Pregenerated sensors for SMAP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032870Ensembl transcript IDs: ENSMUST00000043200.8
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAAAAGGTGGGCAAACAGCACTCAGACACGAGGGCACAGAGAGACTaGCAGATGGGAGAGGGAAAAGAGCAGGGACTACCGATGAGATGG | + |
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Preference number: 1 (lower is better) Translates to: EKVGKQHSDTRAQRD*QMGEGKEQGLPMRW Trigger: CCATCTCATCGGTAGTCCCTGCTCTTTTCCCTCTCCCATCTGCCAGTCTCTCTGTGCCCTCGTGTCTGAGTGCTGTTTGCCCACCTTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR CCA 90 bp | GAGAGAAAGCTGTCCAGGCTCTCTGCCTCTTACACCTGGAAAAGGTaGGCAAACAGCACTCAGACACGAGGGCACAGAGAGACTGGCAGA | + |
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Preference number: 1 (lower is better) Translates to: ERKLSRLSASYTWKR*ANSTQTRGHRETGR Trigger: TCTGCCAGTCTCTCTGTGCCCTCGTGTCTGAGTGCTGTTTGCCCACCTTTTCCAGGTGTAAGAGGCAGAGAGCCTGGACAGCTTTCTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR CCA 90 bp | ATCCGGCTCAAAGTAGGCAGAAGGTGCGCAAGGGGTATGTTTGTGTaGGGGACGACCTTCATGGAGTCTTTGGTGCTAATGAAGGCTGAC | + |
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Preference number: 1 (lower is better) Translates to: IRLKVGRRCARGMFV*GTTFMESLVLMKAD Trigger: GTCAGCCTTCATTAGCACCAAAGACTCCATGAAGGTCGTCCCCCACACAAACATACCCCTTGCGCACCTTCTGCCTACTTTGAGCCGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR-3UTR CCA 90 bp | TGTCCAGGCTCTCTGCCTCTTACACCTGGAAAAGGTGGGCAAACAGCACTCAGATACACCCAGAGCAGATaGGGAGGCGGCAGGTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: CPGSLPLTPGKGGQTALRYTQSR*GGGRWD Trigger: ATCCCACCTGCCGCCTCCCCATCTGCTCTGGGTGTA...TCTGAGTGCTGTTTGCCCACCTTTTCCAGGTGTAAGAGGCAGAGAGCCTGGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR-3UTR TCA 90 bp | CATACACAGGAGAAAGGCAACCAGGCGCTGTGGTTCCCACACATGAGATCTTTGGGGCCAGGGCCAAACTaGCCCAAGACACAAGGATTA | + |
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Preference number: 2 (lower is better) Translates to: HTQEKGNQALWFPHMRSLGPGPN*PKTQGL Trigger: TAATCCTTGTGTCTTGGGTCAGTTTGGCCCTGGCCC...CAAAGATCTCATGTGTGGGAACCACAGCGCCTGGTTGCCTTTCTCCTGTGTATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR-3UTR TCA 90 bp | CTGACTGCTGAACTTCTTTCATTCCTGAAAAGCTGGGAACTTGATGGCTCGCTCCAACAGAGAGGTCCATaGCTCTGGGAAGGGAGACTG | + |
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Preference number: 2 (lower is better) Translates to: LTAELLSFLKSWELDGSLQQRGP*LWEGRL Trigger: CAGTCTCCCTTCCCAGAGTCATGGACCTCTCTGTTG...GAGCGAGCCATCAAGTTCCCAGCTTTTCAGGAATGAAAGAAGTTCAGCAGTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR-3UTR CCA 90 bp | CTGACTGCTGAACTTCTTTCATTCCTGAAAAGCTGGGAACTTGATGGCTCGCTCGGGTGGGAGGAAATCTaGACAGTCAGGGACATGACC | + |
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Preference number: 2 (lower is better) Translates to: LTAELLSFLKSWELDGSLGWEEI*TVRDMT Trigger: GGTCATGTCCCTGACTGTCCAGATTTCCTCCCACCC...GAGCGAGCCATCAAGTTCCCAGCTTTTCAGGAATGAAAGAAGTTCAGCAGTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR CAA 90 bp | AGAGTGAAGTGGAATAATATTTTTGCTCATCTTCATAGGAAGGGCTaGCCTCACTCTAGGGCCAGGGCCAAACTGACCCAAGACACAAGG | + |
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Preference number: 2 (lower is better) Translates to: RVKWNNIFAHLHRKG*PHSRARAKLTQDTR Trigger: CCTTGTGTCTTGGGTCAGTTTGGCCCTGGCCCTAGAGTGAGGCAAGCCCTTCCTATGAAGATGAGCAAAAATATTATTCCACTTCACTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR-3UTR GCA 90 bp | AGACACAAGGATTATCTGACTGCTGAACTTCTTTCATTCCTGAAAAGCTGGGAAACCTTTCTGTGGGTCTaGGAGGAAGCTCAGCCTCAA | + |
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Preference number: 2 (lower is better) Translates to: RHKDYLTAELLSFLKSWETFLWV*EEAQPQ Trigger: TTGAGGCTGAGCTTCCTCGCAGACCCACAGAAAGGT...TTCCCAGCTTTTCAGGAATGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR-3UTR GCA 90 bp | CAGGGCCAAACTGACCCAAGACACAAGGATTATCTGACTGCTGAACTTCTTTCATTCTACTTTCCCCTCTaGCAAGCACTTGTCCTTTAT | + |
