RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLX4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039738

Ensembl transcript IDs: ENSMUST00000040790.14, ENSMUST00000146569.8, ENSMUST00000156542.8, ENSMUST00000165830.2, ENSMUST00000171762.2

Found 576 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GACAGCAGCCGGATCTTGGGGCTGTGGCTCACAGGAAGGCTGCTCTaGGAAGCAGGTGGCCGCCGTGGACTCGGCTCTCCTTGCTTGGGC +
Preference number: 1 (lower is better)
Translates to: DSSRILGLWLTGRLL*EAGGRRGLGSPCLG
Trigger: GCCCAAGCAAGGAGAGCCGAGTCCACGGCGGCCACCTGCTTCCCAGAGCAGCCTTCCTGTGAGCCACAGCCCCAAGATCCGGCTGCTGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR GCA 90 bp CCTGTGGCGGCTGCAGAAGCTGGGGTCGTCAGTTGCCTCCCCCAATaGATCCTGGGCCTCTGCTTTCCCTGCCCAGTCTGGGCACTGGTC +
Preference number: 1 (lower is better)
Translates to: PVAAAEAGVVSCLPQ*ILGLCFPCPVWALV
Trigger: GACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCCCAGGATGCATTGGGGGAGGCAACTGACGACCCCAGCTTCTGCAGCCGCCACAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp TGGAGGACAGCAGCCGGATCTTGGGGCTGTGGCTCACAGGAAGGCTaGTCTGGGAAGCAGGTGGCCGCCGTGGACTCGGCTCTCCTTGCT +
Preference number: 1 (lower is better)
Translates to: WRTAAGSWGCGSQEG*SGKQVAAVDSALLA
Trigger: AGCAAGGAGAGCCGAGTCCACGGCGGCCACCTGCTTCCCAGAGCAGCCTTCCTGTGAGCCACAGCCCCAAGATCCGGCTGCTGTCCTCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 90 bp CACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTaGGCTGGTTTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCC +
Preference number: 1 (lower is better)
Translates to: HRVQAARRCLVCHGG*AGFNAEKAGPSCLS
Trigger: GGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp TGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTaGTTTCCCAGCTGTCCTTCCTCCCCGTGCTGTAGCCCGGCCTCT +
Preference number: 1 (lower is better)
Translates to: WLQSSQGMSLQPSAD*FPSCPSSPCCSPAS
Trigger: AGAGGCCGGGCTACAGCACGGGGAGGAAGGACAGCTGGGAAACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 90 bp AGTCCCGGGGAGTGGCAGTCATCACTGTGCAAAGCCTCCAGGACCTaGCTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGA +
Preference number: 1 (lower is better)
Translates to: SPGEWQSSLCKASRT*LLGLLVVRGPVRSR
Trigger: TCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGCACAGTGATGACTGCCACTCCCCGGGACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp TGTAGGATGCTGGTGACAGTGGCAAGTATCTGGGCAAGCACAGGGTaGAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTG +
Preference number: 1 (lower is better)
Translates to: CRMLVTVASIWASTG*RPPVGVWSAMAAGL
Trigger: CAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAGATACTTGCCACTGTCACCAGCATCCTACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp TACGCCCCGACTCCCGGGCTGTGGGCTAGAGCTCAGCCCTTCCACTaGCAAGTCCACAAGGTCCTGAAGGGCTTGACGCTCCCTCTGGCT +
Preference number: 1 (lower is better)
Translates to: YAPTPGLWARAQPFH*QVHKVLKGLTLPLA
Trigger: AGCCAGAGGGAGCGTCAAGCCCTTCAGGACCTTGTGGACTTGGCAGTGGAAGGGCTGAGCTCTAGCCCACAGCCCGGGAGTCGGGGCGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 90 bp CGGCTGCAGAAGCTGGGGTCGTCAGTTGCCTCCCCCAATGCATCCTaGGCCTCTGCTTTCCCTGCCCAGTCTGGGCACTGGTCCTGCAGT +
Preference number: 1 (lower is better)
Translates to: RLQKLGSSVASPNAS*ASAFPAQSGHWSCS
Trigger: ACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCCCAGGATGCATTGGGGGAGGCAACTGACGACCCCAGCTTCTGCAGCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp GATCTTGGGGCTGTGGCTCACAGGAAGGCTGCTCTGGGAAGCAGGTaGCCGCCGTGGACTCGGCTCTCCTTGCTTGGGCAGCTCCAATGG +
Preference number: 1 (lower is better)
Translates to: DLGAVAHRKAALGSR*PPWTRLSLLGQLQW
Trigger: CCATTGGAGCTGCCCAAGCAAGGAGAGCCGAGTCCACGGCGGCCACCTGCTTCCCAGAGCAGCCTTCCTGTGAGCCACAGCCCCAAGATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 90 bp AGGTACCAGGTCCAACCCTGTGGGTACGCCCCGACTCCCGGGCTGTaGGCTAGAGCTCAGCCCTTCCACTGCCAAGTCCACAAGGTCCTG +
Preference number: 1 (lower is better)
Translates to: RYQVQPCGYAPTPGL*ARAQPFHCQVHKVL
Trigger: CAGGACCTTGTGGACTTGGCAGTGGAAGGGCTGAGCTCTAGCCCACAGCCCGGGAGTCGGGGCGTACCCACAGGGTTGGACCTGGTACCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR GCA 90 bp GAAGCTGGGGTCGTCAGTTGCCTCCCCCAATGCATCCTGGGCCTCTaGTTTCCCTGCCCAGTCTGGGCACTGGTCCTGCAGTGGAGTGGA +
Preference number: 1 (lower is better)
Translates to: EAGVVSCLPQCILGL*FPCPVWALVLQWSG
Trigger: TCCACTCCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCCCAGGATGCATTGGGGGAGGCAACTGACGACCCCAGCTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp CCGGGGAGTGGCAGTCATCACTGTGCAAAGCCTCCAGGACCTGACTaGTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCA +
Preference number: 1 (lower is better)
Translates to: PGSGSHHCAKPPGPD*WDCLWSGGRSAPDS
Trigger: TGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGCACAGTGATGACTGCCACTCCCCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp AGGCTGCTCTGGGAAGCAGGTGGCCGCCGTGGACTCGGCTCTCCTTaGTTGGGCAGCTCCAATGGTAGCTGGGGTTCCTTGGAAGGGCAT +
Preference number: 1 (lower is better)
Translates to: RLLWEAGGRRGLGSP*LGSSNGSWGSLEGH
Trigger: ATGCCCTTCCAAGGAACCCCAGCTACCATTGGAGCTGCCCAAGCAAGGAGAGCCGAGTCCACGGCGGCCACCTGCTTCCCAGAGCAGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 90 bp GCAAGTATCTGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTaGTCTGCCATGGCGGCTGGGCTGGTTTCAATGCTGAGAAGGCTG +
Preference number: 1 (lower is better)
Translates to: ASIWASTGCRPPVGV*SAMAAGLVSMLRRL
Trigger: CAGCCTTCTCAGCATTGAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAGATACTTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp TGCTCTGGGAAGCAGGTGGCCGCCGTGGACTCGGCTCTCCTTGCTTaGGCAGCTCCAATGGTAGCTGGGGTTCCTTGGAAGGGCATTGGG +
Preference number: 1 (lower is better)
Translates to: CSGKQVAAVDSALLA*AAPMVAGVPWKGIG
Trigger: CCCAATGCCCTTCCAAGGAACCCCAGCTACCATTGGAGCTGCCCAAGCAAGGAGAGCCGAGTCCACGGCGGCCACCTGCTTCCCAGAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 90 bp CTGCCAAGTCCACAAGGTCCTGAAGGGCTTGACGCTCCCTCTGGCTaGAGGACAGCAGCCGGATCTTGGGGCTGTGGCTCACAGGAAGGC +
Preference number: 1 (lower is better)
Translates to: LPSPQGPEGLDAPSG*RTAAGSWGCGSQEG
Trigger: GCCTTCCTGTGAGCCACAGCCCCAAGATCCGGCTGCTGTCCTCCAGCCAGAGGGAGCGTCAAGCCCTTCAGGACCTTGTGGACTTGGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR GCA 90 bp AGCTTGCCCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTaGAGCTCGGCCAGCTCCACAGGCTGGTACCTCAGGACCTGCCTG +
Preference number: 1 (lower is better)
Translates to: SLPMATGMPFCFSSA*SSASSTGWYLRTCL
Trigger: CAGGCAGGTCCTGAGGTACCAGCCTGTGGAGCTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGCAAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 90 bp TCGTCCCACAGAGCCTCTGGAGAGCCAGCCAGTGAGGACCGTTCCTaGGACTCTCTCAGCGTACCACAGCTTCCTCGGATGGGGGTGGTA +
Preference number: 1 (lower is better)
Translates to: SSHRASGEPASEDRS*DSLSVPQLPRMGVV
Trigger: TACCACCCCCATCCGAGGAAGCTGTGGTACGCTGAGAGAGTCTCAGGAACGGTCCTCACTGGCTGGCTCTCCAGAGGCTCTGTGGGACGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp GCATCCTGGGCCTCTGCTTTCCCTGCCCAGTCTGGGCACTGGTCCTaGAGTGGAGTGGAATGTCCTTCTTGTTCCCAGCTGGCTAGTGCC +
Preference number: 1 (lower is better)
Translates to: ASWASAFPAQSGHWS*SGVECPSCSQLASA
Trigger: GGCACTAGCCAGCTGGGAACAAGAAGGACATTCCACTCCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCCCAGGATGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp GTCGTCAGTTGCCTCCCCCAATGCATCCTGGGCCTCTGCTTTCCCTaGCCAGTCTGGGCACTGGTCCTGCAGTGGAGTGGAATGTCCTTC +
Preference number: 1 (lower is better)
Translates to: VVSCLPQCILGLCFP*PVWALVLQWSGMSF
Trigger: GAAGGACATTCCACTCCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCCCAGGATGCATTGGGGGAGGCAACTGACGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp ACTGAGCGTCCAGGATGTCCGACAGCTTGCCCATGGCCACAGGGATaGCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGCTCCACAG +
Preference number: 1 (lower is better)
Translates to: TERPGCPTACPWPQG*HSVSAQPAARPAPQ
Trigger: CTGTGGAGCTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGCAAGCTGTCGGACATCCTGGACGCTCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp GGGAGTGGCAGTCATCACTGTGCAAAGCCTCCAGGACCTGACTGCTaGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGT +
Preference number: 1 (lower is better)
Translates to: GSGSHHCAKPPGPDC*DCLWSGGRSAPDSS
Trigger: ACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGCACAGTGATGACTGCCACTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp CTGCCGTCCACAGAGGTAGCCATGGATTCCTGGGAGGCTGGGAGCTaGGCGTCACCATCAGGATGTGAAGGCTCCCCAGTTGGCAACCTT +
Preference number: 1 (lower is better)
Translates to: LPSTEVAMDSWEAGS*ASPSGCEGSPVGNL
Trigger: AAGGTTGCCAACTGGGGAGCCTTCACATCCTGATGGTGACGCCCAGCTCCCAGCCTCCCAGGAATCCATGGCTACCTCTGTGGACGGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp CCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGCTCCACAGGCTaGTACCTCAGGACCTGCCTGTGCAGGGCAGGCTTAGAGCGGATA +
Preference number: 1 (lower is better)
Translates to: PFCFSSACSSASSTG*YLRTCLCRAGLERI
Trigger: TATCCGCTCTAAGCCTGCCCTGCACAGGCAGGTCCTGAGGTACCAGCCTGTGGAGCTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 90 bp CCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCAATGCTaGGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCT +
Preference number: 1 (lower is better)
Translates to: PSVSGLPWRLGWFQC*EGWTQLPVPEYRAA
Trigger: AGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 90 bp CTCCTCATTCCAGTCGTCCCACAGAGCCTCTGGAGAGCCAGCCAGTaGGGACCGTTCCTGAGACTCTCTCAGCGTACCACAGCTTCCTCG +
Preference number: 1 (lower is better)
Translates to: LLIPVVPQSLWRASQ*GPFLRLSQRTTASS
Trigger: CGAGGAAGCTGTGGTACGCTGAGAGAGTCTCAGGAACGGTCCTCACTGGCTGGCTCTCCAGAGGCTCTGTGGGACGACTGGAATGAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp CTGCAGCCCAGCGCAGACTGGTTTCCCAGCTGTCCTTCCTCCCCGTaGTGTAGCCCGGCCTCTCTCTTCAGTGGGCTTTGGAAATGTTCA +
Preference number: 1 (lower is better)
Translates to: LQPSADWFPSCPSSP*CSPASLFSGLWKCS
Trigger: TGAACATTTCCAAAGCCCACTGAAGAGAGAGGCCGGGCTACAGCACGGGGAGGAAGGACAGCTGGGAAACCAGTCTGCGCTGGGCTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp GGCAGTCATCACTGTGCAAAGCCTCCAGGACCTGACTGCTGGGACTaGTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTGGTCAA +
Preference number: 1 (lower is better)
Translates to: GSHHCAKPPGPDCWD*LWSGGRSAPDSSGQ
Trigger: TTGACCACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGCACAGTGATGACTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp CCCAATGCATCCTGGGCCTCTGCTTTCCCTGCCCAGTCTGGGCACTaGTCCTGCAGTGGAGTGGAATGTCCTTCTTGTTCCCAGCTGGCT +
Preference number: 1 (lower is better)
Translates to: PNASWASAFPAQSGH*SCSGVECPSCSQLA
Trigger: AGCCAGCTGGGAACAAGAAGGACATTCCACTCCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCCCAGGATGCATTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp TGCCTCCCCCAATGCATCCTGGGCCTCTGCTTTCCCTGCCCAGTCTaGGCACTGGTCCTGCAGTGGAGTGGAATGTCCTTCTTGTTCCCA +
Preference number: 1 (lower is better)
Translates to: CLPQCILGLCFPCPV*ALVLQWSGMSFLFP
Trigger: TGGGAACAAGAAGGACATTCCACTCCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCCCAGGATGCATTGGGGGAGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp AGGACCGTTCCTGAGACTCTCTCAGCGTACCACAGCTTCCTCGGATaGGGGTGGTACCAAGTCCCGGGGAGTGGCAGTCATCACTGTGCA +
Preference number: 1 (lower is better)
Translates to: RTVPETLSAYHSFLG*GWYQVPGSGSHHCA
Trigger: TGCACAGTGATGACTGCCACTCCCCGGGACTTGGTACCACCCCCATCCGAGGAAGCTGTGGTACGCTGAGAGAGTCTCAGGAACGGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp AGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTaGCTTTCAGGAACACACAGGATGGGGACCCTGGTTGGGCCAAAG +
Preference number: 1 (lower is better)
Translates to: SEEGSGLALVAGVAH*LSGTHRMGTLVGPK
Trigger: CTTTGGCCCAACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp CATGGCGGCTGGGCTGGTTTCAATGCTGAGAAGGCTGGACCCAGTTaGCTGTCCCAGAATATAGGGCAGCTGTGCTTGGGTGTGCTGGAC +
Preference number: 1 (lower is better)
Translates to: HGGWAGFNAEKAGPS*LSQNIGQLCLGVLD
Trigger: GTCCAGCACACCCAAGCACAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAAACCAGCCCAGCCGCCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp TGCACCGTCTTCCCCATGCGGGTTAGTGCTCCCATCTGGGTCTGCTaGTCTCCCCCACTGGAGAAGCTTCCTCTGCGTAGCAGCAAATTC +
Preference number: 1 (lower is better)
Translates to: CTVFPMRVSAPIWVC*SPPLEKLPLRSSKF
Trigger: GAATTTGCTGCTACGCAGAGGAAGCTTCTCCAGTGGGGGAGAGCAGCAGACCCAGATGGGAGCACTAACCCGCATGGGGAAGACGGTGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp GAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTaGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTG +
Preference number: 1 (lower is better)
Translates to: ERQVKKAQVLLWSLV*PTAFQEHTGWGPWL
Trigger: CAACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp GTTCCTGAGACTCTCTCAGCGTACCACAGCTTCCTCGGATGGGGGTaGTACCAAGTCCCGGGGAGTGGCAGTCATCACTGTGCAAAGCCT +
Preference number: 1 (lower is better)
Translates to: VPETLSAYHSFLGWG*YQVPGSGSHHCAKP
Trigger: AGGCTTTGCACAGTGATGACTGCCACTCCCCGGGACTTGGTACCACCCCCATCCGAGGAAGCTGTGGTACGCTGAGAGAGTCTCAGGAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 90 bp CAGGGGGCCGGTCCGCTCCAGATTCAAGTGGTCAATTGGAATTGGTaGGAGAGGCTCATTCCAACAGTAGTCACCCATGGGACCTGGGGG +
Preference number: 1 (lower is better)
Translates to: QGAGPLQIQVVNWNW*ERLIPTVVTHGTWG
Trigger: CCCCCAGGTCCCATGGGTGACTACTGTTGGAATGAGCCTCTCTCACCAATTCCAATTGACCACTTGAATCTGGAGCGGACCGGCCCCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 90 bp GGTGTCTCTGGCCTGTCTGGCTTCCGAGTTCTGGTACTCAGCATTTaGGCCACAGGTGGGGCCTCTGGAGACTGTCCTTCCTCCTCATTC +
Preference number: 1 (lower is better)
Translates to: GVSGLSGFRVLVLSI*ATGGASGDCPSSSF
Trigger: GAATGAGGAGGAAGGACAGTCTCCAGAGGCCCCACCTGTGGCTCAAATGCTGAGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 90 bp TTGAGTTTCTCCTTTCGGGCTGCAGCAGTGGTGAAGGTGATGCACTaGGCGTCCAGGATGTCCGACAGCTTGCCCATGGCCACAGGGATG +
Preference number: 1 (lower is better)
Translates to: LSFSFRAAAVVKVMH*ASRMSDSLPMATGM
Trigger: CATCCCTGTGGCCATGGGCAAGCTGTCGGACATCCTGGACGCTCAGTGCATCACCTTCACCACTGCTGCAGCCCGAAAGGAGAAACTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp ACAGAAGACTGTGACACAAGGCTGCAGGAGTGTGGAGTAGGTGCCTaGGCCATGTCTGCCTGCGTCTCCCTGACATGGTCACTCTGCTCT +
Preference number: 1 (lower is better)
Translates to: TEDCDTRLQECGVGA*AMSACVSLTWSLCS
Trigger: AGAGCAGAGTGACCATGTCAGGGAGACGCAGGCAGACATGGCCCAGGCACCTACTCCACACTCCTGCAGCCTTGTGTCACAGTCTTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp CATCACTGTGCAAAGCCTCCAGGACCTGACTGCTGGGACTGCTTGTaGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTGGTCAATTGGAA +
Preference number: 1 (lower is better)
Translates to: HHCAKPPGPDCWDCL*SGGRSAPDSSGQLE
Trigger: TTCCAATTGACCACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGCACAGTGATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp CTTCCGAGTTCTGGTACTCAGCATTTGAGCCACAGGTGGGGCCTCTaGAGACTGTCCTTCCTCCTCATTCCAGTCGTCCCACAGAGCCTC +
Preference number: 1 (lower is better)
Translates to: LPSSGTQHLSHRWGL*RLSFLLIPVVPQSL
Trigger: GAGGCTCTGTGGGACGACTGGAATGAGGAGGAAGGACAGTCTCCAGAGGCCCCACCTGTGGCTCAAATGCTGAGTACCAGAACTCGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp ATTGCCTGGGACTTGGTGTCTCTGGCCTGTCTGGCTTCCGAGTTCTaGTACTCAGCATTTGAGCCACAGGTGGGGCCTCTGGAGACTGTC +
Preference number: 1 (lower is better)
Translates to: IAWDLVSLACLASEF*YSAFEPQVGPLETV
Trigger: GACAGTCTCCAGAGGCCCCACCTGTGGCTCAAATGCTGAGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACCAAGTCCCAGGCAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR TCA 90 bp GCCCAGGTCCTCTGGCAGGTCTACTGGGTGGAGGCCTGTCATTTCTaGTCCTTTTTCTTTCGGCCTGAGGGCTGCCGTCTCTTGTGTTTG +
Preference number: 1 (lower is better)
Translates to: AQVLWQVYWVEACHF*SFFFRPEGCRLLCL
Trigger: CAAACACAAGAGACGGCAGCCCTCAGGCCGAAAGAAAAAGGATCAGAAATGACAGGCCTCCACCCAGTAGACCTGCCAGAGGACCTGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp GAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGTaGTTGGGTGTGCTGGACACAGAGAGGCAAGTGAAGAAGGCTCAG +
Preference number: 1 (lower is better)
Translates to: EKAGPSCLSQNIGQL*LGVLDTERQVKKAQ
Trigger: CTGAGCCTTCTTCACTTGCCTCTCTGTGTCCAGCACACCCAAGCACAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp AAGGCCTGGAAGTCTGCTTCAGTCTCCTGCAGTGGTTCTGTGTATTaGCTGGGACTTGGTGTCTCTGGCCTGTCTGGCTTCCGAGTTCTG +
Preference number: 1 (lower is better)
Translates to: KAWKSASVSCSGSVY*LGLGVSGLSGFRVL
Trigger: CAGAACTCGGAAGCCAGACAGGCCAGAGACACCAAGTCCCAGGCAATACACAGAACCACTGCAGGAGACTGAAGCAGACTTCCAGGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR CCA 90 bp CCTCTGCTTTCCCTGCCCAGTCTGGGCACTGGTCCTGCAGTGGAGTaGAATGTCCTTCTTGTTCCCAGCTGGCTAGTGCCTCTTCTTTTT +
Preference number: 1 (lower is better)
Translates to: PLLSLPSLGTGPAVE*NVLLVPSWLVPLLF
Trigger: AAAAAGAAGAGGCACTAGCCAGCTGGGAACAAGAAGGACATTCCACTCCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp CCTCTGACAGAAGCTGGGCAACACGATCTTCAATCTGTCTACCTGTaGTCTCAGAGTCTTGGGTTACCAACTGTGGGGGACACACCGGGG +
Preference number: 1 (lower is better)
Translates to: PLTEAGQHDLQSVYL*SQSLGLPTVGDTPG
Trigger: CCCCGGTGTGTCCCCCACAGTTGGTAACCCAAGACTCTGAGACCACAGGTAGACAGATTGAAGATCGTGTTGCCCAGCTTCTGTCAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 90 bp TCGGCTCTCCTTGCTTGGGCAGCTCCAATGGTAGCTGGGGTTCCTTaGAAGGGCATTGGGACACAATTGGAGGAAACAGTCCCACTGTGT +
Preference number: 1 (lower is better)
Translates to: SALLAWAAPMVAGVP*KGIGTQLEETVPLC
Trigger: ACACAGTGGGACTGTTTCCTCCAATTGTGTCCCAATGCCCTTCCAAGGAACCCCAGCTACCATTGGAGCTGCCCAAGCAAGGAGAGCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 90 bp AATGCATGGGCGGCCTCCGAGCTCACATCACTCAGCAGAGCACGCTaGGTCAGATCCCCGTCCTCTTCAGAAGAAAAGCTTTCAGTGCTT +
Preference number: 1 (lower is better)
Translates to: NAWAASELTSLSRAR*VRSPSSSEEKLSVL
Trigger: AAGCACTGAAAGCTTTTCTTCTGAAGAGGACGGGGATCTGACCCAGCGTGCTCTGCTGAGTGATGTGAGCTCGGAGGCCGCCCATGCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR GCA 90 bp AGCGCTGAGTTCCCACAGAAAGTTCCGCTTCCCTTCAGGCAGCCGTaGTCGCCAGCCTGCAGGTTCCAATTCTTCCTTAGAAATCTTGCT +
Preference number: 1 (lower is better)
Translates to: SAEFPQKVPLPFRQP*SPACRFQFFLRNLA
Trigger: AGCAAGATTTCTAAGGAAGAATTGGAACCTGCAGGCTGGCGAGCACGGCTGCCTGAAGGGAAGCGGAACTTTCTGTGGGAACTCAGCGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 90 bp TGGGCAACACGATCTTCAATCTGTCTACCTGTGGTCTCAGAGTCTTaGGTTACCAACTGTGGGGGACACACCGGGGGTCTCTTCTTGCGA +
Preference number: 1 (lower is better)
Translates to: WATRSSICLPVVSES*VTNCGGHTGGLFLR
Trigger: TCGCAAGAAGAGACCCCCGGTGTGTCCCCCACAGTTGGTAACCCAAGACTCTGAGACCACAGGTAGACAGATTGAAGATCGTGTTGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR TCA 90 bp CTACTGGGTGGAGGCCTGTCATTTCTGATCCTTTTTCTTTCGGCCTaGGGGCTGCCGTCTCTTGTGTTTGAGTTTCTCCTTTCGGGCTGC +
Preference number: 1 (lower is better)
Translates to: LLGGGLSFLILFLSA*GLPSLVFEFLLSGC
Trigger: GCAGCCCGAAAGGAGAAACTCAAACACAAGAGACGGCAGCCCTCAGGCCGAAAGAAAAAGGATCAGAAATGACAGGCCTCCACCCAGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp ACTTTGCTGGGGAAATCAGGATGCCCCTATTTCTGTGTCCCGCTATaGGGCTACTTTGTTGGCCTCTGTGGTGGCCAGCATCTTTCCGTA +
Preference number: 1 (lower is better)
Translates to: TLLGKSGCPYFCVPL*GYFVGLCGGQHLSV
Trigger: TACGGAAAGATGCTGGCCACCACAGAGGCCAACAAAGTAGCCCCATAGCGGGACACAGAAATAGGGGCATCCTGATTTCCCCAGCAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp CTATTTCTGTGTCCCGCTATGGGGCTACTTTGTTGGCCTCTGTGGTaGCCAGCATCTTTCCGTAATGTGACAATGTTACTGCCCCTCCTC +
Preference number: 1 (lower is better)
Translates to: LFLCPAMGLLCWPLW*PASFRNVTMLLPLL
Trigger: GAGGAGGGGCAGTAACATTGTCACATTACGGAAAGATGCTGGCCACCACAGAGGCCAACAAAGTAGCCCCATAGCGGGACACAGAAATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp TCTGCAGAGGTTGAACATGGCTCCTGTCATTTTTCCGTGTTTGCCTaGAAGGCCTGGAAGTCTGCTTCAGTCTCCTGCAGTGGTTCTGTG +
Preference number: 1 (lower is better)
Translates to: SAEVEHGSCHFSVFA*KAWKSASVSCSGSV
Trigger: CACAGAACCACTGCAGGAGACTGAAGCAGACTTCCAGGCCTTCCAGGCAAACACGGAAAAATGACAGGAGCCATGTTCAACCTCTGCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR TCA 90 bp CTCCACTGTCAAGCTGGAACTGGACATCACTCAGGTGTGGATTATTaGCCATGGCCCCAAAGTCTGTCACCAATAACCCAAGAGAGAGTG +
Preference number: 1 (lower is better)
Translates to: LHCQAGTGHHSGVDY*PWPQSLSPITQERV
Trigger: CACTCTCTCTTGGGTTATTGGTGACAGACTTTGGGGCCATGGTCAATAATCCACACCTGAGTGATGTCCAGTTCCAGCTTGACAGTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR GCA 90 bp GCTCCTAGAGTAATAGGCTGTGTGTGTGGCATGATCACAGAGAACTaGTGGGCTGTTTCCAGCATGGTCCTGCGTTCTAAGTTAGGTCTA +
Preference number: 1 (lower is better)
Translates to: APRVIGCVCGMITEN*WAVSSMVLRSKLGL
Trigger: TAGACCTAACTTAGAACGCAGGACCATGCTGGAAACAGCCCAGCAGTTCTCTGTGATCATGCCACACACACAGCCTATTACTCTAGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp CCTAGAGTAATAGGCTGTGTGTGTGGCATGATCACAGAGAACTGCTaGGCTGTTTCCAGCATGGTCCTGCGTTCTAAGTTAGGTCTAGGT +
Preference number: 1 (lower is better)
Translates to: PRVIGCVCGMITENC*AVSSMVLRSKLGLG
Trigger: ACCTAGACCTAACTTAGAACGCAGGACCATGCTGGAAACAGCCCAGCAGTTCTCTGTGATCATGCCACACACACAGCCTATTACTCTAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp TTTGGGAGGCAAGTTCTTTTTCTGGTTAGCACCTTTTGGTGTCTCTaGCCTGTCTGGCTTCCGAGTTCTGGTACTCAGCATTTGAGCCAC +
