNHITDLRLQTSAWYLT*LGRMGW
Trigger: CCACCCCATCCTCCCCAACCAGGTCAAATACCAGGC...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCATTTCTTCCTTCTTACACATGCCGTTTaGTGCTGTGAGGGGTACCCG +
Preference number: 4 (lower is better)
Translates to: QARLSMGLLISRRKHFFLLTHAV*CCEGYP
Trigger: CGGGTACCCCTCACAGCACCAAACGGCATGTGTAAG...AAGGAAGAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp TGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGTTTGCTCTTCATTCTTTGTTaGAATTCGTTGACGAAAGCT +
Preference number: 4 (lower is better)
Translates to: CGEKAHGLAAGLADDPGLLFILC*NSLTKA
Trigger: AGCTTTCGTCAACGAATTTCAACAAAGAATGAAGAG...CAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR TCA 90 bp TATTCAATGCAAACGAGGGACATTAAGCCACTTTCATTCATTTTCTCCCAAACTGGCAGGGACCTGAGGTaGTCGAAGATGCAGGGGCAC +
Preference number: 4 (lower is better)
Translates to: YSMQTRDIKPLSFIFSQTGRDLR*SKMQGH
Trigger: GTGCCCCTGCATCTTCGATCACCTCAGGTCCCTGCC...AGTTTGGGAGAAAATGAATGAAAGTGGCTTAATGTCCCTCGTTTGCATTGAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp ATAAGCAGAAATAAGGTCACTTATAATGCCTTAAGGTGTGTCCCTCTGTGGCTAGGTTTCCCGACTGGCTaGAAGGGACAGGCTGGTAAG +
Preference number: 4 (lower is better)
Translates to: ISRNKVTYNALRCVPLWLGFPTG*KGQAGK
Trigger: CTTACCAGCCTGTCCCTTTCAGCCAGTCGGGAAACC...TAGCCACAGAGGGACACACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp GCTTGTTGTAAAGCTGTGCTCTTTGCTATCTATCGTGTACTAGGTACAGTGGCAGCCTTTTCAGGCTGCTaGCCATCAGGATCTGTTTCC +
Preference number: 4 (lower is better)
Translates to: ACCKAVLFAIYRVLGTVAAFSGC*PSGSVS
Trigger: GGAAACAGATCCTGATGGTCAGCAGCCTGAAAAGGC...TGCCACTGTACCTAGTACACGATAGATAGCAAAGAGCACAGCTTTACAACAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp AGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCGTCCTCCATGTGGAAGTTCTaGCGCTCAGTAAGCAACTGC +
Preference number: 4 (lower is better)
Translates to: SISSLSVASKAGCWVMSSSMWKF*RSVSNC
Trigger: GCAGTTGCTTACTGAGCGTCAGAACTTCCACATGGA...GGACGACATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp AATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTGGTGCACTTTCCATGTGGAAGTTCTaGCGCTCAGTAAGCAACTGC +
Preference number: 4 (lower is better)
Translates to: NQIERIPPFPSSSHLGALSMWKF*RSVSNC
Trigger: GCAGTTGCTTACTGAGCGTCAGAACTTCCACATGGA...AAGTGCACCAAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TCACCAGGAAATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTTGGAACTGTAGAAGCTaGACCACCAGTCCAGCTAGT +
Preference number: 4 (lower is better)
Translates to: SPGNQIERIPPFPSSSHLWNCRS*TTSPAS
Trigger: ACTAGCTGGACTGGTGGTGCAGCTTCTACAGTTCCA...AAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATTTCCTGGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TTTTTGGTGGCAATTCCTCTGGGATGGCACTTAAACCTTACAGCCTCGCACTCTACTGCTTCTTCATCCTaGTCATCTAGATCTGCCACC +
Preference number: 4 (lower is better)
Translates to: FLVAIPLGWHLNLTASHSTASSS*SSRSAT
Trigger: GGTGGCAGATCTAGATGAGCAGGATGAAGAAGCAGT...AGAGTGCGAGGCTGTAAGGTTTAAGTGCCATCCCAGAGGAATTGCCACCAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CATTACAGACCTCAGGTTACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCTCCTCCTGTTGTAACTaGTTCTTCATCCTGCTCATC +
Preference number: 4 (lower is better)
Translates to: HYRPQVTDKQSPIPPLGLSSCCN*FFILLI
Trigger: GATGAGCAGGATGAAGAAGCAGTTACAACAGGAGGA...GAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGTAACCTGAGGTCTGTAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp GAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGGACTTGGATCACCTTTaGTGGGATCTTCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: ECSHQNVISHTSLLQARLDLDHL*WDLHLP
Trigger: AGGAAGATGAAGATCCCAGCAAAGGTGATCCAAGTC...CAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCTTCGCCGGCAAGCAGTaGTGGTTAAATATTCTTGAG +
Preference number: 4 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCFAGKQ*WLNILE
Trigger: CTCAAGAATATTTAACCAGCACTGCTTGCCGGCGAA...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTTCGCCGGCAAGCAGTaGTGGTTAAATATTCTTGAG +
Preference number: 4 (lower is better)
Translates to: LSVHTKTLSPTPHCCRLDFAGKQ*WLNILE
Trigger: CTCAAGAATATTTAACCAGCACTGCTTGCCGGCGAA...GTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGCAACGCTGCTTTTGCTaGAGCAGATGCTACACGGGG +
Preference number: 4 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQQRCFC*SRCYTG
Trigger: CCCCGTGTAGCATCTGCTGCAGCAAAAGCAGCGTTG...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp AAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCGTCCTCCAACGCTGCTTTTaGTGCAGCAGATGCTACACG +
Preference number: 4 (lower is better)
Translates to: KHFFLICSFQSRMLGNVVLQRCF*CSRCYT
Trigger: CGTGTAGCATCTGCTGCAGCAAAAGCAGCGTTGGAG...GACGACATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp CCTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGATTCCACTTTGTTTTCTaGCTTTTCAGGCTGCTGACC +
Preference number: 4 (lower is better)
Translates to: PECSHQNVISHTSLLQARFHFVF*LFRLLT
Trigger: GGTCAGCAGCCTGAAAAGGCAGAAAACAAAGTGGAA...TCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp CACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCACGATCCATTCGGGATaGGTTCTGAAGATCAAATCT +
Preference number: 4 (lower is better)
Translates to: HQNVISHTSLLQARLSMGTIHSG*VLKIKS
Trigger: AGATTTGATCTTCAGAACCCATCCCGAATGGATCGT...GCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp TGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGTTTGAATGAGGTAGATGTTTaGTCTAGTCAGACAGTTGTT +
Preference number: 4 (lower is better)
Translates to: CGEKAHGLAAGLADDPGLNEVDV*SSQTVV
Trigger: AACAACTGTCTGACTAGACCAAACATCTACCTCATT...CAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CCA 90 bp TGTGGGGAGAAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGTTTGCTTCAAATCAATGTCTaGAATGAGGTAGATGTTTGG +
Preference number: 4 (lower is better)
Translates to: CGEKAHGLAAGLADDPGLLQINV*NEVDVW
Trigger: CCAAACATCTACCTCATTCCAGACATTGATTTGAAG...CAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTTCTCCCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCGGGCTTTTCTGGGATTaGTGCATCTTCAATTTCAGC +
Preference number: 4 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCGLFWD*CIFNFS
Trigger: GCTGAAATTGAAGATGCACCAATCCCAGAAAAGCCC...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp GAATGGCGGGAGAAGGTAGGAAGGGCTTGTTGTAAAGCTGTGCTCTTTGCTATCCTTCCAGGGCTTTTCTaGGATTGGTGCATCTTCAAT +
Preference number: 4 (lower is better)
Translates to: EWREKVGRACCKAVLFAILPGLF*DWCIFN
Trigger: ATTGAAGATGCACCAATCCCAGAAAAGCCCTGGAAG...GATAGCAAAGAGCACAGCTTTACAACAAGCCCTTCCTACCTTCTCCCGCCATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTTGACGAAAGCTCACTaGCTTTCTGTTCTCATCCAC +
Preference number: 4 (lower is better)
Translates to: LSVHTKTLSPTPHCCRLDLTKAH*LSVLIH
Trigger: GTGGATGAGAACAGAAAGCCAGTGAGCTTTCGTCAA...GTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp AGGGACTCTATCAGTAGCACCACTCTAGCTCAGATAAGCAGAAATAAGGTCACTAGGATGCATTCGTCCTaGGTACGGCTTCCAACATGT +
Preference number: 4 (lower is better)
Translates to: RDSISSTTLAQISRNKVTRMHSS*VRLPTC
Trigger: ACATGTTGGAAGCCGTACTCAGGACGAATGCATCCT...AGTGACCTTATTTCTGCTTATCTGAGCTAGAGTGGTGCTACTGATAGAGTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp GAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGGCCTTTTCAGGCTGCTaGCCATCAGGATCTGTTTCC +
Preference number: 4 (lower is better)
Translates to: EESISSLSVASKAGCWVMAFSGC*PSGSVS
Trigger: GGAAACAGATCCTGATGGTCAGCAGCCTGAAAAGGC...CATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp AAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCGTCTCAGAAAGTGGAGGATaGATTCGTCCTGAGTACGGC +
Preference number: 4 (lower is better)
Translates to: KHFFLICSFQSRMLGNVVSESGG*IRPEYG
Trigger: GCCGTACTCAGGACGAATGCATCCTCCACTTTCTGA...GACGACATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp AAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCGTCCTAAAAAGGCAACAGTaGTCATCACCGGGTTTCCCG +
Preference number: 4 (lower is better)
Translates to: KHFFLICSFQSRMLGNVVLKRQQ*SSPGFP
Trigger: CGGGAAACCCGGTGATGAGCACTGTTGCCTTTTTAG...GACGACATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp AGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTTCCAGGGCTTTTCTaGGATTGGTGCATCTTCAAT +
