Pregenerated sensors for SMARCA5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031715Ensembl transcript IDs: ENSMUST00000043359.9
Found 111 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGTGTTGTATGTACTGGCTTACACCTGGGATCACAGCTAGGATGCTaGAACAGAAGGATCACTTGCTCAAGACCAGCCTATAAGTACTGG | + |
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Preference number: 1 (lower is better) Translates to: GVVCTGLHLGSQLGC*NRRITCSRPAYKYW Trigger: CCAGTACTTATAGGCTGGTCTTGAGCAAGTGATCCTTCTGTTTCAGCATCCTAGCTGTGATCCCAGGTGTAAGCCAGTACATACAACACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR TCA 90 bp | TGCTACACAGCCACTAAGGTTTCCATTCCCTTTAGCAAACTACTTTaGAGCATTGCTTCTCCGATTCTACTACACACATCGCCTCTGAAC | + |
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Preference number: 1 (lower is better) Translates to: CYTATKVSIPFSKLL*SIASPILLHTSPLN Trigger: GTTCAGAGGCGATGTGTGTAGTAGAATCGGAGAAGCAATGCTTCAAAGTAGTTTGCTAAAGGGAATGGAAACCTTAGTGGCTGTGTAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR GCA 90 bp | CCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTaGACAGCACCTCCCAATCTCTTTCCATCTTCCAAACCTCAATTT | + |
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Preference number: 1 (lower is better) Translates to: PGLNRYIMLNSTSFH*TAPPNLFPSSKPQF Trigger: AAATTGAGGTTTGGAAGATGGAAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR GCA 90 bp | ATAGTAGGGGTGGAGGGAGGCTTATATTATACTGATAATGATGTCTaGTGCTACACAGCCACTAAGGTTTCCATTCCCTTTAGCAAACTA | + |
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Preference number: 1 (lower is better) Translates to: IVGVEGGLYYTDNDV*CYTATKVSIPFSKL Trigger: TAGTTTGCTAAAGGGAATGGAAACCTTAGTGGCTGTGTAGCAGCAGACATCATTATCAGTATAATATAAGCCTCCCTCCACCCCTACTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR TCA 90 bp | TGCTTGTCAACCATATTAGTGATTCTTCTCATATACTGCCACTGCTaGCACCACTGGTGCCACATCCTAAAGAAACACATCTCTAATGTA | + |
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Preference number: 1 (lower is better) Translates to: CLSTILVILLIYCHC*HHWCHILKKHISNV Trigger: TACATTAGAGATGTGTTTCTTTAGGATGTGGCACCAGTGGTGTCAGCAGTGGCAGTATATGAGAAGAATCACTAATATGGTTGACAAGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR TCA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCAAGACTATCTGCATaGCACACCAGCAATCCTACA | + |
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Preference number: 2 (lower is better) Translates to: CDLLLGVWETDSRACACQPRLSA*HTSNPT Trigger: TGTAGGATTGCTGGTGTGTCATGCAGATAGTCTTGG...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR CCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATGCACATAAAGGCCTCTaGGTATTCCTGCTTCAGGGT | + |
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Preference number: 2 (lower is better) Translates to: GRLTPGPVLVNHISDSSHAHKGL*VFLLQG Trigger: ACCCTGAAGCAGGAATACCCAGAGGCCTTTATGTGC...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR CCA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAAGGAATGCTATCCAAATaGGGCTTAGAACAAAGCTCC | + |
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Preference number: 2 (lower is better) Translates to: CDLLLGVWETDSRACACQGMLSK*GLEQSS Trigger: GGAGCTTTGTTCTAAGCCCCATTTGGATAGCATTCC...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR TCA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAAGTAAGCAGATGGACCTaGTGTCTGAATGACATAACA | + |
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Preference number: 2 (lower is better) Translates to: CDLLLGVWETDSRACACQVSRWT*CLNDIT Trigger: TGTTATGTCATTCAGACATCAGGTCCATCTGCTTAC...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR CCA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAATACTGGCTGGTTACCTaGGAAATATTACAGCTCGAT | + |
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Preference number: 2 (lower is better) Translates to: CDLLLGVWETDSRACACQYWLVT*EILQLD Trigger: ATCGAGCTGTAATATTTCCCAGGTAACCAGCCAGTA...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR CCA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTTCTGACATTATCTTGTaGCTGCTGCAAGGCCATTTG | + |
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Preference number: 2 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSSDIIL*LLQGHL Trigger: CAAATGGCCTTGCAGCAGCCACAAGATAATGTCAGA...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR TCA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGATTACACAACCAAGCTaGAGGGACCAATCAAATGTT | + |