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Preference number: 2 (lower is better) Translates to: QGQTDPRHKDYLTAELLSFYFPL*QALVLY Trigger: ATAAAGGACAAGTGCTTGGCAGAGGGGAAAGTAGAA...TGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCTTGGGTCAGTTTGGCCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR CCA 72 bp | GAGAGAAAGCTGTCCAGGCTCTCTGCCTCTTACACCTaGAAAAGGTGGGCAAACAGCACTCAGACACGAGGG | + |
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Preference number: 3 (lower is better) Translates to: ERKLSRLSASYT*KRWANSTQTRG Trigger: CCCTCGTGTCTGAGTGCTGTTTGCCCACCTTTTCCAGGTGTAAGAGGCAGAGAGCCTGGACAGCTTTCTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR CCA 72 bp | AAAGTAGGCAGAAGGTGCGCAAGGGGTATGTTTGTGTaGGGGACGACCTTCATGGAGTCTTTGGTGCTAATG | + |
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Preference number: 3 (lower is better) Translates to: KVGRRCARGMFV*GTTFMESLVLM Trigger: CATTAGCACCAAAGACTCCATGAAGGTCGTCCCCCACACAAACATACCCCTTGCGCACCTTCTGCCTACTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR CCA 72 bp | AGCAACAGAGAGGTCCATGACTCTGGGAAGGGAGACTaGGTTAGGCAGAATGCCAAACAACATATGACTTAT | + |
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Preference number: 3 (lower is better) Translates to: SNREVHDSGKGD*VRQNAKQHMTY Trigger: ATAAGTCATATGTTGTTTGGCATTCTGCCTAACCCAGTCTCCCTTCCCAGAGTCATGGACCTCTCTGTTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR CCA 72 bp | ATGGGAGAGGGAAAAGAGCAGGGACTACCGATGAGATaGCATGTTTTAAACTGTAAGATGACCTGGCAACAG | + |
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Preference number: 3 (lower is better) Translates to: MGEGKEQGLPMR*HVLNCKMTWQQ Trigger: CTGTTGCCAGGTCATCTTACAGTTTAAAACATGCCATCTCATCGGTAGTCCCTGCTCTTTTCCCTCTCCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR TCA 72 bp | TTCTTGTTTGAATTTTCAAGTGGGGTGAACAATGGCTaGGAGAGAAAGCTGTCCAGGCTCTCTGCCTCTTAC | + |
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Preference number: 3 (lower is better) Translates to: FLFEFSSGVNNG*ERKLSRLSASY Trigger: GTAAGAGGCAGAGAGCCTGGACAGCTTTCTCTCTCAGCCATTGTTCACCCCACTTGAAAATTCAAACAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR CCA 72 bp | TTTACACATACACAGGAGAAAGGCAACCAGGCGCTGTaGTTCCCACACATGAGATCTTTGAAGCAAAGTTTT | + |
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Preference number: 3 (lower is better) Translates to: FTHTQEKGNQAL*FPHMRSLKQSF Trigger: AAAACTTTGCTTCAAAGATCTCATGTGTGGGAACCACAGCGCCTGGTTGCCTTTCTCCTGTGTATGTGTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR TCA 90 bp | ATACACCCAGAGCAGATGGGGAGGCGGCAGGTGGGATCCACACATCCACACGCAACAGCTGGGTCTATCTaGGGTCGCCGAAAGGTCTCG | + |
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Preference number: 4 (lower is better) Translates to: IHPEQMGRRQVGSTHPHATAGSI*GRRKVS Trigger: CGAGACCTTTCGGCGACCTCAGATAGACCCAGCTGT...TGCGTGTGGATGTGTGGATCCCACCTGCCGCCTCCCCATCTGCTCTGGGTGTAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR TCA 90 bp | ATACACCCAGAGCAGATGGGGAGGCGGCAGGTGGGATCCACACATCCACACGCACACACCGAATGCAGATaGACACCCCGATGTTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: IHPEQMGRRQVGSTHPHAHTECR*TPRCSR Trigger: CCTGGAACATCGGGGTGTTCATCTGCATTCGGTGTG...TGCGTGTGGATGTGTGGATCCCACCTGCCGCCTCCCCATCTGCTCTGGGTGTAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR TCA 90 bp | AGGGAGGTACTGATCAGTGTATACACTCTCCCGCAGCTCATGTGCCCTCTTCTGCCAGAGGCTCCCGGTTaGGCTACCATGCCTACTGGC | + |
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Preference number: 4 (lower is better) Translates to: REVLISVYTLPQLMCPLLPEAPG*ATMPTG Trigger: GCCAGTAGGCATGGTAGCTCAACCGGGAGCCTCTGG...CAGAAGAGGGCACATGAGCTGCGGGAGAGTGTATACACTGATCAGTACCTCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | GGTGGGGTGGGGTGGGAGGAAATCTGGACAGTCAGGGACATGACCAACATAAAGTTGGCCAGGACCGCCTaGTACCGATCCACGTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: GGVGWEEIWTVRDMTNIKLARTA*YRSTSF Trigger: GAAGGACGTGGATCGGTACCAGGCGGTCCTGGCCAA...CTTTATGTTGGTCATGTCCCTGACTGTCCAGATTTCCTCCCACCCCACCCCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | AACAGAGAGGTCCATGACTCTGGGAAGGGAGACTGGGTTAGGCAGAATGCCAAACCTCCAGCAGCAGGTTaGCCAGGACCGCCTGGTACC | + |