Preference number: 4 (lower is better)
Translates to: SVHTKTLSPTPHCCRLDCLPGLF*DWCIFN
Trigger: ATTGAAGATGCACCAATCCCAGAAAAGCCCTGGAAG...ACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp AGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCGTCCTCTGTCTCTCCTTTCTaGACTTCTGACTGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: SISSLSVASKAGCWVMSSSVSPF*TSDWLF
Trigger: GAAGAGCCAGTCAGAAGTCCAGAAAGGAGAGACAGA...GGACGACATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp AATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTGGTGCACTTCATGGGTCGACTCTCTaGGTCAACTTGGTAGTTAAC +
Preference number: 4 (lower is better)
Translates to: NQIERIPPFPSSSHLGALHGSTL*VNLVVN
Trigger: GTTAACTACCAAGTTGACCCAGAGAGTCGACCCATG...AAGTGCACCAAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp ATAAGCAGAAATAAGGTCACTTATAATGCCTTAAGGTGTGTCCCTCTGTGGCTAGAGGTCCCATTGCCATaGGTCGACTCTCTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: ISRNKVTYNALRCVPLWLEVPLP*VDSLGQ
Trigger: TTGACCCAGAGAGTCGACCCATGGCAATGGGACCTC...TAGCCACAGAGGGACACACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TATTCAATGCAAACGAGGGACATTAAGCCACTTTCATTCATTTTCTCCCAAACTACCGGGTTTCCCGACTaGCTGAAAGGGACAGGCTGG +
Preference number: 4 (lower is better)
Translates to: YSMQTRDIKPLSFIFSQTTGFPD*LKGTGW
Trigger: CCAGCCTGTCCCTTTCAGCCAGTCGGGAAACCCGGT...AGTTTGGGAGAAAATGAATGAAAGTGGCTTAATGTCCCTCGTTTGCATTGAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TTTTCTCCCAAACTCTCAAAGCTCCTTTACCTCATTAGAACAAAACCTAAAGAACGACCTGGCATGGGCTaGCCAGGCATCATGGAGCCA +
Preference number: 4 (lower is better)
Translates to: FSPKLSKLLYLIRTKPKERPGMG*PGIMEP
Trigger: TGGCTCCATGATGCCTGGCCAGCCCATGCCAGGTCG...TTCTTTAGGTTTTGTTCTAATGAGGTAAAGGAGCTTTGAGAGTTTGGGAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR CAA 72 bp TGTTCACACCAAAACGTTATCTCCCACACCTCACTGTaGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCA +
Preference number: 4 (lower is better)
Translates to: CSHQNVISHTSL*QARLSMGLLIS
Trigger: TGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp GTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCGCGCACGCCGTTCAATaGCATGAATACAATTATAAT +
Preference number: 4 (lower is better)
Translates to: VISHTSLLQARLSMGLLIAHAVQ*HEYNYN
Trigger: ATTATAATTGTATTCATGTCATTGAACGGCGTGCGC...GATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp GAATGGCGGGAGAAGGTAGGAAGGGCTTGTTGTAAAGCTGTGCTCTTTGCTATCCTGGTTAAATATTCTTaGGGGTTTAGACGGTATGTG +
Preference number: 4 (lower is better)
Translates to: EWREKVGRACCKAVLFAILVKYS*GFRRYV
Trigger: CACATACCGTCTAAACCCTCAAGAATATTTAACCAG...GATAGCAAAGAGCACAGCTTTACAACAAGCCCTTCCTACCTTCTCCCGCCATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp ACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGGCTTCCAACATGTTCTaGCACTTTATTCCAATCGTC +
Preference number: 4 (lower is better)
Translates to: TSLLQARLSMGLLISRRKASNMF*HFIPIV
Trigger: GACGATTGGAATAAAGTGTCAGAACATGTTGGAAGC...CTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGAGGATGCATTCGTCCTaGGTACGGCTTCCAACATGT +
Preference number: 4 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQRMHSS*VRLPTC
Trigger: ACATGTTGGAAGCCGTACTCAGGACGAATGCATCCT...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp CCAACTCTGAAAGCTCACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCCTTTACATGTATCAGTaGGCTCTTTGTTCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: PTLKAHAALGKTTTMFQSLYMYQ*ALCSLH
Trigger: ATGAAGAGAACAAAGAGCTCACTGATACATGTAAAG...GGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGTGAGCTTTCAGAGTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp GAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTGGAACTGTAGAAGCTaGACCACCAGTCCAGCTAGT +
Preference number: 4 (lower is better)
Translates to: EESISSLSVASKAGCWVMWNCRS*TTSPAS
Trigger: ACTAGCTGGACTGGTGGTGCAGCTTCTACAGTTCCA...CATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp GGGAGAAGGCAAGTGCTGGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGATTTGTACTTGTAAGCTaGCCCAAGAATGTGACACAA +
Preference number: 4 (lower is better)
Translates to: GRRQVLESIYFGREWREGFVLVS*PKNVTQ
Trigger: TTGTGTCACATTCTTGGGGCAGCTTACAAGTACAAA...TCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGATTTGTACTTGTAAGCTaGCCCAAGAATGTGACACAA +
Preference number: 4 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGFVLVS*PKNVTQ
Trigger: TTGTGTCACATTCTTGGGGCAGCTTACAAGTACAAA...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CATTACAGACCTCAGGTTACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCTTTTCTGGGATTGGTaGATCTTCAATTTCAGCATC +
Preference number: 4 (lower is better)
Translates to: HYRPQVTDKQSPIPPLGLLFWDW*IFNFSI
Trigger: GATGCTGAAATTGAAGATGCACCAATCCCAGAAAAG...GAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGTAACCTGAGGTCTGTAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp AGGGACTCTATCAGTAGCACCACTCTAGCTCAGATAAGCAGAAATAAGGTCACTACTGCTTCTTCATCCTaGTCATCTAGATCTGCCACC +
Preference number: 4 (lower is better)
Translates to: RDSISSTTLAQISRNKVTTASSS*SSRSAT
Trigger: GGTGGCAGATCTAGATGAGCAGGATGAAGAAGCAGT...AGTGACCTTATTTCTGCTTATCTGAGCTAGAGTGGTGCTACTGATAGAGTCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp AACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAAGCACCTTTACTCTTTaGCAGTGTTTTCTTGGAGTA +
Preference number: 4 (lower is better)
Translates to: NVISHTSLLQARLSMGLLSTFTL*QCFLGV
Trigger: TACTCCAAGAAAACACTGGCAAAGAGTAAAGGTGCT...TAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCCTAAAAAGGCAACAGTaGTCATCACCGGGTTTCCCG +
Preference number: 4 (lower is better)
Translates to: HLSKLESNHITDLRLQTSLKRQQ*SSPGFP
Trigger: CGGGAAACCCGGTGATGAGCACTGTTGCCTTTTTAG...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp ATAAGCAGAAATAAGGTCACTTATAATGCCTTAAGGTGTGTCCCTCTGTGGCTATGCCAGCAATACAGCTaGTCTCCAAGCCATAGGTGG +
Preference number: 4 (lower is better)
Translates to: ISRNKVTYNALRCVPLWLCQQYS*SPSHRW
Trigger: CCACCTATGGCTTGGAGAGCAGCTGTATTGCTGGCA...TAGCCACAGAGGGACACACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGGGACTCTATCAGTAGCACCACTCTAGCTCAGATAAGCAGAAATAAGGTCACTCCAAAGGCATCTTCTTaGAACTGTAGAAGCTGCACC +
Preference number: 4 (lower is better)
Translates to: RDSISSTTLAQISRNKVTPKASS*NCRSCT
Trigger: GGTGCAGCTTCTACAGTTCCAAGAAGATGCCTTTGG...AGTGACCTTATTTCTGCTTATCTGAGCTAGAGTGGTGCTACTGATAGAGTCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTTTGGATCACCTTTGCTaGGATCTTCATCTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: SVHTKTLSPTPHCCRLDCLDHLC*DLHLPF
Trigger: GAAAGGAAGATGAAGATCCCAGCAAAGGTGATCCAA...ACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp TATTCAATGCAAACGAGGGACATTAAGCCACTTTCATTCATTTTCTCCCAAACTTCCTTCAAGCTTCTCTaGCTCGTCAGGCCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: YSMQTRDIKPLSFIFSQTSFKLL*LVRPCA
Trigger: GGCACAGGGCCTGACGAGCCAGAGAAGCTTGAAGGA...AGTTTGGGAGAAAATGAATGAAAGTGGCTTAATGTCCCTCGTTTGCATTGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
3UTR CAA 72 bp CACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTaGCTAATCTCACGAAGAAAGCATTTCTTCCTTATC +
Preference number: 4 (lower is better)
Translates to: HTSLLQARLSMG*LISRRKHFFLI
Trigger: GATAAGGAAGAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
3UTR CAA 72 bp ATCCTAGCTGGGCACAGGAGGGATATCAATAACTTCTaGCTGATTAGCTGTTTCTACCAGAGCCATAGAACC +
Preference number: 4 (lower is better)
Translates to: ILAGHRRDINNF*LISCFYQSHRT
Trigger: GGTTCTATGGCTCTGGTAGAAACAGCTAATCAGCAAGAAGTTATTGATATCCCTCCTGTGCCCAGCTAGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198211.2
CDS-3UTR TCA 90 bp CTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCATTTCCTCCTCATCCTCTTGTaGGGAAGGATATGGATAAAT +
Preference number: 4 (lower is better)
Translates to: LLQARLSMGLLISRRKHFLLILL*GRIWIN
Trigger: ATTTATCCATATCCTTCCTCACAAGAGGATGAGGAG...GAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp GAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGCTCTTCATTCTTTGTTaGAATTCGTTGACGAAAGCT +
Preference number: 4 (lower is better)
Translates to: ECSHQNVISHTSLLQARLLFILC*NSLTKA
Trigger: AGCTTTCGTCAACGAATTTCAACAAAGAATGAAGAG...CAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp AGGGACTCTATCAGTAGCACCACTCTAGCTCAGATAAGCAGAAATAAGGTCACTTCCTTTCTGGACTTCTaGCTGGCTCTTCATTCTTTG +