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Preference number: 2 (lower is better) Translates to: LQVSTDTSCSILLPSTAQITQPS*RDQSNV Trigger: AACATTTGATTGGTCCCTTCAGCTTGGTTGTGTAAT...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR TCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATTACAATCTTTCCAGATaGGACTCAATAGTACCACAA | + |
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Preference number: 2 (lower is better) Translates to: GRLTPGPVLVNHISDSSHYNLSR*DSIVPQ Trigger: TTGTGGTACTATTGAGTCTCATCTGGAAAGATTGTA...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR GCA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTACATTATCTTGTGGCTaGTGCAAGGCCATTTGTCAA | + |
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Preference number: 2 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFTLSCG*CKAICQ Trigger: TTGACAAATGGCCTTGCAGCAGCCACAAGATAATGT...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR CCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATTTTAACTGGGTGTATTaGAGCATGTCTGTAATCTCA | + |
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Preference number: 2 (lower is better) Translates to: GRLTPGPVLVNHISDSSHFNWVY*SMSVIS Trigger: TGAGATTACAGACATGCTCCAATACACCCAGTTAAA...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR TCA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTCATCAGTCTTTTCAGTaGCTCATGCACACACAAAAT | + |
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Preference number: 2 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFHQSFQ*LMHTQN Trigger: ATTTTGTGTGTGCATGAGTCACTGAAAAGACTGATG...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR GCA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCGATGCTACATTTATTaGATTCCCTTAGAAAAATGG | + |
|
Preference number: 2 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSRCYIY*IPLEKW Trigger: CCATTTTTCTAAGGGAATGCAATAAATGTAGCATCG...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR CCA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTATTCCCTTAGAAAAATaGAGAACTGCTTATGTACCC | + |
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Preference number: 2 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFIPLEK*RTAYVP Trigger: GGGTACATAAGCAGTTCTCCATTTTTCTAAGGGAAT...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR GCA 90 bp | ACAATACGGGCATCAGTCTTTTCAGTGACTCATGCACACACAAAATTTAAGTTTTTATCTTGTGGCTGCTaGAAGGCCATTTGTCAAAAT | + |
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Preference number: 2 (lower is better) Translates to: TIRASVFSVTHAHTKFKFLSCGC*KAICQN Trigger: ATTTTGACAAATGGCCTTGCAGCAGCCACAAGATAA...AAACTTAAATTTTGTGTGTGCATGAGTCACTGAAAAGACTGATGCCCGTATTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR CCA 72 bp | TTCTGCGTGACAACCTGTGACTTACTTTTAGGAGTGTaGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCA | + |
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Preference number: 3 (lower is better) Translates to: FCVTTCDLLLGV*ETDSRACACQP Trigger: TGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACAGGTTGTCACGCAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR TCA 72 bp | TGTACTGGCTTACACCTGGGATCACAGCTAGGATGCTaGAACAGAAGGATCACTTGCTCAAGACCAGCCTAT | + |
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Preference number: 3 (lower is better) Translates to: CTGLHLGSQLGC*NRRITCSRPAY Trigger: ATAGGCTGGTCTTGAGCAAGTGATCCTTCTGTTTCAGCATCCTAGCTGTGATCCCAGGTGTAAGCCAGTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR CAA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTACTTCTGACATTATCTaGTGGCTGCTGCAAGGCCAT | + |
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Preference number: 3 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFTSDII*WLLQGH Trigger: ATGGCCTTGCAGCAGCCACAAGATAATGTCAGAAGT...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR GCA 72 bp | GAGGGAGGCTTATATTATACTGATAATGATGTCTGCTaGTACACAGCCACTAAGGTTTCCATTCCCTTTAGC | + |
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Preference number: 3 (lower is better) Translates to: EGGLYYTDNDVC*YTATKVSIPFS Trigger: GCTAAAGGGAATGGAAACCTTAGTGGCTGTGTAGCAGCAGACATCATTATCAGTATAATATAAGCCTCCCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR-3UTR CAA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTGCTGCAAGGCCATTaGTCAAAATATTTTCCAAAT | + |