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Preference number: 4 (lower is better) Translates to: NREVHDSGKGDWVRQNAKPPAAG*PGPPGT Trigger: GGTACCAGGCGGTCCTGGCCAACCTGCTGCTGGAGG...TTTGGCATTCTGCCTAACCCAGTCTCCCTTCCCAGAGTCATGGACCTCTCTGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR GCA 90 bp | ATACACCCAGAGCAGATGGGGAGGCGGCAGGTGGGATCCACACATCCACACGCAGTCCATGACAGGGGCTaGAGATTTCGGAGAGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: IHPEQMGRRQVGSTHPHAVHDRG*RFRRAF Trigger: AAAAGCTCTCCGAAATCTGCAGCCCCTGTCATGGAC...TGCGTGTGGATGTGTGGATCCCACCTGCCGCCTCCCCATCTGCTCTGGGTGTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR GCA 90 bp | AGGGAGGTACTGATCAGTGTATACACTCTCCCGCAGCTCATGTGCCCTCTTCTGTCATGGACGCCTGCATaGCCCCCATATAGCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: REVLISVYTLPQLMCPLLSWTPA*PPYSLQ Trigger: CTGCAGGCTATATGGGGGGCATGCAGGCGTCCATGA...CAGAAGAGGGCACATGAGCTGCGGGAGAGTGTATACACTGATCAGTACCTCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR GCA 90 bp | AGGGAGGTACTGATCAGTGTATACACTCTCCCGCAGCTCATGTGCCCTCTTCTGGAGAGTCTGATTGGCTaGCTGGCCATTTCCACCGCC | + |
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Preference number: 4 (lower is better) Translates to: REVLISVYTLPQLMCPLLESLIG*LAISTA Trigger: GGCGGTGGAAATGGCCAGGCAGCCAATCAGACTCTC...CAGAAGAGGGCACATGAGCTGCGGGAGAGTGTATACACTGATCAGTACCTCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR TCA 90 bp | CCTCGTAGGGGTTGGTCTTCTAGTCACAGGCCAGATCCGGCTCAAAGTAGGCAGAGCCTTTCTGGAAACTaGAGAAGGGGACGGAACAGA | + |
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Preference number: 4 (lower is better) Translates to: PRRGWSSSHRPDPAQSRQSLSGN*RRGRNR Trigger: TCTGTTCCGTCCCCTTCTTCAGTTTCCAGAAAGGCT...CTGCCTACTTTGAGCCGGATCTGGCCTGTGACTAGAAGACCAACCCCTACGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | GGTGGGGTGGGGTGGGAGGAAATCTGGACAGTCAGGGACATGACCAACATAAAGAACTGGGGTAAGCTGTaGGGTATGCCATCTGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GGVGWEEIWTVRDMTNIKNWGKL*GMPSEQ Trigger: CTGCTCAGATGGCATACCCCACAGCTTACCCCAGTT...CTTTATGTTGGTCATGTCCCTGACTGTCCAGATTTCCTCCCACCCCACCCCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR TCA 90 bp | CTGACTGAAGCAGTGAGTCTTGAAGCCCCAGATCCTGAAAGCACTCAGAGTGAAGCTTGGGCAGGCATTTaGGGCGTCTGGGATCCATAC | + |
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Preference number: 4 (lower is better) Translates to: LTEAVSLEAPDPESTQSEAWAGI*GVWDPY Trigger: GTATGGATCCCAGACGCCTCAAATGCCTGCCCAAGC...TTCACTCTGAGTGCTTTCAGGATCTGGGGCTTCAAGACTCACTGCTTCAGTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR TCA 90 bp | AGGGAGGTACTGATCAGTGTATACACTCTCCCGCAGCTCATGTGCCCTCTTCTGGTGGGGTATGCCATCTaGGCAGGAGCCATGAACATT | + |
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Preference number: 4 (lower is better) Translates to: REVLISVYTLPQLMCPLLVGYAI*AGAMNI Trigger: AATGTTCATGGCTCCTGCTCAGATGGCATACCCCAC...CAGAAGAGGGCACATGAGCTGCGGGAGAGTGTATACACTGATCAGTACCTCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR GCA 90 bp | CTGGACAGTCAGGGACATGACCAACATAAAGCAACAGAGAGGTCCATGACTCTGCATAGCTGCCATGCTTaGCATGTAGCCGGCCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: LDSQGHDQHKATERSMTLHSCHA*HVAGLL Trigger: CAGCAGGCCGGCTACATGGCAAGCATGGCAGCTATG...CAGAGTCATGGACCTCTCTGTTGCTTTATGTTGGTCATGTCCCTGACTGTCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | CAGGGCCAAACTGACCCAAGACACAAGGATTATCTGACTGCTGAACTTCTTTCAAGCTACCATGCCTACTaGCGGAGGCACCATGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: QGQTDPRHKDYLTAELLSSYHAY*RRHHAP Trigger: GGGGGCATGGTGCCTCCGCCAGTAGGCATGGTAGCT...TGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCTTGGGTCAGTTTGGCCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | TGTCCAGGCTCTCTGCCTCTTACACCTGGAAAAGGTGGGCAAACAGCACTCAGACATGATGCTGTTAGGTaGTGTAACCCCGGGGAAACT | + |