Preference number: 4 (lower is better)
Translates to: RDSISSTTLAQISRNKVTSFLDF*LALHSL
Trigger: CAAAGAATGAAGAGCCAGTCAGAAGTCCAGAAAGGA...AGTGACCTTATTTCTGCTTATCTGAGCTAGAGTGGTGCTACTGATAGAGTCCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGTTTGTACTTGTAAGCTaGCCCAAGAATGTGACACAA +
Preference number: 4 (lower is better)
Translates to: SHQNVISHTSLLQARLSMFVLVS*PKNVTQ
Trigger: TTGTGTCACATTCTTGGGGCAGCTTACAAGTACAAA...CATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGAATAATCAAACCAGGATaGGTAGCTGGGAATAATGAT +
Preference number: 4 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGIIKPG*VAGNND
Trigger: ATCATTATTCCCAGCTACGCATCCTGGTTTGATTAT...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp GTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCATAATCAAACCAGGATaGGTAGCTGGGAATAATGAT +
Preference number: 4 (lower is better)
Translates to: VISHTSLLQARLSMGLLIIIKPG*VAGNND
Trigger: ATCATTATTCCCAGCTACGCATCCTGGTTTGATTAT...GATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp GAATGGCGGGAGAAGGTAGGAAGGGCTTGTTGTAAAGCTGTGCTCTTTGCTATCCGAAGACCAAAGTTCTaGAAATCAATTGGTTTTTCC +
Preference number: 4 (lower is better)
Translates to: EWREKVGRACCKAVLFAIRRPKF*KSIGFS
Trigger: GGAAAAACCAATTGATTTGCAGAACTTTGGTCTTCG...GATAGCAAAGAGCACAGCTTTACAACAAGCCCTTCCTACCTTCTCCCGCCATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCATTTCTACTTTCTTGACATGTaGTTCAACCAATTCCAGGGG +
Preference number: 4 (lower is better)
Translates to: LLQARLSMGLLISRRKHFYFLDM*FNQFQG
Trigger: CCCCTGGAATTGGTTGAAGCACATGTCAAGAAAGTA...GAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp GTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCAATGAGGTAGATGTTTaGTCTAGTCAGACAGTTGTT +
Preference number: 4 (lower is better)
Translates to: VISHTSLLQARLSMGLLINEVDV*SSQTVV
Trigger: AACAACTGTCTGACTAGACCAAACATCTACCTCATT...GATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp ACTAAGGACCTGACACAAGAAGTATCAAGGAGTGGAGAGACATGGGGCTTGTGCCTTCAAATCAATGTCTaGAATGAGGTAGATGTTTGG +
Preference number: 4 (lower is better)
Translates to: TKDLTQEVSRSGETWGLCLQINV*NEVDVW
Trigger: CCAAACATCTACCTCATTCCAGACATTGATTTGAAG...GCACAAGCCCCATGTCTCTCCACTCCTTGATACTTCTTGTGTCAGGTCCTTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACCTTCAAATCAATGTCTaGAATGAGGTAGATGTTTGG +
Preference number: 4 (lower is better)
Translates to: LSVHTKTLSPTPHCCRLDLQINV*NEVDVW
Trigger: CCAAACATCTACCTCATTCCAGACATTGATTTGAAG...GTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGACTTCAAATCAATGTCTaGAATGAGGTAGATGTTTGG +
Preference number: 4 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGLQINV*NEVDVW
Trigger: CCAAACATCTACCTCATTCCAGACATTGATTTGAAG...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGCATGGGTCGACTCTCTaGGTCAACTTGGTAGTTAAC +
Preference number: 4 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQHGSTL*VNLVVN
Trigger: GTTAACTACCAAGTTGACCCAGAGAGTCGACCCATG...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp TATTCAATGCAAACGAGGGACATTAAGCCACTTTCATTCATTTTCTCCCAAACTCAGCTGCTGCGGCTGTaGCAACGTTTCCTTCCGAAA +
Preference number: 4 (lower is better)
Translates to: YSMQTRDIKPLSFIFSQTQLLRL*QRFLPK
Trigger: TTTCGGAAGGAAACGTTGCCACAGCCGCAGCAGCTG...AGTTTGGGAGAAAATGAATGAAAGTGGCTTAATGTCCCTCGTTTGCATTGAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp GCTTGTTGTAAAGCTGTGCTCTTTGCTATCTATCGTGTACTAGGTACAGTGGCACTCCTCATCCTCTTGTaGGGAAGGATATGGATAAAT +
Preference number: 4 (lower is better)
Translates to: ACCKAVLFAIYRVLGTVALLILL*GRIWIN
Trigger: ATTTATCCATATCCTTCCTCACAAGAGGATGAGGAG...TGCCACTGTACCTAGTACACGATAGATAGCAAAGAGCACAGCTTTACAACAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp AGATGGAATGTGAGGTCTCAGAATGTGAGGTACAGGAGGCTGCTCATCACATGTCTCTTCATTCTTTGTTaGAATTCGTTGACGAAAGCT +
Preference number: 4 (lower is better)
Translates to: RWNVRSQNVRYRRLLITCLFILC*NSLTKA
Trigger: AGCTTTCGTCAACGAATTTCAACAAAGAATGAAGAG...ACATGTGATGAGCAGCCTCCTGTACCTCACATTCTGAGACCTCACATTCCATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp GAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCCTTTCTGGACTTCTaGCTGGCTCTTCATTCTTTG +
Preference number: 4 (lower is better)
Translates to: EESISSLSVASKAGCWVMSFLDF*LALHSL
Trigger: CAAAGAATGAAGAGCCAGTCAGAAGTCCAGAAAGGA...CATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR TCA 90 bp AGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTTTACATGTATCAGTaGGCTCTTTGTTCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: SVHTKTLSPTPHCCRLDCLYMYQ*ALCSLH
Trigger: ATGAAGAGAACAAAGAGCTCACTGATACATGTAAAG...ACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp AGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCGTCCCTTTTCTGGGATTGGTaGATCTTCAATTTCAGCATC +
Preference number: 4 (lower is better)
Translates to: SISSLSVASKAGCWVMSSLFWDW*IFNFSI
Trigger: GATGCTGAAATTGAAGATGCACCAATCCCAGAAAAG...GGACGACATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp ATCTCACGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGTCCTCCTGTTGTAACTaGTTCTTCATCCTGCTCATC +
Preference number: 4 (lower is better)
Translates to: ISRRKHFFLICSFQSRMLSSCCN*FFILLI
Trigger: GATGAGCAGGATGAAGAAGCAGTTACAACAGGAGGA...CAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCGTGAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCTCCTCCTGTTGTAACTaGTTCTTCATCCTGCTCATC +
Preference number: 4 (lower is better)
Translates to: HLSKLESNHITDLRLQTSSSCCN*FFILLI
Trigger: GATGAGCAGGATGAAGAAGCAGTTACAACAGGAGGA...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGGTTACAGACAAGCGACTTGGATCACCTTTaGTGGGATCTTCATCTTCCT +
Preference number: 4 (lower is better)
Translates to: HLSKLESNHITDLRLQTSDLDHL*WDLHLP
Trigger: AGGAAGATGAAGATCCCAGCAAAGGTGATCCAAGTC...GCTTGTCTGTAACCTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp GCTTGTTGTAAAGCTGTGCTCTTTGCTATCTATCGTGTACTAGGTACAGTGGCATACTTTCTTGACATGTaGTTCAACCAATTCCAGGGG +
Preference number: 4 (lower is better)
Translates to: ACCKAVLFAIYRVLGTVAYFLDM*FNQFQG
Trigger: CCCCTGGAATTGGTTGAAGCACATGTCAAGAAAGTA...TGCCACTGTACCTAGTACACGATAGATAGCAAAGAGCACAGCTTTACAACAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGTTCCACTTTGTTTTCTaGCTTTTCAGGCTGCTGACC +
Preference number: 4 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQFHFVF*LFRLLT
Trigger: GGTCAGCAGCCTGAAAAGGCAGAAAACAAAGTGGAA...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp CGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGGGCTTTTCTGGGATTaGTGCATCTTCAATTTCAGC +
Preference number: 4 (lower is better)
Translates to: RRKHFFLICSFQSRMLGNGLFWD*CIFNFS
Trigger: GCTGAAATTGAAGATGCACCAATCCCAGAAAAGCCC...ATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CCA 90 bp TTTTCTCCCAAACTCTCAAAGCTCCTTTACCTCATTAGAACAAAACCTAAAGAAAGGATACATGCCGTTTaGTGCTGTGAGGGGTACCCG +
Preference number: 4 (lower is better)
Translates to: FSPKLSKLLYLIRTKPKERIHAV*CCEGYP
Trigger: CGGGTACCCCTCACAGCACCAAACGGCATGTATCCT...TTCTTTAGGTTTTGTTCTAATGAGGTAAAGGAGCTTTGAGAGTTTGGGAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088716.12
CDS-3UTR TCA 90 bp TCACCAGGAAATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTCTCTTCATTCTTTGTTaGAATTCGTTGACGAAAGCT +
Preference number: 4 (lower is better)
Translates to: SPGNQIERIPPFPSSSHLLFILC*NSLTKA
Trigger: AGCTTTCGTCAACGAATTTCAACAAAGAATGAAGAG...AAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATTTCCTGGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp AAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCGTCCTGGTTAAATATTCTTaGGGGTTTAGACGGTATGTG +
Preference number: 4 (lower is better)
Translates to: KHFFLICSFQSRMLGNVVLVKYS*GFRRYV
Trigger: CACATACCGTCTAAACCCTCAAGAATATTTAACCAG...GACGACATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp AATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTGGTGCACTTATTGGTAGGAGCATCTaGATGAACATACTTCTTGTA +
Preference number: 4 (lower is better)
Translates to: NQIERIPPFPSSSHLGALIGRSI*MNILLV
Trigger: TACAAGAAGTATGTTCATGCAGATGCTCCTACCAAT...AAGTGCACCAAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp CTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCATTTCCGAAGACCAAAGTTCTaGAAATCAATTGGTTTTTCC +