Preference number: 1 (lower is better)
Translates to: FGRQVLFLVSTFWCL*PVWLPSSGTQHLSH
Trigger: GTGGCTCAAATGCTGAGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACCAAAAGGTGCTAACCAGAAAAAGAACTTGCCTCCCAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR GCA 90 bp CAGCTGGCTAGTGCCTCTTCTTTTTCTAACCCAGATGACTCCATGTaGTCTGTATTTTCTAGCTGTCTGTTACTCTGGACACCTGCCAGG +
Preference number: 1 (lower is better)
Translates to: QLASASSFSNPDDSM*SVFSSCLLLWTPAR
Trigger: CCTGGCAGGTGTCCAGAGTAACAGACAGCTAGAAAATACAGAGCACATGGAGTCATCTGGGTTAGAAAAAGAAGAGGCACTAGCCAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp TTCCTTCCTTCTGGGGAATCTTTAGAAACTGACTCTGTCTTGGTGTaGTCCAGCTCCTCATCTGAGTCCAGTAACAGGATGACCTCATCC +
Preference number: 1 (lower is better)
Translates to: FLPSGESLETDSVLV*SSSSSESSNRMTSS
Trigger: GGATGAGGTCATCCTGTTACTGGACTCAGATGAGGAGCTGGAGCACACCAAGACAGAGTCAGTTTCTAAAGATTCCCCAGAAGGAAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp TATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGTTAGCACCTTTTaGTGTCTCTGGCCTGTCTGGCTTCCGAGTTCTGGTACTCAGCAT +
Preference number: 1 (lower is better)
Translates to: YRHFGRQVLFLVSTF*CLWPVWLPSSGTQH
Trigger: ATGCTGAGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACCAAAAGGTGCTAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 90 bp CTTGGCATTGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTaGTTAGCACCTTTTGGTGTCTCTGGCCTGTCTGGCTTCCGAGTT +
Preference number: 1 (lower is better)
Translates to: LGIGVIGTLGGKFFF*LAPFGVSGLSGFRV
Trigger: AACTCGGAAGCCAGACAGGCCAGAGACACCAAAAGGTGCTAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 90 bp GTCCAGTTCTTTCTTCAGCACCGGGGTCTCCATGATCGAATACCTTaGCATTGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTG +
Preference number: 1 (lower is better)
Translates to: VQFFLQHRGLHDRIP*HWSYRHFGRQVLFL
Trigger: CAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTATTCGATCATGGAGACCCCGGTGCTGAAGAAAGAACTGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp GAGTGTACTGGAAAATCTCCTTCAGTTTTAGAACCATCTGGCGTTTaGGCAGAGCACGGACTCCAAACCTGTCCAGTTCTTTCTTCAGCA +
Preference number: 1 (lower is better)
Translates to: ECTGKSPSVLEPSGV*AEHGLQTCPVLSSA
Trigger: TGCTGAAGAAAGAACTGGACAGGTTTGGAGTCCGTGCTCTGCCCAAACGCCAGATGGTTCTAAAACTGAAGGAGATTTTCCAGTACACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 90 bp GCCATGTCTGCCTGCGTCTCCCTGACATGGTCACTCTGCTCTTCATaGTCAACTGTTATTTGTGACAGTTCAGATGACACTCTTGGATTT +
Preference number: 1 (lower is better)
Translates to: AMSACVSLTWSLCSS*STVICDSSDDTLGF
Trigger: AAATCCAAGAGTGTCATCTGAACTGTCACAAATAACAGTTGATCATGAAGAGCAGAGTGACCATGTCAGGGAGACGCAGGCAGACATGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 90 bp TTCTTTCTTCAGCACCGGGGTCTCCATGATCGAATACCTTGGCATTaGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGTTAGC +
Preference number: 1 (lower is better)
Translates to: FFLQHRGLHDRIPWH*SYRHFGRQVLFLVS
Trigger: GCTAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTATTCGATCATGGAGACCCCGGTGCTGAAGAAAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 90 bp ATACTGAATAAGAAGTGGGCATCTCGCATAAAGAACAAACTTGTGTaGATAAAGCACCTCTCCACTGTCAAGCTGGAACTGGACATCACT +
Preference number: 1 (lower is better)
Translates to: ILNKKWASRIKNKLV*IKHLSTVKLELDIT
Trigger: AGTGATGTCCAGTTCCAGCTTGACAGTGGAGAGGTGCTTTATGCACACAAGTTTGTTCTTTATGCGAGATGCCCACTTCTTATTCAGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp ACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTGTAGCCATGGATTCCTaGGAGGCTGGGAGCTGGGCG +
Preference number: 2 (lower is better)
Translates to: TGCRPPVGVWSAMAAGLVVAMDS*EAGSWA
Trigger: CGCCCAGCTCCCAGCCTCCCAGGAATCCATGGCTAC...AACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGACGCTCCCTCTGGCTaGAGGACAGCAGCCGGATCT +
Preference number: 2 (lower is better)
Translates to: WASTGCRPPVGVWSAMAADAPSG*RTAAGS
Trigger: AGATCCGGCTGCTGTCCTCCAGCCAGAGGGAGCGTC...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp CTGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCAAAGCCTCCAGGACCTaGCTGCTGGGACTGCTTGTG +
Preference number: 2 (lower is better)
Translates to: LGKHRVQAARRCLVCHGGKASRT*LLGLLV
Trigger: CACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTT...GCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp ACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTCCAGGACCTGACTGCTaGGACTGCTTGTGGTCAGGG +
Preference number: 2 (lower is better)
Translates to: TGCRPPVGVWSAMAAGLVPGPDC*DCLWSG
Trigger: CCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGG...AACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CTGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCACAGTGGCAAGTATCTaGGCAAGCACAGGGTGCAGG +
Preference number: 2 (lower is better)
Translates to: LGKHRVQAARRCLVCHGGTVASI*ASTGCR
Trigger: CCTGCACCCTGTGCTTGCCCAGATACTTGCCACTGT...GCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp ACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTGTTAGTGCTCCCATCTaGGTCTGCTGCTCTCCCCCA +
Preference number: 2 (lower is better)
Translates to: TGCRPPVGVWSAMAAGLVVSAPI*VCCSPP
Trigger: TGGGGGAGAGCAGCAGACCCAGATGGGAGCACTAAC...AACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp ACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTAGCTGTGCTTGGGTGTaGTGGACACAGAGAGGCAAG +
Preference number: 2 (lower is better)
Translates to: TGCRPPVGVWSAMAAGLVSCAWV*WTQRGK
Trigger: CTTGCCTCTCTGTGTCCAGCACACCCAAGCACAGCT...AACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp ACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTACAGTGGCAAGTATCTaGGCAAGCACAGGGTGCAGG +
Preference number: 2 (lower is better)
Translates to: TGCRPPVGVWSAMAAGLVTVASI*ASTGCR
Trigger: CCTGCACCCTGTGCTTGCCCAGATACTTGCCACTGT...AACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 90 bp CTGCTCTGGGAAGCAGGTGGCCGCCGTGGACTCGGCTCTCCTTGCTaGGGCAGCTCCAATGGTAGCTGGGGTTCCTTGGAAGGGCATTGG +
Preference number: 2 (lower is better)
Translates to: LLWEAGGRRGLGSPC*GSSNGSWGSLEGHW
Trigger: CCAATGCCCTTCCAAGGAACCCCAGCTACCATTGGAGCTGCCCAAGCAAGGAGAGCCGAGTCCACGGCGGCCACCTGCTTCCCAGAGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGCCGTCTCTTGTGTTTaGGTTTCTCCTTTCGGGCTG +
Preference number: 2 (lower is better)
Translates to: WASTGCRPPVGVWSAMAAAVSCV*VSPFGL
Trigger: CAGCCCGAAAGGAGAAACTCAAACACAAGAGACGGC...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCAAGGCTGGACCCAGTTaGCTGTCCCAGAATATAGGG +
Preference number: 2 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFKAGPS*LSQNIG
Trigger: CCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTT...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp TTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGTTTCGTCGGTGTCTGGTCTaGCATGGCGGCTGGGCTGGT +
Preference number: 2 (lower is better)
Translates to: FWLQSSQGMSLQPSADWFRRCLV*HGGWAG
Trigger: ACCAGCCCAGCCGCCATGGCAGACCAGACACCGACG...AAACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp AGCGGATATAGCGCCTCACTGCCTCCTCTGTGTCTGCGGCCTGGATTGCGGCCTGGCTCACAGGAAGGCTaGTCTGGGAAGCAGGTGGCC +
Preference number: 2 (lower is better)
Translates to: SGYSASLPPLCLRPGLRPGSQEG*SGKQVA
Trigger: GGCCACCTGCTTCCCAGAGCAGCCTTCCTGTGAGCC...AGGCCGCAATCCAGGCCGCAGACACAGAGGAGGCAGTGAGGCGCTATATCCGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCAGCGAGACAGAGCCATaGCCACCAACAGATCTTCAG +
Preference number: 2 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFSETEP*PPTDLQ
Trigger: CTGAAGATCTGTTGGTGGCCATGGCTCTGTCTCGCT...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp TTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGTTTGGCCTCTGCTTTCCCTaGCCAGTCTGGGCACTGGTC +
Preference number: 2 (lower is better)
Translates to: FWLQSSQGMSLQPSADWFGLCFP*PVWALV
Trigger: GACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCC...AAACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp GTTTTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGTGCATCCTGGGCCTCTaGTTTCCCTGCCCAGTCTGG +
Preference number: 2 (lower is better)
Translates to: VFWLQSSQGMSLQPSADWCILGL*FPCPVW
Trigger: CCAGACTGGGCAGGGAAAGCAGAGGCCCAGGATGCA...CCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTGCTCAGGTCTTGCTCTaGTCGCTGGTGTGGCCCACT +
Preference number: 2 (lower is better)
Translates to: PDCWDCLWSGGRSAPDSSAQVLL*SLVWPT
Trigger: AGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGC...ACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GCCCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGTTTCCCTGCCCAGTCTaGGCACTGGTCCTGCAGTGG +
Preference number: 2 (lower is better)
Translates to: AHGHRDAILFQLSLQLGQFPCPV*ALVLQW
Trigger: CCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAA...CTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp CCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTGTGAAGGTGATGCACTaGGCGTCCAGGATGTCCGAC +
Preference number: 2 (lower is better)
Translates to: PDCWDCLWSGGRSAPDSSVKVMH*ASRMSD
Trigger: GTCGGACATCCTGGACGCTCAGTGCATCACCTTCAC...ACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp GGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTGCTGGTGTGGCCCACTaGCTTTCAGGAACACACAGG +
Preference number: 2 (lower is better)
Translates to: GRWCGPLPFRNTQDGDPGAGVAH*LSGTHR
Trigger: CCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGC...ACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GCCCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGCAGGAACACACAGGATaGGGACCCTGGTTGGGCCAA +
Preference number: 2 (lower is better)
Translates to: AHGHRDAILFQLSLQLGQQEHTG*GPWLGQ
Trigger: TTGGCCCAACCAGGGTCCCCATCCTGTGTGTTCCTG...CTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TCCTCGGATGGGGGTGGTACCAAGTCCCGGGGAGTGGCAGTCATCACTGTGCAAGCTCAGGTCTTGCTCTaGTCGCTGGTGTGGCCCACT +
Preference number: 2 (lower is better)
Translates to: SSDGGGTKSRGVAVITVQAQVLL*SLVWPT
Trigger: AGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGC...TTGCACAGTGATGACTGCCACTCCCCGGGACTTGGTACCACCCCCATCCGAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGCTGCCCAGTCTGGGCACTaGTCCTGCAGTGGAGTGGAA +
Preference number: 2 (lower is better)
Translates to: PWPQGCHSVSAQPAARPAAQSGH*SCSGVE
Trigger: TTCCACTCCACTGCAGGACCAGTGCCCAGACTGGGC...AGCTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TGTCCTTCCTCCTCATTCCAGTCGTCCCACAGAGCCTCTGGAGAGCCAGCCAGTACTCCTGCTGACCCCTaGAGTGGCAGGCACCAGCCA +
Preference number: 2 (lower is better)
Translates to: CPSSSFQSSHRASGEPASTPADP*SGRHQP
Trigger: TGGCTGGTGCCTGCCACTCCAGGGGTCAGCAGGAGT...ACTGGCTGGCTCTCCAGAGGCTCTGTGGGACGACTGGAATGAGGAGGAAGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp AGGCTGGTACCTCAGGACCTGCCTGTGCAGGGCAGGCTTAGAGCGGATATAGCGCACAGGTGGGGCCTCTaGAGACTGTCCTTCCTCCTC +
Preference number: 2 (lower is better)
Translates to: RLVPQDLPVQGRLRADIAHRWGL*RLSFLL
Trigger: GAGGAGGAAGGACAGTCTCCAGAGGCCCCACCTGTG...CGCTATATCCGCTCTAAGCCTGCCCTGCACAGGCAGGTCCTGAGGTACCAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTGATCCGGAACCAGGCTaGGAGGCATGTCAGTGTCTG +
Preference number: 2 (lower is better)
Translates to: PDCWDCLWSGGRSAPDSSDPEPG*EACQCL
Trigger: CAGACACTGACATGCCTCCCAGCCTGGTTCCGGATC...ACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp TTAGTGCTCCCATCTGGGTCTGCTGCTCTCCCCCACTGGAGAAGCTTCCTCTGCAATCACGACTCCTGCTaGCCCCTGGAGTGGCAGGCA +
Preference number: 2 (lower is better)
Translates to: LVLPSGSAALPHWRSFLCNHDSC*PLEWQA
Trigger: TGCCTGCCACTCCAGGGGTCAGCAGGAGTCGTGATT...GCAGAGGAAGCTTCTCCAGTGGGGGAGAGCAGCAGACCCAGATGGGAGCACTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp GTTTTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGCTGACTTATGCTAGGTaGCCAGGTCCTCTGGCAGGT +
Preference number: 2 (lower is better)
Translates to: VFWLQSSQGMSLQPSADWLTYAR*PGPLAG
Trigger: ACCTGCCAGAGGACCTGGGCACCTAGCATAAGTCAG...CCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp TTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGTTTGCTGGTGTGGCCCACTaGCTTTCAGGAACACACAGG +
Preference number: 2 (lower is better)
Translates to: FWLQSSQGMSLQPSADWFAGVAH*LSGTHR
Trigger: CCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGC...AAACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp AGCGGATATAGCGCCTCACTGCCTCCTCTGTGTCTGCGGCCTGGATTGCGGCCTGAACCATCTGGCGTTTaGGCAGAGCACGGACTCCAA +
Preference number: 2 (lower is better)
Translates to: SGYSASLPPLCLRPGLRPEPSGV*AEHGLQ
Trigger: TTGGAGTCCGTGCTCTGCCCAAACGCCAGATGGTTC...AGGCCGCAATCCAGGCCGCAGACACAGAGGAGGCAGTGAGGCGCTATATCCGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp GTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTCTGACTTATGCTAGGTaGCCAGGTCCTCTGGCAGGT +
Preference number: 2 (lower is better)
Translates to: VAGVAHCLSGTHRMGTLVLTYAR*PGPLAG
Trigger: ACCTGCCAGAGGACCTGGGCACCTAGCATAAGTCAG...AACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp CCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTATGGAAGGGGCTGTTTaGAGCCATGGGCCTTGTTTG +
Preference number: 2 (lower is better)
Translates to: PDCWDCLWSGGRSAPDSSMEGAV*SHGPCL
Trigger: CAAACAAGGCCCATGGCTGCAAACAGCCCCTTCCAT...ACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp TTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGTTTCCGTGCTCGCCAGCCTaGAGGTTCCAATTCTTCCTT +
Preference number: 2 (lower is better)
Translates to: FWLQSSQGMSLQPSADWFPCSPA*RFQFFL
Trigger: AAGGAAGAATTGGAACCTGCAGGCTGGCGAGCACGG...AAACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp ACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACAGGATGGGGACCCTaGTTGGGCCAAAGGGGGAAA +
Preference number: 2 (lower is better)
Translates to: TERQVKKAQVLLWSLVWPTGWGP*LGQRGK
Trigger: TTTCCCCCTTTGGCCCAACCAGGGTCCCCATCCTGT...GGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GTAGCCATGGATTCCTGGGAGGCTGGGAGCTGGGCGTCACCATCAGGATGTGAAGCTGCTCTCCCCCACTaGAGAAGCTTCCTCTGCGTA +
Preference number: 2 (lower is better)
Translates to: VAMDSWEAGSWASPSGCEAALPH*RSFLCV
Trigger: TACGCAGAGGAAGCTTCTCCAGTGGGGGAGAGCAGC...TTCACATCCTGATGGTGACGCCCAGCTCCCAGCCTCCCAGGAATCCATGGCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTCTTTGTTGGCCTCTGTaGTGGCCAGCATCTTTCCGT +
Preference number: 2 (lower is better)
Translates to: PDCWDCLWSGGRSAPDSSLCWPL*WPASFR
Trigger: ACGGAAAGATGCTGGCCACCACAGAGGCCAACAAAG...ACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TTGGAATTGGTGAGAGAGGCTCATTCCAACAGTAGTCACCCATGGGACCTGGGGTGCTGGGACTGCTTGTaGTCAGGGGGCCGGTCCGCT +
Preference number: 2 (lower is better)
Translates to: LELVREAHSNSSHPWDLGCWDCL*SGGRSA
Trigger: AGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCA...CCCCAGGTCCCATGGGTGACTACTGTTGGAATGAGCCTCTCTCACCAATTCCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp AACGCAGATCCGGAACCAGGCTGGGAGGCATGTCAGTGTCTGCCATGTAGAGGTCTCAGCAGAGCACGCTaGGTCAGATCCCCGTCCTCT +
Preference number: 2 (lower is better)
Translates to: NADPEPGWEACQCLPCRGLSRAR*VRSPSS
Trigger: AGAGGACGGGGATCTGACCCAGCGTGCTCTGCTGAG...ACCTCTACATGGCAGACACTGACATGCCTCCCAGCCTGGTTCCGGATCTGCGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CAA 90 bp AGTCATCACTGTGCAAAGCCTCCAGGACCTGACTGCTGGGACTGCTaGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTGGTCAATTG +
Preference number: 2 (lower is better)
Translates to: SHHCAKPPGPDCWDC*WSGGRSAPDSSGQL
Trigger: CAATTGACCACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGCACAGTGATGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp TCCGACAGCTTGCCCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCCGGGTACTGACTGTGTaGGGTCAATGGGTGGAGACT +
Preference number: 2 (lower is better)
Translates to: SDSLPMATGMPFCFSSACRVLTV*GQWVET
Trigger: AGTCTCCACCCATTGACCTCACACAGTCAGTACCCG...GCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGCAAGCTGTCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTTTCAACATCAATGACTaGAAACAGTTCAGAGGACCT +
Preference number: 2 (lower is better)
Translates to: WASTGCRPPVGVWSAMAAFNIND*KQFRGP
Trigger: AGGTCCTCTGAACTGTTTTCAGTCATTGATGTTGAA...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp GGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTGCTCCCTTTTGGTGGTaGCTCCTTTCCGTTTCAAAC +
Preference number: 2 (lower is better)
Translates to: GRWCGPLPFRNTQDGDPGAPFWW*LLSVSN
Trigger: GTTTGAAACGGAAAGGAGTCACCACCAAAAGGGAGC...ACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp TTAGTGCTCCCATCTGGGTCTGCTGCTCTCCCCCACTGGAGAAGCTTCCTCTGCAGCTGTGCTTGGGTGTaGTGGACACAGAGAGGCAAG +
Preference number: 2 (lower is better)
Translates to: LVLPSGSAALPHWRSFLCSCAWV*WTQRGK
Trigger: CTTGCCTCTCTGTGTCCAGCACACCCAAGCACAGCT...GCAGAGGAAGCTTCTCCAGTGGGGGAGAGCAGCAGACCCAGATGGGAGCACTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp GAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCAAGGCTGGACCCAGTTaGCTGTCCCAGAATATAGGG +
Preference number: 2 (lower is better)
Translates to: EASEEGSGLALVAGVAHCKAGPS*LSQNIG
Trigger: CCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTT...GCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp CCTCCAGGACCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCATGGAGAAGCTTCCTCTaGGTAGCAGCAAATTCATAT +
Preference number: 2 (lower is better)
Translates to: PPGPDCWDCLWSGGRSAPWRSFL*VAANSY
Trigger: ATATGAATTTGCTGCTACGCAGAGGAAGCTTCTCCA...TGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp ACTCTTGGATTTGATGGAAGGGGCTGTTTGCAGCCATGGGCCTTGTTTGGGTGCGGCCTCTGCTTTCCCTaGCCAGTCTGGGCACTGGTC +
Preference number: 2 (lower is better)
Translates to: TLGFDGRGCLQPWALFGCGLCFP*PVWALV
Trigger: GACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCC...GCACCCAAACAAGGCCCATGGCTGCAAACAGCCCCTTCCATCAAATCCAAGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp TCCGACAGCTTGCCCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCAGTTGCCTCCCCCAATaGATCCTGGGCCTCTGCTTT +
Preference number: 2 (lower is better)
Translates to: SDSLPMATGMPFCFSSACSCLPQ*ILGLCF
Trigger: AAAGCAGAGGCCCAGGATGCATTGGGGGAGGCAACT...GCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGCAAGCTGTCGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGTGCTTGGGTCAGGAACACACAGGATaGGGACCCTGGTTGGGCCAA +
Preference number: 2 (lower is better)
Translates to: EKAGPSCLSQNIGQLCLGQEHTG*GPWLGQ
Trigger: TTGGCCCAACCAGGGTCCCCATCCTGTGTGTTCCTG...ACCCAAGCACAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp AACGCAGCTCCAAACTCAGCAGAGGAGCTTTTAGAGCTAAAGGAGTTGTCACTGCCGCCCGTCGGTGTCTaGTCTGCCATGGCGGCTGGG +
Preference number: 2 (lower is better)
Translates to: NAAPNSAEELLELKELSLPPVGV*SAMAAG
Trigger: CCCAGCCGCCATGGCAGACCAGACACCGACGGGCGG...CAGTGACAACTCCTTTAGCTCTAAAAGCTCCTCTGCTGAGTTTGGAGCTGCGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GTATTGCCTGGGACTTGGTGTCTCTGGCCTGTCTGGCTTCCGAGTTCTGGTACTTTTCCCTGCCCAGTCTaGGCACTGGTCCTGCAGTGG +
Preference number: 2 (lower is better)
Translates to: VLPGTWCLWPVWLPSSGTFPCPV*ALVLQW
Trigger: CCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAA...AGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACCAAGTCCCAGGCAATAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR-3UTR CCA 90 bp CTGCTGACCCCTGGAGTGGCAGGCACCAGCCAAGAGGTGTCTGTAGCACTGTCCTGTTGGCCTCTGTGGTaGCCAGCATCTTTCCGTAAT +
Preference number: 2 (lower is better)
Translates to: LLTPGVAGTSQEVSVALSCWPLW*PASFRN
Trigger: ATTACGGAAAGATGCTGGCCACCACAGAGGCCAACA...GGACAGTGCTACAGACACCTCTTGGCTGGTGCCTGCCACTCCAGGGGTCAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GCCCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGATCACAGAGAACTGCTaGGCTGTTTCCAGCATGGTC +
Preference number: 2 (lower is better)
Translates to: AHGHRDAILFQLSLQLGQITENC*AVSSMV
Trigger: GACCATGCTGGAAACAGCCCAGCAGTTCTCTGTGAT...CTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GTTTTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGTCTCCACTGTCAAGCTaGAACTGGACATCACTCAGG +
Preference number: 2 (lower is better)
Translates to: VFWLQSSQGMSLQPSADWSPLSS*NWTSLR
Trigger: CCTGAGTGATGTCCAGTTCCAGCTTGACAGTGGAGA...CCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CAA 90 bp AAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGTGCTaGGGTGTGCTGGACACAGAGAGGCAAGTGAAGAAGGCTCAGGTC +
Preference number: 2 (lower is better)
Translates to: KAGPSCLSQNIGQLC*GVLDTERQVKKAQV
Trigger: GACCTGAGCCTTCTTCACTTGCCTCTCTGTGTCCAGCACACCCAAGCACAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 90 bp TGGTGTCTCTGGCCTGTCTGGCTTCCGAGTTCTGGTACTCAGCATTaGAGCCACAGGTGGGGCCTCTGGAGACTGTCCTTCCTCCTCATT +
Preference number: 2 (lower is better)
Translates to: WCLWPVWLPSSGTQH*SHRWGLWRLSFLLI
Trigger: AATGAGGAGGAAGGACAGTCTCCAGAGGCCCCACCTGTGGCTCAAATGCTGAGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 90 bp CTCGGCTCTCCTTGCTTGGGCAGCTCCAATGGTAGCTGGGGTTCCTaGGAAGGGCATTGGGACACAATTGGAGGAAACAGTCCCACTGTG +
Preference number: 2 (lower is better)
Translates to: LGSPCLGSSNGSWGS*EGHWDTIGGNSPTV