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Preference number: 4 (lower is better) Translates to: CPGSLPLTPGKGGQTALRHDAVR*CNPGET Trigger: AGTTTCCCCGGGGTTACACCACCTAACAGCATCATG...TCTGAGTGCTGTTTGCCCACCTTTTCCAGGTGTAAGAGGCAGAGAGCCTGGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR TCA 90 bp | CAGGGCCAAACTGACCCAAGACACAAGGATTATCTGACTGCTGAACTTCTTTCAGGCCCAACAAGTCCATaGCAGGGGCTGCAGATTTCG | + |
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Preference number: 4 (lower is better) Translates to: QGQTDPRHKDYLTAELLSGPTSP*QGLQIS Trigger: CGAAATCTGCAGCCCCTGTCATGGACTTGTTGGGCC...TGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCTTGGGTCAGTTTGGCCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR TCA 90 bp | CTGACTGAAGCAGTGAGTCTTGAAGCCCCAGATCCTGAAAGCACTCAGAGTGAATCCACATCTGAGGACTaGGAGTCTGATTGGCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: LTEAVSLEAPDPESTQSESTSED*ESDWLP Trigger: AGGCAGCCAATCAGACTCTCAGTCCTCAGATGTGGA...TTCACTCTGAGTGCTTTCAGGATCTGGGGCTTCAAGACTCACTGCTTCAGTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR GCA 90 bp | CATACACAGGAGAAAGGCAACCAGGCGCTGTGGTTCCCACACATGAGATCTTTGGTCCATAGTTCATCATaGCGTTGGCTCCGTAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: HTQEKGNQALWFPHMRSLVHSSS*RWLRRS Trigger: ACTTCTACGGAGCCAACGGCATGATGAACTATGGAC...CAAAGATCTCATGTGTGGGAACCACAGCGCCTGGTTGCCTTTCTCCTGTGTATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | AACAGAGAGGTCCATGACTCTGGGAAGGGAGACTGGGTTAGGCAGAATGCCAAAAACCTACAGCCTTTCTaGAAACTGAAGAAGGGGACG | + |
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Preference number: 4 (lower is better) Translates to: NREVHDSGKGDWVRQNAKNLQPF*KLKKGT Trigger: CGTCCCCTTCTTCAGTTTCCAGAAAGGCTGTAGGTT...TTTGGCATTCTGCCTAACCCAGTCTCCCTTCCCAGAGTCATGGACCTCTCTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | AACAGAGAGGTCCATGACTCTGGGAAGGGAGACTGGGTTAGGCAGAATGCCAAAATAGGATGGAGTCCTTaGAGAGCTGTTTCTTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: NREVHDSGKGDWVRQNAKIGWSP*RAVSCL Trigger: CAGGCAAGAAACAGCTCTCCAAGGACTCCATCCTAT...TTTGGCATTCTGCCTAACCCAGTCTCCCTTCCCAGAGTCATGGACCTCTCTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR GCA 90 bp | CTGACTGCTGAACTTCTTTCATTCCTGAAAAGCTGGGAACTTGATGGCTCGCTCACTCCATACACAGTCTaGGGCATAGCTGCCATGCTT | + |
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Preference number: 4 (lower is better) Translates to: LTAELLSFLKSWELDGSLTPYTV*GIAAML Trigger: AAGCATGGCAGCTATGCCGCAGACTGTGTATGGAGT...GAGCGAGCCATCAAGTTCCCAGCTTTTCAGGAATGAAAGAAGTTCAGCAGTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | CAGGGCCAAACTGACCCAAGACACAAGGATTATCTGACTGCTGAACTTCTTTCATCCCTGCAGTTGGCATaGAACCTACAGCCTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: QGQTDPRHKDYLTAELLSSLQLA*NLQPFW Trigger: CCAGAAAGGCTGTAGGTTCCATGCCAACTGCAGGGA...TGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCTTGGGTCAGTTTGGCCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | CTGGACAGTCAGGGACATGACCAACATAAAGCAACAGAGAGGTCCATGACTCTGTTGCAGTTGCTGAGCTaGCTGAACTCCATACACAGT | + |
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Preference number: 4 (lower is better) Translates to: LDSQGHDQHKATERSMTLLQLLS*LNSIHS Trigger: ACTGTGTATGGAGTTCAGCCAGCTCAGCAACTGCAA...CAGAGTCATGGACCTCTCTGTTGCTTTATGTTGGTCATGTCCCTGACTGTCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | CTGGACAGTCAGGGACATGACCAACATAAAGCAACAGAGAGGTCCATGACTCTGAGTTCATCATGCCGTTaGCTCCGTAGAAGTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: LDSQGHDQHKATERSMTLSSSCR*LRRSSS Trigger: GGATGAACTTCTACGGAGCCAACGGCATGATGAACT...CAGAGTCATGGACCTCTCTGTTGCTTTATGTTGGTCATGTCCCTGACTGTCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | CAGGGCCAAACTGACCCAAGACACAAGGATTATCTGACTGCTGAACTTCTTTCAAAATCCTTCAACAGCTaGGTCTATCTGAGGTCGCCG | + |