Preference number: 4 (lower is better)
Translates to: LLQARLSMGLLISRRKHFRRPKF*KSIGFS
Trigger: GGAAAAACCAATTGATTTGCAGAACTTTGGTCTTCG...GAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR GCA 90 bp AATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTGGTGCACTTCGAAGACCAAAGTTCTaGAAATCAATTGGTTTTTCC +
Preference number: 4 (lower is better)
Translates to: NQIERIPPFPSSSHLGALRRPKF*KSIGFS
Trigger: GGAAAAACCAATTGATTTGCAGAACTTTGGTCTTCG...AAGTGCACCAAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp ATAAGCAGAAATAAGGTCACTTATAATGCCTTAAGGTGTGTCCCTCTGTGGCTACTTCCAGGGCTTTTCTaGGATTGGTGCATCTTCAAT +
Preference number: 4 (lower is better)
Translates to: ISRNKVTYNALRCVPLWLLPGLF*DWCIFN
Trigger: ATTGAAGATGCACCAATCCCAGAAAAGCCCTGGAAG...TAGCCACAGAGGGACACACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp ATAAGCAGAAATAAGGTCACTTATAATGCCTTAAGGTGTGTCCCTCTGTGGCTATTGACGAAAGCTCACTaGCTTTCTGTTCTCATCCAC +
Preference number: 4 (lower is better)
Translates to: ISRNKVTYNALRCVPLWLLTKAH*LSVLIH
Trigger: GTGGATGAGAACAGAAAGCCAGTGAGCTTTCGTCAA...TAGCCACAGAGGGACACACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp AGGGACTCTATCAGTAGCACCACTCTAGCTCAGATAAGCAGAAATAAGGTCACTATAATCAAACCAGGATaGGTAGCTGGGAATAATGAT +
Preference number: 4 (lower is better)
Translates to: RDSISSTTLAQISRNKVTIIKPG*VAGNND
Trigger: ATCATTATTCCCAGCTACGCATCCTGGTTTGATTAT...AGTGACCTTATTTCTGCTTATCTGAGCTAGAGTGGTGCTACTGATAGAGTCCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TTTTCTCCCAAACTCTCAAAGCTCCTTTACCTCATTAGAACAAAACCTAAAGAATCAGAAAGTGGAGGATaGATTCGTCCTGAGTACGGC +
Preference number: 4 (lower is better)
Translates to: FSPKLSKLLYLIRTKPKESESGG*IRPEYG
Trigger: GCCGTACTCAGGACGAATGCATCCTCCACTTTCTGA...TTCTTTAGGTTTTGTTCTAATGAGGTAAAGGAGCTTTGAGAGTTTGGGAGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CCA 90 bp AGGGACTCTATCAGTAGCACCACTCTAGCTCAGATAAGCAGAAATAAGGTCACTAATGAGGTAGATGTTTaGTCTAGTCAGACAGTTGTT +
Preference number: 4 (lower is better)
Translates to: RDSISSTTLAQISRNKVTNEVDV*SSQTVV
Trigger: AACAACTGTCTGACTAGACCAAACATCTACCTCATT...AGTGACCTTATTTCTGCTTATCTGAGCTAGAGTGGTGCTACTGATAGAGTCCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp TTTTCTCCCAAACTCTCAAAGCTCCTTTACCTCATTAGAACAAAACCTAAAGAATCCTTTCTGGACTTCTaGCTGGCTCTTCATTCTTTG +
Preference number: 4 (lower is better)
Translates to: FSPKLSKLLYLIRTKPKESFLDF*LALHSL
Trigger: CAAAGAATGAAGAGCCAGTCAGAAGTCCAGAAAGGA...TTCTTTAGGTTTTGTTCTAATGAGGTAAAGGAGCTTTGAGAGTTTGGGAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR GCA 90 bp TTTTCTCCCAAACTCTCAAAGCTCCTTTACCTCATTAGAACAAAACCTAAAGAACGCTCAGTAAGCAACTaGTGTCTCTGTTGTTCTAGA +
Preference number: 4 (lower is better)
Translates to: FSPKLSKLLYLIRTKPKERSVSN*CLCCSR
Trigger: TCTAGAACAACAGAGACAGCAGTTGCTTACTGAGCG...TTCTTTAGGTTTTGTTCTAATGAGGTAAAGGAGCTTTGAGAGTTTGGGAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp TTTTCTCCCAAACTCTCAAAGCTCCTTTACCTCATTAGAACAAAACCTAAAGAAATGGTGGGAAGCTTTTaGCTTCTCATCAGTAAATGT +
Preference number: 4 (lower is better)
Translates to: FSPKLSKLLYLIRTKPKEMVGSF*LLISKC
Trigger: ACATTTACTGATGAGAAGTCAAAAGCTTCCCACCAT...TTCTTTAGGTTTTGTTCTAATGAGGTAAAGGAGCTTTGAGAGTTTGGGAGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR TCA 90 bp TTTTCTCCCAAACTCTCAAAGCTCCTTTACCTCATTAGAACAAAACCTAAAGAAGCGCACGCCGTTCAATaGCATGAATACAATTATAAT +
Preference number: 4 (lower is better)
Translates to: FSPKLSKLLYLIRTKPKEAHAVQ*HEYNYN
Trigger: ATTATAATTGTATTCATGTCATTGAACGGCGTGCGC...TTCTTTAGGTTTTGTTCTAATGAGGTAAAGGAGCTTTGAGAGTTTGGGAGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS GCA 90 bp CTTCCTCCGGTACACGGCCAGCCCGGAGGCCGCCGCCGCACCCCCTaGACCCACGGCGCCTGCTGCTGCTCCCGGACCGCCACCCGCTGT +
Preference number: 5 (lower is better)
Translates to: LPPVHGQPGGRRRTP*THGACCCSRTATRC
Trigger: ACAGCGGGTGGCGGTCCGGGAGCAGCAGCAGGCGCCGTGGGTGCAGGGGGTGCGGCGGCGGCCTCCGGGCTGGCCGTGTACCGGAGGAAG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS GCA 90 bp GCACCGAATCTAGCTGGGACACCGTGTCCGGGCTCTCCCAAAACTTaGTGGCCGGGCCCCCGTCCTTCCTCCGGTACACGGCCAGCCCGG +
Preference number: 5 (lower is better)
Translates to: APNLAGTPCPGSPKT*WPGPRPSSGTRPAR
Trigger: CCGGGCTGGCCGTGTACCGGAGGAAGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCCCGGACACGGTGTCCCAGCTAGATTCGGTGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CCA 90 bp CCGAATCTAGCTGGGACACCGTGTCCGGGCTCTCCCAAAACTTGCTaGCCGGGCCCCCGTCCTTCCTCCGGTACACGGCCAGCCCGGAGG +
Preference number: 5 (lower is better)
Translates to: PNLAGTPCPGSPKTC*PGPRPSSGTRPARR
Trigger: CCTCCGGGCTGGCCGTGTACCGGAGGAAGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCCCGGACACGGTGTCCCAGCTAGATTCGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CCA 90 bp TGGAGGGACCCCATCTGCAGGAGGAGGCGGCTGCTGCTGCTGTGGTaGAGGAGGATACATGCCGTTTGGTGCTGTGAGGGGTACCCGGGG +
Preference number: 5 (lower is better)
Translates to: WRDPICRRRRLLLLW*RRIHAVWCCEGYPG
Trigger: CCCCGGGTACCCCTCACAGCACCAAACGGCATGTATCCTCCTCCACCACAGCAGCAGCAGCCGCCTCCTCCTGCAGATGGGGTCCCTCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088716.12
CDS TCA 90 bp GGCATTGGAGGCATACCAGGAGGGGTAGGGCCACTCCCAGTAGGGTaGATGTTGGCTGCCACAGCGGGGATCATGCGACCTGGCATGGGC +
Preference number: 5 (lower is better)
Translates to: GIGGIPGGVGPLPVG*MLAATAGIMRPGMG
Trigger: GCCCATGCCAGGTCGCATGATCCCCGCTGTGGCAGCCAACATTCACCCTACTGGGAGTGGCCCTACCCCTCCTGGTATGCCTCCAATGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000198211.2
ENSMUST00000199896.2
CDS GCA 90 bp CATACCAGGAGGGGTAGGGCCACTCCCAGTAGGGTGAATGTTGGCTaGCACAGCGGGGATCATGCGACCTGGCATGGGCTGGCCAGGCAT +
Preference number: 5 (lower is better)
Translates to: HTRRGRATPSRVNVG*HSGDHATWHGLARH
Trigger: ATGCCTGGCCAGCCCATGCCAGGTCGCATGATCCCCGCTGTGGCAGCCAACATTCACCCTACTGGGAGTGGCCCTACCCCTCCTGGTATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp AAGGCTCATGGACTTGCTGCTGGTCTTGCAGATGACCCAGGTTTGCTCATAACCGGGCTCTCCCAAAACTaGCTGGCCGGGCCCCCGTCC +
Preference number: 5 (lower is better)
Translates to: KAHGLAAGLADDPGLLITGLSQN*LAGPPS
Trigger: GGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCCC...GGTTATGAGCAAACCTGGGTCATCTGCAAGACCAGCAGCAAGTCCATGAGCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS GCA 90 bp CTTCAAGCTTCTCTGGCTCGTCAGGCCCTGTGCCAGCAATACAGCTaGTCTCCAAGCCATAGGTGGGGTCCACCTTCCCAGAGGCTCTTG +
Preference number: 5 (lower is better)
Translates to: LQASLARQALCQQYS*SPSHRWGPPSQRLL
Trigger: CAAGAGCCTCTGGGAAGGTGGACCCCACCTATGGCTTGGAGAGCAGCTGTATTGCTGGCACAGGGCCTGACGAGCCAGAGAAGCTTGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCTGGGAGGAGGTCCCATaGCCATGGGTCGACTCTCTG +
Preference number: 5 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCWEEVP*PWVDSL
Trigger: CAGAGAGTCGACCCATGGCAATGGGACCTCCTCCCA...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS TCA 90 bp GGATTCTCAAGGGACTCCTTTGAGGGCACATGCCGTTTGGTGCTGTaGGGGGTACCCGGGGTCCTAAGATGTTTCCGGGCATTGGAGGCA +
Preference number: 5 (lower is better)
Translates to: GFSRDSFEGTCRLVL*GVPGVLRCFRALEA
Trigger: TGCCTCCAATGCCCGGAAACATCTTAGGACCCCGGGTACCCCTCACAGCACCAAACGGCATGTGCCCTCAAAGGAGTCCCTTGAGAATCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp TCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGGCTCTCCCAAAACTaGCTGGCCGGGCCCCCGTCC +
Preference number: 5 (lower is better)
Translates to: SHQNVISHTSLLQARLSMGLSQN*LAGPPS
Trigger: GGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCCC...CATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp CCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTTCAGGTCAACTGAGCGACTaGGATCACCTTTGCTGGGAT +
Preference number: 5 (lower is better)
Translates to: PASSALFWPSQALHTRGSGQLSD*DHLCWD
Trigger: ATCCCAGCAAAGGTGATCCAAGTCGCTCAGTTGACC...TGAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS TCA 90 bp TTTTCTTTCTTCAACAGCCGCCAGGTGCTTGGCTTTAGTAGCAGCTaGGGCCAGAGCAGCTGCTGCGGCTGTGGCAACGTTTCCTTCCGA +
Preference number: 5 (lower is better)
Translates to: FSFFNSRQVLGFSSS*GQSSCCGCGNVSFR
Trigger: TCGGAAGGAAACGTTGCCACAGCCGCAGCAGCTGCTCTGGCCTCAGCTGCTACTAAAGCCAAGCACCTGGCGGCTGTTGAAGAAAGAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp CAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTTCACATACACTGCACCAGCACCTGCTaGTCTCTCCTCATCACTGGT +