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Preference number: 3 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSLLQGH*SKYFPN Trigger: ATTTGGAAAATATTTTGACAAATGGCCTTGCAGCAG...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR TCA 72 bp | ATAAGACTGTCACAATACGGGCATCAGTCTTTTCAGTaGCTCATGCACACACAAAATTTAAGTTTCATAGAG | + |
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Preference number: 3 (lower is better) Translates to: IRLSQYGHQSFQ*LMHTQNLSFIE Trigger: CTCTATGAAACTTAAATTTTGTGTGTGCATGAGTCACTGAAAAGACTGATGCCCGTATTGTGACAGTCTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| 3UTR TCA 72 bp | TTCAAAGTACTCTATAATTTCCCAAGACTATCTGCATaGCACACCAGCAATCCTACATTTAAGACAAATAAG | + |
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Preference number: 3 (lower is better) Translates to: FKVLYNFPRLSA*HTSNPTFKTNK Trigger: CTTATTTGTCTTAAATGTAGGATTGCTGGTGTGTCATGCAGATAGTCTTGGGAAATTATAGAGTACTTTGAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR GCA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTGTTGCCGCTGCTaGTCCCGCCGGCGCCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSLCCRC*SRRRPP Trigger: CGGCGGGCGCCGGCGGGAGCAGCAGCGGCAACAAAG...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR GCA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCGGGGCCGCCTTTGTTaGCGCTGCTGCTCCCGCCGG | + |
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Preference number: 4 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSRGRLC*RCCSRR Trigger: CCGGCGGGAGCAGCAGCGGCAACAAAGGCGGCCCCG...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR CCA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTCCGCCGCCGAGGGCTTaGAAGGCGCGCTCTCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFPPPRA*KARSRE Trigger: CTCCCGAGAGCGCGCCTTCCAAGCCCTCGGCGGCGG...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR TCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATCAGCAGTTGCAAGATTaGTGCCCAGACCACCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: GRLTPGPVLVNHISDSSHQQLQD*CPDHQH Trigger: GTGCTGGTGGTCTGGGCATCAATCTTGCAACTGCTG...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR GCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATTCTTCATCCTCCTCTTaGTCCGTTCTACGGTGTCGG | + |
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Preference number: 4 (lower is better) Translates to: GRLTPGPVLVNHISDSSHSSSSS*SVLRCR Trigger: CCGACACCGTAGAACGGAGCAAGAGGAGGATGAAGA...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR TCA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTGAGCAGCAGGCTGAATaGAATGTGCGAACAGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSEQQAE*NVRTAL Trigger: CAGAGCTGTTCGCACATTTCATTCAGCCTGCTGCTC...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR TCA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAACTGCAAGGATCCCATTaGTGCCATTCTCATACAGAG | + |
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Preference number: 4 (lower is better) Translates to: CDLLLGVWETDSRACACQLQGSH*CHSHTE Trigger: CTCTGTATGAGAATGGCATCAATGGGATCCTTGCAG...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR TCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATCTAACTCCTCGTCATTaGGGGGCTCTGCTTCATCAA | + |
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Preference number: 4 (lower is better) Translates to: GRLTPGPVLVNHISDSSHLTPRH*GALLHQ Trigger: TTGATGAAGCAGAGCCCCTCAATGACGAGGAGTTAG...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR CCA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAATCTTGTCTCTCATCATaGGGTGTCTGTCCATCCAAC | + |
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Preference number: 4 (lower is better) Translates to: CDLLLGVWETDSRACACQSCLSS*GVCPSN Trigger: GTTGGATGGACAGACACCCCATGATGAGAGACAAGA...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR TCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATTTTCATCTTCAAGGGTaGGGTTGGAGTCTTCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: GRLTPGPVLVNHISDSSHFHLQG*GWSLLS Trigger: GCTCAGAAGACTCCAACCTCACCCTTGAAGATGAAA...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR TCA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAAGGACGCAAAACCATATaGAGCCTCTCAACTAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: CDLLLGVWETDSRACACQGRKTI*SLSTSF Trigger: AAAGCTAGTTGAGAGGCTTCATATGGTTTTGCGTCC...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR GCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATGACTACATCAGCAGTTaGAAGATTGATGCCCAGACC | + |