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Preference number: 4 (lower is better) Translates to: QGQTDPRHKDYLTAELLSKSFNS*VYLRSP Trigger: CGGCGACCTCAGATAGACCCAGCTGTTGAAGGATTT...TGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCTTGGGTCAGTTTGGCCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR GCA 90 bp | AGACACAAGGATTATCTGACTGCTGAACTTCTTTCATTCCTGAAAAGCTGGGAAAGTCTGCGGCATAGCTaGCATGCTTGCCATGTAGCC | + |
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Preference number: 4 (lower is better) Translates to: RHKDYLTAELLSFLKSWESLRHS*HACHVA Trigger: GGCTACATGGCAAGCATGGCAGCTATGCCGCAGACT...TTCCCAGCTTTTCAGGAATGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | CATACACAGGAGAAAGGCAACCAGGCGCTGTGGTTCCCACACATGAGATCTTTGTTTCTAGGGCATTGCTaGTCTTACTGTTTGCAATTG | + |
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Preference number: 4 (lower is better) Translates to: HTQEKGNQALWFPHMRSLFLGHC*SYCLQL Trigger: CAATTGCAAACAGTAAGACCAGCAATGCCCTAGAAA...CAAAGATCTCATGTGTGGGAACCACAGCGCCTGGTTGCCTTTCTCCTGTGTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| 3UTR CAA 72 bp | TGGAATAATATTTTTGCTCATCTTCATAGGAAGGGCTaGCCTCACTCTAGGGCCAGGGCCAAACTGACCCAA | + |
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Preference number: 4 (lower is better) Translates to: WNNIFAHLHRKG*PHSRARAKLTQ Trigger: TTGGGTCAGTTTGGCCCTGGCCCTAGAGTGAGGCAAGCCCTTCCTATGAAGATGAGCAAAAATATTATTCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR TCA 90 bp | CAGGGCCAAACTGACCCAAGACACAAGGATTATCTGACTGCTGAACTTCTTTCAATTTCCACCGCCCATTaGCTGTCCATAGTTCATCAT | + |
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Preference number: 4 (lower is better) Translates to: QGQTDPRHKDYLTAELLSISTAH*LSIVHH Trigger: ATGATGAACTATGGACAGTCAATGGGCGGTGGAAAT...TGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCTTGGGTCAGTTTGGCCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR GCA 90 bp | AGACACAAGGATTATCTGACTGCTGAACTTCTTTCATTCCTGAAAAGCTGGGAAAGAACCAGCACTCCCTaGAGTTGGCATGGAACCTAC | + |
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Preference number: 4 (lower is better) Translates to: RHKDYLTAELLSFLKSWERTSTP*SWHGTY Trigger: GTAGGTTCCATGCCAACTGCAGGGAGTGCTGGTTCT...TTCCCAGCTTTTCAGGAATGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | AGACACAAGGATTATCTGACTGCTGAACTTCTTTCATTCCTGAAAAGCTGGGAAAGCACTCCCTGCAGTTaGCATGGAACCTACAGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: RHKDYLTAELLSFLKSWESTPCS*HGTYSL Trigger: AAGGCTGTAGGTTCCATGCCAACTGCAGGGAGTGCT...TTCCCAGCTTTTCAGGAATGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR TCA 90 bp | AGACACAAGGATTATCTGACTGCTGAACTTCTTTCATTCCTGAAAAGCTGGGAACTTACTGTTTGCAATTaGGCAGGCCACAGGAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: RHKDYLTAELLSFLKSWELTVCN*AGHRSI Trigger: GATGCTCCTGTGGCCTGCTCAATTGCAAACAGTAAG...TTCCCAGCTTTTCAGGAATGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR GCA 90 bp | AGACACAAGGATTATCTGACTGCTGAACTTCTTTCATTCCTGAAAAGCTGGGAATTTACCCTGGATATATaGACCCCCAAATTCCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: RHKDYLTAELLSFLKSWEFTLDI*TPKFLW Trigger: CCACAGGAATTTGGGGGTGCATATATCCAGGGTAAA...TTCCCAGCTTTTCAGGAATGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CCA 90 bp | AGACACAAGGATTATCTGACTGCTGAACTTCTTTCATTCCTGAAAAGCTGGGAACATACAGTGATAGGATaGAGTCCTTGGAGAGCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: RHKDYLTAELLSFLKSWEHTVIG*SPWRAV Trigger: AACAGCTCTCCAAGGACTCCATCCTATCACTGTATG...TTCCCAGCTTTTCAGGAATGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS GCA 90 bp | AGCTGGCTGAACTCCATACACAGTCTGCGGCATAGCTGCCATGCTTaGCATGTAGCCGGCCTGCTGAGTGGTCATCATCCCGTTCGGCAC | + |