Preference number: 5 (lower is better)
Translates to: QVRSSGLHRHCTHVVHIHCTSTC*SLLITG
Trigger: ACCAGTGATGAGGAGAGACAAGCAGGTGCTGGTGCA...GTGTATGTGAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CAA 90 bp TCCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTTCTTCCTCTTCCTAGAGTaGGCAGAGGCTTTTCTGTCT +
Preference number: 5 (lower is better)
Translates to: SSLKCALLAFTGTAHTWFFLFLE*AEAFLS
Trigger: AGACAGAAAAGCCTCTGCCAACTCTAGGAAGAGGAA...GAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CAA 90 bp GAATGGCGGGAGAAGGTAGGAAGGGCTTGTTGTAAAGCTGTGCTCTTTGCTATCTGGGAGGAGGTCCCATaGCCATGGGTCGACTCTCTG +
Preference number: 5 (lower is better)
Translates to: EWREKVGRACCKAVLFAIWEEVP*PWVDSL
Trigger: CAGAGAGTCGACCCATGGCAATGGGACCTCCTCCCA...GATAGCAAAGAGCACAGCTTTACAACAAGCCCTTCCTACCTTCTCCCGCCATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACTCCTTTTCTTCTGGCTaGACATCCTCACTGACGTCA +
Preference number: 5 (lower is better)
Translates to: REGGREGGREERSWQNQNSFSSG*TSSLTS
Trigger: TGACGTCAGTGAGGATGTCAAGCCAGAAGAAAAGGA...GTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp GGGAGAAGGCAAGTGCTGGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGATGGTATTTGACCTGGTaGGGGAGGATGGGGTGGCGG +
Preference number: 5 (lower is better)
Translates to: GRRQVLESIYFGREWREGWYLTW*GRMGWR
Trigger: CCGCCACCCCATCCTCCCCAACCAGGTCAAATACCA...TCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp CAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTTCACATACACCGACTTGGATCACCTTaGCTGGGATCTTCATCTTCC +
Preference number: 5 (lower is better)
Translates to: QVRSSGLHRHCTHVVHIHRLGSP*LGSSSS
Trigger: GGAAGATGAAGATCCCAGCAAAGGTGATCCAAGTCG...GTGTATGTGAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CAA 90 bp ACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGTGGGAGGAGGTCCCATaGCCATGGGTCGACTCTCTG +
Preference number: 5 (lower is better)
Translates to: TSLLQARLSMGLLISRRKWEEVP*PWVDSL
Trigger: CAGAGAGTCGACCCATGGCAATGGGACCTCCTCCCA...CTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCCATTCCTTTTCTTCTGGCTaGACATCCTCACTGACGTCA +
Preference number: 5 (lower is better)
Translates to: REGGREGGRKEAGKTKTHSFSSG*TSSLTS
Trigger: TGACGTCAGTGAGGATGTCAAGCCAGAAGAAAAGGA...ATGGGTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp AGATGGAATGTGAGGTCTCAGAATGTGAGGTACAGGAGGCTGCTCATCACATGTTGGTATTTGACCTGGTaGGGGAGGATGGGGTGGCGG +
Preference number: 5 (lower is better)
Translates to: RWNVRSQNVRYRRLLITCWYLTW*GRMGWR
Trigger: CCGCCACCCCATCCTCCCCAACCAGGTCAAATACCA...ACATGTGATGAGCAGCCTCCTGTACCTCACATTCTGAGACCTCACATTCCATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp GGGAGAAGGCAAGTGCTGGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGATGCACCAGCACCTGCTaGTCTCTCCTCATCACTGGT +
Preference number: 5 (lower is better)
Translates to: GRRQVLESIYFGREWREGCTSTC*SLLITG
Trigger: ACCAGTGATGAGGAGAGACAAGCAGGTGCTGGTGCA...TCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACCCTCCAACGCTGCTTTaGCTGCAGCAGATGCTACAC +
Preference number: 5 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHPPTLL*LQQMLH
Trigger: GTGTAGCATCTGCTGCAGCAAAAGCAGCGTTGGAGG...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp TATTCAATGCAAACGAGGGACATTAAGCCACTTTCATTCATTTTCTCCCAAACTGGGCTCTCCCAAAACTaGCTGGCCGGGCCCCCGTCC +
Preference number: 5 (lower is better)
Translates to: YSMQTRDIKPLSFIFSQTGLSQN*LAGPPS
Trigger: GGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCCC...AGTTTGGGAGAAAATGAATGAAAGTGGCTTAATGTCCCTCGTTTGCATTGAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCGGTCTAGTCAGACAGTaGTTCTGTACCAATGTTTTC +
Preference number: 5 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCGLVRQ*FCTNVF
Trigger: GAAAACATTGGTACAGAACAACTGTCTGACTAGACC...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp CTCATAACCTTCTACAGCTCCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCAGGGCTTTTCTGGGATaGGTGCATCTTCAATTTCAG +
Preference number: 5 (lower is better)
Translates to: LITFYSSSLKCALLAFTGRAFLG*VHLQFQ
Trigger: CTGAAATTGAAGATGCACCAATCCCAGAAAAGCCCT...GCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGGAGCTGTAGAAGGTTATGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CAA 90 bp CCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCACTGCACACACGTGGTTCACTGGCTCTTCATTCTTaGTTGAAATTCGTTGACGAA +
Preference number: 5 (lower is better)
Translates to: PASSALFWPSQALHTRGSLALHS*LKFVDE
Trigger: TTCGTCAACGAATTTCAACAAAGAATGAAGAGCCAG...TGAACCACGTGTGTGCAGTGCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CAA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCGCTTCCTGTACTTTCTaGACATGTGCTTCAACCAAT +
Preference number: 5 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCASCTF*TCASTN
Trigger: ATTGGTTGAAGCACATGTCAAGAAAGTACAGGAAGC...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp GGGAGAAGGCAAGTGCTGGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGACCTTCCCAGAGGCTCTaGCAGCTTCCTGTACTTTCT +
Preference number: 5 (lower is better)
Translates to: GRRQVLESIYFGREWREGPSQRL*QLPVLS
Trigger: AGAAAGTACAGGAAGCTGCAAGAGCCTCTGGGAAGG...TCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS CCA 90 bp TTCAGCATCAACATCATTACTGTGGACCCAAGTGTCATAGCTGTCTaGGTAGAAACCCCAGTGCACCAGCACCTGCTTGTCTCTCCTCAT +
Preference number: 5 (lower is better)
Translates to: FSINIITVDPSVIAV*VETPVHQHLLVSPH
Trigger: ATGAGGAGAGACAAGCAGGTGCTGGTGCACTGGGGTTTCTACCCAGACAGCTATGACACTTGGGTCCACAGTAATGATGTTGATGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp TTTTCTCCCAAACTCTCAAAGCTCCTTTACCTCATTAGAACAAAACCTAAAGAAGGGCTCTCCCAAAACTaGCTGGCCGGGCCCCCGTCC +
Preference number: 5 (lower is better)
Translates to: FSPKLSKLLYLIRTKPKEGLSQN*LAGPPS
Trigger: GGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCCC...TTCTTTAGGTTTTGTTCTAATGAGGTAAAGGAGCTTTGAGAGTTTGGGAGAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp CTCATAACCTTCTACAGCTCCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCGGTCTAGTCAGACAGTaGTTCTGTACCAATGTTTTC +
Preference number: 5 (lower is better)
Translates to: LITFYSSSLKCALLAFTGGLVRQ*FCTNVF
Trigger: GAAAACATTGGTACAGAACAACTGTCTGACTAGACC...GCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGGAGCTGTAGAAGGTTATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CAA 90 bp AGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGAAGCTGGCAAAACCAAAACCCATGCTCTTCATTCTTTGTaGAAATTCGTTGACGAAAGC +
Preference number: 5 (lower is better)
Translates to: REGGREGGRKEAGKTKTHALHSL*KFVDES
Trigger: GCTTTCGTCAACGAATTTCAACAAAGAATGAAGAGC...ATGGGTTTTGGTTTTGCCAGCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp ACAGACAAGCAGAGTCCTATACCTCCCCTAGGACTCCGGGGAGAAGGCAAGTGCCTGGCTCTTCATTCTTaGTTGAAATTCGTTGACGAA +
Preference number: 5 (lower is better)
Translates to: TDKQSPIPPLGLRGEGKCLALHS*LKFVDE
Trigger: TTCGTCAACGAATTTCAACAAAGAATGAAGAGCCAG...GCACTTGCCTTCTCCCCGGAGTCCTAGGGGAGGTATAGGACTCTGCTTGTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACCGACTTGGATCACCTTaGCTGGGATCTTCATCTTCC +
Preference number: 5 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHRLGSP*LGSSSS
Trigger: GGAAGATGAAGATCCCAGCAAAGGTGATCCAAGTCG...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp TTTTTGGTGGCAATTCCTCTGGGATGGCACTTAAACCTTACAGCCTCGCACTCTGGTCAACTGAGCGACTaGGATCACCTTTGCTGGGAT +
Preference number: 5 (lower is better)
Translates to: FLVAIPLGWHLNLTASHSGQLSD*DHLCWD
Trigger: ATCCCAGCAAAGGTGATCCAAGTCGCTCAGTTGACC...AGAGTGCGAGGCTGTAAGGTTTAAGTGCCATCCCAGAGGAATTGCCACCAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp CGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATTGGTATTTGACCTGGTaGGGGAGGATGGGGTGGCGG +
Preference number: 5 (lower is better)
Translates to: RRKHFFLICSFQSRMLGNWYLTW*GRMGWR
Trigger: CCGCCACCCCATCCTCCCCAACCAGGTCAAATACCA...ATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS TCA 90 bp GATGTGATTGGTCTGTTCTGTCACGTTGTCTTCACCTGGGTCAACTaGGCGACTTGGATCACCTTTGCTGGGATCTTCATCTTCCTTTCC +
Preference number: 5 (lower is better)
Translates to: DVIGLFCHVVFTWVN*ATWITFAGIFIFLS