Trigger: CACAGTGGGACTGTTTCCTCCAATTGTGTCCCAATGCCCTTCCAAGGAACCCCAGCTACCATTGGAGCTGCCCAAGCAAGGAGAGCCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp TCCGACAGCTTGCCCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCATCCACAGAAGACTGTaGCACAAGGCTGCAGGAGTG +
Preference number: 2 (lower is better)
Translates to: SDSLPMATGMPFCFSSACIHRRL*HKAAGV
Trigger: CACTCCTGCAGCCTTGTGTCACAGTCTTCTGTGGAT...GCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGCAAGCTGTCGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp TTGGAATTGGTGAGAGAGGCTCATTCCAACAGTAGTCACCCATGGGACCTGGGGTGGAGAGCCAGCCAGTaGGGACCGTTCCTGAGACTC +
Preference number: 2 (lower is better)
Translates to: LELVREAHSNSSHPWDLGWRASQ*GPFLRL
Trigger: GAGTCTCAGGAACGGTCCTCACTGGCTGGCTCTCCA...CCCCAGGTCCCATGGGTGACTACTGTTGGAATGAGCCTCTCTCACCAATTCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp GAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCGACTCCAGAGTCTGGTaGGTGTACTGGAAAATCTCC +
Preference number: 2 (lower is better)
Translates to: EASEEGSGLALVAGVAHCDSRVW*VYWKIS
Trigger: GGAGATTTTCCAGTACACTCACCAGACTCTGGAGTC...GCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp CCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGCTTTGTTGCTGAAACAGTaGCCCTTATCTGGAGGCTGG +
Preference number: 2 (lower is better)
Translates to: PWPQGCHSVSAQPAARPALLLKQ*PLSGGW
Trigger: CCAGCCTCCAGATAAGGGTCACTGTTTCAGCAACAA...AGCTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp CACGCTGGGTCAGATCCCCGTCCTCTTCAGAAGAAAAGCTTTCAGTGCTTACATCGTCGGTGTCTGGTCTaGCATGGCGGCTGGGCTGGT +
Preference number: 2 (lower is better)
Translates to: HAGSDPRPLQKKSFQCLHRRCLV*HGGWAG
Trigger: ACCAGCCCAGCCGCCATGGCAGACCAGACACCGACG...ATGTAAGCACTGAAAGCTTTTCTTCTGAAGAGGACGGGGATCTGACCCAGCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp TTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGTTTATGCCACCCTGGAAATaGTACTGTGTGACTGGGACA +
Preference number: 2 (lower is better)
Translates to: FWLQSSQGMSLQPSADWFMPPWK*YCVTGT
Trigger: TGTCCCAGTCACACAGTAGCATTTCCAGGGTGGCAT...AAACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp TTTTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGTTCCTTTTTCACGAAATaGAGAGGATCCTGGGCCCTG +
Preference number: 2 (lower is better)
Translates to: FSGCRAARGCLCSPAQTGSFFTK*RGSWAL
Trigger: CAGGGCCCAGGATCCTCTGCATTTCGTGAAAAAGGA...ACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp GTATTGCCTGGGACTTGGTGTCTCTGGCCTGTCTGGCTTCCGAGTTCTGGTACTGGCTGGTTTTCTGGCTaGAGAGCAGCCAGGGGATGT +
Preference number: 2 (lower is better)
Translates to: VLPGTWCLWPVWLPSSGTGWFSG*RAARGC
Trigger: ACATCCCCTGGCTGCTCTGCAGCCAGAAAACCAGCC...AGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACCAAGTCCCAGGCAATAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR-3UTR GCA 90 bp GAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCTACCACATCATCAGCTaGAGGCAGATTTGGCAGGCA +
Preference number: 2 (lower is better)
Translates to: EASEEGSGLALVAGVAHCYHIIS*RQIWQA
Trigger: TGCCTGCCAAATCTGCCTGCAGCTGATGATGTGGTA...GCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp CCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTAGTGGTTCTGTGTATTaGCTGGGACTTGGTGTCTCT +
Preference number: 2 (lower is better)
Translates to: PDCWDCLWSGGRSAPDSSSGSVY*LGLGVS
Trigger: AGAGACACCAAGTCCCAGGCAATACACAGAACCACT...ACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR-3UTR GCA 90 bp TTGGAATTGGTGAGAGAGGCTCATTCCAACAGTAGTCACCCATGGGACCTGGGGGGATGTCCGACAGCTTaGCCATGGCCACAGGGATGC +
Preference number: 2 (lower is better)
Translates to: LELVREAHSNSSHPWDLGGCPTA*PWPQGC
Trigger: GCATCCCTGTGGCCATGGGCAAGCTGTCGGACATCC...CCCCAGGTCCCATGGGTGACTACTGTTGGAATGAGCCTCTCTCACCAATTCCAA
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GGCCAGGACATGATGGCTGTGAAGAAGAGAGTCTGTGGTGCCTGGGGTAGGGATAGGGGACAACGGAGCTaGAGTGCAGGAAAGTACGCT +
Preference number: 2 (lower is better)
Translates to: GQDMMAVKKRVCGAWGRDRGQRS*SAGKYA
Trigger: AGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCT...ATCCCTACCCCAGGCACCACAGACTCTCTTCTTCACAGCCATCATGTCCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GTATTGCCTGGGACTTGGTGTCTCTGGCCTGTCTGGCTTCCGAGTTCTGGTACTACAGGATGGGGACCCTaGTTGGGCCAAAGGGGGAAA +
Preference number: 2 (lower is better)
Translates to: VLPGTWCLWPVWLPSSGTTGWGP*LGQRGK
Trigger: TTTCCCCCTTTGGCCCAACCAGGGTCCCCATCCTGT...AGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACCAAGTCCCAGGCAATAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR-3UTR CCA 90 bp TGGGTCTGTGATGAGCAATCACGACTCCTGCTGACCCCTGGAGTGGCAGGCACCTTGGGGATGCCACCCTaGAAATGCTACTGTGTGACT +
Preference number: 2 (lower is better)
Translates to: WVCDEQSRLLLTPGVAGTLGMPP*KCYCVT
Trigger: AGTCACACAGTAGCATTTCCAGGGTGGCATCCCCAA...GGTGCCTGCCACTCCAGGGGTCAGCAGGAGTCGTGATTGCTCATCACAGACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GGAGTGGCAGGCACCAGCCAAGAGGTGTCTGTAGCACTGTCCTCATCCAGGCTGGTAACTCCGGGACTTTaGAAGCTGAGACTTGGGACT +
Preference number: 2 (lower is better)
Translates to: GVAGTSQEVSVALSSSRLVTPGL*KLRLGT
Trigger: AGTCCCAAGTCTCAGCTTCCAAAGTCCCGGAGTTAC...CAGCCTGGATGAGGACAGTGCTACAGACACCTCTTGGCTGGTGCCTGCCACTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR-3UTR CCA 90 bp GCAGTGACCCCGACCTCCTCATCCTTGTCTTCATCTGAATACTCAAACGCAGCTGTAGCCATGGATTCCTaGGAGGCTGGGAGCTGGGCG +
Preference number: 2 (lower is better)
Translates to: AVTPTSSSLSSSEYSNAAVAMDS*EAGSWA
Trigger: CGCCCAGCTCCCAGCCTCCCAGGAATCCATGGCTAC...AGCTGCGTTTGAGTATTCAGATGAAGACAAGGATGAGGAGGTCGGGGTCACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTGCATTGGGACACAATTaGAGGAAACAGTCCCACTGT +
Preference number: 2 (lower is better)
Translates to: PDCWDCLWSGGRSAPDSSALGHN*RKQSHC
Trigger: ACAGTGGGACTGTTTCCTCCAATTGTGTCCCAATGC...ACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGCTCTGTCAAGCTGGAACTaGACATCACTCAGGTGTGGA +
Preference number: 2 (lower is better)
Translates to: PWPQGCHSVSAQPAARPALSSWN*TSLRCG
Trigger: TCCACACCTGAGTGATGTCCAGTTCCAGCTTGACAG...AGCTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CAA 90 bp TGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTGGTCAATTGGAATaGGTGAGAGAGGCTCATTCCAACAGTAGTCACCCATGGGACCTG +
Preference number: 2 (lower is better)
Translates to: WSGGRSAPDSSGQLE*VREAHSNSSHPWDL
Trigger: CAGGTCCCATGGGTGACTACTGTTGGAATGAGCCTCTCTCACCAATTCCAATTGACCACTTGAATCTGGAGCGGACCGGCCCCCTGACCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp GCCGTCCACAGAGGTAGCCATGGATTCCTGGGAGGCTGGGAGCTGGGCGTCACCTCACTCTGCTCTTCATaGTCAACTGTTATTTGTGAC +
Preference number: 2 (lower is better)
Translates to: AVHRGSHGFLGGWELGVTSLCSS*STVICD
Trigger: GTCACAAATAACAGTTGATCATGAAGAGCAGAGTGA...GGTGACGCCCAGCTCCCAGCCTCCCAGGAATCCATGGCTACCTCTGTGGACGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp AACGCAGATCCGGAACCAGGCTGGGAGGCATGTCAGTGTCTGCCATGTAGAGGTTGTAGTTGGAGACAGTaGTCTTGGGGATGCCACCCT +
Preference number: 2 (lower is better)
Translates to: NADPEPGWEACQCLPCRGCSWRQ*SWGCHP
Trigger: AGGGTGGCATCCCCAAGATCACTGTCTCCAACTACA...ACCTCTACATGGCAGACACTGACATGCCTCCCAGCCTGGTTCCGGATCTGCGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp GCCCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGAGTCCAGTAACAGGATaGCCTCATCCTCCTTTTTCA +
Preference number: 2 (lower is better)
Translates to: AHGHRDAILFQLSLQLGQSPVTG*PHPPFS
Trigger: TGAAAAAGGAGGATGAGGTCATCCTGTTACTGGACT...CTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp CCTACTTGTAGGATGCTGGTGACAGTGGCAAGTATCTGGGCAAGCACAGGGTGCCTGACTTATGCTAGGTaGCCAGGTCCTCTGGCAGGT +
Preference number: 2 (lower is better)
Translates to: PTCRMLVTVASIWASTGCLTYAR*PGPLAG
Trigger: ACCTGCCAGAGGACCTGGGCACCTAGCATAAGTCAG...GCACCCTGTGCTTGCCCAGATACTTGCCACTGTCACCAGCATCCTACAAGTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp CCTACTTGTAGGATGCTGGTGACAGTGGCAAGTATCTGGGCAAGCACAGGGTGCAGCTGTGCTTGGGTGTaGTGGACACAGAGAGGCAAG +
Preference number: 2 (lower is better)
Translates to: PTCRMLVTVASIWASTGCSCAWV*WTQRGK
Trigger: CTTGCCTCTCTGTGTCCAGCACACCCAAGCACAGCT...GCACCCTGTGCTTGCCCAGATACTTGCCACTGTCACCAGCATCCTACAAGTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CCTACTTGTAGGATGCTGGTGACAGTGGCAAGTATCTGGGCAAGCACAGGGTGCAGGGGACAACGGAGCTaGAGTGCAGGAAAGTACGCT +
Preference number: 2 (lower is better)
Translates to: PTCRMLVTVASIWASTGCRGQRS*SAGKYA
Trigger: AGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCT...GCACCCTGTGCTTGCCCAGATACTTGCCACTGTCACCAGCATCCTACAAGTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TTGGAATTGGTGAGAGAGGCTCATTCCAACAGTAGTCACCCATGGGACCTGGGGGTCTGCCATGGCGGCTaGGCTGGTTTCAATGCTGAG +
Preference number: 2 (lower is better)
Translates to: LELVREAHSNSSHPWDLGVCHGG*AGFNAE
Trigger: CTCAGCATTGAAACCAGCCCAGCCGCCATGGCAGAC...CCCCAGGTCCCATGGGTGACTACTGTTGGAATGAGCCTCTCTCACCAATTCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp AAGAAGTGGGCATCTCGCATAAAGAACAAACTTGTGTGCATAAAGCACCTCTCCCCGCCCGTCGGTGTCTaGTCTGCCATGGCGGCTGGG +
Preference number: 2 (lower is better)
Translates to: KKWASRIKNKLVCIKHLSPPVGV*SAMAAG
Trigger: CCCAGCCGCCATGGCAGACCAGACACCGACGGGCGG...GGAGAGGTGCTTTATGCACACAAGTTTGTTCTTTATGCGAGATGCCCACTTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTCTTCTTGTTCCCAGCTaGCTAGTGCCTCTTCTTTTT +
Preference number: 2 (lower is better)
Translates to: PDCWDCLWSGGRSAPDSSLLVPS*LVPLLF
Trigger: AAAAAGAAGAGGCACTAGCCAGCTGGGAACAAGAAG...ACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CTTTCCCTGCCCAGTCTGGGCACTGGTCCTGCAGTGGAGTGGAATGTCCTTCTTGGCTGTTTGCAGCCATaGGCCTTGTTTGGGTGCAAA +
Preference number: 2 (lower is better)
Translates to: LSLPSLGTGPAVEWNVLLGCLQP*ALFGCK
Trigger: TTTGCACCCAAACAAGGCCCATGGCTGCAAACAGCC...AAGAAGGACATTCCACTCCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GCTTTTAGAGCTAAAGGAGTTGTCACTGCCGTCCACAGAGGTAGCCATGGATTCAAATGCAGAGGATCCTaGGCCCTGGGGCTCAGGGGC +
Preference number: 2 (lower is better)
Translates to: AFRAKGVVTAVHRGSHGFKCRGS*ALGLRG
Trigger: GCCCCTGAGCCCCAGGGCCCAGGATCCTCTGCATTT...GAATCCATGGCTACCTCTGTGGACGGCAGTGACAACTCCTTTAGCTCTAAAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCCCTGGGGCTAAATTCTaGAACTTTCCTTCCTTCTGG +
Preference number: 2 (lower is better)
Translates to: EASEEGSGLALVAGVAHCPGAKF*NFPSFW
Trigger: CCAGAAGGAAGGAAAGTTCCAGAATTTAGCCCCAGG...GCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TGGGTCTGTGATGAGCAATCACGACTCCTGCTGACCCCTGGAGTGGCAGGCACCCCTGGGGCTAAATTCTaGAACTTTCCTTCCTTCTGG +
Preference number: 2 (lower is better)
Translates to: WVCDEQSRLLLTPGVAGTPGAKF*NFPSFW
Trigger: CCAGAAGGAAGGAAAGTTCCAGAATTTAGCCCCAGG...GGTGCCTGCCACTCCAGGGGTCAGCAGGAGTCGTGATTGCTCATCACAGACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GATGGGAAGCCACCTCATCATCACTGTCCCCAACTTCTACCACATCATCAGCTGCACAGCTTCCTCGGATaGGGGTGGTACCAAGTCCCG +
Preference number: 2 (lower is better)
Translates to: DGKPPHHHCPQLLPHHQLHSFLG*GWYQVP
Trigger: CGGGACTTGGTACCACCCCCATCCGAGGAAGCTGTG...CAGCTGATGATGTGGTAGAAGTTGGGGACAGTGATGATGAGGTGGCTTCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp AGCGGATATAGCGCCTCACTGCCTCCTCTGTGTCTGCGGCCTGGATTGCGGCCTCCCTTATCTGGAGGCTaGGAGATAGAAGTTTCTGAT +
Preference number: 2 (lower is better)
Translates to: SGYSASLPPLCLRPGLRPPLSGG*EIEVSD
Trigger: ATCAGAAACTTCTATCTCCCAGCCTCCAGATAAGGG...AGGCCGCAATCCAGGCCGCAGACACAGAGGAGGCAGTGAGGCGCTATATCCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GAGCGAGACAGAGCCATGGCCACCAACAGATCTTCAGACGGAGCCTCAGGCTTAGACTTTCCTCCTCCTTaGCTCCCTTTTGGTGGTGAC +
Preference number: 2 (lower is better)
Translates to: ERDRAMATNRSSDGASGLDFPPP*LPFGGD
Trigger: GTCACCACCAAAAGGGAGCCAAGGAGGAGGAAAGTC...TAAGCCTGAGGCTCCGTCTGAAGATCTGTTGGTGGCCATGGCTCTGTCTCGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CAA 90 bp TGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTGGTCAATaGGAATTGGTGAGAGAGGCTCATTCCAACAGTAGTCACCCATGG +
Preference number: 2 (lower is better)
Translates to: CLWSGGRSAPDSSGQ*ELVREAHSNSSHPW
Trigger: CCATGGGTGACTACTGTTGGAATGAGCCTCTCTCACCAATTCCAATTGACCACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 90 bp GCCTGGATTGCGGCCTGTGATGCAGTGACCCCGACCTCCTCATCCTaGTCTTCATCTGAATACTCAAACGCAGCTCCAAACTCAGCAGAG +
Preference number: 2 (lower is better)
Translates to: AWIAACDAVTPTSSS*SSSEYSNAAPNSAE
Trigger: CTCTGCTGAGTTTGGAGCTGCGTTTGAGTATTCAGATGAAGACAAGGATGAGGAGGTCGGGGTCACTGCATCACAGGCCGCAATCCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp GAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCGACACTCACAGGCTGTaGAAACCCAAACTTCTGTTT +
Preference number: 2 (lower is better)
Translates to: EASEEGSGLALVAGVAHCDTHRL*KPKLLF
Trigger: AAACAGAAGTTTGGGTTTTCACAGCCTGTGAGTGTC...GCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp TTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGTTTGACACTCACAGGCTGTaGAAACCCAAACTTCTGTTT +
Preference number: 2 (lower is better)
Translates to: FWLQSSQGMSLQPSADWFDTHRL*KPKLLF
Trigger: AAACAGAAGTTTGGGTTTTCACAGCCTGTGAGTGTC...AAACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp CCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGCTGGAATCTTTAGAAACTaGCTCTGTCTTGGTGTGCTC +
Preference number: 2 (lower is better)
Translates to: PWPQGCHSVSAQPAARPAGIFRN*LCLGVL
Trigger: GAGCACACCAAGACAGAGTCAGTTTCTAAAGATTCC...AGCTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp ACTCTTGGATTTGATGGAAGGGGCTGTTTGCAGCCATGGGCCTTGTTTGGGTGCTCTGGGCACTGGTCCTaGAGTGGAGTGGAATGTCCT +
Preference number: 2 (lower is better)
Translates to: TLGFDGRGCLQPWALFGCSGHWS*SGVECP
Trigger: AGGACATTCCACTCCACTGCAGGACCAGTGCCCAGA...GCACCCAAACAAGGCCCATGGCTGCAAACAGCCCCTTCCATCAAATCCAAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp GATGGGAAGCCACCTCATCATCACTGTCCCCAACTTCTACCACATCATCAGCTGTGGTACCTCAGGACCTaGCTGTGCAGGGCAGGCTTA +
Preference number: 2 (lower is better)
Translates to: DGKPPHHHCPQLLPHHQLWYLRT*LCRAGL
Trigger: TAAGCCTGCCCTGCACAGGCAGGTCCTGAGGTACCA...CAGCTGATGATGTGGTAGAAGTTGGGGACAGTGATGATGAGGTGGCTTCCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTCTTAACACAAATGGGTaGAGCCCACAAACATGCTTA +
Preference number: 2 (lower is better)
Translates to: GRWCGPLPFRNTQDGDPGLNTNG*SPQTCL
Trigger: TAAGCATGTTTGTGGGCTCCACCCATTTGTGTTAAG...ACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp AGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTTTCACAGTCCTCACTaGTCTCTTCTGGCTGTTCTC +
Preference number: 2 (lower is better)
Translates to: REASEEGSGLALVAGVAHFHSPH*SLLAVL
Trigger: GAGAACAGCCAGAAGAGACCAGTGAGGACTGTGAAA...GTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TGGGTCTGTGATGAGCAATCACGACTCCTGCTGACCCCTGGAGTGGCAGGCACCCTTCTTGTTCCCAGCTaGCTAGTGCCTCTTCTTTTT +
Preference number: 2 (lower is better)
Translates to: WVCDEQSRLLLTPGVAGTLLVPS*LVPLLF
Trigger: AAAAAGAAGAGGCACTAGCCAGCTGGGAACAAGAAG...GGTGCCTGCCACTCCAGGGGTCAGCAGGAGTCGTGATTGCTCATCACAGACCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CACGCTGGGTCAGATCCCCGTCCTCTTCAGAAGAAAAGCTTTCAGTGCTTACATTCCCCCAATGCATCCTaGGCCTCTGCTTTCCCTGCC +
Preference number: 2 (lower is better)
Translates to: HAGSDPRPLQKKSFQCLHSPNAS*ASAFPA
Trigger: GGCAGGGAAAGCAGAGGCCCAGGATGCATTGGGGGA...ATGTAAGCACTGAAAGCTTTTCTTCTGAAGAGGACGGGGATCTGACCCAGCGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GCTTTTAGAGCTAAAGGAGTTGTCACTGCCGTCCACAGAGGTAGCCATGGATTCCCAGGACCTGACTGCTaGGACTGCTTGTGGTCAGGG +
Preference number: 2 (lower is better)
Translates to: AFRAKGVVTAVHRGSHGFPGPDC*DCLWSG
Trigger: CCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGG...GAATCCATGGCTACCTCTGTGGACGGCAGTGACAACTCCTTTAGCTCTAAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 90 bp AACGCAGCTCCAAACTCAGCAGAGGAGCTTTTAGAGCTAAAGGAGTaGTCACTGCCGTCCACAGAGGTAGCCATGGATTCCTGGGAGGCT +
Preference number: 2 (lower is better)
Translates to: NAAPNSAEELLELKE*SLPSTEVAMDSWEA
Trigger: AGCCTCCCAGGAATCCATGGCTACCTCTGTGGACGGCAGTGACAACTCCTTTAGCTCTAAAAGCTCCTCTGCTGAGTTTGGAGCTGCGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 90 bp AGAGCCATGGCCACCAACAGATCTTCAGACGGAGCCTCAGGCTTATaGACTTTCCTCCTCCTTGGCTCCCTTTTGGTGGTGACTCCTTTC +
Preference number: 2 (lower is better)
Translates to: RAMATNRSSDGASGL*TFLLLGSLLVVTPF
Trigger: GAAAGGAGTCACCACCAAAAGGGAGCCAAGGAGGAGGAAAGTCAATAAGCCTGAGGCTCCGTCTGAAGATCTGTTGGTGGCCATGGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp TTGGAATTGGTGAGAGAGGCTCATTCCAACAGTAGTCACCCATGGGACCTGGGGACACAGAGAGGCAAGTaGAGAAGGCTCAGGTCTTGC +
Preference number: 2 (lower is better)
Translates to: LELVREAHSNSSHPWDLGTQRGK*RRLRSC
Trigger: GCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGTGT...CCCCAGGTCCCATGGGTGACTACTGTTGGAATGAGCCTCTCTCACCAATTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp ACCTCTCCACTGTCAAGCTGGAACTGGACATCACTCAGGTGTGGATTATTGACCCTGCCTGCGTCTCCCTaGCATGGTCACTCTGCTCTT +
Preference number: 2 (lower is better)
Translates to: TSPLSSWNWTSLRCGLLTLPASP*HGHSAL
Trigger: AAGAGCAGAGTGACCATGTCAGGGAGACGCAGGCAG...GGTCAATAATCCACACCTGAGTGATGTCCAGTTCCAGCTTGACAGTGGAGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp TTAGTGCTCCCATCTGGGTCTGCTGCTCTCCCCCACTGGAGAAGCTTCCTCTGCAGTCCAGTAACAGGATaGCCTCATCCTCCTTTTTCA +
Preference number: 2 (lower is better)
Translates to: LVLPSGSAALPHWRSFLCSPVTG*PHPPFS
Trigger: TGAAAAAGGAGGATGAGGTCATCCTGTTACTGGACT...GCAGAGGAAGCTTCTCCAGTGGGGGAGAGCAGCAGACCCAGATGGGAGCACTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp GTAGCCATGGATTCCTGGGAGGCTGGGAGCTGGGCGTCACCATCAGGATGTGAAGGAATCTTTAGAAACTaGCTCTGTCTTGGTGTGCTC +
Preference number: 2 (lower is better)
Translates to: VAMDSWEAGSWASPSGCEGIFRN*LCLGVL
Trigger: GAGCACACCAAGACAGAGTCAGTTTCTAAAGATTCC...TTCACATCCTGATGGTGACGCCCAGCTCCCAGCCTCCCAGGAATCCATGGCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp CTGCCGTCTCTTGTGTTTGAGTTTCTCCTTTCGGGCTGCAGCAGTGGTGAAGGTGTTACTCTGGACACCTaGCAGGGAAGGCTCAGAAAC +
Preference number: 2 (lower is better)
Translates to: LPSLVFEFLLSGCSSGEGVTLDT*QGRLRN
Trigger: GTTTCTGAGCCTTCCCTGGCAGGTGTCCAGAGTAAC...ACCTTCACCACTGCTGCAGCCCGAAAGGAGAAACTCAAACACAAGAGACGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp ACCTCTCCACTGTCAAGCTGGAACTGGACATCACTCAGGTGTGGATTATTGACCGCTCAGCCCTTCCACTaGCAAGTCCACAAGGTCCTG +
Preference number: 2 (lower is better)
Translates to: TSPLSSWNWTSLRCGLLTAQPFH*QVHKVL
Trigger: CAGGACCTTGTGGACTTGGCAGTGGAAGGGCTGAGC...GGTCAATAATCCACACCTGAGTGATGTCCAGTTCCAGCTTGACAGTGGAGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TCCTTGTCTTCATCTGAATACTCAAACGCAGCTCCAAACTCAGCAGAGGAGCTTTCTTTCCCCCTCCTGTaGCGGCTGCAGAAGCTGGGG +
Preference number: 2 (lower is better)
Translates to: SLSSSEYSNAAPNSAEELSFPLL*RLQKLG
Trigger: CCCCAGCTTCTGCAGCCGCCACAGGAGGGGGAAAGA...AAGCTCCTCTGCTGAGTTTGGAGCTGCGTTTGAGTATTCAGATGAAGACAAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GATGGGAAGCCACCTCATCATCACTGTCCCCAACTTCTACCACATCATCAGCTGAGCTGCAGGCAGATTTaGCAGGCATGGTCTAGGTGC +
Preference number: 2 (lower is better)
Translates to: DGKPPHHHCPQLLPHHQLSCRQI*QAWSRC
Trigger: GCACCTAGACCATGCCTGCCAAATCTGCCTGCAGCT...CAGCTGATGATGTGGTAGAAGTTGGGGACAGTGATGATGAGGTGGCTTCCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TCCGACAGCTTGCCCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCCGAATACCTTGGCATTaGAGTTATAGGCACTTTGGG +
Preference number: 2 (lower is better)
Translates to: SDSLPMATGMPFCFSSACRIPWH*SYRHFG
Trigger: CCCAAAGTGCCTATAACTCCAATGCCAAGGTATTCG...GCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGCAAGCTGTCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 90 bp TCTTCACAGAGCTCAGGTTTCAGCAGAGTCTCCACTTCCTCCTCATaGTCTACCCACACCGACCTCAGGAGTTCCAGGAAAGTCTCTGCT +
Preference number: 2 (lower is better)
Translates to: SSQSSGFSRVSTSSS*STHTDLRSSRKVSA
Trigger: AGCAGAGACTTTCCTGGAACTCCTGAGGTCGGTGTGGGTAGACAATGAGGAGGAAGTGGAGACTCTGCTGAAACCTGAGCTCTGTGAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 90 bp AGCCGTGCTCGCCAGCCTGCAGGTTCCAATTCTTCCTTAGAAATCTaGCTGGCAAGAAGTGGTGGGGTGCAAGATAGTTCTGCTTCCTCT +
Preference number: 2 (lower is better)
Translates to: SRARQPAGSNSSLEI*LARSGGVQDSSASS
Trigger: AGAGGAAGCAGAACTATCTTGCACCCCACCACTTCTTGCCAGCAAGATTTCTAAGGAAGAATTGGAACCTGCAGGCTGGCGAGCACGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp GCTTTTAGAGCTAAAGGAGTTGTCACTGCCGTCCACAGAGGTAGCCATGGATTCTCTGGGCACTGGTCCTaGAGTGGAGTGGAATGTCCT +
Preference number: 2 (lower is better)
Translates to: AFRAKGVVTAVHRGSHGFSGHWS*SGVECP
Trigger: AGGACATTCCACTCCACTGCAGGACCAGTGCCCAGA...GAATCCATGGCTACCTCTGTGGACGGCAGTGACAACTCCTTTAGCTCTAAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp ACCTCTCCACTGTCAAGCTGGAACTGGACATCACTCAGGTGTGGATTATTGACCAGGGGACAACGGAGCTaGAGTGCAGGAAAGTACGCT +
Preference number: 2 (lower is better)
Translates to: TSPLSSWNWTSLRCGLLTRGQRS*SAGKYA
Trigger: AGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCT...GGTCAATAATCCACACCTGAGTGATGTCCAGTTCCAGCTTGACAGTGGAGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TTAGTGCTCCCATCTGGGTCTGCTGCTCTCCCCCACTGGAGAAGCTTCCTCTGCCTTAACACAAATGGGTaGAGCCCACAAACATGCTTA +
Preference number: 2 (lower is better)
Translates to: LVLPSGSAALPHWRSFLCLNTNG*SPQTCL