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Preference number: 5 (lower is better) Translates to: SWLNSIHSLRHSCHA*HVAGLLSGHHPVRH Trigger: GTGCCGAACGGGATGATGACCACTCAGCAGGCCGGCTACATGGCAAGCATGGCAGCTATGCCGCAGACTGTGTATGGAGTTCAGCCAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS GCA 90 bp | CAGTTGCTGAGCTGGCTGAACTCCATACACAGTCTGCGGCATAGCTaGCATGCTTGCCATGTAGCCGGCCTGCTGAGTGGTCATCATCCC | + |
|
Preference number: 5 (lower is better) Translates to: QLLSWLNSIHSLRHS*HACHVAGLLSGHHP Trigger: GGGATGATGACCACTCAGCAGGCCGGCTACATGGCAAGCATGGCAGCTATGCCGCAGACTGTGTATGGAGTTCAGCCAGCTCAGCAACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CCA 90 bp | ACTGGCAGTCAGCACAGAACTTGTTATCTTCCTCCAGCAGCAGGTTaGCCAGGACCGCCTGGTACCGATCCACGTCCTTCACCGACTTGC | + |
|
Preference number: 5 (lower is better) Translates to: TGSQHRTCYLPPAAG*PGPPGTDPRPSPTC Trigger: GCAAGTCGGTGAAGGACGTGGATCGGTACCAGGCGGTCCTGGCCAACCTGCTGCTGGAGGAAGATAACAAGTTCTGTGCTGACTGCCAGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | GGTGGGGTGGGGTGGGAGGAAATCTGGACAGTCAGGGACATGACCAACATAAAGTCCAGAGGCTCCCGGTaGAGCTACCATGCCTACTGG | + |
|
Preference number: 5 (lower is better) Translates to: GGVGWEEIWTVRDMTNIKSRGSR*SYHAYW Trigger: CCAGTAGGCATGGTAGCTCAACCGGGAGCCTCTGGA...CTTTATGTTGGTCATGTCCCTGACTGTCCAGATTTCCTCCCACCCCACCCCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS GCA 90 bp | CTGCCTGGCCATTTCCACCGCCCATTGACTGTCCATAGTTCATCATaGCGTTGGCTCCGTAGAAGTTCATCCCAGCCATTTGCTGGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: LPGHFHRPLTVHSSS*RWLRRSSSQPFAGS Trigger: TGACCCAGCAAATGGCTGGGATGAACTTCTACGGAGCCAACGGCATGATGAACTATGGACAGTCAATGGGCGGTGGAAATGGCCAGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CCA 90 bp | GGTTCAGGTTTTCAGGGACAGAACCAGCACTCCCTGCAGTTGGCATaGAACCTACAGCCTTTCTGGAAACTGAAGAAGGGGACGGAACAG | + |
|
Preference number: 5 (lower is better) Translates to: GSGFQGQNQHSLQLA*NLQPFWKLKKGTEQ Trigger: CTGTTCCGTCCCCTTCTTCAGTTTCCAGAAAGGCTGTAGGTTCCATGCCAACTGCAGGGAGTGCTGGTTCTGTCCCTGAAAACCTGAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CCA 90 bp | GGCCATTTCCACCGCCCATTGACTGTCCATAGTTCATCATGCCGTTaGCTCCGTAGAAGTTCATCCCAGCCATTTGCTGGGTCATCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: GHFHRPLTVHSSSCR*LRRSSSQPFAGSSE Trigger: CTCAGATGACCCAGCAAATGGCTGGGATGAACTTCTACGGAGCCAACGGCATGATGAACTATGGACAGTCAATGGGCGGTGGAAATGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | TGGGGTGGGGTGGGAGGAAATCTGGACAGTCAGGGACATGACCAACATAAAGCAAAGGTTCCATTGCAGTaGCTGAGCTGGCTGAACTCC | + |
|
Preference number: 5 (lower is better) Translates to: WGGVGGNLDSQGHDQHKAKVPLQ*LSWLNS Trigger: GGAGTTCAGCCAGCTCAGCAACTGCAATGGAACCTT...TGCTTTATGTTGGTCATGTCCCTGACTGTCCAGATTTCCTCCCACCCCACCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | GGTGGGGTGGGGTGGGAGGAAATCTGGACAGTCAGGGACATGACCAACATAAAGGTTCATCCCAGCCATTaGCTGGGTCATCTGAGTAAG | + |
|
Preference number: 5 (lower is better) Translates to: GGVGWEEIWTVRDMTNIKVHPSH*LGHLSK Trigger: CTTACTCAGATGACCCAGCAAATGGCTGGGATGAAC...CTTTATGTTGGTCATGTCCCTGACTGTCCAGATTTCCTCCCACCCCACCCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CCA 90 bp | CATTTGCTGGGTCATCTGAGTAAGGTTCCATTGCAGTTGCTGAGCTaGCTGAACTCCATACACAGTCTGCGGCATAGCTGCCATGCTTGC | + |
|
Preference number: 5 (lower is better) Translates to: HLLGHLSKVPLQLLS*LNSIHSLRHSCHAC Trigger: GCAAGCATGGCAGCTATGCCGCAGACTGTGTATGGAGTTCAGCCAGCTCAGCAACTGCAATGGAACCTTACTCAGATGACCCAGCAAATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | CTGGACAGTCAGGGACATGACCAACATAAAGCAACAGAGAGGTCCATGACTCTGTGCTTGGGCAGGCATTaGAGGCGTCTGGGATCCATA | + |
|
Preference number: 5 (lower is better) Translates to: LDSQGHDQHKATERSMTLCLGRH*RRLGSI Trigger: TATGGATCCCAGACGCCTCAAATGCCTGCCCAAGCA...CAGAGTCATGGACCTCTCTGTTGCTTTATGTTGGTCATGTCCCTGACTGTCCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | AACAGAGAGGTCCATGACTCTGGGAAGGGAGACTGGGTTAGGCAGAATGCCAAAAGCCATGAACATTGCTaGGGCAGGCATTTGAGGCGT | + |
|