Trigger: GGAAAGGAAGATGAAGATCCCAGCAAAGGTGATCCAAGTCGCTCAGTTGACCCAGGTGAAGACAACGTGACAGAACAGACCAATCACATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS GCA 90 bp CACCTTCCCAGAGGCTCTTGCAGCTTCCTGTACTTTCTTGACATGTaGTTCAACCAATTCCAGGGGTACTTCTTCTCGGACACGAGAAAA +
Preference number: 5 (lower is better)
Translates to: HLPRGSCSFLYFLDM*FNQFQGYFFSDTRK
Trigger: TTTTCTCGTGTCCGAGAAGAAGTACCCCTGGAATTGGTTGAAGCACATGTCAAGAAAGTACAGGAAGCTGCAAGAGCCTCTGGGAAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp TCACGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTTGCACCAGCACCTGCTaGTCTCTCCTCATCACTGGT +
Preference number: 5 (lower is better)
Translates to: SRRKHFFLICSFQSRMLGCTSTC*SLLITG
Trigger: ACCAGTGATGAGGAGAGACAAGCAGGTGCTGGTGCA...ACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp CTCATAACCTTCTACAGCTCCAGCCTCAAGTGCGCTCTTCTGGCCTTCACAGGCGCTCTTCATTCTTTGTaGAAATTCGTTGACGAAAGC +
Preference number: 5 (lower is better)
Translates to: LITFYSSSLKCALLAFTGALHSL*KFVDES
Trigger: GCTTTCGTCAACGAATTTCAACAAAGAATGAAGAGC...GCCTGTGAAGGCCAGAAGAGCGCACTTGAGGCTGGAGCTGTAGAAGGTTATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197480.5
CDS-3UTR CAA 90 bp CCTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGATTCCTCTTCCTAGAGTaGGCAGAGGCTTTTCTGTCT +
Preference number: 5 (lower is better)
Translates to: PECSHQNVISHTSLLQARFLFLE*AEAFLS
Trigger: AGACAGAAAAGCCTCTGCCAACTCTAGGAAGAGGAA...TCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp GGGAGAAGGCAAGTGCTGGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGATTCCTCTTCCTAGAGTaGGCAGAGGCTTTTCTGTCT +
Preference number: 5 (lower is better)
Translates to: GRRQVLESIYFGREWREGFLFLE*AEAFLS
Trigger: AGACAGAAAAGCCTCTGCCAACTCTAGGAAGAGGAA...TCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS TCA 90 bp CGGGCACGTAGTTCAGCATATTTCAACTGTTCCATGTGGAAGTTCTaGCGCTCAGTAAGCAACTGCTGTCTCTGTTGTTCTAGAGCCTCT +
Preference number: 5 (lower is better)
Translates to: RARSSAYFNCSMWKF*RSVSNCCLCCSRAS
Trigger: AGAGGCTCTAGAACAACAGAGACAGCAGTTGCTTACTGAGCGTCAGAACTTCCACATGGAACAGTTGAAATATGCTGAACTACGTGCCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS GCA 90 bp TTGGTGACATGCTTCCCAAAGGCATCTTCTTGGAACTGTAGAAGCTaGACCACCAGTCCAGCTAGTGTTTTATTGGTAGGAGCATCTGCA +
Preference number: 5 (lower is better)
Translates to: LVTCFPKASSWNCRS*TTSPASVLLVGASA
Trigger: TGCAGATGCTCCTACCAATAAAACACTAGCTGGACTGGTGGTGCAGCTTCTACAGTTCCAAGAAGATGCCTTTGGGAAGCATGTCACCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp AATCAAATCGAAAGGATACCCCCTTTCCCCAGCTCTTCTCATCTTGGTGCACTTTTGGTGAAAGCTGGGTaGGTGACATGCTTCCCAAAG +
Preference number: 5 (lower is better)
Translates to: NQIERIPPFPSSSHLGALLVKAG*VTCFPK
Trigger: CTTTGGGAAGCATGTCACCAACCCAGCTTTCACCAA...AAGTGCACCAAGATGAGAAGAGCTGGGGAAAGGGGGTATCCTTTCGATTTGATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGTGCACCAGCACCTGCTaGTCTCTCCTCATCACTGGT +
Preference number: 5 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQCTSTC*SLLITG
Trigger: ACCAGTGATGAGGAGAGACAAGCAGGTGCTGGTGCA...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGAAGGGCTTTTCTGGGATaGGTGCATCTTCAATTTCAG +
Preference number: 5 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGRAFLG*VHLQFQ
Trigger: CTGAAATTGAAGATGCACCAATCCCAGAAAAGCCCT...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp GCTTGTTGTAAAGCTGTGCTCTTTGCTATCTATCGTGTACTAGGTACAGTGGCAGGTCAACTGAGCGACTaGGATCACCTTTGCTGGGAT +
Preference number: 5 (lower is better)
Translates to: ACCKAVLFAIYRVLGTVAGQLSD*DHLCWD
Trigger: ATCCCAGCAAAGGTGATCCAAGTCGCTCAGTTGACC...TGCCACTGTACCTAGTACACGATAGATAGCAAAGAGCACAGCTTTACAACAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp TCCAGGCACAGGGAAGTCCTTCATGGTCCTCACCAGGAAATCAAATCGAAAGGATTATTCCAATCGTCCTaGTACATCTCCAGAGCCTCT +
Preference number: 5 (lower is better)
Translates to: SRHREVLHGPHQEIKSKGLFQSS*YISRAS
Trigger: AGAGGCTCTGGAGATGTACAAGGACGATTGGAATAA...TCCTTTCGATTTGATTTCCTGGTGAGGACCATGAAGGACTTCCCTGTGCCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp GAATGGCGGGAGAAGGTAGGAAGGGCTTGTTGTAAAGCTGTGCTCTTTGCTATCTTATTCCAATCGTCCTaGTACATCTCCAGAGCCTCT +
Preference number: 5 (lower is better)
Translates to: EWREKVGRACCKAVLFAILFQSS*YISRAS
Trigger: AGAGGCTCTGGAGATGTACAAGGACGATTGGAATAA...GATAGCAAAGAGCACAGCTTTACAACAAGCCCTTCCTACCTTCTCCCGCCATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGCCTCCAACGCTGCTTTaGCTGCAGCAGATGCTACAC +
Preference number: 5 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQPPTLL*LQQMLH
Trigger: GTGTAGCATCTGCTGCAGCAAAAGCAGCGTTGGAGG...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp CGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATCCTCCAACGCTGCTTTaGCTGCAGCAGATGCTACAC +
Preference number: 5 (lower is better)
Translates to: RRKHFFLICSFQSRMLGNPPTLL*LQQMLH
Trigger: GTGTAGCATCTGCTGCAGCAAAAGCAGCGTTGGAGG...ATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp AGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTTCCTTTTCTTCTGGCTaGACATCCTCACTGACGTCA +
Preference number: 5 (lower is better)
Translates to: SVHTKTLSPTPHCCRLDCSFSSG*TSSLTS
Trigger: TGACGTCAGTGAGGATGTCAAGCCAGAAGAAAAGGA...ACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS GCA 90 bp ATGAAACATTTTGCAGGTAGTTTGGTGAAAGCTGGGTTGGTGACATaGTTCCCAAAGGCATCTTCTTGGAACTGTAGAAGCTGCACCACC +
Preference number: 5 (lower is better)
Translates to: MKHFAGSLVKAGLVT*FPKASSWNCRSCTT
Trigger: GGTGGTGCAGCTTCTACAGTTCCAAGAAGATGCCTTTGGGAAGCATGTCACCAACCCAGCTTTCACCAAACTACCTGCAAAATGTTTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS GCA 90 bp TCATCACAGCACACACATCTCCAGTCAGGTTTCGCCGGCAAGCAGTaGTGGTTAAATATTCTTGAGGGTTTAGACGGTATGTGTCAATCA +
Preference number: 5 (lower is better)
Translates to: SSQHTHLQSGFAGKQ*WLNILEGLDGMCQS
Trigger: TGATTGACACATACCGTCTAAACCCTCAAGAATATTTAACCAGCACTGCTTGCCGGCGAAACCTGACTGGAGATGTGTGTGCTGTGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CCA 90 bp TGCCACCGTGCCTCCTTTAACGGGTGTGTTTTCACTGTCCTTCTTTaGGTTTACATTCTTAGGGAGAACCACTTCCTCTATGTTAGGTAC +
Preference number: 5 (lower is better)
Translates to: CHRASFNGCVFTVLL*VYILRENHFLYVRY
Trigger: GTACCTAACATAGAGGAAGTGGTTCTCCCTAAGAATGTAAACCCAAAGAAGGACAGTGAAAACACACCCGTTAAAGGAGGCACGGTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp GTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTCTATGGGCTTGCTAATCGGTCTAGTCAGACAGTaGTTCTGTACCAATGTTTTC +
Preference number: 5 (lower is better)
Translates to: VISHTSLLQARLSMGLLIGLVRQ*FCTNVF
Trigger: GAAAACATTGGTACAGAACAACTGTCTGACTAGACC...GATTAGCAAGCCCATAGACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp GAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGGGTCAACTGAGCGACTaGGATCACCTTTGCTGGGAT +
Preference number: 5 (lower is better)
Translates to: EESISSLSVASKAGCWVMGQLSD*DHLCWD
Trigger: ATCCCAGCAAAGGTGATCCAAGTCGCTCAGTTGACC...CATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp AGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTTTATTCCAATCGTCCTaGTACATCTCCAGAGCCTCT +
Preference number: 5 (lower is better)
Translates to: SVHTKTLSPTPHCCRLDCLFQSS*YISRAS
Trigger: AGAGGCTCTGGAGATGTACAAGGACGATTGGAATAA...ACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp GGGAGAAGGCAAGTGCTGGAGTCAATTTACTTTGGGAGAGAATGGAGGGAAGGAGCTTCCTGTACTTTCTaGACATGTGCTTCAACCAAT +
Preference number: 5 (lower is better)
Translates to: GRRQVLESIYFGREWREGASCTF*TCASTN
Trigger: ATTGGTTGAAGCACATGTCAAGAAAGTACAGGAAGC...TCCTTCCCTCCATTCTCTCCCAAAGTAAATTGACTCCAGCACTTGCCTTCTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp GAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGCCTTCCCAGAGGCTCTaGCAGCTTCCTGTACTTTCT +
Preference number: 5 (lower is better)
Translates to: EESISSLSVASKAGCWVMPSQRL*QLPVLS
Trigger: AGAAAGTACAGGAAGCTGCAAGAGCCTCTGGGAAGG...CATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp ACGCTGCCCTTGGGAAAACAACCACCATGTTCCAATCCTGCAAATCTTCTGCACCTGGCTCTTCATTCTTaGTTGAAATTCGTTGACGAA +
Preference number: 5 (lower is better)
Translates to: TLPLGKQPPCSNPANLLHLALHS*LKFVDE
Trigger: TTCGTCAACGAATTTCAACAAAGAATGAAGAGCCAG...GTGCAGAAGATTTGCAGGATTGGAACATGGTGGTTGTTTTCCCAAGGGCAGCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp CTGAGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACCTGGCTCTTCATTCTTaGTTGAAATTCGTTGACGAA +