Trigger: TAAGCATGTTTGTGGGCTCCACCCATTTGTGTTAAG...GCAGAGGAAGCTTCTCCAGTGGGGGAGAGCAGCAGACCCAGATGGGAGCACTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CTTTCCCTGCCCAGTCTGGGCACTGGTCCTGCAGTGGAGTGGAATGTCCTTCTTAATAGGCTGTGTGTGTaGCATGATCACAGAGAACTG +
Preference number: 2 (lower is better)
Translates to: LSLPSLGTGPAVEWNVLLNRLCV*HDHREL
Trigger: CAGTTCTCTGTGATCATGCCACACACACAGCCTATT...AAGAAGGACATTCCACTCCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp AACGCAGCTCCAAACTCAGCAGAGGAGCTTTTAGAGCTAAAGGAGTTGTCACTGTTGGGTTACCAACTGTaGGGGACACACCGGGGGTCT +
Preference number: 2 (lower is better)
Translates to: NAAPNSAEELLELKELSLLGYQL*GTHRGS
Trigger: AGACCCCCGGTGTGTCCCCCACAGTTGGTAACCCAA...CAGTGACAACTCCTTTAGCTCTAAAAGCTCCTCTGCTGAGTTTGGAGCTGCGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CAA 90 bp TGTGACAGTTCAGATGACACTCTTGGATTTGATGGAAGGGGCTGTTaGCAGCCATGGGCCTTGTTTGGGTGCAAAGGCAAGCACTCTTTC +
Preference number: 2 (lower is better)
Translates to: CDSSDDTLGFDGRGC*QPWALFGCKGKHSF
Trigger: GAAAGAGTGCTTGCCTTTGCACCCAAACAAGGCCCATGGCTGCAAACAGCCCCTTCCATCAAATCCAAGAGTGTCATCTGAACTGTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 90 bp TTTTGTCTGCAGAGGTTGAACATGGCTCCTGTCATTTTTCCGTGTTaGCCTGGAAGGCCTGGAAGTCTGCTTCAGTCTCCTGCAGTGGTT +
Preference number: 2 (lower is better)
Translates to: FCLQRLNMAPVIFPC*PGRPGSLLQSPAVV
Trigger: AACCACTGCAGGAGACTGAAGCAGACTTCCAGGCCTTCCAGGCAAACACGGAAAAATGACAGGAGCCATGTTCAACCTCTGCAGACAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR-3UTR TCA 90 bp GCAGTGACCCCGACCTCCTCATCCTTGTCTTCATCTGAATACTCAAACGCAGCTACTTGTTCACACAGCTaGACAAGGTCACTCACACCA +
Preference number: 2 (lower is better)
Translates to: AVTPTSSSLSSSEYSNAATCSHS*TRSLTP
Trigger: TGGTGTGAGTGACCTTGTTCAGCTGTGTGAACAAGT...AGCTGCGTTTGAGTATTCAGATGAAGACAAGGATGAGGAGGTCGGGGTCACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp AGAGTAATAGGCTGTGTGTGTGGCATGATCACAGAGAACTGCTGGGCTGTTTCCTCCTTTTTCACGAAATaGAGAGGATCCTGGGCCCTG +
Preference number: 2 (lower is better)
Translates to: RVIGCVCGMITENCWAVSSFFTK*RGSWAL
Trigger: CAGGGCCCAGGATCCTCTGCATTTCGTGAAAAAGGA...GGAAACAGCCCAGCAGTTCTCTGTGATCATGCCACACACACAGCCTATTACTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp AGAGTAATAGGCTGTGTGTGTGGCATGATCACAGAGAACTGCTGGGCTGTTTCCTTGGGGATGCCACCCTaGAAATGCTACTGTGTGACT +
Preference number: 2 (lower is better)
Translates to: RVIGCVCGMITENCWAVSLGMPP*KCYCVT
Trigger: AGTCACACAGTAGCATTTCCAGGGTGGCATCCCCAA...GGAAACAGCCCAGCAGTTCTCTGTGATCATGCCACACACACAGCCTATTACTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 90 bp GGAACTTTCCTTCCTTCTGGGGAATCTTTAGAAACTGACTCTGTCTaGGTGTGCTCCAGCTCCTCATCTGAGTCCAGTAACAGGATGACC +
Preference number: 2 (lower is better)
Translates to: GTFLPSGESLETDSV*VCSSSSSESSNRMT
Trigger: GGTCATCCTGTTACTGGACTCAGATGAGGAGCTGGAGCACACCAAGACAGAGTCAGTTTCTAAAGATTCCCCAGAAGGAAGGAAAGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp TCCTTGTCTTCATCTGAATACTCAAACGCAGCTCCAAACTCAGCAGAGGAGCTTCTTGTGTGGTATAGGTaGAGCCATGACTGGCTGGGA +
Preference number: 2 (lower is better)
Translates to: SLSSSEYSNAAPNSAEELLVWYR*SHDWLG
Trigger: TCCCAGCCAGTCATGGCTTCACCTATACCACACAAG...AAGCTCCTCTGCTGAGTTTGGAGCTGCGTTTGAGTATTCAGATGAAGACAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp ACCTCTCCACTGTCAAGCTGGAACTGGACATCACTCAGGTGTGGATTATTGACCCATCTTTCCGTAATGTaGCAATGTTACTGCCCCTCC +
Preference number: 2 (lower is better)
Translates to: TSPLSSWNWTSLRCGLLTHLSVM*QCYCPS
Trigger: GGAGGGGCAGTAACATTGTCACATTACGGAAAGATG...GGTCAATAATCCACACCTGAGTGATGTCCAGTTCCAGCTTGACAGTGGAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp GCAGTGACCCCGACCTCCTCATCCTTGTCTTCATCTGAATACTCAAACGCAGCTATCCTTGTCTTCATCTaGATACTCAAACGCAGCTCC +
Preference number: 2 (lower is better)
Translates to: AVTPTSSSLSSSEYSNAAILVFI*ILKRSS
Trigger: GGAGCTGCGTTTGAGTATTCAGATGAAGACAAGGAT...AGCTGCGTTTGAGTATTCAGATGAAGACAAGGATGAGGAGGTCGGGGTCACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp AGTGATCTTGGGGATGCCACCCTGGAAATGCTACTGTGTGACTGGGACACTGAGTGGAGAAGCTTCCTCTaGGTAGCAGCAAATTCATAT +
Preference number: 2 (lower is better)
Translates to: SDLGDATLEMLLCDWDTEWRSFL*VAANSY
Trigger: ATATGAATTTGCTGCTACGCAGAGGAAGCTTCTCCA...CTCAGTGTCCCAGTCACACAGTAGCATTTCCAGGGTGGCATCCCCAAGATCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp GGGTCAGATCCCCGTCCTCTTCAGAAGAAAAGCTTTCAGTGCTTACATACTGAAGTTACTCTGGACACCTaGCAGGGAAGGCTCAGAAAC +
Preference number: 2 (lower is better)
Translates to: GSDPRPLQKKSFQCLHTEVTLDT*QGRLRN
Trigger: GTTTCTGAGCCTTCCCTGGCAGGTGTCCAGAGTAAC...TTCAGTATGTAAGCACTGAAAGCTTTTCTTCTGAAGAGGACGGGGATCTGACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp TTGGAATTGGTGAGAGAGGCTCATTCCAACAGTAGTCACCCATGGGACCTGGGGCCAGATGACTCCATGTaGTCTGTATTTTCTAGCTGT +
Preference number: 2 (lower is better)
Translates to: LELVREAHSNSSHPWDLGPDDSM*SVFSSC
Trigger: ACAGCTAGAAAATACAGAGCACATGGAGTCATCTGG...CCCCAGGTCCCATGGGTGACTACTGTTGGAATGAGCCTCTCTCACCAATTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GCTTTTAGAGCTAAAGGAGTTGTCACTGCCGTCCACAGAGGTAGCCATGGATTCTTTCACAGTCCTCACTaGTCTCTTCTGGCTGTTCTC +
Preference number: 2 (lower is better)
Translates to: AFRAKGVVTAVHRGSHGFFHSPH*SLLAVL
Trigger: GAGAACAGCCAGAAGAGACCAGTGAGGACTGTGAAA...GAATCCATGGCTACCTCTGTGGACGGCAGTGACAACTCCTTTAGCTCTAAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TACCTTGGCATTGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGTTAGTTAGTGCTCCCATCTaGGTCTGCTGCTCTCCCCCA +
Preference number: 2 (lower is better)
Translates to: YLGIGVIGTLGGKFFFWLVSAPI*VCCSPP
Trigger: TGGGGGAGAGCAGCAGACCCAGATGGGAGCACTAAC...TAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGTTAGCACCTTATTTTCCCCCAATGCATCCTaGGCCTCTGCTTTCCCTGCC +
Preference number: 2 (lower is better)
Translates to: WSYRHFGRQVLFLVSTLFSPNAS*ASAFPA
Trigger: GGCAGGGAAAGCAGAGGCCCAGGATGCATTGGGGGA...AAATAAGGTGCTAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR-3UTR CCA 90 bp GAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGTGCTTGGGTTTAAGGCTTTTGATTTaGGTCTGTGATGAGCAATCA +
Preference number: 2 (lower is better)
Translates to: EKAGPSCLSQNIGQLCLGLRLLI*VCDEQS
Trigger: TGATTGCTCATCACAGACCCAAATCAAAAGCCTTAA...ACCCAAGCACAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GGCCAGGACATGATGGCTGTGAAGAAGAGAGTCTGTGGTGCCTGGGGTAGGGATTTGGAAGCTGAGACTTaGGACTTCCAAAATATTCAT +
Preference number: 2 (lower is better)
Translates to: GQDMMAVKKRVCGAWGRDLEAET*DFQNIH
Trigger: ATGAATATTTTGGAAGTCCCAAGTCTCAGCTTCCAA...ATCCCTACCCCAGGCACCACAGACTCTCTTCTTCACAGCCATCATGTCCTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR-3UTR TCA 90 bp AAGAAGTGGGCATCTCGCATAAAGAACAAACTTGTGTGCATAAAGCACCTCTCCACACAGAGAGGCAAGTaGAGAAGGCTCAGGTCTTGC +
Preference number: 2 (lower is better)
Translates to: KKWASRIKNKLVCIKHLSTQRGK*RRLRSC
Trigger: GCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGTGT...GGAGAGGTGCTTTATGCACACAAGTTTGTTCTTTATGCGAGATGCCCACTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp AACGCAGCTCCAAACTCAGCAGAGGAGCTTTTAGAGCTAAAGGAGTTGTCACTGCATCTTTCCGTAATGTaGCAATGTTACTGCCCCTCC +
Preference number: 2 (lower is better)
Translates to: NAAPNSAEELLELKELSLHLSVM*QCYCPS
Trigger: GGAGGGGCAGTAACATTGTCACATTACGGAAAGATG...CAGTGACAACTCCTTTAGCTCTAAAAGCTCCTCTGCTGAGTTTGGAGCTGCGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp TACCTTGGCATTGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGTTAAGTTGCCTCCCCCAATaGATCCTGGGCCTCTGCTTT +
Preference number: 2 (lower is better)
Translates to: YLGIGVIGTLGGKFFFWLSCLPQ*ILGLCF
Trigger: AAAGCAGAGGCCCAGGATGCATTGGGGGAGGCAACT...TAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGTTAGCACCTTATTTCTCTGGTCGCTGGTGTaGCCCACTGCCTTTCAGGAA +
Preference number: 2 (lower is better)
Translates to: WSYRHFGRQVLFLVSTLFLWSLV*PTAFQE
Trigger: TTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAG...AAATAAGGTGCTAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR-3UTR CCA 90 bp TACCTTGGCATTGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGTTAACAGTGGCAAGTATCTaGGCAAGCACAGGGTGCAGG +
Preference number: 2 (lower is better)
Translates to: YLGIGVIGTLGGKFFFWLTVASI*ASTGCR
Trigger: CCTGCACCCTGTGCTTGCCCAGATACTTGCCACTGT...TAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp GAATACCTTGGCATTGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGCTTTGTTGGCCTCTGTaGTGGCCAGCATCTTTCCGT +
Preference number: 2 (lower is better)
Translates to: EYLGIGVIGTLGGKFFFWLCWPL*WPASFR
Trigger: ACGGAAAGATGCTGGCCACCACAGAGGCCAACAAAG...CCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTATTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 90 bp CATGATCAACTGTTATTTGTGACAGTTCAGATGACACTCTTGGATTaGATGGAAGGGGCTGTTTGCAGCCATGGGCCTTGTTTGGGTGCA +
Preference number: 2 (lower is better)
Translates to: HDQLLFVTVQMTLLD*MEGAVCSHGPCLGA
Trigger: TGCACCCAAACAAGGCCCATGGCTGCAAACAGCCCCTTCCATCAAATCCAAGAGTGTCATCTGAACTGTCACAAATAACAGTTGATCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR GCA 90 bp ACCTCTCCACTGTCAAGCTGGAACTGGACATCACTCAGGTGTGGATTATTGACCCCAGATGACTCCATGTaGTCTGTATTTTCTAGCTGT +
Preference number: 2 (lower is better)
Translates to: TSPLSSWNWTSLRCGLLTPDDSM*SVFSSC
Trigger: ACAGCTAGAAAATACAGAGCACATGGAGTCATCTGG...GGTCAATAATCCACACCTGAGTGATGTCCAGTTCCAGCTTGACAGTGGAGAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp TACCTTGGCATTGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGTTAATCACAGAGAACTGCTaGGCTGTTTCCAGCATGGTC +
Preference number: 2 (lower is better)
Translates to: YLGIGVIGTLGGKFFFWLITENC*AVSSMV
Trigger: GACCATGCTGGAAACAGCCCAGCAGTTCTCTGTGAT...TAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CCA 90 bp CACCTTATTTGTAACTCCGGGACTTTGGAAGCTGAGACTTGGGACTTCCAAAATAATAGGCTGTGTGTGTaGCATGATCACAGAGAACTG +
Preference number: 2 (lower is better)
Translates to: HLICNSGTLEAETWDFQNNRLCV*HDHREL
Trigger: CAGTTCTCTGTGATCATGCCACACACACAGCCTATT...ATTTTGGAAGTCCCAAGTCTCAGCTTCCAAAGTCCCGGAGTTACAAATAAGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR-3UTR CCA 90 bp TACCTTGGCATTGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGTTACGAATACCTTGGCATTaGAGTTATAGGCACTTTGGG +
Preference number: 2 (lower is better)
Translates to: YLGIGVIGTLGGKFFFWLRIPWH*SYRHFG
Trigger: CCCAAAGTGCCTATAACTCCAATGCCAAGGTATTCG...TAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR TCA 90 bp TACCTTGGCATTGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGTTATTCAACATCAATGACTaGAAACAGTTCAGAGGACCT +
Preference number: 2 (lower is better)
Translates to: YLGIGVIGTLGGKFFFWLFNIND*KQFRGP
Trigger: AGGTCCTCTGAACTGTTTTCAGTCATTGATGTTGAA...TAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp GCAGCCGGATCTTGGGGCTGTGGCTCACAGGAAGGCTaGTCTGGGAAGCAGGTGGCCGCCGTGGACTCGGCT +
Preference number: 3 (lower is better)
Translates to: AAGSWGCGSQEG*SGKQVAAVDSA
Trigger: AGCCGAGTCCACGGCGGCCACCTGCTTCCCAGAGCAGCCTTCCTGTGAGCCACAGCCCCAAGATCCGGCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTaGTCTGCCATGGCGGCTGGGCTGGTTTCAATGCTG +
Preference number: 3 (lower is better)
Translates to: WASTGCRPPVGV*SAMAAGLVSML
Trigger: CAGCATTGAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp GCTGTGGCTCACAGGAAGGCTGCTCTGGGAAGCAGGTaGCCGCCGTGGACTCGGCTCTCCTTGCTTGGGCAG +
Preference number: 3 (lower is better)
Translates to: AVAHRKAALGSR*PPWTRLSLLGQ
Trigger: CTGCCCAAGCAAGGAGAGCCGAGTCCACGGCGGCCACCTGCTTCCCAGAGCAGCCTTCCTGTGAGCCACAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp CGGATCTTGGGGCTGTGGCTCACAGGAAGGCTGCTCTaGGAAGCAGGTGGCCGCCGTGGACTCGGCTCTCCT +
Preference number: 3 (lower is better)
Translates to: RILGLWLTGRLL*EAGGRRGLGSP
Trigger: AGGAGAGCCGAGTCCACGGCGGCCACCTGCTTCCCAGAGCAGCCTTCCTGTGAGCCACAGCCCCAAGATCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp GTCCAACCCTGTGGGTACGCCCCGACTCCCGGGCTGTaGGCTAGAGCTCAGCCCTTCCACTGCCAAGTCCAC +
Preference number: 3 (lower is better)
Translates to: VQPCGYAPTPGL*ARAQPFHCQVH
Trigger: GTGGACTTGGCAGTGGAAGGGCTGAGCTCTAGCCCACAGCCCGGGAGTCGGGGCGTACCCACAGGGTTGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp CCTCCAGGACCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAAAGGTCCTGAAGGGCTaGACGCTCCCTCTGGCTGGA +
Preference number: 3 (lower is better)
Translates to: PPGPDCWDCLWSGGRSAPKVLKG*TLPLAG
Trigger: TCCAGCCAGAGGGAGCGTCAAGCCCTTCAGGACCTT...TGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp CAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTaGGCTGGTTTCAATGCTGAGAAGGCTGGACCCAGT +
Preference number: 3 (lower is better)
Translates to: QAARRCLVCHGG*AGFNAEKAGPS
Trigger: ACTGGGTCCAGCCTTCTCAGCATTGAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp CTCTGGCTGGAGGACAGCAGCCGGATCTTGGGGCTGTaGCTCACAGGAAGGCTGCTCTGGGAAGCAGGTGGC +
Preference number: 3 (lower is better)
Translates to: LWLEDSSRILGL*LTGRLLWEAGG
Trigger: GCCACCTGCTTCCCAGAGCAGCCTTCCTGTGAGCCACAGCCCCAAGATCCGGCTGCTGTCCTCCAGCCAGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp GACGCTCCCTCTGGCTGGAGGACAGCAGCCGGATCTTaGGGCTGTGGCTCACAGGAAGGCTGCTCTGGGAAG +
Preference number: 3 (lower is better)
Translates to: DAPSGWRTAAGS*GCGSQEGCSGK
Trigger: CTTCCCAGAGCAGCCTTCCTGTGAGCCACAGCCCCAAGATCCGGCTGCTGTCCTCCAGCCAGAGGGAGCGTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp ACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTGATGGAAGGGGCTGTTaGCAGCCATGGGCCTTGTTT +
Preference number: 3 (lower is better)
Translates to: TGCRPPVGVWSAMAAGLVDGRGC*QPWALF
Trigger: AAACAAGGCCCATGGCTGCAAACAGCCCCTTCCATC...AACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp CTGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCGGCATTGGGACACAATaGGAGGAAACAGTCCCACTG +
Preference number: 3 (lower is better)
Translates to: LGKHRVQAARRCLVCHGGGIGTQ*EETVPL
Trigger: CAGTGGGACTGTTTCCTCCAATTGTGTCCCAATGCC...GCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR GCA 72 bp TGCCTCCCCCAATGCATCCTGGGCCTCTGCTTTCCCTaGCCAGTCTGGGCACTGGTCCTGCAGTGGAGTGGA +
Preference number: 3 (lower is better)
Translates to: CLPQCILGLCFP*PVWALVLQWSG
Trigger: TCCACTCCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCCCAGGATGCATTGGGGGAGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp GCTGCAGAAGCTGGGGTCGTCAGTTGCCTCCCCCAATaGATCCTGGGCCTCTGCTTTCCCTGCCCAGTCTGG +
Preference number: 3 (lower is better)
Translates to: AAEAGVVSCLPQ*ILGLCFPCPVW
Trigger: CCAGACTGGGCAGGGAAAGCAGAGGCCCAGGATGCATTGGGGGAGGCAACTGACGACCCCAGCTTCTGCAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp GGCAGTCATCACTGTGCAAAGCCTCCAGGACCTGACTaGTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCT +
Preference number: 3 (lower is better)
Translates to: GSHHCAKPPGPD*WDCLWSGGRSA
Trigger: AGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGCACAGTGATGACTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp TGGGAAGCAGGTGGCCGCCGTGGACTCGGCTCTCCTTaGTTGGGCAGCTCCAATGGTAGCTGGGGTTCCTTG +
Preference number: 3 (lower is better)
Translates to: WEAGGRRGLGSP*LGSSNGSWGSL
Trigger: CAAGGAACCCCAGCTACCATTGGAGCTGCCCAAGCAAGGAGAGCCGAGTCCACGGCGGCCACCTGCTTCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp AGCACTCTTTCCCCCTCCTGTGGCGGCTGCAGAAGCTaGGGTCGTCAGTTGCCTCCCCCAATGCATCCTGGG +
Preference number: 3 (lower is better)
Translates to: STLSPSCGGCRS*GRQLPPPMHPG
Trigger: CCCAGGATGCATTGGGGGAGGCAACTGACGACCCCAGCTTCTGCAGCCGCCACAGGAGGGGGAAAGAGTGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGCAACCTTGAAGGGTaGCAGGTCTCAGTGGTAGAT +
Preference number: 3 (lower is better)
Translates to: WASTGCRPPVGVWSAMAAGNLEG*QVSVVD
Trigger: ATCTACCACTGAGACCTGCAACCCTTCAAGGTTGCC...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 72 bp AGGATCCTGGGCCCTGGGGCTCAGGGGCTCGGGTACTaGCTGTGTGAGGTCAATGGGTGGAGACTTTGCTGG +
Preference number: 3 (lower is better)
Translates to: RILGPGAQGLGY*LCEVNGWRLCW
Trigger: CCAGCAAAGTCTCCACCCATTGACCTCACACAGTCAGTACCCGAGCCCCTGAGCCCCAGGGCCCAGGATCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 72 bp GAGTGGCAGTCATCACTGTGCAAAGCCTCCAGGACCTaGCTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTC +
Preference number: 3 (lower is better)
Translates to: EWQSSLCKASRT*LLGLLVVRGPV
Trigger: GACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGCACAGTGATGACTGCCACTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp AGCGCAGACTGGTTTCCCAGCTGTCCTTCCTCCCCGTaGTGTAGCCCGGCCTCTCTCTTCAGTGGGCTTTGG +
Preference number: 3 (lower is better)
Translates to: SADWFPSCPSSP*CSPASLFSGLW
Trigger: CCAAAGCCCACTGAAGAGAGAGGCCGGGCTACAGCACGGGGAGGAAGGACAGCTGGGAAACCAGTCTGCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp CACTGTGCAAAGCCTCCAGGACCTGACTGCTGGGACTaGTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCA +
Preference number: 3 (lower is better)
Translates to: HCAKPPGPDCWD*LWSGGRSAPDS
Trigger: TGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGCACAGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp GCAAAGCCTCCAGGACCTGACTGCTGGGACTGCTTGTaGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTGGT +
Preference number: 3 (lower is better)
Translates to: AKPPGPDCWDCL*SGGRSAPDSSG
Trigger: ACCACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp AGTCATCACTGTGCAAAGCCTCCAGGACCTGACTGCTaGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCA +
Preference number: 3 (lower is better)
Translates to: SHHCAKPPGPDC*DCLWSGGRSAP
Trigger: TGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGCACAGTGATGACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp AAGCAGGTGGCCGCCGTGGACTCGGCTCTCCTTGCTTaGGCAGCTCCAATGGTAGCTGGGGTTCCTTGGAAG +
Preference number: 3 (lower is better)
Translates to: KQVAAVDSALLA*AAPMVAGVPWK
Trigger: CTTCCAAGGAACCCCAGCTACCATTGGAGCTGCCCAAGCAAGGAGAGCCGAGTCCACGGCGGCCACCTGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTATAGGGCAGCTGTGCTaGGGTGTGCTGGACACAGAG +
Preference number: 3 (lower is better)
Translates to: GRWCGPLPFRNTQDGDPGIGQLC*GVLDTE
Trigger: CTCTGTGTCCAGCACACCCAAGCACAGCTGCCCTAT...ACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTATGACACTCTTGGATTaGATGGAAGGGGCTGTTTGC +
Preference number: 3 (lower is better)
Translates to: WASTGCRPPVGVWSAMAAMTLLD*MEGAVC
Trigger: GCAAACAGCCCCTTCCATCAAATCCAAGAGTGTCAT...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 72 bp CCAGTCGTCCCACAGAGCCTCTGGAGAGCCAGCCAGTaGGGACCGTTCCTGAGACTCTCTCAGCGTACCACA +
Preference number: 3 (lower is better)
Translates to: PVVPQSLWRASQ*GPFLRLSQRTT
Trigger: TGTGGTACGCTGAGAGAGTCTCAGGAACGGTCCTCACTGGCTGGCTCTCCAGAGGCTCTGTGGGACGACTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 72 bp TCCTTTCGGGCTGCAGCAGTGGTGAAGGTGATGCACTaGGCGTCCAGGATGTCCGACAGCTTGCCCATGGCC +
Preference number: 3 (lower is better)
Translates to: SFRAAAVVKVMH*ASRMSDSLPMA
Trigger: GGCCATGGGCAAGCTGTCGGACATCCTGGACGCTCAGTGCATCACCTTCACCACTGCTGCAGCCCGAAAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp GGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTaGCTTTCAGGAACACACAGGATGGGGACCCTGGTT +
Preference number: 3 (lower is better)
Translates to: GSGLALVAGVAH*LSGTHRMGTLV
Trigger: AACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp GCCAGGGAAGGCTCAGAAACTGCACCGTCTTCCCCATaGGGGTTAGTGCTCCCATCTGGGTCTGCTGCTCTC +
Preference number: 3 (lower is better)
Translates to: AREGSETAPSSP*GLVLPSGSAAL
Trigger: GAGAGCAGCAGACCCAGATGGGAGCACTAACCCGCATGGGGAAGACGGTGCAGTTTCTGAGCCTTCCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp GCTGCAGGAGTGTGGAGTAGGTGCCTGGGCCATGTCTaGCTGCGTCTCCCTGACATGGTCACTCTGCTCTTC +
Preference number: 3 (lower is better)
Translates to: AAGVWSRCLGHV*LRLPDMVTLLF
Trigger: GAAGAGCAGAGTGACCATGTCAGGGAGACGCAGGCAGACATGGCCCAGGCACCTACTCCACACTCCTGCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp ATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTaGAGCTCGGCCAGCTCCACAGGCTGGTACCTCAGG +
Preference number: 3 (lower is better)
Translates to: MATGMPFCFSSA*SSASSTGWYLR
Trigger: CCTGAGGTACCAGCCTGTGGAGCTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp CCAGGATGTCCGACAGCTTGCCCATGGCCACAGGGATaGCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCA +
Preference number: 3 (lower is better)
Translates to: PGCPTACPWPQG*HSVSAQPAARP
Trigger: TGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGCAAGCTGTCGGACATCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp CTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATaGGGACCCTGGTTGGGCCAAAGGGGGAAAACTGGC +
Preference number: 3 (lower is better)
Translates to: LVWPTAFQEHTG*GPWLGQRGKTG
Trigger: GCCAGTTTTCCCCCTTTGGCCCAACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp CCTGAGACTCTCTCAGCGTACCACAGCTTCCTCGGATaGGGGTGGTACCAAGTCCCGGGGAGTGGCAGTCAT +
Preference number: 3 (lower is better)
Translates to: PETLSAYHSFLG*GWYQVPGSGSH
Trigger: ATGACTGCCACTCCCCGGGACTTGGTACCACCCCCATCCGAGGAAGCTGTGGTACGCTGAGAGAGTCTCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GTTTTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGGAAGGCTGGACCCAGTaGCCTGTCCCAGAATATAGG +
Preference number: 3 (lower is better)
Translates to: VFWLQSSQGMSLQPSADWEGWTQ*PVPEYR