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Preference number: 4 (lower is better) Translates to: GRLTPGPVLVNHISDSSHDYISS*KIDAQT Trigger: GGTCTGGGCATCAATCTTGCAACTGCTGATGTAGTC...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR GCA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTTCGAGGTGCCTTGGGTaGTTTAGGCTCACTAACACG | + |
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Preference number: 4 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFSRCLG*FRLTNT Trigger: CGTGTTAGTGAGCCTAAAGCACCCAAGGCACCTCGA...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR CCA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGATCTGTTGTGTACGGTaGACCAGGTTCAGCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: LQVSTDTSCSILLPSTAQICCVR*TRFSSI Trigger: GATGGAGCTGAACCTGGTCCACCGTACACAACAGAT...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR TCA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACGGAGAGCTTCCCTaGAATATGCATCAACAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LQVSTDTSCSILLPSTAQHGELP*NMHQQH Trigger: ATGCTGTTGATGCATATTTCAGGGAAGCTCTCCGTG...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR TCA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAATGTGCAGCATACAAATaGGAAAACGATCCTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: CDLLLGVWETDSRACACQCAAYK*ENDPLL Trigger: AAGAAGAGGATCGTTTTCTCATTTGTATGCTGCACA...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR GCA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAACTTTTCGTTCATTTCTaGAGTCTTCTTTGCACCTCT | + |
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Preference number: 4 (lower is better) Translates to: CDLLLGVWETDSRACACQLFVHF*SLLCTS Trigger: AGAGGTGCAAAGAAGACTGCAGAAATGAACGAAAAG...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR CCA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGTCGACGAAGGAGGAATaGACGCAAAACCATATGAAG | + |
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Preference number: 4 (lower is better) Translates to: LQVSTDTSCSILLPSTAQSTKEE*TQNHMK Trigger: CTTCATATGGTTTTGCGTCCATTCCTCCTTCGTCGA...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR TCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATAGAAGAGAAATTGTTTaGAGTGTCTTTCCCAAACCC | + |
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Preference number: 4 (lower is better) Translates to: GRLTPGPVLVNHISDSSHRREIV*SVFPKP Trigger: GGGTTTGGGAAAGACACTTCAAACAATTTCTCTTCT...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR TCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATCAGCTGAGTATTCAATaGCTTCTTCTGGAGTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: GRLTPGPVLVNHISDSSHQLSIQ*LLLEFF Trigger: GAAAAACTCCAGAAGAAGTCATTGAATACTCAGCTG...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR GCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATTCGAAGCCAAGCTTGTaGAGCATACAAATGAGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: GRLTPGPVLVNHISDSSHSKPSL*SIQMRK Trigger: TTTTCTCATTTGTATGCTGCACAAGCTTGGCTTCGA...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR TCA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATTTTTTGCTTTCCAGGTaGTCCATGATCAAATACTTC | + |
|
Preference number: 4 (lower is better) Translates to: GRLTPGPVLVNHISDSSHFLLSR*SMIKYF Trigger: GAAGTATTTGATCATGGATCACCTGGAAAGCAAAAA...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR TCA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTGTAATAAAACATCCCTaGCAAATGCAGCTCTTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSVIKHP*QMQLFA Trigger: AGCAAAGAGCTGCATTTGTCAGGGATGTTTTATTAC...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR TCA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCTCTCAACTAGCTTTTaGTCCCCAAGGCAATTATTT | + |
|
Preference number: 4 (lower is better) Translates to: LQVSTDTSCSILLPSTAQLSTSF*SPRQLF Trigger: AAATAATTGCCTTGGGGATCAAAAGCTAGTTGAGAG...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR TCA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTATTTTGTTCAGGTTCTaGTCTACAAGCCTCCCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFILFRF*STSLPC Trigger: ACAAGGGAGGCTTGTAGATCAGAACCTGAACAAAAT...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR TCA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCCATGTCGAATCATTTaGAGCATTTCATCTTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: LQVSTDTSCSILLPSTAQPCRII*SISSFP Trigger: TGGGAAAGATGAAATGCTTCAAATGATTCGACATGG...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR TCA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCGTAAAGTTTCTAAGTaGACTTTCACCCATCTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LQVSTDTSCSILLPSTAQRKVSK*TFTHLG Trigger: TCCAAGATGGGTGAAAGTTCACTTAGAAACTTTACG...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR GCA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGAACATCCCTGACAAATaGAGCTCTTTGCTCTTTATC | + |