Preference number: 5 (lower is better)
Translates to: LSVHTKTLSPTPHCCRLDLALHS*LKFVDE
Trigger: TTCGTCAACGAATTTCAACAAAGAATGAAGAGCCAG...GTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp ATCTCACGAAGAAAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGCGACTTGGATCACCTTaGCTGGGATCTTCATCTTCC +
Preference number: 5 (lower is better)
Translates to: ISRRKHFFLICSFQSRMLRLGSP*LGSSSS
Trigger: GGAAGATGAAGATCCCAGCAAAGGTGATCCAAGTCG...CAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTTTCTTCGTGAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp AGTGTTCACACCAAAACGTTATCTCCCACACCTCACTGTTGCAGGCTAGACTGTGCTTCCTGTACTTTCTaGACATGTGCTTCAACCAAT +
Preference number: 5 (lower is better)
Translates to: SVHTKTLSPTPHCCRLDCASCTF*TCASTN
Trigger: ATTGGTTGAAGCACATGTCAAGAAAGTACAGGAAGC...ACAGTCTAGCCTGCAACAGTGAGGTGTGGGAGATAACGTTTTGGTGTGAACACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp ATAAGCAGAAATAAGGTCACTTATAATGCCTTAAGGTGTGTCCCTCTGTGGCTACCTTCCCAGAGGCTCTaGCAGCTTCCTGTACTTTCT +
Preference number: 5 (lower is better)
Translates to: ISRNKVTYNALRCVPLWLPSQRL*QLPVLS
Trigger: AGAAAGTACAGGAAGCTGCAAGAGCCTCTGGGAAGG...TAGCCACAGAGGGACACACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp AAGCATTTCTTCCTTATCTGTAGCTTCCAAAGCAGGATGCTGGGTAATGTCGTCAGGGCTTTTCTGGGATaGGTGCATCTTCAATTTCAG +
Preference number: 5 (lower is better)
Translates to: KHFFLICSFQSRMLGNVVRAFLG*VHLQFQ
Trigger: CTGAAATTGAAGATGCACCAATCCCAGAAAAGCCCT...GACGACATTACCCAGCATCCTGCTTTGGAAGCTACAGATAAGGAAGAAATGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS-3UTR CAA 90 bp CTATTCCCACTTGCATCTCTCAAAACTGGAAAGCAATCACATTACAGACCTCAGTTCCTCTTCCTAGAGTaGGCAGAGGCTTTTCTGTCT +
Preference number: 5 (lower is better)
Translates to: LFPLASLKTGKQSHYRPQFLFLE*AEAFLS
Trigger: AGACAGAAAAGCCTCTGCCAACTCTAGGAAGAGGAA...CTGAGGTCTGTAATGTGATTGCTTTCCAGTTTTGAGAGATGCAAGTGGGAATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp CAGGCTAGACTGTCTATGGGCTTGCTAATCTCACGAAGAAAGCATTTCTTCCTTGCTCTTCATTCTTTGTaGAAATTCGTTGACGAAAGC +
Preference number: 5 (lower is better)
Translates to: QARLSMGLLISRRKHFFLALHSL*KFVDES
Trigger: GCTTTCGTCAACGAATTTCAACAAAGAATGAAGAGC...AAGGAAGAAATGCTTTCTTCGTGAGATTAGCAAGCCCATAGACAGTCTAGCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197984.5
CDS CCA 90 bp TTTCTCAATGTTCATGAACATTTCAACGTTACGATCCATTCGGGATaGGTTCTGAAGATCAAATCTCCGCCAGCCCTGTTCATTTTTGTA +
Preference number: 5 (lower is better)
Translates to: FLNVHEHFNVTIHSG*VLKIKSPPALFIFV
Trigger: TACAAAAATGAACAGGGCTGGCGGAGATTTGATCTTCAGAACCCATCCCGAATGGATCGTAACGTTGAAATGTTCATGAACATTGAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp ATAAGCAGAAATAAGGTCACTTATAATGCCTTAAGGTGTGTCCCTCTGTGGCTAGGTCTAGTCAGACAGTaGTTCTGTACCAATGTTTTC +
Preference number: 5 (lower is better)
Translates to: ISRNKVTYNALRCVPLWLGLVRQ*FCTNVF
Trigger: GAAAACATTGGTACAGAACAACTGTCTGACTAGACC...TAGCCACAGAGGGACACACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp TTTTCTCCCAAACTCTCAAAGCTCCTTTACCTCATTAGAACAAAACCTAAAGAACGACTTGGATCACCTTaGCTGGGATCTTCATCTTCC +
Preference number: 5 (lower is better)
Translates to: FSPKLSKLLYLIRTKPKERLGSP*LGSSSS
Trigger: GGAAGATGAAGATCCCAGCAAAGGTGATCCAAGTCG...TTCTTTAGGTTTTGTTCTAATGAGGTAAAGGAGCTTTGAGAGTTTGGGAGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp TATTCAATGCAAACGAGGGACATTAAGCCACTTTCATTCATTTTCTCCCAAACTAGGGCTTTTCTGGGATaGGTGCATCTTCAATTTCAG +
Preference number: 5 (lower is better)
Translates to: YSMQTRDIKPLSFIFSQTRAFLG*VHLQFQ
Trigger: CTGAAATTGAAGATGCACCAATCCCAGAAAAGCCCT...AGTTTGGGAGAAAATGAATGAAAGTGGCTTAATGTCCCTCGTTTGCATTGAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS-3UTR CAA 90 bp ATAAGCAGAAATAAGGTCACTTATAATGCCTTAAGGTGTGTCCCTCTGTGGCTAGCTCTTCATTCTTTGTaGAAATTCGTTGACGAAAGC +
Preference number: 5 (lower is better)
Translates to: ISRNKVTYNALRCVPLWLALHSL*KFVDES
Trigger: GCTTTCGTCAACGAATTTCAACAAAGAATGAAGAGC...TAGCCACAGAGGGACACACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088716.12
ENSMUST00000199896.2
CDS CCA 90 bp CTTGTTAGCCAACTTCAAATCAATGTCTGGAATGAGGTAGATGTTTaGTCTAGTCAGACAGTTGTTCTGTACCAATGTTTTCTCAATGTT +
Preference number: 5 (lower is better)
Translates to: LVSQLQINVWNEVDV*SSQTVVLYQCFLNV
Trigger: AACATTGAGAAAACATTGGTACAGAACAACTGTCTGACTAGACCAAACATCTACCTCATTCCAGACATTGATTTGAAGTTGGCTAACAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CAA 90 bp CGCACCGAATCTAGCTGGGACACCGTGTCCGGGCTCTCCCAAAACTaGCTGGCCGGGCCCCCGTCCTTCCTCCGGTACACGGCCAGCCCG +
Preference number: 6 (lower is better)
Translates to: RTESSWDTVSGLSQN*LAGPPSFLRYTASP
Trigger: CGGGCTGGCCGTGTACCGGAGGAAGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCCCGGACACGGTGTCCCAGCTAGATTCGGTGCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CCA 72 bp GCTGGGACACCGTGTCCGGGCTCTCCCAAAACTTGCTaGCCGGGCCCCCGTCCTTCCTCCGGTACACGGCCA +
Preference number: 6 (lower is better)
Translates to: AGTPCPGSPKTC*PGPRPSSGTRP
Trigger: TGGCCGTGTACCGGAGGAAGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCCCGGACACGGTGTCCCAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS GCA 72 bp CTAGCTGGGACACCGTGTCCGGGCTCTCCCAAAACTTaGTGGCCGGGCCCCCGTCCTTCCTCCGGTACACGG +
Preference number: 6 (lower is better)
Translates to: LAGTPCPGSPKT*WPGPRPSSGTR
Trigger: CCGTGTACCGGAGGAAGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCCCGGACACGGTGTCCCAGCTAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CAA 72 bp TCTAGCTGGGACACCGTGTCCGGGCTCTCCCAAAACTaGCTGGCCGGGCCCCCGTCCTTCCTCCGGTACACG +
Preference number: 6 (lower is better)
Translates to: SSWDTVSGLSQN*LAGPPSFLRYT
Trigger: CGTGTACCGGAGGAAGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCCCGGACACGGTGTCCCAGCTAGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CCA 72 bp GGGAGGATGGGGTGGCGGCATCTGATGGTGCATCAGTaGGTAGGGAGGGGGCTGCTGATGCGGCATCATGCC +
Preference number: 6 (lower is better)
Translates to: GRMGWRHLMVHQ*VGRGLLMRHHA
Trigger: GGCATGATGCCGCATCAGCAGCCCCCTCCCTACCCACTGATGCACCATCAGATGCCGCCACCCCATCCTCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS GCA 72 bp AGGGGTAGGGCCACTCCCAGTAGGGTGAATGTTGGCTaGCACAGCGGGGATCATGCGACCTGGCATGGGCTG +
Preference number: 6 (lower is better)
Translates to: RGRATPSRVNVG*HSGDHATWHGL
Trigger: CAGCCCATGCCAGGTCGCATGATCCCCGCTGTGGCAGCCAACATTCACCCTACTGGGAGTGGCCCTACCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000198211.2
ENSMUST00000199896.2
CDS TCA 72 bp GGCATACCAGGAGGGGTAGGGCCACTCCCAGTAGGGTaGATGTTGGCTGCCACAGCGGGGATCATGCGACCT +
Preference number: 6 (lower is better)
Translates to: GIPGGVGPLPVG*MLAATAGIMRP
Trigger: AGGTCGCATGATCCCCGCTGTGGCAGCCAACATTCACCCTACTGGGAGTGGCCCTACCCCTCCTGGTATGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000198211.2
ENSMUST00000199896.2
CDS CCA 72 bp AGGGCCTGGTATTTGACCTGGTTGGGGAGGATGGGGTaGCGGCATCTGATGGTGCATCAGTGGGTAGGGAGG +
Preference number: 6 (lower is better)
Translates to: RAWYLTWLGRMG*RHLMVHQWVGR
Trigger: CCTCCCTACCCACTGATGCACCATCAGATGCCGCCACCCCATCCTCCCCAACCAGGTCAAATACCAGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS TCA 72 bp GCTGTGGTGGAGGAGGATACATGCCGTTTGGTGCTGTaGGGGGTACCCGGGGTCCTAAGATGTTTCCGGGCA +
Preference number: 6 (lower is better)
Translates to: AVVEEDTCRLVL*GVPGVLRCFRA
Trigger: TGCCCGGAAACATCTTAGGACCCCGGGTACCCCTCACAGCACCAAACGGCATGTATCCTCCTCCACCACAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088716.12
CDS TCA 72 bp AGGGACTCCTTTGAGGGCACATGCCGTTTGGTGCTGTaGGGGGTACCCGGGGTCCTAAGATGTTTCCGGGCA +
Preference number: 6 (lower is better)
Translates to: RDSFEGTCRLVL*GVPGVLRCFRA
Trigger: TGCCCGGAAACATCTTAGGACCCCGGGTACCCCTCACAGCACCAAACGGCATGTGCCCTCAAAGGAGTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS CAA 90 bp CCACTCCTGATCCATGGACTCCACATGGATTCTCAAGGGACTCCTTaGAGGGCACATGCCGTTTGGTGCTGTGAGGGGTACCCGGGGTCC +
Preference number: 6 (lower is better)
Translates to: PLLIHGLHMDSQGTP*RAHAVWCCEGYPGS
Trigger: GGACCCCGGGTACCCCTCACAGCACCAAACGGCATGTGCCCTCAAAGGAGTCCCTTGAGAATCCATGTGGAGTCCATGGATCAGGAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS GCA 72 bp CAGATCCTTCAAGCTTCTCTGGCTCGTCAGGCCCTGTaGCAGCAATACAGCTGCTCTCCAAGCCATAGGTGG +