Trigger: CCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTC...CCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GCCCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGTCCACTTCCTCCTCATaGTCTACCCACACCGACCTC +
Preference number: 3 (lower is better)
Translates to: AHGHRDAILFQLSLQLGQSTSSS*STHTDL
Trigger: GAGGTCGGTGTGGGTAGACAATGAGGAGGAAGTGGA...CTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GGAGTGGCAGGCACCAGCCAAGAGGTGTCTGTAGCACTGTCCTCATCCAGGCTGGGGGCTGCTGTTTCCTaGATGGGAAGCCACCTCATC +
Preference number: 3 (lower is better)
Translates to: GVAGTSQEVSVALSSSRLGAAVS*MGSHLI
Trigger: GATGAGGTGGCTTCCCATCAAGGAAACAGCAGCCCC...CAGCCTGGATGAGGACAGTGCTACAGACACCTCTTGGCTGGTGCCTGCCACTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 72 bp GGCCTGTCTGGCTTCCGAGTTCTGGTACTCAGCATTTaGGCCACAGGTGGGGCCTCTGGAGACTGTCCTTCC +
Preference number: 3 (lower is better)
Translates to: GLSGFRVLVLSI*ATGGASGDCPS
Trigger: GGAAGGACAGTCTCCAGAGGCCCCACCTGTGGCTCAAATGCTGAGTACCAGAACTCGGAAGCCAGACAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp CCTACGACATACTGCAGAGGCCTGACTTATGCTAGGTaGCCAGGTCCTCTGGCAGGTCTACTGGGTGGAGGC +
Preference number: 3 (lower is better)
Translates to: PTTYCRGLTYAR*PGPLAGLLGGG
Trigger: GCCTCCACCCAGTAGACCTGCCAGAGGACCTGGGCACCTAGCATAAGTCAGGCCTCTGCAGTATGTCGTAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp TGGTTTTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTaGAGCCCAGCGCAGACTGGTTTCCCAGCTGTCCTT +
Preference number: 3 (lower is better)
Translates to: WFSGCRAARGCL*SPAQTGFPAVL
Trigger: AAGGACAGCTGGGAAACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAAAACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp TCCCTGCCCAGTCTGGGCACTGGTCCTGCAGTGGAGTaGAATGTCCTTCTTGTTCCCAGCTGGCTAGTGCCT +
Preference number: 3 (lower is better)
Translates to: SLPSLGTGPAVE*NVLLVPSWLVP
Trigger: AGGCACTAGCCAGCTGGGAACAAGAAGGACATTCCACTCCACTGCAGGACCAGTGCCCAGACTGGGCAGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp TCCTGGGCCTCTGCTTTCCCTGCCCAGTCTGGGCACTaGTCCTGCAGTGGAGTGGAATGTCCTTCTTGTTCC +
Preference number: 3 (lower is better)
Translates to: SWASAFPAQSGH*SCSGVECPSCS
Trigger: GGAACAAGAAGGACATTCCACTCCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCCCAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp TGTGACACAAGGCTGCAGGAGTGTGGAGTAGGTGCCTaGGCCATGTCTGCCTGCGTCTCCCTGACATGGTCA +
Preference number: 3 (lower is better)
Translates to: CDTRLQECGVGA*AMSACVSLTWS
Trigger: TGACCATGTCAGGGAGACGCAGGCAGACATGGCCCAGGCACCTACTCCACACTCCTGCAGCCTTGTGTCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp GTGTCTGTAGCACTGTCCTCATCCAGGCTGGTTTTCTaGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCC +
Preference number: 3 (lower is better)
Translates to: VSVALSSSRLVF*LQSSQGMSLQP
Trigger: GGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAAAACCAGCCTGGATGAGGACAGTGCTACAGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp ACTCTCTCAGCGTACCACAGCTTCCTCGGATGGGGGTaGTACCAAGTCCCGGGGAGTGGCAGTCATCACTGT +
Preference number: 3 (lower is better)
Translates to: TLSAYHSFLGWG*YQVPGSGSHHC
Trigger: ACAGTGATGACTGCCACTCCCCGGGACTTGGTACCACCCCCATCCGAGGAAGCTGTGGTACGCTGAGAGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp GTAGATGCCTGGCGACAAGGTAGTTCTGCGGGTATCTaGGGGGACTGGACCTCATCCTCAGAGTCCGACTCC +
Preference number: 3 (lower is better)
Translates to: VDAWRQGSSAGI*GDWTSSSESDS
Trigger: GGAGTCGGACTCTGAGGATGAGGTCCAGTCCCCCCAGATACCCGCAGAACTACCTTGTCGCCAGGCATCTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp ACAGAGGTAGCCATGGATTCCTGGGAGGCTGGGAGCTaGGCGTCACCATCAGGATGTGAAGGCTCCCCAGTT +
Preference number: 3 (lower is better)
Translates to: TEVAMDSWEAGS*ASPSGCEGSPV
Trigger: AACTGGGGAGCCTTCACATCCTGATGGTGACGCCCAGCTCCCAGCCTCCCAGGAATCCATGGCTACCTCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGTCCACTTCCTCCTCATaGTCTACCCACACCGACCTC +
Preference number: 3 (lower is better)
Translates to: VLLWSLVWPTAFQEHTGWSTSSS*STHTDL
Trigger: GAGGTCGGTGTGGGTAGACAATGAGGAGGAAGTGGA...CCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp TTAGTGCTCCCATCTGGGTCTGCTGCTCTCCCCCACTGGAGAAGCTTCCTCTGCTTGCAGCCATGGGCCTaGTTTGGGTGCAAAGGCAAG +
Preference number: 3 (lower is better)
Translates to: LVLPSGSAALPHWRSFLCLQPWA*FGCKGK
Trigger: CTTGCCTTTGCACCCAAACAAGGCCCATGGCTGCAA...GCAGAGGAAGCTTCTCCAGTGGGGGAGAGCAGCAGACCCAGATGGGAGCACTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GCCCATGGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCTGCAGCTCGGCCAGAGGGGGACAAATGACTaGTGTGGTATAGGTGAAGCC +
Preference number: 3 (lower is better)
Translates to: AHGHRDAILFQLSLQLGQRGTND*CGIGEA
Trigger: GGCTTCACCTATACCACACAAGTCATTTGTCCCCCT...CTGGCCGAGCTGCAGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp TCCTCGGATGGGGGTGGTACCAAGTCCCGGGGAGTGGCAGTCATCACTGTGCAAGAAACTGACTCTGTCTaGGTGTGCTCCAGCTCCTCA +
Preference number: 3 (lower is better)
Translates to: SSDGGGTKSRGVAVITVQETDSV*VCSSSS
Trigger: TGAGGAGCTGGAGCACACCAAGACAGAGTCAGTTTC...TTGCACAGTGATGACTGCCACTCCCCGGGACTTGGTACCACCCCCATCCGAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp GTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTaGCCCACTGCCTTTCAGGAACACACAGGATGGGGA +
Preference number: 3 (lower is better)
Translates to: VKKAQVLLWSLV*PTAFQEHTGWG
Trigger: TCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp TGCACTGAGCGTCCAGGATGTCCGACAGCTTGCCCATaGCCACAGGGATGCCATTCTGTTTCAGCTCAGCCT +
Preference number: 3 (lower is better)
Translates to: CTERPGCPTACP*PQGCHSVSAQP
Trigger: AGGCTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGGGCAAGCTGTCGGACATCCTGGACGCTCAGTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp GCGGCCTCCGAGCTCACATCACTCAGCAGAGCACGCTaGGTCAGATCCCCGTCCTCTTCAGAAGAAAAGCTT +
Preference number: 3 (lower is better)
Translates to: AASELTSLSRAR*VRSPSSSEEKL
Trigger: AAGCTTTTCTTCTGAAGAGGACGGGGATCTGACCCAGCGTGCTCTGCTGAGTGATGTGAGCTCGGAGGCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp ACCTTAGGGCCAGGGAACGCAGATCCGGAACCAGGCTaGGAGGCATGTCAGTGTCTGCCATGTAGAGGTAGT +
Preference number: 3 (lower is better)
Translates to: TLGPGNADPEPG*EACQCLPCRGS
Trigger: ACTACCTCTACATGGCAGACACTGACATGCCTCCCAGCCTGGTTCCGGATCTGCGTTCCCTGGCCCTAAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp TCTTCTGGCTGTTCTCCCTCTAAGTCCACCACGGCGGGCACTTGTTCACACAGCGAAGGCTGGACCCAGTaGCCTGTCCCAGAATATAGG +
Preference number: 3 (lower is better)
Translates to: SSGCSPSKSTTAGTCSHSEGWTQ*PVPEYR
Trigger: CCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTC...GCTGTGTGAACAAGTGCCCGCCGTGGTGGACTTAGAGGGAGAACAGCCAGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp CCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGTATGACACTCTTGGATTaGATGGAAGGGGCTGTTTGC +
Preference number: 3 (lower is better)
Translates to: PDCWDCLWSGGRSAPDSSMTLLD*MEGAVC
Trigger: GCAAACAGCCCCTTCCATCAAATCCAAGAGTGTCAT...ACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCTTAGAGCTAAAGGAGTaGTCACTGCCGTCCACAGAG +
Preference number: 3 (lower is better)
Translates to: EASEEGSGLALVAGVAHCLELKE*SLPSTE
Trigger: CTCTGTGGACGGCAGTGACAACTCCTTTAGCTCTAA...GCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 72 bp TCTGGTCTGCCATGGCGGCTGGGCTGGTTTCAATGCTaGGAAGGCTGGACCCAGTTGCCTGTCCCAGAATAT +
Preference number: 3 (lower is better)
Translates to: SGLPWRLGWFQC*EGWTQLPVPEY
Trigger: ATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAAACCAGCCCAGCCGCCATGGCAGACCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 72 bp CTGTGTCTGCGGCCTGGATTGCGGCCTGTGATGCAGTaGCCCCGACCTCCTCATCCTTGTCTTCATCTGAAT +
Preference number: 3 (lower is better)
Translates to: LCLRPGLRPVMQ*PRPPHPCLHLN
Trigger: ATTCAGATGAAGACAAGGATGAGGAGGTCGGGGTCACTGCATCACAGGCCGCAATCCAGGCCGCAGACACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 72 bp CTCTGGCAGGTCTACTGGGTGGAGGCCTGTCATTTCTaGTCCTTTTTCTTTCGGCCTGAGGGCTGCCGTCTC +
Preference number: 3 (lower is better)
Translates to: LWQVYWVEACHF*SFFFRPEGCRL
Trigger: GAGACGGCAGCCCTCAGGCCGAAAGAAAAAGGATCAGAAATGACAGGCCTCCACCCAGTAGACCTGCCAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp GGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGTaGTTGGGTGTGCTGGACACAGAGAGGCAAGTGAAG +
Preference number: 3 (lower is better)
Translates to: GPSCLSQNIGQL*LGVLDTERQVK
Trigger: CTTCACTTGCCTCTCTGTGTCCAGCACACCCAAGCACAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp GTTCCGCTTCCCTTCAGGCAGCCGTGCTCGCCAGCCTaGAGGTTCCAATTCTTCCTTAGAAATCTTGCTGGC +
Preference number: 3 (lower is better)
Translates to: VPLPFRQPCSPA*RFQFFLRNLAG
Trigger: GCCAGCAAGATTTCTAAGGAAGAATTGGAACCTGCAGGCTGGCGAGCACGGCTGCCTGAAGGGAAGCGGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp ACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTaGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACAC +
Preference number: 3 (lower is better)
Translates to: TERQVKKAQVLL*SLVWPTAFQEH
Trigger: GTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp CTCGGCTCTCCTTGCTTGGGCAGCTCCAATGGTAGCTaGGGTTCCTTGGAAGGGCATTGGGACACAATTGGA +
Preference number: 3 (lower is better)
Translates to: LGSPCLGSSNGS*GSLEGHWDTIG
Trigger: TCCAATTGTGTCCCAATGCCCTTCCAAGGAACCCCAGCTACCATTGGAGCTGCCCAAGCAAGGAGAGCCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp CTGCCGTCTCTTGTGTTTGAGTTTCTCCTTTCGGGCTGCAGCAGTGGTGAAGGTATAGGGCAGCTGTGCTaGGGTGTGCTGGACACAGAG +
Preference number: 3 (lower is better)
Translates to: LPSLVFEFLLSGCSSGEGIGQLC*GVLDTE
Trigger: CTCTGTGTCCAGCACACCCAAGCACAGCTGCCCTAT...ACCTTCACCACTGCTGCAGCCCGAAAGGAGAAACTCAAACACAAGAGACGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGTGCTTGGGTTTGGAGACAGTGATCTaGGGGATGCCACCCTGGAAA +
Preference number: 3 (lower is better)
Translates to: EKAGPSCLSQNIGQLCLGLETVI*GMPPWK
Trigger: TTTCCAGGGTGGCATCCCCAAGATCACTGTCTCCAA...ACCCAAGCACAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp AGTGATCTTGGGGATGCCACCCTGGAAATGCTACTGTGTGACTGGGACACTGAGTATGGGGCTACTTTGTaGGCCTCTGTGGTGGCCAGC +
Preference number: 3 (lower is better)
Translates to: SDLGDATLEMLLCDWDTEYGATL*ASVVAS
Trigger: GCTGGCCACCACAGAGGCCAACAAAGTAGCCCCATA...CTCAGTGTCCCAGTCACACAGTAGCATTTCCAGGGTGGCATCCCCAAGATCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp AACGCAGATCCGGAACCAGGCTGGGAGGCATGTCAGTGTCTGCCATGTAGAGGTCAATGGGTGGAGACTTaGCTGGGGAAATCAGGATGC +
Preference number: 3 (lower is better)
Translates to: NADPEPGWEACQCLPCRGQWVET*LGKSGC
Trigger: GCATCCTGATTTCCCCAGCAAAGTCTCCACCCATTG...ACCTCTACATGGCAGACACTGACATGCCTCCCAGCCTGGTTCCGGATCTGCGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp CTGCCGTCTCTTGTGTTTGAGTTTCTCCTTTCGGGCTGCAGCAGTGGTGAAGGTGGTAGCTGGGGTTCCTaGGAAGGGCATTGGGACACA +
Preference number: 3 (lower is better)
Translates to: LPSLVFEFLLSGCSSGEGGSWGS*EGHWDT
Trigger: TGTGTCCCAATGCCCTTCCAAGGAACCCCAGCTACC...ACCTTCACCACTGCTGCAGCCCGAAAGGAGAAACTCAAACACAAGAGACGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR TCA 72 bp TCTAAGTCCACCACGGCGGGCACTTGTTCACACAGCTaGACAAGGTCACTCACACCAAACCTTAGGGCCAGG +
Preference number: 3 (lower is better)
Translates to: SKSTTAGTCSHS*TRSLTPNLRAR
Trigger: CCTGGCCCTAAGGTTTGGTGTGAGTGACCTTGTTCAGCTGTGTGAACAAGTGCCCGCCGTGGTGGACTTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR GCA 72 bp TGGGCTGGTTTCAATGCTGAGAAGGCTGGACCCAGTTaGCTGTCCCAGAATATAGGGCAGCTGTGCTTGGGT +
Preference number: 3 (lower is better)
Translates to: WAGFNAEKAGPS*LSQNIGQLCLG
Trigger: ACCCAAGCACAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAAACCAGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp CTGCCGTCTCTTGTGTTTGAGTTTCTCCTTTCGGGCTaGAGCAGTGGTGAAGGTGATGCACTGAGCGTCCAG +
Preference number: 3 (lower is better)
Translates to: LPSLVFEFLLSG*SSGEGDALSVQ
Trigger: CTGGACGCTCAGTGCATCACCTTCACCACTGCTGCAGCCCGAAAGGAGAAACTCAAACACAAGAGACGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp GGGAAATCAGGATGCCCCTATTTCTGTGTCCCGCTATaGGGCTACTTTGTTGGCCTCTGTGGTGGCCAGCAT +
Preference number: 3 (lower is better)
Translates to: GKSGCPYFCVPL*GYFVGLCGGQH
Trigger: ATGCTGGCCACCACAGAGGCCAACAAAGTAGCCCCATAGCGGGACACAGAAATAGGGGCATCCTGATTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp CTTCCGAGTTCTGGTACTCAGCATTTGAGCCACAGGTaGGGCCTCTGGAGACTGTCCTTCCTCCTCATTCCA +
Preference number: 3 (lower is better)
Translates to: LPSSGTQHLSHR*GLWRLSFLLIP
Trigger: TGGAATGAGGAGGAAGGACAGTCTCCAGAGGCCCCACCTGTGGCTCAAATGCTGAGTACCAGAACTCGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp CTGGAAGGCCTGGAAGTCTGCTTCAGTCTCCTGCAGTaGTTCTGTGTATTGCCTGGGACTTGGTGTCTCTGG +
Preference number: 3 (lower is better)
Translates to: LEGLEVCFSLLQ*FCVLPGTWCLW
Trigger: CCAGAGACACCAAGTCCCAGGCAATACACAGAACCACTGCAGGAGACTGAAGCAGACTTCCAGGCCTTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR-3UTR CAA 90 bp GGAGTGGCAGGCACCAGCCAAGAGGTGTCTGTAGCACTGTCCTCATCCAGGCTGGGAGTTATAGGCACTTaGGGAGGCAAGTTCTTTTTC +
Preference number: 3 (lower is better)
Translates to: GVAGTSQEVSVALSSSRLGVIGT*GGKFFF
Trigger: GAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCC...CAGCCTGGATGAGGACAGTGCTACAGACACCTCTTGGCTGGTGCCTGCCACTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 72 bp GCCCCTCCTCTGCTTAGTTGGTGTAGTTGGAGACAGTaGTCTTGGGGATGCCACCCTGGAAATGCTACTGTG +
Preference number: 3 (lower is better)
Translates to: APPLLSWCSWRQ*SWGCHPGNATV
Trigger: CACAGTAGCATTTCCAGGGTGGCATCCCCAAGATCACTGTCTCCAACTACACCAACTAAGCAGAGGAGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp TTTGCCTGGAAGGCCTGGAAGTCTGCTTCAGTCTCCTaGAGTGGTTCTGTGTATTGCCTGGGACTTGGTGTC +
Preference number: 3 (lower is better)
Translates to: FAWKAWKSASVS*SGSVYCLGLGV
Trigger: GACACCAAGTCCCAGGCAATACACAGAACCACTGCAGGAGACTGAAGCAGACTTCCAGGCCTTCCAGGCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR GCA 72 bp CATGTCAGTGTCTGCCATGTAGAGGTAGTTCAGAAATaGATGGGCGGCCTCCGAGCTCACATCACTCAGCAG +
Preference number: 3 (lower is better)
Translates to: HVSVCHVEVVQK*MGGLRAHITQQ
Trigger: CTGCTGAGTGATGTGAGCTCGGAGGCCGCCCATGCATTTCTGAACTACCTCTACATGGCAGACACTGACATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp CCAGGAAAGTCTCTGCTCGGCTTTCACAGTCCTCACTaGTCTCTTCTGGCTGTTCTCCCTCTAAGTCCACCA +
Preference number: 3 (lower is better)
Translates to: PGKSLLGFHSPH*SLLAVLPLSPP
Trigger: TGGTGGACTTAGAGGGAGAACAGCCAGAAGAGACCAGTGAGGACTGTGAAAGCCGAGCAGAGACTTTCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp CCCCTATTTCTGTGTCCCGCTATGGGGCTACTTTGTTaGCCTCTGTGGTGGCCAGCATCTTTCCGTAATGTG +
Preference number: 3 (lower is better)
Translates to: PLFLCPAMGLLC*PLWWPASFRNV
Trigger: CACATTACGGAAAGATGCTGGCCACCACAGAGGCCAACAAAGTAGCCCCATAGCGGGACACAGAAATAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp TGTGTATTGCCTGGGACTTGGTGTCTCTGGCCTGTCTaGCTTCCGAGTTCTGGTACTCAGCATTTGAGCCAC +
Preference number: 3 (lower is better)
Translates to: CVLPGTWCLWPV*LPSSGTQHLSH
Trigger: GTGGCTCAAATGCTGAGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACCAAGTCCCAGGCAATACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR CCA 72 bp CAGTGGTTCTGTGTATTGCCTGGGACTTGGTGTCTCTaGCCTGTCTGGCTTCCGAGTTCTGGTACTCAGCAT +
Preference number: 3 (lower is better)
Translates to: QWFCVLPGTWCL*PVWLPSSGTQH
Trigger: ATGCTGAGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACCAAGTCCCAGGCAATACACAGAACCACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR CCA 72 bp GGCTCCTGTCATTTTTCCGTGTTTGCCTGGAAGGCCTaGAAGTCTGCTTCAGTCTCCTGCAGTGGTTCTGTG +
Preference number: 3 (lower is better)
Translates to: GSCHFSVFAWKA*KSASVSCSGSV
Trigger: CACAGAACCACTGCAGGAGACTGAAGCAGACTTCCAGGCCTTCCAGGCAAACACGGAAAAATGACAGGAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR CCA 72 bp TCTACCTGTGGTCTCAGAGTCTTGGGTTACCAACTGTaGGGGACACACCGGGGGTCTCTTCTTGCGACTTTT +
Preference number: 3 (lower is better)
Translates to: STCGLRVLGYQL*GTHRGSLLATF
Trigger: AAAAGTCGCAAGAAGAGACCCCCGGTGTGTCCCCCACAGTTGGTAACCCAAGACTCTGAGACCACAGGTAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp CTTGCTTGGGCAGCTCCAATGGTAGCTGGGGTTCCTTaGAAGGGCATTGGGACACAATTGGAGGAAACAGTC +
Preference number: 3 (lower is better)
Translates to: LAWAAPMVAGVP*KGIGTQLEETV
Trigger: GACTGTTTCCTCCAATTGTGTCCCAATGCCCTTCCAAGGAACCCCAGCTACCATTGGAGCTGCCCAAGCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR GCA 72 bp ATCATCACTGTCCCCAACTTCTACCACATCATCAGCTaGAGGCAGATTTGGCAGGCATGGTCTAGGTGCGGA +
Preference number: 3 (lower is better)
Translates to: IITVPNFYHIIS*RQIWQAWSRCG
Trigger: TCCGCACCTAGACCATGCCTGCCAAATCTGCCTGCAGCTGATGATGTGGTAGAAGTTGGGGACAGTGATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp CCCAACTTCTACCACATCATCAGCTGCAGGCAGATTTaGCAGGCATGGTCTAGGTGCGGAAGATTTCTGGGA +
Preference number: 3 (lower is better)
Translates to: PNFYHIISCRQI*QAWSRCGRFLG
Trigger: TCCCAGAAATCTTCCGCACCTAGACCATGCCTGCCAAATCTGCCTGCAGCTGATGATGTGGTAGAAGTTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp GAAGCTGGGCAACACGATCTTCAATCTGTCTACCTGTaGTCTCAGAGTCTTGGGTTACCAACTGTGGGGGAC +
Preference number: 3 (lower is better)
Translates to: EAGQHDLQSVYL*SQSLGLPTVGD
Trigger: GTCCCCCACAGTTGGTAACCCAAGACTCTGAGACCACAGGTAGACAGATTGAAGATCGTGTTGCCCAGCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp AGGTCAATGGGTGGAGACTTTGCTGGGGAAATCAGGATGCCCCTATTTCTGTGTAGCCATGGGCCTTGTTaGGGTGCAAAGGCAAGCACT +
Preference number: 3 (lower is better)
Translates to: RSMGGDFAGEIRMPLFLCSHGPC*GAKAST
Trigger: AGTGCTTGCCTTTGCACCCAAACAAGGCCCATGGCT...ACACAGAAATAGGGGCATCCTGATTTCCCCAGCAAAGTCTCCACCCATTGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GCAGTGACCCCGACCTCCTCATCCTTGTCTTCATCTGAATACTCAAACGCAGCTCAATGGGTGGAGACTTaGCTGGGGAAATCAGGATGC +
Preference number: 3 (lower is better)
Translates to: AVTPTSSSLSSSEYSNAAQWVET*LGKSGC
Trigger: GCATCCTGATTTCCCCAGCAAAGTCTCCACCCATTG...AGCTGCGTTTGAGTATTCAGATGAAGACAAGGATGAGGAGGTCGGGGTCACTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp TCCTTGTCTTCATCTGAATACTCAAACGCAGCTCCAAACTCAGCAGAGGAGCTTCACCACGGCGGGCACTaGTTCACACAGCTGAACAAG +
Preference number: 3 (lower is better)
Translates to: SLSSSEYSNAAPNSAEELHHGGH*FTQLNK
Trigger: CTTGTTCAGCTGTGTGAACAAGTGCCCGCCGTGGTG...AAGCTCCTCTGCTGAGTTTGGAGCTGCGTTTGAGTATTCAGATGAAGACAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GCTTTTAGAGCTAAAGGAGTTGTCACTGCCGTCCACAGAGGTAGCCATGGATTCGAAACTGACTCTGTCTaGGTGTGCTCCAGCTCCTCA +
Preference number: 3 (lower is better)
Translates to: AFRAKGVVTAVHRGSHGFETDSV*VCSSSS
Trigger: TGAGGAGCTGGAGCACACCAAGACAGAGTCAGTTTC...GAATCCATGGCTACCTCTGTGGACGGCAGTGACAACTCCTTTAGCTCTAAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 72 bp GGTCCGCTCCAGATTCAAGTGGTCAATTGGAATTGGTaGGAGAGGCTCATTCCAACAGTAGTCACCCATGGG +
Preference number: 3 (lower is better)
Translates to: GPLQIQVVNWNW*ERLIPTVVTHG
Trigger: CCCATGGGTGACTACTGTTGGAATGAGCCTCTCTCACCAATTCCAATTGACCACTTGAATCTGGAGCGGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR TCA 72 bp TGCAGTGACCCCGACCTCCTCATCCTTGTCTTCATCTaGATACTCAAACGCAGCTCCAAACTCAGCAGAGGA +
Preference number: 3 (lower is better)
Translates to: CSDPDLLILVFI*ILKRSSKLSRG
Trigger: TCCTCTGCTGAGTTTGGAGCTGCGTTTGAGTATTCAGATGAAGACAAGGATGAGGAGGTCGGGGTCACTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp GTAATAGGCTGTGTGTGTGGCATGATCACAGAGAACTaGTGGGCTGTTTCCAGCATGGTCCTGCGTTCTAAG +
Preference number: 3 (lower is better)
Translates to: VIGCVCGMITEN*WAVSSMVLRSK
Trigger: CTTAGAACGCAGGACCATGCTGGAAACAGCCCAGCAGTTCTCTGTGATCATGCCACACACACAGCCTATTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp TCCATGTGCTCTGTATTTTCTAGCTGTCTGTTACTCTaGACACCTGCCAGGGAAGGCTCAGAAACTGCACCG +
Preference number: 3 (lower is better)
Translates to: SMCSVFSSCLLL*TPAREGSETAP
Trigger: CGGTGCAGTTTCTGAGCCTTCCCTGGCAGGTGTCCAGAGTAACAGACAGCTAGAAAATACAGAGCACATGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp ACTCTTGGATTTGATGGAAGGGGCTGTTTGCAGCCATaGGCCTTGTTTGGGTGCAAAGGCAAGCACTCTTTC +
Preference number: 3 (lower is better)
Translates to: TLGFDGRGCLQP*ALFGCKGKHSF
Trigger: GAAAGAGTGCTTGCCTTTGCACCCAAACAAGGCCCATGGCTGCAAACAGCCCCTTCCATCAAATCCAAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp TGTCCCGCTATGGGGCTACTTTGTTGGCCTCTGTGGTaGCCAGCATCTTTCCGTAATGTGACAATGTTACTG +
Preference number: 3 (lower is better)
Translates to: CPAMGLLCWPLW*PASFRNVTMLL
Trigger: CAGTAACATTGTCACATTACGGAAAGATGCTGGCCACCACAGAGGCCAACAAAGTAGCCCCATAGCGGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp CTGTGTCCCGCTATGGGGCTACTTTGTTGGCCTCTGTaGTGGCCAGCATCTTTCCGTAATGTGACAATGTTA +
Preference number: 3 (lower is better)
Translates to: LCPAMGLLCWPL*WPASFRNVTML
Trigger: TAACATTGTCACATTACGGAAAGATGCTGGCCACCACAGAGGCCAACAAAGTAGCCCCATAGCGGGACACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp AGATTTGGCAGGCATGGTCTAGGTGCGGAAGATTTCTaGGACCACCTGGTAAAATCAGGGCCAGGACATGAT +
Preference number: 3 (lower is better)
Translates to: RFGRHGLGAEDF*DHLVKSGPGHD
Trigger: ATCATGTCCTGGCCCTGATTTTACCAGGTGGTCCCAGAAATCTTCCGCACCTAGACCATGCCTGCCAAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp GTTGAACATGGCTCCTGTCATTTTTCCGTGTTTGCCTaGAAGGCCTGGAAGTCTGCTTCAGTCTCCTGCAGT +