|
Preference number: 4 (lower is better) Translates to: LQVSTDTSCSILLPSTAQNIPDK*SSLLFI Trigger: GATAAAGAGCAAAGAGCTGCATTTGTCAGGGATGTT...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR GCA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGTCTTCTTTGAATTCTTaGCTCTCCCCTTTCAATCTG | + |
|
Preference number: 4 (lower is better) Translates to: LQVSTDTSCSILLPSTAQSSLNS*LSPFNL Trigger: CAGATTGAAAGGGGAGAGGCAAGAATTCAAAGAAGA...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR TCA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGTCGGTAATCTCCAACTaGAAGCAAATTCTGTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: LQVSTDTSCSILLPSTAQSVISN*KQILFF Trigger: GAAAAACAGAATTTGCTTTCAGTTGGAGATTACCGA...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR TCA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTGTTCATTGTATGCATTaGTGGAGTCTTGTCTCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFVHCMH*WSLVSH Trigger: ATGAGAGACAAGACTCCATCAATGCATACAATGAAC...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR GCA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTACAAATGCAGCTCTTTaGTCTTTATCTCCTATCAAG | + |
|
Preference number: 4 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSTNAAL*SLSPIK Trigger: CTTGATAGGAGATAAAGAGCAAAGAGCTGCATTTGT...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR GCA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTAGAGATAAGGATGATTaGAGCATTTCCTCAACTGCA | + |
|
Preference number: 4 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFRDKDD*SISSTA Trigger: TGCAGTTGAGGAAATGCTGCAATCATCCTTATCTCT...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR GCA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTCAGCATTTCCTCAACTaGATCAAAATGTTCAATAGC | + |
|
Preference number: 4 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFQHFLN*IKMFNS Trigger: GCTATTGAACATTTTGATGCAGTTGAGGAAATGCTG...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR GCA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTATTTGGTTCATTGTATaGATTGATGGAGTCTTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFIWFIV*IDGVLS Trigger: AGACAAGACTCCATCAATGCATACAATGAACCAAAT...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR GCA 90 bp | ACAATACGGGCATCAGTCTTTTCAGTGACTCATGCACACACAAAATTTAAGTTTAGCTTCCCTGAAATATaGATCAACAGCATAGTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: TIRASVFSVTHAHTKFKFSFPEI*INSIVG Trigger: GCCAACTATGCTGTTGATGCATATTTCAGGGAAGCT...AAACTTAAATTTTGTGTGTGCATGAGTCACTGAAAAGACTGATGCCCGTATTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CCA 90 bp | ACAATACGGGCATCAGTCTTTTCAGTGACTCATGCACACACAAAATTTAAGTTTAACTTTCACCCATCTTaGAGAGCTTTTCGTTCATTT | + |
|
Preference number: 4 (lower is better) Translates to: TIRASVFSVTHAHTKFKFNFHPS*RAFRSF Trigger: AAATGAACGAAAAGCTCTCCAAGATGGGTGAAAGTT...AAACTTAAATTTTGTGTGTGCATGAGTCACTGAAAAGACTGATGCCCGTATTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCCGCCGCCGAGGGCTaGGAAGGCGCGCTCTCGGGA | + |
|
Preference number: 5 (lower is better) Translates to: CDLLLGVWETDSRACACQPAAEG*EGALSG Trigger: TCCCGAGAGCGCGCCTTCCAAGCCCTCGGCGGCGGG...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCCTCGGGGCCGCCTTaGTTGCCGCTGCTGCTCCCG | + |
|
Preference number: 5 (lower is better) Translates to: CDLLLGVWETDSRACACQPSGPP*LPLLLP Trigger: CGGGAGCAGCAGCGGCAACAAAGGCGGCCCCGAGGG...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGTCGGGGCCGCCTTTGTaGCCGCTGCTGCTCCCGCCG | + |
|
Preference number: 5 (lower is better) Translates to: LQVSTDTSCSILLPSTAQSGPPL*PLLLPP Trigger: CGGCGGGAGCAGCAGCGGCAACAAAGGCGGCCCCGA...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS TCA 90 bp | GTAGGATCTGGTTCTTGGATTTCTTTTTGCTTTCCAGGTGATCCATaGTCAAATACTTCCTCCATCTCGGTGTCCGCGGGGCCCGAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: VGSGSWISFCFPGDP*SNTSSISVSAGPEP Trigger: GGGCTCGGGCCCCGCGGACACCGAGATGGAGGAAGTATTTGATCATGGATCACCTGGAAAGCAAAAAGAAATCCAAGAACCAGATCCTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCTCTTCATCCTCCTCTaGCTCCGTTCTACGGTGTCG | + |