Preference number: 6 (lower is better)
Translates to: QILQASLARQAL*QQYSCSPSHRW
Trigger: CCACCTATGGCTTGGAGAGCAGCTGTATTGCTGGCACAGGGCCTGACGAGCCAGAGAAGCTTGAAGGATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS TCA 72 bp TCCATGGACTCCACATGGATTCTCAAGGGACTCCTTTaGGGGCACATGCCGTTTGGTGCTGTGAGGGGTACC +
Preference number: 6 (lower is better)
Translates to: SMDSTWILKGLL*GHMPFGAVRGT
Trigger: GGTACCCCTCACAGCACCAAACGGCATGTGCCCTCAAAGGAGTCCCTTGAGAATCCATGTGGAGTCCATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS CAA 72 bp CTTCTCGGACACGAGAAAACTCCTCCAACGCTGCTTTaGCTGCAGCAGATGCTACACGGGGGTCAACGACAG +
Preference number: 6 (lower is better)
Translates to: LLGHEKTPPTLL*LQQMLHGGQRQ
Trigger: CTGTCGTTGACCCCCGTGTAGCATCTGCTGCAGCAAAAGCAGCGTTGGAGGAGTTTTCTCGTGTCCGAGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CAA 72 bp ATCCATGGACTCCACATGGATTCTCAAGGGACTCCTTaGAGGGCACATGCCGTTTGGTGCTGTGAGGGGTAC +
Preference number: 6 (lower is better)
Translates to: IHGLHMDSQGTP*RAHAVWCCEGY
Trigger: GTACCCCTCACAGCACCAAACGGCATGTGCCCTCAAAGGAGTCCCTTGAGAATCCATGTGGAGTCCATGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199896.2
CDS TCA 72 bp GGTCTGTTCTGTCACGTTGTCTTCACCTGGGTCAACTaGGCGACTTGGATCACCTTTGCTGGGATCTTCATC +
Preference number: 6 (lower is better)
Translates to: GLFCHVVFTWVN*ATWITFAGIFI
Trigger: GATGAAGATCCCAGCAAAGGTGATCCAAGTCGCTCAGTTGACCCAGGTGAAGACAACGTGACAGAACAGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CCA 72 bp AACATCATTACTGTGGACCCAAGTGTCATAGCTGTCTaGGTAGAAACCCCAGTGCACCAGCACCTGCTTGTC +
Preference number: 6 (lower is better)
Translates to: NIITVDPSVIAV*VETPVHQHLLV
Trigger: GACAAGCAGGTGCTGGTGCACTGGGGTTTCTACCCAGACAGCTATGACACTTGGGTCCACAGTAATGATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CAA 90 bp TGGTCTGTTCTGTCACGTTGTCTTCACCTGGGTCAACTGAGCGACTaGGATCACCTTTGCTGGGATCTTCATCTTCCTTTCCTCCTGTTG +
Preference number: 6 (lower is better)
Translates to: WSVLSRCLHLGQLSD*DHLCWDLHLPFLLL
Trigger: CAACAGGAGGAAAGGAAGATGAAGATCCCAGCAAAGGTGATCCAAGTCGCTCAGTTGACCCAGGTGAAGACAACGTGACAGAACAGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CAA 72 bp CTGTCACGTTGTCTTCACCTGGGTCAACTGAGCGACTaGGATCACCTTTGCTGGGATCTTCATCTTCCTTTC +
Preference number: 6 (lower is better)
Translates to: LSRCLHLGQLSD*DHLCWDLHLPF
Trigger: GAAAGGAAGATGAAGATCCCAGCAAAGGTGATCCAAGTCGCTCAGTTGACCCAGGTGAAGACAACGTGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS TCA 72 bp CCTTCCCAGAGGCTCTTGCAGCTTCCTGTACTTTCTTaGCATGTGCTTCAACCAATTCCAGGGGTACTTCTT +
Preference number: 6 (lower is better)
Translates to: PSQRLLQLPVLS*HVLQPIPGVLL
Trigger: AAGAAGTACCCCTGGAATTGGTTGAAGCACATGTCAAGAAAGTACAGGAAGCTGCAAGAGCCTCTGGGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS GCA 72 bp CACACACATCTCCAGTCAGGTTTCGCCGGCAAGCAGTaGTGGTTAAATATTCTTGAGGGTTTAGACGGTATG +
Preference number: 6 (lower is better)
Translates to: HTHLQSGFAGKQ*WLNILEGLDGM
Trigger: CATACCGTCTAAACCCTCAAGAATATTTAACCAGCACTGCTTGCCGGCGAAACCTGACTGGAGATGTGTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS GCA 72 bp AGAGGCTCTTGCAGCTTCCTGTACTTTCTTGACATGTaGTTCAACCAATTCCAGGGGTACTTCTTCTCGGAC +
Preference number: 6 (lower is better)
Translates to: RGSCSFLYFLDM*FNQFQGYFFSD
Trigger: GTCCGAGAAGAAGTACCCCTGGAATTGGTTGAAGCACATGTCAAGAAAGTACAGGAAGCTGCAAGAGCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS TCA 72 bp CCTCATCACTGGTCTCAGCCACTCCTCATCCTCTTGTaGGGAAGGATATGGATAAATATGGTGGGAAGCTTT +
Preference number: 6 (lower is better)
Translates to: PHHWSQPLLILL*GRIWINMVGSF
Trigger: AAAGCTTCCCACCATATTTATCCATATCCTTCCTCACAAGAGGATGAGGAGTGGCTGAGACCAGTGATGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS TCA 72 bp ATGGGAAGCCTCAGAAAGTGGAGGATGCATTCGTCCTaGGTACGGCTTCCAACATGTTCTGACACTTTATTC +
Preference number: 6 (lower is better)
Translates to: MGSLRKWRMHSS*VRLPTCSDTLF
Trigger: GAATAAAGTGTCAGAACATGTTGGAAGCCGTACTCAGGACGAATGCATCCTCCACTTTCTGAGGCTTCCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS GCA 72 bp TTTGCAGGTAGTTTGGTGAAAGCTGGGTTGGTGACATaGTTCCCAAAGGCATCTTCTTGGAACTGTAGAAGC +
Preference number: 6 (lower is better)
Translates to: FAGSLVKAGLVT*FPKASSWNCRS
Trigger: GCTTCTACAGTTCCAAGAAGATGCCTTTGGGAAGCATGTCACCAACCCAGCTTTCACCAAACTACCTGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CCA 72 bp GTTCATGAACATTTCAACGTTACGATCCATTCGGGATaGGTTCTGAAGATCAAATCTCCGCCAGCCCTGTTC +
Preference number: 6 (lower is better)
Translates to: VHEHFNVTIHSG*VLKIKSPPALF
Trigger: GAACAGGGCTGGCGGAGATTTGATCTTCAGAACCCATCCCGAATGGATCGTAACGTTGAAATGTTCATGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CCA 72 bp ACACATCTCCAGTCAGGTTTCGCCGGCAAGCAGTGCTaGTTAAATATTCTTGAGGGTTTAGACGGTATGTGT +
Preference number: 6 (lower is better)
Translates to: THLQSGFAGKQC*LNILEGLDGMC
Trigger: ACACATACCGTCTAAACCCTCAAGAATATTTAACCAGCACTGCTTGCCGGCGAAACCTGACTGGAGATGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CAA 72 bp CTTCCAACATGTTCTGACACTTTATTCCAATCGTCCTaGTACATCTCCAGAGCCTCTAGGAGAAGAAGGGTC +
Preference number: 6 (lower is better)
Translates to: LPTCSDTLFQSS*YISRASRRRRV
Trigger: GACCCTTCTTCTCCTAGAGGCTCTGGAGATGTACAAGGACGATTGGAATAAAGTGTCAGAACATGTTGGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS TCA 72 bp AACATTTCAACGTTACGATCCATTCGGGATGGGTTCTaGAGATCAAATCTCCGCCAGCCCTGTTCATTTTTG +
Preference number: 6 (lower is better)
Translates to: NISTLRSIRDGF*RSNLRQPCSFL
Trigger: CAAAAATGAACAGGGCTGGCGGAGATTTGATCTTCAGAACCCATCCCGAATGGATCGTAACGTTGAAATGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CAA 72 bp ATGAAACATTTTGCAGGTAGTTTGGTGAAAGCTGGGTaGGTGACATGCTTCCCAAAGGCATCTTCTTGGAAC +
Preference number: 6 (lower is better)
Translates to: MKHFAGSLVKAG*VTCFPKASSWN
Trigger: GTTCCAAGAAGATGCCTTTGGGAAGCATGTCACCAACCCAGCTTTCACCAAACTACCTGCAAAATGTTTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CAA 90 bp TTGAAATCCATGAAACATTTTGCAGGTAGTTTGGTGAAAGCTGGGTaGGTGACATGCTTCCCAAAGGCATCTTCTTGGAACTGTAGAAGC +
Preference number: 6 (lower is better)
Translates to: LKSMKHFAGSLVKAG*VTCFPKASSWNCRS
Trigger: GCTTCTACAGTTCCAAGAAGATGCCTTTGGGAAGCATGTCACCAACCCAGCTTTCACCAAACTACCTGCAAAATGTTTCATGGATTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS TCA 72 bp CCTTTCTGGACTTCTGACTGGCTCTTCATTCTTTGTTaGAATTCGTTGACGAAAGCTCACTGGCTTTCTGTT +
Preference number: 6 (lower is better)
Translates to: PFWTSDWLFILC*NSLTKAHWLSV
Trigger: AACAGAAAGCCAGTGAGCTTTCGTCAACGAATTTCAACAAAGAATGAAGAGCCAGTCAGAAGTCCAGAAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS GCA 72 bp TTTTACATGAACCTTCCAGGGCTTTTCTGGGATTGGTaGATCTTCAATTTCAGCATCAACATCATTACTGTG +
Preference number: 6 (lower is better)
Translates to: FYMNLPGLFWDW*IFNFSINIITV
Trigger: CACAGTAATGATGTTGATGCTGAAATTGAAGATGCACCAATCCCAGAAAAGCCCTGGAAGGTTCATGTAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CCA 72 bp CCATTTTACATGAACCTTCCAGGGCTTTTCTGGGATTaGTGCATCTTCAATTTCAGCATCAACATCATTACT +
Preference number: 6 (lower is better)
Translates to: PFYMNLPGLFWD*CIFNFSINIIT
Trigger: AGTAATGATGTTGATGCTGAAATTGAAGATGCACCAATCCCAGAAAAGCCCTGGAAGGTTCATGTAAAATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CAA 72 bp TCCATTTTACATGAACCTTCCAGGGCTTTTCTGGGATaGGTGCATCTTCAATTTCAGCATCAACATCATTAC +
Preference number: 6 (lower is better)
Translates to: SILHEPSRAFLG*VHLQFQHQHHY
Trigger: GTAATGATGTTGATGCTGAAATTGAAGATGCACCAATCCCAGAAAAGCCCTGGAAGGTTCATGTAAAATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CCA 72 bp CAACTTCAAATCAATGTCTGGAATGAGGTAGATGTTTaGTCTAGTCAGACAGTTGTTCTGTACCAATGTTTT +
Preference number: 6 (lower is better)
Translates to: QLQINVWNEVDV*SSQTVVLYQCF
Trigger: AAAACATTGGTACAGAACAACTGTCTGACTAGACCAAACATCTACCTCATTCCAGACATTGATTTGAAGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088716.12
ENSMUST00000197480.5
ENSMUST00000197984.5
ENSMUST00000199896.2
CDS CAA 90 bp TCTTGGAGTAAATGTCAGTTCGAAGACCAAAGTTCTGCAAATCAATaGGTTTTTCCTTGTTCTTCTCAGGAAAATTTAACATCTGTTGAG +
Preference number: 6 (lower is better)
Translates to: SWSKCQFEDQSSANQ*VFPCSSQENLTSVE
Trigger: CTCAACAGATGTTAAATTTTCCTGAGAAGAACAAGGAAAAACCAATTGATTTGCAGAACTTTGGTCTTCGAACTGACATTTACTCCAAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088716.12
ENSMUST00000197984.5
ENSMUST00000199896.2