Preference number: 5 (lower is better) Translates to: NREVHDSGKGDWVRQNAKSHEHC*GRHLRR Trigger: ACGCCTCAAATGCCTGCCCAAGCAATGTTCATGGCT...TTTGGCATTCTGCCTAACCCAGTCTCCCTTCCCAGAGTCATGGACCTCTCTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | TGGGGTGGGGTGGGAGGAAATCTGGACAGTCAGGGACATGACCAACATAAAGCATCCATTCCCCATCTCTaGCATGCACTGAATCTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: WGGVGGNLDSQGHDQHKASIPHL*HALNLF Trigger: GAACAGATTCAGTGCATGCAAGAGATGGGGAATGGA...TGCTTTATGTTGGTCATGTCCCTGACTGTCCAGATTTCCTCCCACCCCACCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | AGGGAGGTACTGATCAGTGTATACACTCTCCCGCAGCTCATGTGCCCTCTTCTGTCTTTCCTAAGGACATaGATGTCCAGACTTCGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: REVLISVYTLPQLMCPLLSFLRT*MSRLRS Trigger: GGACCGAAGTCTGGACATCAATGTCCTTAGGAAAGA...CAGAAGAGGGCACATGAGCTGCGGGAGAGTGTATACACTGATCAGTACCTCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | CTGACTGAAGCAGTGAGTCTTGAAGCCCCAGATCCTGAAAGCACTCAGAGTGAACAGTCAGCACAGAACTaGTTATCTTCCTCCAGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: LTEAVSLEAPDPESTQSEQSAQN*LSSSSS Trigger: GCTGCTGGAGGAAGATAACAAGTTCTGTGCTGACTG...TTCACTCTGAGTGCTTTCAGGATCTGGGGCTTCAAGACTCACTGCTTCAGTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | CTGACTGAAGCAGTGAGTCTTGAAGCCCCAGATCCTGAAAGCACTCAGAGTGAATGCTGGTCTTACTGTTaGCAATTGAGCAGGCCACAG | + |
|
Preference number: 5 (lower is better) Translates to: LTEAVSLEAPDPESTQSECWSYC*QLSRPQ Trigger: CTGTGGCCTGCTCAATTGCAAACAGTAAGACCAGCA...TTCACTCTGAGTGCTTTCAGGATCTGGGGCTTCAAGACTCACTGCTTCAGTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | AGGGAGGTACTGATCAGTGTATACACTCTCCCGCAGCTCATGTGCCCTCTTCTGTCCTTTTCTAGGGCATaGCTGGTCTTACTGTTTGCA | + |
|
Preference number: 5 (lower is better) Translates to: REVLISVYTLPQLMCPLLSFSRA*LVLLFA Trigger: TGCAAACAGTAAGACCAGCAATGCCCTAGAAAAGGA...CAGAAGAGGGCACATGAGCTGCGGGAGAGTGTATACACTGATCAGTACCTCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | AACAGAGAGGTCCATGACTCTGGGAAGGGAGACTGGGTTAGGCAGAATGCCAAACATTTCCACCGCCCATaGACTGTCCATAGTTCATCA | + |
|
Preference number: 5 (lower is better) Translates to: NREVHDSGKGDWVRQNAKHFHRP*TVHSSS Trigger: TGATGAACTATGGACAGTCAATGGGCGGTGGAAATG...TTTGGCATTCTGCCTAACCCAGTCTCCCTTCCCAGAGTCATGGACCTCTCTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CCA 90 bp | GAATCTGTTCTTGAGTCCACTGGTCGAGGTTCACTGATTTTACCCTaGATATATGCACCCCCAAATTCCTGTGGATCCCAGCACACCGAA | + |
|
Preference number: 5 (lower is better) Translates to: ESVLESTGRGSLILP*IYAPPNSCGSQHTE Trigger: TTCGGTGTGCTGGGATCCACAGGAATTTGGGGGTGCATATATCCAGGGTAAAATCAGTGAACCTCGACCAGTGGACTCAAGAACAGATTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | CATACACAGGAGAAAGGCAACCAGGCGCTGTGGTTCCCACACATGAGATCTTTGTTGGAGAGCTGTTTCTaGCCTGTTTCTTCTGATTTG | + |
|
Preference number: 5 (lower is better) Translates to: HTQEKGNQALWFPHMRSLLESCF*PVSSDL Trigger: CAAATCAGAAGAAACAGGCAAGAAACAGCTCTCCAA...CAAAGATCTCATGTGTGGGAACCACAGCGCCTGGTTGCCTTTCTCCTGTGTATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS-3UTR CAA 90 bp | CAGGGCCAAACTGACCCAAGACACAAGGATTATCTGACTGCTGAACTTCTTTCATCTTACTGTTTGCAATaGAGCAGGCCACAGGAGCAT | + |
|
Preference number: 5 (lower is better) Translates to: QGQTDPRHKDYLTAELLSSYCLQ*SRPQEH Trigger: ATGCTCCTGTGGCCTGCTCAATTGCAAACAGTAAGA...TGAAAGAAGTTCAGCAGTCAGATAATCCTTGTGTCTTGGGTCAGTTTGGCCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS TCA 72 bp | ATGGCCATAGGGGTTAGCATTCCAGAGGCTCCCGGTTaGGCTACCATGCCTACTGGCGGAGGCACCATGCCC | + |
|
Preference number: 6 (lower is better) Translates to: MAIGVSIPEAPG*ATMPTGGGTMP Trigger: GGGCATGGTGCCTCCGCCAGTAGGCATGGTAGCTCAACCGGGAGCCTCTGGAATGCTAACCCCTATGGCCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS GCA 72 bp | AGCTGGCTGAACTCCATACACAGTCTGCGGCATAGCTaGCATGCTTGCCATGTAGCCGGCCTGCTGAGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: SWLNSIHSLRHS*HACHVAGLLSG Trigger: ACCACTCAGCAGGCCGGCTACATGGCAAGCATGGCAGCTATGCCGCAGACTGTGTATGGAGTTCAGCCAGCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS GCA 72 bp | AACTCCATACACAGTCTGCGGCATAGCTGCCATGCTTaGCATGTAGCCGGCCTGCTGAGTGGTCATCATCCC | + |