|
Preference number: 5 (lower is better) Translates to: LQVSTDTSCSILLPSTAQLFILL*LRSTVS Trigger: CGACACCGTAGAACGGAGCAAGAGGAGGATGAAGAG...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTTCTTCAAGGGTGAGGTaGGAGTCTTCTGAGCAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSSSRVR*ESSEQQ Trigger: CTGCTGCTCAGAAGACTCCAACCTCACCCTTGAAGA...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGTCAGCAGTTGCAAGATaGATGCCCAGACCACCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: LQVSTDTSCSILLPSTAQSAVAR*MPRPPA Trigger: TGCTGGTGGTCTGGGCATCAATCTTGCAACTGCTGA...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGGAACATTTGGTTGTTTaGGAGGTCGAGGTGCCTTGG | + |
|
Preference number: 5 (lower is better) Translates to: LQVSTDTSCSILLPSTAQEHLVV*EVEVPW Trigger: CCAAGGCACCTCGACCTCCAAAACAACCAAATGTTC...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS TCA 90 bp | TTCATATGTAGGATCTGGTTCTTGGATTTCTTTTTGCTTTCCAGGTaGTCCATGATCAAATACTTCCTCCATCTCGGTGTCCGCGGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: FICRIWFLDFFLLSR*SMIKYFLHLGVRGA Trigger: GGCCCCGCGGACACCGAGATGGAGGAAGTATTTGATCATGGATCACCTGGAAAGCAAAAAGAAATCCAAGAACCAGATCCTACATATGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATTCTGCAAGGATCCCATaGATGCCATTCTCATACAGA | + |
|
Preference number: 5 (lower is better) Translates to: GRLTPGPVLVNHISDSSHSARIP*MPFSYR Trigger: TCTGTATGAGAATGGCATCAATGGGATCCTTGCAGA...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAAAATTCACTCATCCAGTaGTGCAATGTAGACTTGGGA | + |
|
Preference number: 5 (lower is better) Translates to: CDLLLGVWETDSRACACQNSLIQ*CNVDLG Trigger: TCCCAAGTCTACATTGCACAACTGGATGAGTGAATT...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATTTCAATAGCCTCATTTaGTCCATCTTCCCTGCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: GRLTPGPVLVNHISDSSHFNSLI*SIFPAE Trigger: CTCAGCAGGGAAGATGGACAAAATGAGGCTATTGAA...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTTGCATTGATGGAGTCTaGTCTCTCATCATGGGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSCIDGV*SLIMGC Trigger: ACACCCCATGATGAGAGACAAGACTCCATCAATGCA...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATTTGTCGAAGCCAAGCTaGTGCAGCATACAAATGAGA | + |
|
Preference number: 5 (lower is better) Translates to: GRLTPGPVLVNHISDSSHLSKPS*CSIQMR Trigger: TCTCATTTGTATGCTGCACAAGCTTGGCTTCGACAA...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTCTAGATGCATATCTGTaGTGTACGGTGGACCAGGTT | + |
|
Preference number: 5 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFLDAYL*CTVDQV Trigger: AACCTGGTCCACCGTACACAACAGATATGCATCTAG...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGTCTAACACCACCATCTaGCCACTGTTGGTAACTAGA | + |
|
Preference number: 5 (lower is better) Translates to: LQVSTDTSCSILLPSTAQSNTTI*PLLVTR Trigger: TCTAGTTACCAACAGTGGCAAGATGGTGGTGTTAGA...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAAACCATGTCGAATCATTaGAAGCATTTCATCTTTCCC | + |
|
Preference number: 5 (lower is better) Translates to: CDLLLGVWETDSRACACQTMSNH*KHFIFP Trigger: GGGAAAGATGAAATGCTTCAAATGATTCGACATGGT...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAATCTGTGTGGAAGGTTTaGGTCCTCTTTTCTTTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: CDLLLGVWETDSRACACQSVWKV*VLFSFS Trigger: AGAAAAAGAAAAGAGGACCAAAACCTTCCACACAGA...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TGTGACTTACTTTTAGGAGTGTGGGAGACTGACTCCAGGGCCTGTGCTTGTCAAAAGAAGAGAAATTGTTaGAAGTGTCTTTCCCAAACC | + |
|
Preference number: 5 (lower is better) Translates to: CDLLLGVWETDSRACACQKKRNC*KCLSQT Trigger: GGTTTGGGAAAGACACTTCAAACAATTTCTCTTCTT...TTGACAAGCACAGGCCCTGGAGTCAGTCTCCCACACTCCTAAAAGTAAGTCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | GGGAGACTGACTCCAGGGCCTGTGCTTGTCAACCATATTAGTGATTCTTCTCATAGTATACCATTCTCTTaGCATTTTGCTAAGACCCAC | + |
|
Preference number: 5 (lower is better) Translates to: GRLTPGPVLVNHISDSSHSIPFS*HFAKTH Trigger: GTGGGTCTTAGCAAAATGCAAAGAGAATGGTATACT...ATGAGAAGAATCACTAATATGGTTGACAAGCACAGGCCCTGGAGTCAGTCTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTGAACTTTCACCCATCTaGGAGAGCTTTTCGTTCATT | + |
|
Preference number: 5 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSELSPI*ESFSFI Trigger: AATGAACGAAAAGCTCTCCAAGATGGGTGAAAGTTC...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTTCATACACATTTTCCTaGTCGAAGCCAAGCTTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFSYTFS*SKPSLC Trigger: GCACAAGCTTGGCTTCGACAAGGAAAATGTGTATGA...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTACCATCTTGCCACTGTaGGTAACTAGATGCATATCT | + |