Preference number: 3 (lower is better)
Translates to: VEHGSCHFSVFA*KAWKSASVSCS
Trigger: ACTGCAGGAGACTGAAGCAGACTTCCAGGCCTTCCAGGCAAACACGGAAAAATGACAGGAGCCATGTTCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR CCA 72 bp AGACGGAGCCTCAGGCTTATTGACTTTCCTCCTCCTTaGCTCCCTTTTGGTGGTGACTCCTTTCCGTTTCAA +
Preference number: 3 (lower is better)
Translates to: RRSLRLIDFPPP*LPFGGDSFPFQ
Trigger: TTGAAACGGAAAGGAGTCACCACCAAAAGGGAGCCAAGGAGGAGGAAAGTCAATAAGCCTGAGGCTCCGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp GGGGTGCAAGATAGTTCTGCTTCCTCTGACAGAAGCTaGGCAACACGATCTTCAATCTGTCTACCTGTGGTC +
Preference number: 3 (lower is better)
Translates to: GVQDSSASSDRS*ATRSSICLPVV
Trigger: GACCACAGGTAGACAGATTGAAGATCGTGTTGCCCAGCTTCTGTCAGAGGAAGCAGAACTATCTTGCACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CCA 72 bp TTTCTGGTTAGCACCTTTTGGTGTCTCTGGCCTGTCTaGCTTCCGAGTTCTGGTACTCAGCATTTGAGCCAC +
Preference number: 3 (lower is better)
Translates to: FLVSTFWCLWPV*LPSSGTQHLSH
Trigger: GTGGCTCAAATGCTGAGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACCAAAAGGTGCTAACCAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GGGCTAAATTCTGGAACTTTCCTTCCTTCTGGGGAATCTTTAGAAACTGACTCTTGGACTCGGCTCTCCTaGCTTGGGCAGCTCCAATGG +
Preference number: 3 (lower is better)
Translates to: GLNSGTFLPSGESLETDSWTRLS*LGQLQW
Trigger: CCATTGGAGCTGCCCAAGCAAGGAGAGCCGAGTCCA...AGAGTCAGTTTCTAAAGATTCCCCAGAAGGAAGGAAAGTTCCAGAATTTAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR TCA 72 bp GGAGGCCTGTCATTTCTGATCCTTTTTCTTTCGGCCTaGGGGCTGCCGTCTCTTGTGTTTGAGTTTCTCCTT +
Preference number: 3 (lower is better)
Translates to: GGLSFLILFLSA*GLPSLVFEFLL
Trigger: AAGGAGAAACTCAAACACAAGAGACGGCAGCCCTCAGGCCGAAAGAAAAAGGATCAGAAATGACAGGCCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp TCATTTTTCCGTGTTTGCCTGGAAGGCCTGGAAGTCTaGTTCAGTCTCCTGCAGTGGTTCTGTGTATTGCCT +
Preference number: 3 (lower is better)
Translates to: SFFRVCLEGLEV*FSLLQWFCVLP
Trigger: AGGCAATACACAGAACCACTGCAGGAGACTGAAGCAGACTTCCAGGCCTTCCAGGCAAACACGGAAAAATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR CCA 72 bp CCTGCAGTGGAGTGGAATGTCCTTCTTGTTCCCAGCTaGCTAGTGCCTCTTCTTTTTCTAACCCAGATGACT +
Preference number: 3 (lower is better)
Translates to: PAVEWNVLLVPS*LVPLLFLTQMT
Trigger: AGTCATCTGGGTTAGAAAAAGAAGAGGCACTAGCCAGCTGGGAACAAGAAGGACATTCCACTCCACTGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp AATGACTTGTGTGGTATAGGTGAAGCCATGACTGGCTaGGACTTCCATCCACAGAAGACTGTGACACAAGGC +
Preference number: 3 (lower is better)
Translates to: NDLCGIGEAMTG*DFHPQKTVTQG
Trigger: GCCTTGTGTCACAGTCTTCTGTGGATGGAAGTCCCAGCCAGTCATGGCTTCACCTATACCACACAAGTCATT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp ATAGGCTGTGTGTGTGGCATGATCACAGAGAACTGCTaGGCTGTTTCCAGCATGGTCCTGCGTTCTAAGTTA +
Preference number: 3 (lower is better)
Translates to: IGCVCGMITENC*AVSSMVLRSKL
Trigger: TAACTTAGAACGCAGGACCATGCTGGAAACAGCCCAGCAGTTCTCTGTGATCATGCCACACACACAGCCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp GTGTACTGGAAAATCTCCTTCAGTTTTAGAACCATCTaGCGTTTGGGCAGAGCACGGACTCCAAACCTGTCC +
Preference number: 3 (lower is better)
Translates to: VYWKISFSFRTI*RLGRARTPNLS
Trigger: GGACAGGTTTGGAGTCCGTGCTCTGCCCAAACGCCAGATGGTTCTAAAACTGAAGGAGATTTTCCAGTACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp GGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTaGTTAGCACCTTTTGGTGTCTCTGGCCTGTCTGGC +
Preference number: 3 (lower is better)
Translates to: GVIGTLGGKFFF*LAPFGVSGLSG
Trigger: GCCAGACAGGCCAGAGACACCAAAAGGTGCTAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp AAGAAGTGGGCATCTCGCATAAAGAACAAACTTGTGTGCATAAAGCACCTCTCCCTCCTTGGCTCCCTTTaGGTGGTGACTCCTTTCCGT +
Preference number: 3 (lower is better)
Translates to: KKWASRIKNKLVCIKHLSLLGSL*VVTPFR
Trigger: ACGGAAAGGAGTCACCACCAAAAGGGAGCCAAGGAG...GGAGAGGTGCTTTATGCACACAAGTTTGTTCTTTATGCGAGATGCCCACTTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR TCA 72 bp TGGACCTCATCCTCAGAGTCCGACTCCAGAGTCTGGTaGGTGTACTGGAAAATCTCCTTCAGTTTTAGAACC +
Preference number: 3 (lower is better)
Translates to: WTSSSESDSRVW*VYWKISFSFRT
Trigger: GGTTCTAAAACTGAAGGAGATTTTCCAGTACACTCACCAGACTCTGGAGTCGGACTCTGAGGATGAGGTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp TCTGGGGAATCTTTAGAAACTGACTCTGTCTTGGTGTaGTCCAGCTCCTCATCTGAGTCCAGTAACAGGATG +
Preference number: 3 (lower is better)
Translates to: SGESLETDSVLV*SSSSSESSNRM
Trigger: CATCCTGTTACTGGACTCAGATGAGGAGCTGGAGCACACCAAGACAGAGTCAGTTTCTAAAGATTCCCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp TCATCTGACGGAATCCTGGTCTTAAGGCTTTTGATTTaGGTCTGTGATGAGCAATCACGACTCCTGCTGACC +
Preference number: 3 (lower is better)
Translates to: SSDGILVLRLLI*VCDEQSRLLLT
Trigger: GGTCAGCAGGAGTCGTGATTGCTCATCACAGACCCAAATCAAAAGCCTTAAGACCAGGATTCCGTCAGATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp CAGCACCGGGGTCTCCATGATCGAATACCTTGGCATTaGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTT +
Preference number: 3 (lower is better)
Translates to: QHRGLHDRIPWH*SYRHFGRQVLF
Trigger: AAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTATTCGATCATGGAGACCCCGGTGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp TTTCTTCAGCACCGGGGTCTCCATGATCGAATACCTTaGCATTGGAGTTATAGGCACTTTGGGAGGCAAGTT +
Preference number: 3 (lower is better)
Translates to: FLQHRGLHDRIP*HWSYRHFGRQV
Trigger: AACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTATTCGATCATGGAGACCCCGGTGCTGAAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CCA 72 bp CAAGTTCTTTTTCTGGTTAGCACCTTTTGGTGTCTCTaGCCTGTCTGGCTTCCGAGTTCTGGTACTCAGCAT +
Preference number: 3 (lower is better)
Translates to: QVLFLVSTFWCL*PVWLPSSGTQH
Trigger: ATGCTGAGTACCAGAACTCGGAAGCCAGACAGGCCAGAGACACCAAAAGGTGCTAACCAGAAAAAGAACTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GGGCTAAATTCTGGAACTTTCCTTCCTTCTGGGGAATCTTTAGAAACTGACTCTTTGCAGCCATGGGCCTaGTTTGGGTGCAAAGGCAAG +
Preference number: 3 (lower is better)
Translates to: GLNSGTFLPSGESLETDSLQPWA*FGCKGK
Trigger: CTTGCCTTTGCACCCAAACAAGGCCCATGGCTGCAA...AGAGTCAGTTTCTAAAGATTCCCCAGAAGGAAGGAAAGTTCCAGAATTTAGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GCTTTTAGAGCTAAAGGAGTTGTCACTGCCGTCCACAGAGGTAGCCATGGATTCCTGGTCTTAAGGCTTTaGATTTGGGTCTGTGATGAG +
Preference number: 3 (lower is better)
Translates to: AFRAKGVVTAVHRGSHGFLVLRL*IWVCDE
Trigger: CTCATCACAGACCCAAATCAAAAGCCTTAAGACCAG...GAATCCATGGCTACCTCTGTGGACGGCAGTGACAACTCCTTTAGCTCTAAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp GTGGGCATCTCGCATAAAGAACAAACTTGTGTGCATAAAGCACCTCTCCACTGTTCTTCCTTAGAAATCTaGCTGGCAAGAAGTGGTGGG +
Preference number: 3 (lower is better)
Translates to: VGISHKEQTCVHKAPLHCSSLEI*LARSGG
Trigger: CCCACCACTTCTTGCCAGCAAGATTTCTAAGGAAGA...ACAGTGGAGAGGTGCTTTATGCACACAAGTTTGTTCTTTATGCGAGATGCCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR TCA 72 bp GCCTGCGTCTCCCTGACATGGTCACTCTGCTCTTCATaGTCAACTGTTATTTGTGACAGTTCAGATGACACT +
Preference number: 3 (lower is better)
Translates to: ACVSLTWSLCSS*STVICDSSDDT
Trigger: AGTGTCATCTGAACTGTCACAAATAACAGTTGATCATGAAGAGCAGAGTGACCATGTCAGGGAGACGCAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp AAGAAGTGGGCATCTCGCATAAAGAACAAACTTGTGTaGATAAAGCACCTCTCCACTGTCAAGCTGGAACTG +
Preference number: 3 (lower is better)
Translates to: KKWASRIKNKLV*IKHLSTVKLEL
Trigger: CAGTTCCAGCTTGACAGTGGAGAGGTGCTTTATGCACACAAGTTTGTTCTTTATGCGAGATGCCCACTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR-3UTR CAA 90 bp TACCTTGGCATTGGAGTTATAGGCACTTTGGGAGGCAAGTTCTTTTTCTGGTTATTCCTTGGAAGGGCATaGGGACACAATTGGAGGAAA +
Preference number: 3 (lower is better)
Translates to: YLGIGVIGTLGGKFFFWLFLGRA*GHNWRK
Trigger: TTTCCTCCAATTGTGTCCCAATGCCCTTCCAAGGAA...TAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR TCA 72 bp CCGGCCTCTCTCTTCAGTGGGCTTTGGAAATGTTCATaGTCTTCTTCAACATCAATGACTGAAAACAGTTCA +
Preference number: 3 (lower is better)
Translates to: PASLFSGLWKCS*SSSTSMTENSS
Trigger: TGAACTGTTTTCAGTCATTGATGTTGAAGAAGATCATGAACATTTCCAAAGCCCACTGAAGAGAGAGGCCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR GCA 72 bp AGTGCCTCTTCTTTTTCTAACCCAGATGACTCCATGTaGTCTGTATTTTCTAGCTGTCTGTTACTCTGGACA +
Preference number: 3 (lower is better)
Translates to: SASSFSNPDDSM*SVFSSCLLLWT
Trigger: TGTCCAGAGTAACAGACAGCTAGAAAATACAGAGCACATGGAGTCATCTGGGTTAGAAAAAGAAGAGGCACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
CDS-3UTR CCA 90 bp CTGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCAAATGCAGAGGATCCTaGGCCCTGGGGCTCAGGGGC +
Preference number: 4 (lower is better)
Translates to: LGKHRVQAARRCLVCHGGKCRGS*ALGLRG
Trigger: GCCCCTGAGCCCCAGGGCCCAGGATCCTCTGCATTT...GCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGGTAGCCATGGATTCCTaGGAGGCTGGGAGCTGGGCG +
Preference number: 4 (lower is better)
Translates to: ASTGCRPPVGVWSAMAAGVAMDS*EAGSWA
Trigger: CGCCCAGCTCCCAGCCTCCCAGGAATCCATGGCTAC...CCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGCTCCCATCTGGGTCTaGTGCTCTCCCCCACTGGAG +
Preference number: 4 (lower is better)
Translates to: WASTGCRPPVGVWSAMAAAPIWV*CSPPLE
Trigger: CTCCAGTGGGGGAGAGCAGCAGACCCAGATGGGAGC...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp AAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGCCTCTGCTTTCCCTaGCCAGTCTGGGCACTGGTC +
Preference number: 4 (lower is better)
Translates to: KHRVQAARRCLVCHGGWAGLCFP*PVWALV
Trigger: GACCAGTGCCCAGACTGGGCAGGGAAAGCAGAGGCC...AGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTCTCAGGACCTGCCTGTaGAGGGCAGGCTTAGAGCGG +
Preference number: 4 (lower is better)
Translates to: WASTGCRPPVGVWSAMAALRTCL*RAGLER
Trigger: CCGCTCTAAGCCTGCCCTGCACAGGCAGGTCCTGAG...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGTTTCCCTGCCCAGTCTaGGCACTGGTCCTGCAGTGG +
Preference number: 4 (lower is better)
Translates to: ASTGCRPPVGVWSAMAAGFPCPV*ALVLQW
Trigger: CCACTGCAGGACCAGTGCCCAGACTGGGCAGGGAAA...CCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTCAGGGGCTCGGGTACTaGCTGTGTGAGGTCAATGGG +
Preference number: 4 (lower is better)
Translates to: WASTGCRPPVGVWSAMAAQGLGY*LCEVNG
Trigger: CCCATTGACCTCACACAGTCAGTACCCGAGCCCCTG...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp AAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGAGCGGGGGCACAACTaGACAGTGCTCCACCTCAGA +
Preference number: 4 (lower is better)
Translates to: KHRVQAARRCLVCHGGWAERGHN*TVLHLR
Trigger: TCTGAGGTGGAGCACTGTCCAGTTGTGCCCCCGCTC...AGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp CTGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCGCTGCTCTCCCCCACTaGAGAAGCTTCCTCTGCGTA +
Preference number: 4 (lower is better)
Translates to: LGKHRVQAARRCLVCHGGAALPH*RSFLCV
Trigger: TACGCAGAGGAAGCTTCTCCAGTGGGGGAGAGCAGC...GCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCTCCCCCAATGCATCCTaGGCCTCTGCTTTCCCTGCC +
Preference number: 4 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFSPNAS*ASAFPA
Trigger: GGCAGGGAAAGCAGAGGCCCAGGATGCATTGGGGGA...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp ACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTCACAGCTTCCTCGGATaGGGGTGGTACCAAGTCCCG +
Preference number: 4 (lower is better)
Translates to: TGCRPPVGVWSAMAAGLVHSFLG*GWYQVP
Trigger: CGGGACTTGGTACCACCCCCATCCGAGGAAGCTGTG...AACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp CTGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCAGTTGCCTCCCCCAATaGATCCTGGGCCTCTGCTTT +
Preference number: 4 (lower is better)
Translates to: LGKHRVQAARRCLVCHGGSCLPQ*ILGLCF
Trigger: AAAGCAGAGGCCCAGGATGCATTGGGGGAGGCAACT...GCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp AAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTAGTTCTGCGGGTATCTaGGGGGACTGGACCTCATCC +
Preference number: 4 (lower is better)
Translates to: KHRVQAARRCLVCHGGWASSAGI*GDWTSS
Trigger: GGATGAGGTCCAGTCCCCCCAGATACCCGCAGAACT...AGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTCCGACAGCTTGCCCATaGCCACAGGGATGCCATTCT +
Preference number: 4 (lower is better)
Translates to: WASTGCRPPVGVWSAMAAPTACP*PQGCHS
Trigger: AGAATGGCATCCCTGTGGCCATGGGCAAGCTGTCGG...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCTTGCAGAACCAGCTCTaGGACTCTGGGTTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFLQNQL*DSGFGG
Trigger: CCCTCCAAACCCAGAGTCTCAGAGCTGGTTCTGCAA...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp GCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGATCCACAGAAGACTGTaGCACAAGGCTGCAGGAGTG +
Preference number: 4 (lower is better)
Translates to: ASTGCRPPVGVWSAMAAGIHRRL*HKAAGV
Trigger: CACTCCTGCAGCCTTGTGTCACAGTCTTCTGTGGAT...CCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp CTGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGTAGTTGGAGACAGTaGTCTTGGGGATGCCACCCT +
Preference number: 4 (lower is better)
Translates to: LGKHRVQAARRCLVCHGGCSWRQ*SWGCHP
Trigger: AGGGTGGCATCCCCAAGATCACTGTCTCCAACTACA...GCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp ACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTGGGCTGCTGTTTCCTTaGTGGGAAGCCACCTCATCA +
Preference number: 4 (lower is better)
Translates to: TGCRPPVGVWSAMAAGLVGLLFP*WEATSS
Trigger: TGATGAGGTGGCTTCCCATCAAGGAAACAGCAGCCC...AACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp CTGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCGCCGTCTCTTGTGTTTaGGTTTCTCCTTTCGGGCTG +
Preference number: 4 (lower is better)
Translates to: LGKHRVQAARRCLVCHGGAVSCV*VSPFGL
Trigger: CAGCCCGAAAGGAGAAACTCAAACACAAGAGACGGC...GCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCGGTTTCCCACATATTaGGCAATCAGGGATCCGAGG +
Preference number: 4 (lower is better)
Translates to: ASTGCRPPVGVWSAMAAGRFPTY*AIRDPR
Trigger: CCTCGGATCCCTGATTGCCCAATATGTGGGAAACCG...CCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000156542.8
CDS-3UTR CCA 90 bp CTGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCGACTTTCCTCCTCCTTaGCTCCCTTTTGGTGGTGAC +
Preference number: 4 (lower is better)
Translates to: LGKHRVQAARRCLVCHGGDFPPP*LPFGGD
Trigger: GTCACCACCAAAAGGGAGCCAAGGAGGAGGAAAGTC...GCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCAGCTGCAGGCAGATTTaGCAGGCATGGTCTAGGTGC +
Preference number: 4 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFSCRQI*QAWSRC
Trigger: GCACCTAGACCATGCCTGCCAAATCTGCCTGCAGCT...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCGCACACTGCTTCAAGTaGCTGATTCGGCTCTTGGTG +
Preference number: 4 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFAHCFK*LIRLLV
Trigger: CACCAAGAGCCGAATCAGTCACTTGAAGCAGTGTGC...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000156542.8
CDS-3UTR TCA 90 bp AAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTCTTGTGTGGTATAGGTaGAGCCATGACTGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: KHRVQAARRCLVCHGGWALVWYR*SHDWLG
Trigger: TCCCAGCCAGTCATGGCTTCACCTATACCACACAAG...AGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTCCATGGCCACAGGGATaGCATTCTGTTTCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: WASTGCRPPVGVWSAMAAPWPQG*HSVSAQ
Trigger: CTGAGCTGAAACAGAATGGCATCCCTGTGGCCATGG...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp ACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTGTAGCTGGGGTTCCTTaGAAGGGCATTGGGACACAA +
Preference number: 4 (lower is better)
Translates to: TGCRPPVGVWSAMAAGLVVAGVP*KGIGTQ
Trigger: TTGTGTCCCAATGCCCTTCCAAGGAACCCCAGCTAC...AACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp AAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGCTGTTTGCAGCCATaGGCCTTGTTTGGGTGCAAA +
Preference number: 4 (lower is better)
Translates to: KHRVQAARRCLVCHGGWAGCLQP*ALFGCK
Trigger: TTTGCACCCAAACAAGGCCCATGGCTGCAAACAGCC...AGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp GGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTGTAGCCTCACAGCCTaGAGCAGGAGTTGGGGACCC +
Preference number: 4 (lower is better)
Translates to: GRWCGPLPFRNTQDGDPGCSLTA*SRSWGP
Trigger: GGGTCCCCAACTCCTGCTTCAGGCTGTGAGGCTACA...ACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000156542.8
CDS-3UTR CCA 90 bp GTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTAGCAGGTGGCCGCCGTaGACTCGGCTCTCCTTGCTT +
Preference number: 4 (lower is better)
Translates to: VAGVAHCLSGTHRMGTLVSRWPP*TRLSLL
Trigger: AAGCAAGGAGAGCCGAGTCCACGGCGGCCACCTGCT...AACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCGACGCTCCCTCTGGCTaGAGGACAGCAGCCGGATCT +
Preference number: 4 (lower is better)
Translates to: EASEEGSGLALVAGVAHCDAPSG*RTAAGS
Trigger: AGATCCGGCTGCTGTCCTCCAGCCAGAGGGAGCGTC...GCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp CTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTGGGCCTCAGCAGAGCACGCTaGGTCAGATCCCCGTCCTCT +
Preference number: 4 (lower is better)
Translates to: LVWPTAFQEHTGWGPWLGLSRAR*VRSPSS
Trigger: AGAGGACGGGGATCTGACCCAGCGTGCTCTGCTGAG...GCCCAACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
CDS-3UTR CCA 90 bp GTTTTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGCTCAGCAGAGCACGCTaGGTCAGATCCCCGTCCTCT +
Preference number: 4 (lower is better)
Translates to: VFWLQSSQGMSLQPSADWLSRAR*VRSPSS
Trigger: AGAGGACGGGGATCTGACCCAGCGTGCTCTGCTGAG...CCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
CDS-3UTR CCA 90 bp GTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTTCTTTCCCCCTCCTGTaGCGGCTGCAGAAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: VAGVAHCLSGTHRMGTLVSFPLL*RLQKLG
Trigger: CCCCAGCTTCTGCAGCCGCCACAGGAGGGGGAAAGA...AACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp AAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTTTGGGGATGCCACCCTaGAAATGCTACTGTGTGACT +
Preference number: 4 (lower is better)
Translates to: KHRVQAARRCLVCHGGWALGMPP*KCYCVT
Trigger: AGTCACACAGTAGCATTTCCAGGGTGGCATCCCCAA...AGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCCTGGGGCTAAATTCTaGAACTTTCCTTCCTTCTGG +
Preference number: 4 (lower is better)
Translates to: ASTGCRPPVGVWSAMAAGPGAKF*NFPSFW
Trigger: CCAGAAGGAAGGAAAGTTCCAGAATTTAGCCCCAGG...CCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCATCACAGAGAACTGCTaGGCTGTTTCCAGCATGGTC +
Preference number: 4 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFITENC*AVSSMV
Trigger: GACCATGCTGGAAACAGCCCAGCAGTTCTCTGTGAT...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
3UTR CAA 72 bp GAAGCAGGTGGCCGCCGTGGACTCGGCTCTCCTTGCTaGGGCAGCTCCAATGGTAGCTGGGGTTCCTTGGAA +
Preference number: 4 (lower is better)
Translates to: EAGGRRGLGSPC*GSSNGSWGSLE
Trigger: TTCCAAGGAACCCCAGCTACCATTGGAGCTGCCCAAGCAAGGAGAGCCGAGTCCACGGCGGCCACCTGCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
CDS-3UTR GCA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTAACTGCTTCATCCGTTaGAGAACCAGCTCTGAGACT +
Preference number: 4 (lower is better)
Translates to: WASTGCRPPVGVWSAMAANCFIR*RTSSET
Trigger: AGTCTCAGAGCTGGTTCTGCAACGGATGAAGCAGTT...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp CTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGTGGGTACCTGAGGGCTaGCATCCACCTCTGGCTGAG +
Preference number: 4 (lower is better)
Translates to: LALVAGVAHCLSGTHRMGWVPEG*HPPLAE
Trigger: CTCAGCCAGAGGTGGATGGCAGCCCTCAGGTACCCA...CCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000156542.8
CDS-3UTR GCA 90 bp ACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCGGCTCACAGGAAGGCTaGTCTGGGAAGCAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: TERQVKKAQVLLWSLVWPGSQEG*SGKQVA
Trigger: GGCCACCTGCTTCCCAGAGCAGCCTTCCTGTGAGCC...GGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp AAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTATGATCACAGAGAACTaGTGGGCTGTTTCCAGCATG +
Preference number: 4 (lower is better)
Translates to: KHRVQAARRCLVCHGGWAMITEN*WAVSSM
Trigger: CATGCTGGAAACAGCCCAGCAGTTCTCTGTGATCAT...AGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCGGATGTCCGACAGCTTaGCCATGGCCACAGGGATGC +
Preference number: 4 (lower is better)
Translates to: EASEEGSGLALVAGVAHCGCPTA*PWPQGC
Trigger: GCATCCCTGTGGCCATGGGCAAGCTGTCGGACATCC...GCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCGCTCTGGGAAGCAGGTaGCCGCCGTGGACTCGGCTC +
Preference number: 4 (lower is better)
Translates to: VQRGQRSWSAGKYARVLVALGSR*PPWTRL
Trigger: GAGCCGAGTCCACGGCGGCCACCTGCTTCCCAGAGC...GACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp CCTCCAGGACCTGACTGCTGGGACTGCTTGTGGTCAGGGGGCCGGTCCGCTCCACTGTCAAGCTGGAACTaGACATCACTCAGGTGTGGA +
Preference number: 4 (lower is better)
Translates to: PPGPDCWDCLWSGGRSAPLSSWN*TSLRCG
Trigger: TCCACACCTGAGTGATGTCCAGTTCCAGCTTGACAG...TGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
CDS-3UTR CCA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCGGTGCGGAAGATTTCTaGGACCACCTGGTAAAATCA +
Preference number: 4 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFGAEDF*DHLVKS
Trigger: TGATTTTACCAGGTGGTCCCAGAAATCTTCCGCACC...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
3UTR CAA 72 bp TGTGCAAAGCCTCCAGGACCTGACTGCTGGGACTGCTaGTGGTCAGGGGGCCGGTCCGCTCCAGATTCAAGT +