|
Preference number: 6 (lower is better) Translates to: NSIHSLRHSCHA*HVAGLLSGHHP Trigger: GGGATGATGACCACTCAGCAGGCCGGCTACATGGCAAGCATGGCAGCTATGCCGCAGACTGTGTATGGAGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CCA 72 bp | CAGCACAGAACTTGTTATCTTCCTCCAGCAGCAGGTTaGCCAGGACCGCCTGGTACCGATCCACGTCCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: QHRTCYLPPAAG*PGPPGTDPRPS Trigger: TGAAGGACGTGGATCGGTACCAGGCGGTCCTGGCCAACCTGCTGCTGGAGGAAGATAACAAGTTCTGTGCTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CCA 72 bp | ACACCCCGATGTTCCAGGAGGCCCATCTCGGCCCTTTaGACTGGCAGTCAGCACAGAACTTGTTATCTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: TPRCSRRPISAL*TGSQHRTCYLP Trigger: AGGAAGATAACAAGTTCTGTGCTGACTGCCAGTCCAAAGGGCCGAGATGGGCCTCCTGGAACATCGGGGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CCA 72 bp | CACCGCCCATTGACTGTCCATAGTTCATCATGCCGTTaGCTCCGTAGAAGTTCATCCCAGCCATTTGCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: HRPLTVHSSSCR*LRRSSSQPFAG Trigger: CCCAGCAAATGGCTGGGATGAACTTCTACGGAGCCAACGGCATGATGAACTATGGACAGTCAATGGGCGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CCA 72 bp | TTTCAGGGACAGAACCAGCACTCCCTGCAGTTGGCATaGAACCTACAGCCTTTCTGGAAACTGAAGAAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: FQGQNQHSLQLA*NLQPFWKLKKG Trigger: CCCCTTCTTCAGTTTCCAGAAAGGCTGTAGGTTCCATGCCAACTGCAGGGAGTGCTGGTTCTGTCCCTGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CAA 90 bp | GAAATAGGTTCAGGTTTTCAGGGACAGAACCAGCACTCCCTGCAGTaGGCATGGAACCTACAGCCTTTCTGGAAACTGAAGAAGGGGACG | + |
|
Preference number: 6 (lower is better) Translates to: EIGSGFQGQNQHSLQ*AWNLQPFWKLKKGT Trigger: CGTCCCCTTCTTCAGTTTCCAGAAAGGCTGTAGGTTCCATGCCAACTGCAGGGAGTGCTGGTTCTGTCCCTGAAAACCTGAACCTATTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CAA 72 bp | CATTTGCTGGGTCATCTGAGTAAGGTTCCATTGCAGTaGCTGAGCTGGCTGAACTCCATACACAGTCTGCGG | + |
|
Preference number: 6 (lower is better) Translates to: HLLGHLSKVPLQ*LSWLNSIHSLR Trigger: CCGCAGACTGTGTATGGAGTTCAGCCAGCTCAGCAACTGCAATGGAACCTTACTCAGATGACCCAGCAAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CAA 72 bp | CATGCCGTTGGCTCCGTAGAAGTTCATCCCAGCCATTaGCTGGGTCATCTGAGTAAGGTTCCATTGCAGTTG | + |
|
Preference number: 6 (lower is better) Translates to: HAVGSVEVHPSH*LGHLSKVPLQL Trigger: CAACTGCAATGGAACCTTACTCAGATGACCCAGCAAATGGCTGGGATGAACTTCTACGGAGCCAACGGCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS GCA 72 bp | CATTTCCACCGCCCATTGACTGTCCATAGTTCATCATaGCGTTGGCTCCGTAGAAGTTCATCCCAGCCATTT | + |
|
Preference number: 6 (lower is better) Translates to: HFHRPLTVHSSS*RWLRRSSSQPF Trigger: AAATGGCTGGGATGAACTTCTACGGAGCCAACGGCATGATGAACTATGGACAGTCAATGGGCGGTGGAAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CCA 72 bp | CTTGAGTCCACTGGTCGAGGTTCACTGATTTTACCCTaGATATATGCACCCCCAAATTCCTGTGGATCCCAG | + |
|
Preference number: 6 (lower is better) Translates to: LESTGRGSLILP*IYAPPNSCGSQ Trigger: CTGGGATCCACAGGAATTTGGGGGTGCATATATCCAGGGTAAAATCAGTGAACCTCGACCAGTGGACTCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CAA 72 bp | CCTTTTCTAGGGCATTGCTGGTCTTACTGTTTGCAATaGAGCAGGCCACAGGAGCATCAAGGCCCAACAAGT | + |
|
Preference number: 6 (lower is better) Translates to: PFLGHCWSYCLQ*SRPQEHQGPTS Trigger: ACTTGTTGGGCCTTGATGCTCCTGTGGCCTGCTCAATTGCAAACAGTAAGACCAGCAATGCCCTAGAAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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| CDS CCA 72 bp | AGGCCAAAAGATCTAGATCCTTTTCTAGGGCATTGCTaGTCTTACTGTTTGCAATTGAGCAGGCCACAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: RPKDLDPFLGHC*SYCLQLSRPQE Trigger: CTCCTGTGGCCTGCTCAATTGCAAACAGTAAGACCAGCAATGCCCTAGAAAAGGATCTAGATCTTTTGGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043200.8 |
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