|
Preference number: 5 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFTILPL*VTRCIS Trigger: AGATATGCATCTAGTTACCAACAGTGGCAAGATGGT...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTGGTTCATTGTATGCATaGATGGAGTCTTGTCTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFGSLYA*MESCLS Trigger: TGAGAGACAAGACTCCATCAATGCATACAATGAACC...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTGTGCTATTTGGTTCATaGTATGCATTGATGGAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSVLFGS*YALMES Trigger: AGACTCCATCAATGCATACAATGAACCAAATAGCAC...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTGACAAATGCAGCTCTTaGCTCTTTATCTCCTATCAA | + |
|
Preference number: 5 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFDKCSS*LFISYQ Trigger: TTGATAGGAGATAAAGAGCAAAGAGCTGCATTTGTC...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | CAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTAGCCGATTTGTAGTCTaGAATTCTCTCACTATTTCT | + |
|
Preference number: 5 (lower is better) Translates to: QIHHAQFYFLPLHSTSQSSRFVV*NSLTIS Trigger: AGAAATAGTGAGAGAATTCAAGACTACAAATCGGCT...AGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
||
| CDS-3UTR CAA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTCCCCAAGGCAATTATTaGTATCAAACCAGGAATCAA | + |
|
Preference number: 5 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFPQGNY*YQTRNQ Trigger: TTGATTCCTGGTTTGATACAAATAATTGCCTTGGGG...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR CAA 90 bp | CTCCAGGTCTCAACAGATACATCATGCTCAATTCTACTTCCTTCCACTGCACAGTTTCTGCAGTCTTCTTaGCACCTCTTTCTAAAATAC | + |
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Preference number: 5 (lower is better) Translates to: LQVSTDTSCSILLPSTAQFLQSS*HLFLKY Trigger: GTATTTTAGAAAGAGGTGCAAAGAAGACTGCAGAAA...CTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTATCTGTTGAGACCTGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR CAA 90 bp | TACATCATGCTCAATTCTACTTCCTTCCACTGCACAGCACCTCCCAATCTCTTTATCGCAGTTCTGGACTaGAGAAACCAATCAAATCTA | + |
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Preference number: 5 (lower is better) Translates to: YIMLNSTSFHCTAPPNLFIAVLD*RNQSNL Trigger: TAGATTTGATTGGTTTCTCAAGTCCAGAACTGCGAT...AAAGAGATTGGGAGGTGCTGTGCAGTGGAAGGAAGTAGAATTGAGCATGATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS TCA 90 bp | AAAGTTATAAACACTGGACTCTGTGTCCATCGTAAAGTTTCTAAGTaGACTTTCACCCATCTTGGAGAGCTTTTCGTTCATTTCTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: KVINTGLCVHRKVSK*TFTHLGELFVHFCS Trigger: ACTGCAGAAATGAACGAAAAGCTCTCCAAGATGGGTGAAAGTTCACTTAGAAACTTTACGATGGACACAGAGTCCAGTGTTTATAACTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS-3UTR CAA 90 bp | ACAATACGGGCATCAGTCTTTTCAGTGACTCATGCACACACAAAATTTAAGTTTGATACTTATTCTTCTTaGAATTCTTGCCTCTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: TIRASVFSVTHAHTKFKFDTYSS*NSCLSP Trigger: AGGGGAGAGGCAAGAATTCAAAGAAGAATAAGTATC...AAACTTAAATTTTGTGTGTGCATGAGTCACTGAAAAGACTGATGCCCGTATTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS TCA 72 bp | GGTTCTTGGATTTCTTTTTGCTTTCCAGGTGATCCATaGTCAAATACTTCCTCCATCTCGGTGTCCGCGGGG | + |
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Preference number: 6 (lower is better) Translates to: GSWISFCFPGDP*SNTSSISVSAG Trigger: CCCCGCGGACACCGAGATGGAGGAAGTATTTGATCATGGATCACCTGGAAAGCAAAAAGAAATCCAAGAACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS CAA 72 bp | GGGAGTAGCTTGTCTAACACCACCATCTTGCCACTGTaGGTAACTAGATGCATATCTGTTGTGTACGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: GSSLSNTTILPL*VTRCISVVYGG Trigger: TCCACCGTACACAACAGATATGCATCTAGTTACCAACAGTGGCAAGATGGTGGTGTTAGACAAGCTACTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS CAA 72 bp | ATCAGTTATAAAGCGAAACACTCGGACAGTCTTCGTTaGTCCAATTCTATGGGCACGGTCCATAGCCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: ISYKAKHSDSLR*SNSMGTVHSLK Trigger: CTTCAGGCTATGGACCGTGCCCATAGAATTGGACAAACGAAGACTGTCCGAGTGTTTCGCTTTATAACTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS CAA 90 bp | CCTTGTTCTTTCAGTTTAGGGAGTAGCTTGTCTAACACCACCATCTaGCCACTGTTGGTAACTAGATGCATATCTGTTGTGTACGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: PCSFSLGSSLSNTTI*PLLVTRCISVVYGG Trigger: TCCACCGTACACAACAGATATGCATCTAGTTACCAACAGTGGCAAGATGGTGGTGTTAGACAAGCTACTCCCTAAACTGAAAGAACAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS CAA 90 bp | CACAGTGTTATCAGTTATAAAGCGAAACACTCGGACAGTCTTCGTTaGTCCAATTCTATGGGCACGGTCCATAGCCTGAAGATCAACTTG | + |