Preference number: 4 (lower is better)
Translates to: CAKPPGPDCWDC*WSGGRSAPDSS
Trigger: ACTTGAATCTGGAGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTTGCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
CDS-3UTR TCA 90 bp ACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCAATCACGACTCCTGCTaGCCCCTGGAGTGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: TERQVKKAQVLLWSLVWPNHDSC*PLEWQA
Trigger: TGCCTGCCACTCCAGGGGTCAGCAGGAGTCGTGATT...GGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp GGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTGTCACCATCAGGATGTaGAGGCTCCCCAGTTGGCAA +
Preference number: 4 (lower is better)
Translates to: GRWCGPLPFRNTQDGDPGVTIRM*RLPSWQ
Trigger: TTGCCAACTGGGGAGCCTTCACATCCTGATGGTGAC...ACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCATCCTTGTCTTCATCTaGATACTCAAACGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFILVFI*ILKRSS
Trigger: GGAGCTGCGTTTGAGTATTCAGATGAAGACAAGGAT...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp GTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTGTGAAGGTGATGCACTaGGCGTCCAGGATGTCCGAC +
Preference number: 4 (lower is better)
Translates to: VAGVAHCLSGTHRMGTLVVKVMH*ASRMSD
Trigger: GTCGGACATCCTGGACGCTCAGTGCATCACCTTCAC...AACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCGCTCAGCCCTTCCACTaGCAAGTCCACAAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: EASEEGSGLALVAGVAHCAQPFH*QVHKVL
Trigger: CAGGACCTTGTGGACTTGGCAGTGGAAGGGCTGAGC...GCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCTGTTTCAGCTCAGCCTaGAGCTCGGCCAGCTCCACA +
Preference number: 4 (lower is better)
Translates to: EASEEGSGLALVAGVAHCCFSSA*SSASST
Trigger: TGTGGAGCTGGCCGAGCTGCAGGCTGAGCTGAAACA...GCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GGAGTGGCAGGCACCAGCCAAGAGGTGTCTGTAGCACTGTCCTCATCCAGGCTGGATCCGGAACCAGGCTaGGAGGCATGTCAGTGTCTG +
Preference number: 4 (lower is better)
Translates to: GVAGTSQEVSVALSSSRLDPEPG*EACQCL
Trigger: CAGACACTGACATGCCTCCCAGCCTGGTTCCGGATC...CAGCCTGGATGAGGACAGTGCTACAGACACCTCTTGGCTGGTGCCTGCCACTCC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
CDS-3UTR CCA 90 bp CTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGGTTAGTGCTCCCATCTaGGTCTGCTGCTCTCCCCCA +
Preference number: 4 (lower is better)
Translates to: LALVAGVAHCLSGTHRMGVSAPI*VCCSPP
Trigger: TGGGGGAGAGCAGCAGACCCAGATGGGAGCACTAAC...CCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCTGCTGGGACTGCTTGTaGTCAGGGGGCCGGTCCGCT +
Preference number: 4 (lower is better)
Translates to: VQRGQRSWSAGKYARVLVCWDCL*SGGRSA
Trigger: AGCGGACCGGCCCCCTGACCACAAGCAGTCCCAGCA...GACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGCCAGGACCTGACTGCTaGGACTGCTTGTGGTCAGGG +
Preference number: 4 (lower is better)
Translates to: VLLWSLVWPTAFQEHTGWPGPDC*DCLWSG
Trigger: CCCTGACCACAAGCAGTCCCAGCAGTCAGGTCCTGG...CCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp AGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTTCCTCGGATGGGGGTaGTACCAAGTCCCGGGGAGT +
Preference number: 4 (lower is better)
Translates to: REASEEGSGLALVAGVAHFLGWG*YQVPGS
Trigger: ACTCCCCGGGACTTGGTACCACCCCCATCCGAGGAA...GTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp ACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCCACAGGTGGGGCCTCTaGAGACTGTCCTTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: TERQVKKAQVLLWSLVWPHRWGL*RLSFLL
Trigger: GAGGAGGAAGGACAGTCTCCAGAGGCCCCACCTGTG...GGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGGGCAAGTTCTTTTTCTaGTTAGCACCTTTTGGTGTC +
Preference number: 4 (lower is better)
Translates to: ASTGCRPPVGVWSAMAAGGKFFF*LAPFGV
Trigger: GACACCAAAAGGTGCTAACCAGAAAAAGAACTTGCC...CCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp GAGCGAGACAGAGCCATGGCCACCAACAGATCTTCAGACGGAGCCTCAGGCTTATGTAGCCTCACAGCCTaGAGCAGGAGTTGGGGACCC +
Preference number: 4 (lower is better)
Translates to: ERDRAMATNRSSDGASGLCSLTA*SRSWGP
Trigger: GGGTCCCCAACTCCTGCTTCAGGCTGTGAGGCTACA...TAAGCCTGAGGCTCCGTCTGAAGATCTGTTGGTGGCCATGGCTCTGTCTCGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
CDS-3UTR GCA 90 bp CTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTGGGCCAGGCGCTCAGGGTCTaGTCTCTTGAACTGCTTCAT +
Preference number: 4 (lower is better)
Translates to: LVWPTAFQEHTGWGPWLGQALRV*SLELLH
Trigger: ATGAAGCAGTTCAAGAGAGCAGACCCTGAGCGCCTG...GCCCAACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GGCGGCTGGGCTGGTTTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGGTTACTCTGGACACCTaGCAGGGAAGGCTCAGAAAC +
Preference number: 4 (lower is better)
Translates to: GGWAGFNAEKAGPSCLSQVTLDT*QGRLRN
Trigger: GTTTCTGAGCCTTCCCTGGCAGGTGTCCAGAGTAAC...CTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAAACCAGCCCAGCCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCGCCAGGGGATGTCTCTaGAGCCCAGCGCAGACTGGT +
Preference number: 4 (lower is better)
Translates to: VQRGQRSWSAGKYARVLVARGCL*SPAQTG
Trigger: ACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGC...GACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp CTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGGCTGGGAGTTGCCATTaGGAGCACTCTCTGGAACCA +
Preference number: 4 (lower is better)
Translates to: LALVAGVAHCLSGTHRMGAGSCH*EHSLEP
Trigger: TGGTTCCAGAGAGTGCTCCCAATGGCAACTCCCAGC...CCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGTTGGGTTACCAACTGTaGGGGACACACCGGGGGTCT +
Preference number: 4 (lower is better)
Translates to: VLLWSLVWPTAFQEHTGWLGYQL*GTHRGS
Trigger: AGACCCCCGGTGTGTCCCCCACAGTTGGTAACCCAA...CCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp CCTACTTGTAGGATGCTGGTGACAGTGGCAAGTATCTGGGCAAGCACAGGGTGCACAGGAAGGCTGCTCTaGGAAGCAGGTGGCCGCCGT +
Preference number: 4 (lower is better)
Translates to: PTCRMLVTVASIWASTGCTGRLL*EAGGRR
Trigger: ACGGCGGCCACCTGCTTCCCAGAGCAGCCTTCCTGT...GCACCCTGTGCTTGCCCAGATACTTGCCACTGTCACCAGCATCCTACAAGTAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGATCCGGAACCAGGCTaGGAGGCATGTCAGTGTCTG +
Preference number: 4 (lower is better)
Translates to: VLLWSLVWPTAFQEHTGWDPEPG*EACQCL
Trigger: CAGACACTGACATGCCTCCCAGCCTGGTTCCGGATC...CCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
CDS-3UTR CCA 90 bp CCTACTTGTAGGATGCTGGTGACAGTGGCAAGTATCTGGGCAAGCACAGGGTGCACTCCTGCTGACCCCTaGAGTGGCAGGCACCAGCCA +
Preference number: 4 (lower is better)
Translates to: PTCRMLVTVASIWASTGCTPADP*SGRHQP
Trigger: TGGCTGGTGCCTGCCACTCCAGGGGTCAGCAGGAGT...GCACCCTGTGCTTGCCCAGATACTTGCCACTGTCACCAGCATCCTACAAGTAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp AAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTACATTCATTGCTaGGAGGTTTTTCTGACACAT +
Preference number: 4 (lower is better)
Translates to: KHRVQAARRCLVCHGGWAGYIHC*EVFLTH
Trigger: ATGTGTCAGAAAAACCTCTCAGCAATGAATGTAACC...AGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp TTTTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGTGCACACTGCTTCAAGTaGCTGATTCGGCTCTTGGTG +
Preference number: 4 (lower is better)
Translates to: FSGCRAARGCLCSPAQTGAHCFK*LIRLLV
Trigger: CACCAAGAGCCGAATCAGTCACTTGAAGCAGTGTGC...ACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
CDS-3UTR TCA 90 bp GAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGTGCTTGGGTCTGCCTGCGTCTCCCTaGCATGGTCACTCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: EKAGPSCLSQNIGQLCLGLPASP*HGHSAL
Trigger: AAGAGCAGAGTGACCATGTCAGGGAGACGCAGGCAG...ACCCAAGCACAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp CTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGCCGGGGGTCTCTTCTTaGGACTTTTCTTCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: LALVAGVAHCLSGTHRMGPGVSS*DFSSLL
Trigger: GAGCAGAGAAGAAAAGTCGCAAGAAGAGACCCCCGG...CCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp AGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACCCGTGCTCGCCAGCCTaGAGGTTCCAATTCTTCCTT +
Preference number: 4 (lower is better)
Translates to: REASEEGSGLALVAGVAHPCSPA*RFQFFL
Trigger: AAGGAAGAATTGGAACCTGCAGGCTGGCGAGCACGG...GTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCTGCATCCTGGGCCTCTaGTTTCCCTGCCCAGTCTGG +
Preference number: 4 (lower is better)
Translates to: VQRGQRSWSAGKYARVLVCILGL*FPCPVW
Trigger: CCAGACTGGGCAGGGAAAGCAGAGGCCCAGGATGCA...GACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTATGGAAGGGGCTGTTTaGAGCCATGGGCCTTGTTTG +
Preference number: 4 (lower is better)
Translates to: VAGVAHCLSGTHRMGTLVMEGAV*SHGPCL
Trigger: CAAACAAGGCCCATGGCTGCAAACAGCCCCTTCCAT...AACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTCCTTTTTCACGAAATaGAGAGGATCCTGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: GRWCGPLPFRNTQDGDPGSFFTK*RGSWAL
Trigger: CAGGGCCCAGGATCCTCTGCATTTCGTGAAAAAGGA...ACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp CTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTGGGCTACCACATCATCAGCTaGAGGCAGATTTGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: LVWPTAFQEHTGWGPWLGYHIIS*RQIWQA
Trigger: TGCCTGCCAAATCTGCCTGCAGCTGATGATGTGGTA...GCCCAACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTCTCCACTGTCAAGCTaGAACTGGACATCACTCAGG +
Preference number: 4 (lower is better)
Translates to: GRWCGPLPFRNTQDGDPGSPLSS*NWTSLR
Trigger: CCTGAGTGATGTCCAGTTCCAGCTTGACAGTGGAGA...ACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
CDS-3UTR CCA 90 bp CCTACTTGTAGGATGCTGGTGACAGTGGCAAGTATCTGGGCAAGCACAGGGTGCGCCCAGTCTGGGCACTaGTCCTGCAGTGGAGTGGAA +
Preference number: 4 (lower is better)
Translates to: PTCRMLVTVASIWASTGCAQSGH*SCSGVE
Trigger: TTCCACTCCACTGCAGGACCAGTGCCCAGACTGGGC...GCACCCTGTGCTTGCCCAGATACTTGCCACTGTCACCAGCATCCTACAAGTAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTCTTTGTTGGCCTCTGTaGTGGCCAGCATCTTTCCGT +
Preference number: 4 (lower is better)
Translates to: VAGVAHCLSGTHRMGTLVLCWPL*WPASFR
Trigger: ACGGAAAGATGCTGGCCACCACAGAGGCCAACAAAG...AACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp ACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCGAACCATCTGGCGTTTaGGCAGAGCACGGACTCCAA +
Preference number: 4 (lower is better)
Translates to: TERQVKKAQVLLWSLVWPEPSGV*AEHGLQ
Trigger: TTGGAGTCCGTGCTCTGCCCAAACGCCAGATGGTTC...GGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
3UTR CAA 72 bp CTGGACACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTaGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAG +
Preference number: 4 (lower is better)
Translates to: LDTERQVKKAQV*LWSLVWPTAFQ
Trigger: CTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGTGTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 72 bp TGGCCTGTCTGGCTTCCGAGTTCTGGTACTCAGCATTaGAGCCACAGGTGGGGCCTCTGGAGACTGTCCTTC +
Preference number: 4 (lower is better)
Translates to: WPVWLPSSGTQH*SHRWGLWRLSF
Trigger: GAAGGACAGTCTCCAGAGGCCCCACCTGTGGCTCAAATGCTGAGTACCAGAACTCGGAAGCCAGACAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
CDS-3UTR TCA 90 bp GCTCTGAGTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTCAGGCTGTCATGGTGTaGGGATGCTTCCTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: ALSPKGTTELECRKVRSSQAVMV*GCFLPS
Trigger: AGAAGGGAGGAAGCATCCTCACACCATGACAGCCTG...ACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGACTCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp GGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTACTTGTTCACACAGCTaGACAAGGTCACTCACACCA +
Preference number: 4 (lower is better)
Translates to: GRWCGPLPFRNTQDGDPGTCSHS*TRSLTP
Trigger: TGGTGTGAGTGACCTTGTTCAGCTGTGTGAACAAGT...ACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGAGCGAGACAGAGCCATaGCCACCAACAGATCTTCAG +
Preference number: 4 (lower is better)
Translates to: VLLWSLVWPTAFQEHTGWSETEP*PPTDLQ
Trigger: CTGAAGATCTGTTGGTGGCCATGGCTCTGTCTCGCT...CCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTCTGTCAAGCTGGAACTaGACATCACTCAGGTGTGGA +
Preference number: 4 (lower is better)
Translates to: VAGVAHCLSGTHRMGTLVLSSWN*TSLRCG
Trigger: TCCACACCTGAGTGATGTCCAGTTCCAGCTTGACAG...AACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
CDS-3UTR CCA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCATACTGAATAAGAAGTaGGCATCTCGCATAAAGAAC +
Preference number: 4 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFILNKK*ASRIKN
Trigger: GTTCTTTATGCGAGATGCCCACTTCTTATTCAGTAT...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
CDS-3UTR CCA 90 bp CTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGTGTTGGCCTCTGTGGTaGCCAGCATCTTTCCGTAAT +
Preference number: 4 (lower is better)
Translates to: LALVAGVAHCLSGTHRMGCWPLW*PASFRN
Trigger: ATTACGGAAAGATGCTGGCCACCACAGAGGCCAACA...CCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCTTTACACTGGGAGGCTGGGAGCTaGGCGTCACCATCAGGATGT +
Preference number: 4 (lower is better)
Translates to: GTTELECRKVRSSSCPLHWEAGS*ASPSGC
Trigger: ACATCCTGATGGTGACGCCCAGCTCCCAGCCTCCCA...GTGTAAAGGACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp TTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGCTGAAACTGGGTACCTaGGGGCTGCCATCCACCTCT +
Preference number: 4 (lower is better)
Translates to: FNAEKAGPSCLSQNIGQLLKLGT*GLPSTS
Trigger: AGAGGTGGATGGCAGCCCTCAGGTACCCAGTTTCAG...CAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp TTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGAAAGCCTCCAGGACCTaGCTGCTGGGACTGCTTGTG +
Preference number: 4 (lower is better)
Translates to: FNAEKAGPSCLSQNIGQLKASRT*LLGLLV
Trigger: CACAAGCAGTCCCAGCAGTCAGGTCCTGGAGGCTTT...CAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp CAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCTTTACACAGACTGGAGAGCCAGCCAGTaGGGACCGTTCCTGAGACTC +
Preference number: 4 (lower is better)
Translates to: QRSWSAGKYARVLVLYTDWRASQ*GPFLRL
Trigger: GAGTCTCAGGAACGGTCCTCACTGGCTGGCTCTCCA...GTCTGTGTAAAGGACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp CTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGCAAGAAGTGGTGGGGTaGAAGATAGTTCTGCTTCCT +
Preference number: 4 (lower is better)
Translates to: LALVAGVAHCLSGTHRMGQEVVG*KIVLLP
Trigger: AGGAAGCAGAACTATCTTGCACCCCACCACTTCTTG...CCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCTCTGGGCACTGGTCCTaGAGTGGAGTGGAATGTCCT +
Preference number: 4 (lower is better)
Translates to: VQRGQRSWSAGKYARVLVSGHWS*SGVECP
Trigger: AGGACATTCCACTCCACTGCAGGACCAGTGCCCAGA...GACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp TTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGGATATAGCGCCTCACTaGCTCCTCTGTGTCTGCGGC +
Preference number: 4 (lower is better)
Translates to: FNAEKAGPSCLSQNIGQLDIAPH*LLCVCG
Trigger: GCCGCAGACACAGAGGAGGCAGTGAGGCGCTATATC...CAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp TTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGTGGTACCTCAGGACCTaGCTGTGCAGGGCAGGCTTA +
Preference number: 4 (lower is better)
Translates to: FNAEKAGPSCLSQNIGQLWYLRT*LCRAGL
Trigger: TAAGCCTGCCCTGCACAGGCAGGTCCTGAGGTACCA...CAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp CCTACTTGTAGGATGCTGGTGACAGTGGCAAGTATCTGGGCAAGCACAGGGTGCCCCAGTGCAGTCTTTTaGGGGGATTCTTCTGAGGCG +
Preference number: 4 (lower is better)
Translates to: PTCRMLVTVASIWASTGCPSAVF*GDSSEA
Trigger: CGCCTCAGAAGAATCCCCCCAAAAGACTGCACTGGG...GCACCCTGTGCTTGCCCAGATACTTGCCACTGTCACCAGCATCCTACAAGTAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GGCGGCTGGGCTGGTTTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGCTTCTTGTTCCCAGCTaGCTAGTGCCTCTTCTTTTT +
Preference number: 4 (lower is better)
Translates to: GGWAGFNAEKAGPSCLSQLLVPS*LVPLLF
Trigger: AAAAAGAAGAGGCACTAGCCAGCTGGGAACAAGAAG...CTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAAACCAGCCCAGCCGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
3UTR CAA 72 bp TTGATGGAAGGGGCTGTTTGCAGCCATGGGCCTTGTTaGGGTGCAAAGGCAAGCACTCTTTCCCCCTCCTGT +
Preference number: 4 (lower is better)
Translates to: LMEGAVCSHGPC*GAKASTLSPSC
Trigger: ACAGGAGGGGGAAAGAGTGCTTGCCTTTGCACCCAAACAAGGCCCATGGCTGCAAACAGCCCCTTCCATCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 72 bp GGATTTGATGGAAGGGGCTGTTTGCAGCCATGGGCCTaGTTTGGGTGCAAAGGCAAGCACTCTTTCCCCCTC +
Preference number: 4 (lower is better)
Translates to: GFDGRGCLQPWA*FGCKGKHSFPL
Trigger: GAGGGGGAAAGAGTGCTTGCCTTTGCACCCAAACAAGGCCCATGGCTGCAAACAGCCCCTTCCATCAAATCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
CDS-3UTR GCA 90 bp ACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCCATCTGTTCACATGTTaGTCCCTCCGGGTTACATTC +
Preference number: 4 (lower is better)
Translates to: TERQVKKAQVLLWSLVWPHLFTC*SLRVTF
Trigger: GAATGTAACCCGGAGGGAGCAACATGTGAACAGATG...GGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCATCTAGCACGGGGCTaGTGTTTCCTTGATGGGAAG +
Preference number: 4 (lower is better)
Translates to: VQRGQRSWSAGKYARVLVHLARG*CFLDGK
Trigger: CTTCCCATCAAGGAAACAGCAGCCCCGTGCTAGATG...GACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp ACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCTTTCACAGTCCTCACTaGTCTCTTCTGGCTGTTCTC +
Preference number: 4 (lower is better)
Translates to: TERQVKKAQVLLWSLVWPFHSPH*SLLAVL
Trigger: GAGAACAGCCAGAAGAGACCAGTGAGGACTGTGAAA...GGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp CTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGCGCTCCAGATTCAAGTaGTCAATTGGAATTGGTGAG +
Preference number: 4 (lower is better)
Translates to: LALVAGVAHCLSGTHRMGRSRFK*SIGIGE
Trigger: CTCACCAATTCCAATTGACCACTTGAATCTGGAGCG...CCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
3UTR CAA 72 bp GAAGTCTGCTTCAGTCTCCTGCAGTGGTTCTGTGTATaGCCTGGGACTTGGTGTCTCTGGCCTGTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: EVCFSLLQWFCV*PGTWCLWPVWL
Trigger: AAGCCAGACAGGCCAGAGACACCAAGTCCCAGGCAATACACAGAACCACTGCAGGAGACTGAAGCAGACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR CAA 72 bp CCTTGCTTGGGCAGCTCCAATGGTAGCTGGGGTTCCTaGGAAGGGCATTGGGACACAATTGGAGGAAACAGT +
Preference number: 4 (lower is better)
Translates to: PCLGSSNGSWGS*EGHWDTIGGNS
Trigger: ACTGTTTCCTCCAATTGTGTCCCAATGCCCTTCCAAGGAACCCCAGCTACCATTGGAGCTGCCCAAGCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
CDS-3UTR TCA 90 bp CTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTGGGCTTCAACATCAATGACTaGAAACAGTTCAGAGGACCT +
Preference number: 4 (lower is better)
Translates to: LVWPTAFQEHTGWGPWLGFNIND*KQFRGP
Trigger: AGGTCCTCTGAACTGTTTTCAGTCATTGATGTTGAA...GCCCAACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp GTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCGACTCCAGAGTCTGGTaGGTGTACTGGAAAATCTCC +
Preference number: 4 (lower is better)
Translates to: VQRGQRSWSAGKYARVLVDSRVW*VYWKIS
Trigger: GGAGATTTTCCAGTACACTCACCAGACTCTGGAGTC...GACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCCCAGATGACTCCATGTaGTCTGTATTTTCTAGCTGT +
Preference number: 4 (lower is better)
Translates to: EASEEGSGLALVAGVAHCPDDSM*SVFSSC
Trigger: ACAGCTAGAAAATACAGAGCACATGGAGTCATCTGG...GCAGTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp GGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCTTTACACTTTCGGCCTGAGGGCTaGCGTCTCTTGTGTTTGAGT +
Preference number: 4 (lower is better)
Translates to: GTTELECRKVRSSSCPLHFRPEG*RLLCLS
Trigger: ACTCAAACACAAGAGACGGCAGCCCTCAGGCCGAAA...GTGTAAAGGACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp TCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATACTGCAGGGATTCCTGGGAGGCTaGGAGCTGGGCGTCACCATC +
Preference number: 4 (lower is better)
Translates to: SSSCPLHRHRPISYDILQGFLGG*ELGVTI
Trigger: GATGGTGACGCCCAGCTCCCAGCCTCCCAGGAATCC...CTGCAGTATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp TCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATACTGCAGGCCAGCTCCACAGGCTaGTACCTCAGGACCTGCCTG +
Preference number: 4 (lower is better)
Translates to: SSSCPLHRHRPISYDILQASSTG*YLRTCL
Trigger: CAGGCAGGTCCTGAGGTACCAGCCTGTGGAGCTGGC...CTGCAGTATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
3UTR CAA 72 bp TACTGTGTGACTGGGACACTGAGGGGGACAAATGACTaGTGTGGTATAGGTGAAGCCATGACTGGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: YCVTGTLRGTND*CGIGEAMTGWD
Trigger: GTCCCAGCCAGTCATGGCTTCACCTATACCACACAAGTCATTTGTCCCCCTCAGTGTCCCAGTCACACAGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 72 bp GGCCGGTCCGCTCCAGATTCAAGTGGTCAATTGGAATaGGTGAGAGAGGCTCATTCCAACAGTAGTCACCCA +
Preference number: 4 (lower is better)
Translates to: GRSAPDSSGQLE*VREAHSNSSHP
Trigger: TGGGTGACTACTGTTGGAATGAGCCTCTCTCACCAATTCCAATTGACCACTTGAATCTGGAGCGGACCGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 72 bp TTTTTCTTTCGGCCTGAGGGCTGCCGTCTCTTGTGTTaGAGTTTCTCCTTTCGGGCTGCAGCAGTGGTGAAG +
Preference number: 4 (lower is better)
Translates to: FFFRPEGCRLLC*SFSFRAAAVVK
Trigger: CTTCACCACTGCTGCAGCCCGAAAGGAGAAACTCAAACACAAGAGACGGCAGCCCTCAGGCCGAAAGAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 72 bp GTAGCTGGGGTTCCTTGGAAGGGCATTGGGACACAATaGGAGGAAACAGTCCCACTGTGTAGAAGGACTCCT +
Preference number: 4 (lower is better)
Translates to: VAGVPWKGIGTQ*EETVPLCRRTP