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Preference number: 6 (lower is better) Translates to: HSVISYKAKHSDSLR*SNSMGTVHSLKINL Trigger: CAAGTTGATCTTCAGGCTATGGACCGTGCCCATAGAATTGGACAAACGAAGACTGTCCGAGTGTTTCGCTTTATAACTGATAACACTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS TCA 72 bp | AGGATCTGGTTCTTGGATTTCTTTTTGCTTTCCAGGTaGTCCATGATCAAATACTTCCTCCATCTCGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: RIWFLDFFLLSR*SMIKYFLHLGV Trigger: GACACCGAGATGGAGGAAGTATTTGATCATGGATCACCTGGAAAGCAAAAAGAAATCCAAGAACCAGATCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS CAA 72 bp | TTCAGTTTAGGGAGTAGCTTGTCTAACACCACCATCTaGCCACTGTTGGTAACTAGATGCATATCTGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: FSLGSSLSNTTI*PLLVTRCISVV Trigger: CACAACAGATATGCATCTAGTTACCAACAGTGGCAAGATGGTGGTGTTAGACAAGCTACTCCCTAAACTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS CAA 72 bp | ACTCTTGAACCTTGTTCTTTCAGTTTAGGGAGTAGCTaGTCTAACACCACCATCTTGCCACTGTTGGTAACT | + |
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Preference number: 6 (lower is better) Translates to: TLEPCSFSLGSS*SNTTILPLLVT Trigger: AGTTACCAACAGTGGCAAGATGGTGGTGTTAGACAAGCTACTCCCTAAACTGAAAGAACAAGGTTCAAGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS CAA 90 bp | GACTCTGTGTCCATCGTAAAGTTTCTAAGTGAACTTTCACCCATCTaGGAGAGCTTTTCGTTCATTTCTGCAGTCTTCTTTGCACCTCTT | + |
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Preference number: 6 (lower is better) Translates to: DSVSIVKFLSELSPI*ESFSFISAVFFAPL Trigger: AAGAGGTGCAAAGAAGACTGCAGAAATGAACGAAAAGCTCTCCAAGATGGGTGAAAGTTCACTTAGAAACTTTACGATGGACACAGAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS TCA 72 bp | AACACTGGACTCTGTGTCCATCGTAAAGTTTCTAAGTaGACTTTCACCCATCTTGGAGAGCTTTTCGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: NTGLCVHRKVSK*TFTHLGELFVH Trigger: ATGAACGAAAAGCTCTCCAAGATGGGTGAAAGTTCACTTAGAAACTTTACGATGGACACAGAGTCCAGTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS CAA 72 bp | CGGATGCATTGTCGTAATTCATCATACACATTTTCCTaGTCGAAGCCAAGCTTGTGCAGCATACAAATGAGA | + |
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Preference number: 6 (lower is better) Translates to: RMHCRNSSYTFS*SKPSLCSIQMR Trigger: TCTCATTTGTATGCTGCACAAGCTTGGCTTCGACAAGGAAAATGTGTATGATGAATTACGACAATGCATCCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS CAA 90 bp | AAGATTAGTACTCTTGAACCTTGTTCTTTCAGTTTAGGGAGTAGCTaGTCTAACACCACCATCTTGCCACTGTTGGTAACTAGATGCATA | + |
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Preference number: 6 (lower is better) Translates to: KISTLEPCSFSLGSS*SNTTILPLLVTRCI Trigger: TATGCATCTAGTTACCAACAGTGGCAAGATGGTGGTGTTAGACAAGCTACTCCCTAAACTGAAAGAACAAGGTTCAAGAGTACTAATCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS CAA 72 bp | AGAGGCGTCCCTGTTAGCAACAGCCGATTTGTAGTCTaGAATTCTCTCACTATTTCTGACAACTTAGATTTT | + |
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Preference number: 6 (lower is better) Translates to: RGVPVSNSRFVV*NSLTISDNLDF Trigger: AAAATCTAAGTTGTCAGAAATAGTGAGAGAATTCAAGACTACAAATCGGCTGTTGCTAACAGGGACGCCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS TCA 72 bp | GAAGCAAACACATGTGTAGCACCATGTCGAATCATTTaGAGCATTTCATCTTTCCCAATTTTGTTCAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: EANTCVAPCRII*SISSFPILFRF Trigger: GAACCTGAACAAAATTGGGAAAGATGAAATGCTTCAAATGATTCGACATGGTGCTACACATGTGTTTGCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS CAA 72 bp | TCCATCGTAAAGTTTCTAAGTGAACTTTCACCCATCTaGGAGAGCTTTTCGTTCATTTCTGCAGTCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: SIVKFLSELSPI*ESFSFISAVFF Trigger: AAAGAAGACTGCAGAAATGAACGAAAAGCTCTCCAAGATGGGTGAAAGTTCACTTAGAAACTTTACGATGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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| CDS TCA 72 bp | ACCATCAATATCCTCATCAGTGATTTCACTTTCTTTTaGAGCAAACACATGTGTAGCACCATGTCGAATCAT | + |
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Preference number: 6 (lower is better) Translates to: TINILISDFTFF*SKHMCSTMSNH Trigger: ATGATTCGACATGGTGCTACACATGTGTTTGCTTCAAAAGAAAGTGAAATCACTGATGAGGATATTGATGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043359.9 |
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