Trigger: AGGAGTCCTTCTACACAGTGGGACTGTTTCCTCCAATTGTGTCCCAATGCCCTTCCAAGGAACCCCAGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
CDS-3UTR TCA 90 bp GGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCTTTACACGTACACCAGTTGTCGTaGAACAGGAAGGAAGAGGCT +
Preference number: 4 (lower is better)
Translates to: GTTELECRKVRSSSCPLHVHQLS*NRKEEA
Trigger: AGCCTCTTCCTTCCTGTTTCACGACAACTGGTGTAC...GTGTAAAGGACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp CCTACTTGTAGGATGCTGGTGACAGTGGCAAGTATCTGGGCAAGCACAGGGTGCCATCTTTCCGTAATGTaGCAATGTTACTGCCCCTCC +
Preference number: 4 (lower is better)
Translates to: PTCRMLVTVASIWASTGCHLSVM*QCYCPS
Trigger: GGAGGGGCAGTAACATTGTCACATTACGGAAAGATG...GCACCCTGTGCTTGCCCAGATACTTGCCACTGTCACCAGCATCCTACAAGTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp TTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGTCCCTTCTAAACTCCTaGTGTAAGGCCAGGGCCATT +
Preference number: 4 (lower is better)
Translates to: FNAEKAGPSCLSQNIGQLSLLNS*CKARAI
Trigger: AATGGCCCTGGCCTTACAGCAGGAGTTTAGAAGGGA...CAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp TTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGATGCCACCCTGGAAATaGTACTGTGTGACTGGGACA +
Preference number: 4 (lower is better)
Translates to: FNAEKAGPSCLSQNIGQLMPPWK*YCVTGT
Trigger: TGTCCCAGTCACACAGTAGCATTTCCAGGGTGGCAT...CAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GCTCTGAGTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTAATAGGCTGTGTGTGTaGCATGATCACAGAGAACTG +
Preference number: 4 (lower is better)
Translates to: ALSPKGTTELECRKVRSSNRLCV*HDHREL
Trigger: CAGTTCTCTGTGATCATGCCACACACACAGCCTATT...ACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGACTCAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp GTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGTCACTCTGCTCTTCATaGTCAACTGTTATTTGTGAC +
Preference number: 4 (lower is better)
Translates to: VLLWSLVWPTAFQEHTGWSLCSS*STVICD
Trigger: GTCACAAATAACAGTTGATCATGAAGAGCAGAGTGA...CCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR TCA 90 bp GTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCGGAATCTTTAGAAACTaGCTCTGTCTTGGTGTGCTC +
Preference number: 4 (lower is better)
Translates to: VQRGQRSWSAGKYARVLVGIFRN*LCLGVL
Trigger: GAGCACACCAAGACAGAGTCAGTTTCTAAAGATTCC...GACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp TCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATACTGCAGGGCTGGTTTTCTGGCTaGAGAGCAGCCAGGGGATGT +
Preference number: 4 (lower is better)
Translates to: SSSCPLHRHRPISYDILQGWFSG*RAARGC
Trigger: ACATCCCCTGGCTGCTCTGCAGCCAGAAAACCAGCC...CTGCAGTATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
3UTR CAA 72 bp TCAGATGACACTCTTGGATTTGATGGAAGGGGCTGTTaGCAGCCATGGGCCTTGTTTGGGTGCAAAGGCAAG +
Preference number: 4 (lower is better)
Translates to: SDDTLGFDGRGC*QPWALFGCKGK
Trigger: CTTGCCTTTGCACCCAAACAAGGCCCATGGCTGCAAACAGCCCCTTCCATCAAATCCAAGAGTGTCATCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 72 bp CTGATGGGAAGAGCTAGCCAGCCCTCTCCTCTCCTTTaGTCTGCAGAGGTTGAACATGGCTCCTGTCATTTT +
Preference number: 4 (lower is better)
Translates to: LMGRASQPSPLL*SAEVEHGSCHF
Trigger: AAAATGACAGGAGCCATGTTCAACCTCTGCAGACAAAAGGAGAGGAGAGGGCTGGCTAGCTCTTCCCATCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR CAA 72 bp CCAAACTCAGCAGAGGAGCTTTTAGAGCTAAAGGAGTaGTCACTGCCGTCCACAGAGGTAGCCATGGATTCC +
Preference number: 4 (lower is better)
Translates to: PNSAEELLELKE*SLPSTEVAMDS
Trigger: GGAATCCATGGCTACCTCTGTGGACGGCAGTGACAACTCCTTTAGCTCTAAAAGCTCCTCTGCTGAGTTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
CDS-3UTR TCA 90 bp TCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATACTGCAGCGGGTACTGACTGTGTaGGGTCAATGGGTGGAGACT +
Preference number: 4 (lower is better)
Translates to: SSSCPLHRHRPISYDILQRVLTV*GQWVET
Trigger: AGTCTCCACCCATTGACCTCACACAGTCAGTACCCG...CTGCAGTATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp CAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCTTTACACAGACGCATTGGGACACAATTaGAGGAAACAGTCCCACTGT +
Preference number: 4 (lower is better)
Translates to: QRSWSAGKYARVLVLYTDALGHN*RKQSHC
Trigger: ACAGTGGGACTGTTTCCTCCAATTGTGTCCCAATGC...GTCTGTGTAAAGGACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCTTTACACCGAATACCTTGGCATTaGAGTTATAGGCACTTTGGG +
Preference number: 4 (lower is better)
Translates to: GTTELECRKVRSSSCPLHRIPWH*SYRHFG
Trigger: CCCAAAGTGCCTATAACTCCAATGCCAAGGTATTCG...GTGTAAAGGACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
3UTR CAA 72 bp TCAGGCTTATTGACTTTCCTCCTCCTTGGCTCCCTTTaGGTGGTGACTCCTTTCCGTTTCAAACCTCCAACG +
Preference number: 4 (lower is better)
Translates to: SGLLTFLLLGSL*VVTPFRFKPPT
Trigger: CGTTGGAGGTTTGAAACGGAAAGGAGTCACCACCAAAAGGGAGCCAAGGAGGAGGAAAGTCAATAAGCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CAA 72 bp CGCCAGCCTGCAGGTTCCAATTCTTCCTTAGAAATCTaGCTGGCAAGAAGTGGTGGGGTGCAAGATAGTTCT +
Preference number: 4 (lower is better)
Translates to: RQPAGSNSSLEI*LARSGGVQDSS
Trigger: AGAACTATCTTGCACCCCACCACTTCTTGCCAGCAAGATTTCTAAGGAAGAATTGGAACCTGCAGGCTGGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
CDS-3UTR TCA 90 bp TCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATACTGCAGTTCGGCTCTTGGTGGTaGGGAACGGTTTCCCACATA +
Preference number: 4 (lower is better)
Translates to: SSSCPLHRHRPISYDILQFGSWW*GTVSHI
Trigger: TATGTGGGAAACCGTTCCTCACCACCAAGAGCCGAA...CTGCAGTATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000156542.8
CDS-3UTR CCA 90 bp GTGGGCATCTCGCATAAAGAACAAACTTGTGTGCATAAAGCACCTCTCCACTGTCGGTTTCCCACATATTaGGCAATCAGGGATCCGAGG +
Preference number: 4 (lower is better)
Translates to: VGISHKEQTCVHKAPLHCRFPTY*AIRDPR
Trigger: CCTCGGATCCCTGATTGCCCAATATGTGGGAAACCG...ACAGTGGAGAGGTGCTTTATGCACACAAGTTTGTTCTTTATGCGAGATGCCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
3UTR CAA 72 bp CTTCCTTCTGGGGAATCTTTAGAAACTGACTCTGTCTaGGTGTGCTCCAGCTCCTCATCTGAGTCCAGTAAC +
Preference number: 4 (lower is better)
Translates to: LPSGESLETDSV*VCSSSSSESSN
Trigger: GTTACTGGACTCAGATGAGGAGCTGGAGCACACCAAGACAGAGTCAGTTTCTAAAGATTCCCCAGAAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 72 bp GCAGTCTCATCTGACGGAATCCTGGTCTTAAGGCTTTaGATTTGGGTCTGTGATGAGCAATCACGACTCCTG +
Preference number: 4 (lower is better)
Translates to: AVSSDGILVLRL*IWVCDEQSRLL
Trigger: CAGGAGTCGTGATTGCTCATCACAGACCCAAATCAAAAGCCTTAAGACCAGGATTCCGTCAGATGAGACTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
3UTR CAA 72 bp TGGAAAATCTCCTTCAGTTTTAGAACCATCTGGCGTTaGGGCAGAGCACGGACTCCAAACCTGTCCAGTTCT +
Preference number: 4 (lower is better)
Translates to: WKISFSFRTIWR*GRARTPNLSSS
Trigger: AGAACTGGACAGGTTTGGAGTCCGTGCTCTGCCCAAACGCCAGATGGTTCTAAAACTGAAGGAGATTTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
CDS-3UTR CCA 90 bp TCCTTGTCTTCATCTGAATACTCAAACGCAGCTCCAAACTCAGCAGAGGAGCTTTCTCCACTGTCAAGCTaGAACTGGACATCACTCAGG +
Preference number: 4 (lower is better)
Translates to: SLSSSEYSNAAPNSAEELSPLSS*NWTSLR
Trigger: CCTGAGTGATGTCCAGTTCCAGCTTGACAGTGGAGA...AAGCTCCTCTGCTGAGTTTGGAGCTGCGTTTGAGTATTCAGATGAAGACAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
CDS-3UTR CCA 90 bp CCTACTTGTAGGATGCTGGTGACAGTGGCAAGTATCTGGGCAAGCACAGGGTGCTTAAGGCTTTTGATTTaGGTCTGTGATGAGCAATCA +
Preference number: 4 (lower is better)
Translates to: PTCRMLVTVASIWASTGCLRLLI*VCDEQS
Trigger: TGATTGCTCATCACAGACCCAAATCAAAAGCCTTAA...GCACCCTGTGCTTGCCCAGATACTTGCCACTGTCACCAGCATCCTACAAGTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCTTTACACATACTGAATAAGAAGTaGGCATCTCGCATAAAGAAC +
Preference number: 4 (lower is better)
Translates to: GTTELECRKVRSSSCPLHILNKK*ASRIKN
Trigger: GTTCTTTATGCGAGATGCCCACTTCTTATTCAGTAT...GTGTAAAGGACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
3UTR CAA 72 bp CTGTTATTTGTGACAGTTCAGATGACACTCTTGGATTaGATGGAAGGGGCTGTTTGCAGCCATGGGCCTTGT +
Preference number: 4 (lower is better)
Translates to: LLFVTVQMTLLD*MEGAVCSHGPC
Trigger: ACAAGGCCCATGGCTGCAAACAGCCCCTTCCATCAAATCCAAGAGTGTCATCTGAACTGTCACAAATAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146569.8
ENSMUST00000156542.8
CDS-3UTR TCA 90 bp TCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATACTGCAGAGTCCAGTAACAGGATaGCCTCATCCTCCTTTTTCA +
Preference number: 4 (lower is better)
Translates to: SSSCPLHRHRPISYDILQSPVTG*PHPPFS
Trigger: TGAAAAAGGAGGATGAGGTCATCCTGTTACTGGACT...CTGCAGTATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CCA 90 bp GTACGCTCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATACAATCTGTCTACCTGTaGTCTCAGAGTCTTGGGTTA +
Preference number: 4 (lower is better)
Translates to: VRSSSCPLHRHRPISYDIQSVYL*SQSLGL
Trigger: TAACCCAAGACTCTGAGACCACAGGTAGACAGATTG...TATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGAGCGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR GCA 90 bp TCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATACTGCAGTGGAGAAGCTTCCTCTaGGTAGCAGCAAATTCATAT +
Preference number: 4 (lower is better)
Translates to: SSSCPLHRHRPISYDILQWRSFL*VAANSY
Trigger: ATATGAATTTGCTGCTACGCAGAGGAAGCTTCTCCA...CTGCAGTATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
3UTR CAA 72 bp ATGATCGAATACCTTGGCATTGGAGTTATAGGCACTTaGGGAGGCAAGTTCTTTTTCTGGTTAGCACCTTAT +
Preference number: 4 (lower is better)
Translates to: MIEYLGIGVIGT*GGKFFFWLAPY
Trigger: ATAAGGTGCTAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTATTCGATCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
3UTR CAA 72 bp ATGATCGAATACCTTGGCATTGGAGTTATAGGCACTTaGGGAGGCAAGTTCTTTTTCTGGTTAGCACCTTTT +
Preference number: 4 (lower is better)
Translates to: MIEYLGIGVIGT*GGKFFFWLAPF
Trigger: AAAAGGTGCTAACCAGAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCCAATGCCAAGGTATTCGATCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
CDS-3UTR CAA 90 bp CTGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGACTCGGCTCTCCTaGCTTGGGCAGCTCCAATGG +
Preference number: 5 (lower is better)
Translates to: LGKHRVQAARRCLVCHGGWTRLS*LGQLQW
Trigger: CCATTGGAGCTGCCCAAGCAAGGAGAGCCGAGTCCA...GCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGAAGGTCCTGAAGGGCTaGACGCTCCCTCTGGCTGGA +
Preference number: 5 (lower is better)
Translates to: ASTGCRPPVGVWSAMAAGKVLKG*TLPLAG
Trigger: TCCAGCCAGAGGGAGCGTCAAGCCCTTCAGGACCTT...CCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCGGCTGGGAGTTGCCATaGGGAGCACTCTCTGGAACC +
Preference number: 5 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFGWELP*GALSGT
Trigger: GGTTCCAGAGAGTGCTCCCAATGGCAACTCCCAGCC...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp TGGGCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTCTCGGCTCTCCTTGCTaGGGCAGCTCCAATGGTAGC +
Preference number: 5 (lower is better)
Translates to: WASTGCRPPVGVWSAMAALGSPC*GSSNGS
Trigger: GCTACCATTGGAGCTGCCCAAGCAAGGAGAGCCGAG...AGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGCCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCGGAGCCTCAGGCTTATaGACTTTCCTCCTCCTTGGC +
Preference number: 5 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFGASGL*TFLLLG
Trigger: GCCAAGGAGGAGGAAAGTCAATAAGCCTGAGGCTCC...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GCAAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCAATGGGTGGAGACTTaGCTGGGGAAATCAGGATGC +
Preference number: 5 (lower is better)
Translates to: ASTGCRPPVGVWSAMAAGQWVET*LGKSGC
Trigger: GCATCCTGATTTCCCCAGCAAAGTCTCCACCCATTG...CCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCACGGTTTCCCACATATaGGGCAATCAGGGATCCGAG +
Preference number: 5 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFTVSHI*GNQGSE
Trigger: CTCGGATCCCTGATTGCCCAATATGTGGGAAACCGT...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000156542.8
CDS-3UTR CAA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCGGCATTGGGACACAATaGGAGGAAACAGTCCCACTG +
Preference number: 5 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFGIGTQ*EETVPL
Trigger: CAGTGGGACTGTTTCCTCCAATTGTGTCCCAATGCC...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp AAGCACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTTTGGAGACAGTGATCTaGGGGATGCCACCCTGGAAA +
Preference number: 5 (lower is better)
Translates to: KHRVQAARRCLVCHGGWALETVI*GMPPWK
Trigger: TTTCCAGGGTGGCATCCCCAAGATCACTGTCTCCAA...AGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGTGCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp AGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTCGAGGGCTGCCGTCTCTaGTGTTTGAGTTTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: RVQAARRCLVCHGGWAGFEGCRL*CLSFSF
Trigger: AAAGGAGAAACTCAAACACAAGAGACGGCAGCCCTC...GAAACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp ACAGGGTGCAGGCCGCCCGTCGGTGTCTGGTCTGCCATGGCGGCTGGGCTGGTTTTCCTTGGAAGGGCATaGGGACACAATTGGAGGAAA +
Preference number: 5 (lower is better)
Translates to: TGCRPPVGVWSAMAAGLVFLGRA*GHNWRK
Trigger: TTTCCTCCAATTGTGTCCCAATGCCCTTCCAAGGAA...AACCAGCCCAGCCGCCATGGCAGACCAGACACCGACGGGCGGCCTGCACCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GGCGGCTGGGCTGGTTTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGCACCACGGCGGGCACTaGTTCACACAGCTGAACAAG +
Preference number: 5 (lower is better)
Translates to: GGWAGFNAEKAGPSCLSQHHGGH*FTQLNK
Trigger: CTTGTTCAGCTGTGTGAACAAGTGCCCGCCGTGGTG...CTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAAACCAGCCCAGCCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp CTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTGGGCTCTGGTACTCAGCATTaGAGCCACAGGTGGGGCCTC +
Preference number: 5 (lower is better)
Translates to: LVWPTAFQEHTGWGPWLGSGTQH*SHRWGL
Trigger: GAGGCCCCACCTGTGGCTCAAATGCTGAGTACCAGA...GCCCAACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS GCA 90 bp GAAGAGCTTTGCTCCTGGCGGCAACTTGGCGGCCTTCTTTCCGTTTaGCTCGGTTCTGAGTGTGGCCAGAGGCCTTCTGCCTCGTCCTCT +
Preference number: 5 (lower is better)
Translates to: EELCSWRQLGGLLSV*LGSECGQRPSASSS
Trigger: AGAGGACGAGGCAGAAGGCCTCTGGCCACACTCAGAACCGAGGCAAACGGAAAGAAGGCCGCCAAGTTGCCGCCAGGAGCAAAGCTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS-3UTR CAA 90 bp TTTTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGTAGCCTGAAGCAGGAGTaGGGGACCCACTTCCATCCT +
Preference number: 5 (lower is better)
Translates to: FSGCRAARGCLCSPAQTGSLKQE*GTHFHP
Trigger: AGGATGGAAGTGGGTCCCCAACTCCTGCTTCAGGCT...ACCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
CDS-3UTR CAA 90 bp GGCGGCTGGGCTGGTTTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGCTCCTTGGCTCCCTTTaGGTGGTGACTCCTTTCCGT +
Preference number: 5 (lower is better)
Translates to: GGWAGFNAEKAGPSCLSQLLGSL*VVTPFR
Trigger: ACGGAAAGGAGTCACCACCAAAAGGGAGCCAAGGAG...CTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAAACCAGCCCAGCCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGTGCTTGGGTGACAGCAGCCGGATCTaGGGGCTGTGGCTCACAGGA +
Preference number: 5 (lower is better)
Translates to: EKAGPSCLSQNIGQLCLGDSSRI*GLWLTG
Trigger: TCCTGTGAGCCACAGCCCCAAGATCCGGCTGCTGTC...ACCCAAGCACAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp ACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCAGCCTGAAGCAGGAGTaGGGGACCCACTTCCATCCT +
Preference number: 5 (lower is better)
Translates to: TERQVKKAQVLLWSLVWPSLKQE*GTHFHP
Trigger: AGGATGGAAGTGGGTCCCCAACTCCTGCTTCAGGCT...GGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000156542.8
CDS-3UTR CAA 90 bp GCTCTGAGTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTCGCTATGGGGCTACTTaGTTGGCCTCTGTGGTGGCC +
Preference number: 5 (lower is better)
Translates to: ALSPKGTTELECRKVRSSRYGAT*LASVVA
Trigger: GGCCACCACAGAGGCCAACAAAGTAGCCCCATAGCG...ACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGACTCAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GTTTTCTGGCTGCAGAGCAGCCAGGGGATGTCTCTGCAGCCCAGCGCAGACTGGCTCAGGTGTGGATTATaGACCATGGCCCCAAAGTCT +
Preference number: 5 (lower is better)
Translates to: VFWLQSSQGMSLQPSADWLRCGL*TMAPKS
Trigger: AGACTTTGGGGCCATGGTCAATAATCCACACCTGAG...CCAGTCTGCGCTGGGCTGCAGAGACATCCCCTGGCTGCTCTGCAGCCAGAAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
CDS-3UTR CAA 90 bp AGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCACTTGCAGCCATGGGCCTaGTTTGGGTGCAAAGGCAAG +
Preference number: 5 (lower is better)
Translates to: REASEEGSGLALVAGVAHLQPWA*FGCKGK
Trigger: CTTGCCTTTGCACCCAAACAAGGCCCATGGCTGCAA...GTGGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp ACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCGATGGAAGGGGCTGTTaGCAGCCATGGGCCTTGTTT +
Preference number: 5 (lower is better)
Translates to: TERQVKKAQVLLWSLVWPDGRGC*QPWALF
Trigger: AAACAAGGCCCATGGCTGCAAACAGCCCCTTCCATC...GGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GCTCTGAGTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTAGAACCATCTGGCGTTaGGGCAGAGCACGGACTCCA +
Preference number: 5 (lower is better)
Translates to: ALSPKGTTELECRKVRSSRTIWR*GRARTP
Trigger: TGGAGTCCGTGCTCTGCCCAAACGCCAGATGGTTCT...ACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGACTCAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS TCA 90 bp CTAGGGGTCTGGCTGCCTAATCGAGGTTTCTTCTCTGAAGGGCCTTaGAGAGCTTTGCTCCTGGCGGCAACTTGGCGGCCTTCTTTCCGT +
Preference number: 5 (lower is better)
Translates to: LGVWLPNRGFFSEGP*RALLLAATWRPSFR
Trigger: ACGGAAAGAAGGCCGCCAAGTTGCCGCCAGGAGCAAAGCTCTTCAAGGCCCTTCAGAGAAGAAACCTCGATTAGGCAGCCAGACCCCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS GCA 90 bp GGCTGCCTAATCGAGGTTTCTTCTCTGAAGGGCCTTGAAGAGCTTTaGTCCTGGCGGCAACTTGGCGGCCTTCTTTCCGTTTGCCTCGGT +
Preference number: 5 (lower is better)
Translates to: GCLIEVSSLKGLEEL*SWRQLGGLLSVCLG
Trigger: ACCGAGGCAAACGGAAAGAAGGCCGCCAAGTTGCCGCCAGGAGCAAAGCTCTTCAAGGCCCTTCAGAGAAGAAACCTCGATTAGGCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS-3UTR CAA 90 bp ACAGAGAGGCAAGTGAAGAAGGCTCAGGTCTTGCTCTGGTCGCTGGTGTGGCCCTCTGAGACTCTGGGTTaGGAGGGACTTGGTACACCA +
Preference number: 5 (lower is better)
Translates to: TERQVKKAQVLLWSLVWPSETLG*EGLGTP
Trigger: TGGTGTACCAAGTCCCTCCAAACCCAGAGTCTCAGA...GGGCCACACCAGCGACCAGAGCAAGACCTGAGCCTTCTTCACTTGCCTCTCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp CCTACTTGTAGGATGCTGGTGACAGTGGCAAGTATCTGGGCAAGCACAGGGTGCGGTAGCTGGGGTTCCTaGGAAGGGCATTGGGACACA +
Preference number: 5 (lower is better)
Translates to: PTCRMLVTVASIWASTGCGSWGS*EGHWDT
Trigger: TGTGTCCCAATGCCCTTCCAAGGAACCCCAGCTACC...GCACCCTGTGCTTGCCCAGATACTTGCCACTGTCACCAGCATCCTACAAGTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTCTCAGGTGTGGATTATaGACCATGGCCCCAAAGTCT +
Preference number: 5 (lower is better)
Translates to: VAGVAHCLSGTHRMGTLVLRCGL*TMAPKS
Trigger: AGACTTTGGGGCCATGGTCAATAATCCACACCTGAG...AACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000146569.8
CDS-3UTR CAA 90 bp GCTCTGAGTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTAGCCATGGGCCTTGTTaGGGTGCAAAGGCAAGCACT +
Preference number: 5 (lower is better)
Translates to: ALSPKGTTELECRKVRSSSHGPC*GAKAST
Trigger: AGTGCTTGCCTTTGCACCCAAACAAGGCCCATGGCT...ACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGACTCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGAAACTGACTCTGTCTaGGTGTGCTCCAGCTCCTCA +
Preference number: 5 (lower is better)
Translates to: VLLWSLVWPTAFQEHTGWETDSV*VCSSSS
Trigger: TGAGGAGCTGGAGCACACCAAGACAGAGTCAGTTTC...CCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTTTAGAGCTAAAGGAGTaGTCACTGCCGTCCACAGAG +
Preference number: 5 (lower is better)
Translates to: VAGVAHCLSGTHRMGTLVLELKE*SLPSTE
Trigger: CTCTGTGGACGGCAGTGACAACTCCTTTAGCTCTAA...AACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTCCGACCTCCTCATCCTaGTCTTCATCTGAATACTCA +
Preference number: 5 (lower is better)
Translates to: GRWCGPLPFRNTQDGDPGPTSSS*SSSEYS
Trigger: TGAGTATTCAGATGAAGACAAGGATGAGGAGGTCGG...ACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS GCA 90 bp TCTTCTGAGGCGTGTCTCAGGCGCTCAGGGTCTGCTCTCTTGAACTaGTTCATCCGTTGCAGAACCAGCTCTGAGACTCTGGGTTTGGAG +
Preference number: 5 (lower is better)
Translates to: SSEACLRRSGSALLN*FIRCRTSSETLGLE
Trigger: CTCCAAACCCAGAGTCTCAGAGCTGGTTCTGCAACGGATGAAGCAGTTCAAGAGAGCAGACCCTGAGCGCCTGAGACACGCCTCAGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS-3UTR CAA 90 bp GTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCTCCACTTCCTCCTCATaGTCTACCCACACCGACCTC +
Preference number: 5 (lower is better)
Translates to: VQRGQRSWSAGKYARVLVSTSSS*STHTDL
Trigger: GAGGTCGGTGTGGGTAGACAATGAGGAGGAAGTGGA...GACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp TTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGAATATAGGGCAGCTGGGGGCTGCTGTTTCCTaGATGGGAAGCCACCTCATC +
Preference number: 5 (lower is better)
Translates to: FNAEKAGPSCLSQNIGQLGAAVS*MGSHLI
Trigger: GATGAGGTGGCTTCCCATCAAGGAAACAGCAGCCCC...CAGCTGCCCTATATTCTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS GCA 90 bp TGTCTCAGGCGCTCAGGGTCTGCTCTCTTGAACTGCTTCATCCGTTaGAGAACCAGCTCTGAGACTCTGGGTTTGGAGGGACTTGGTACA +
Preference number: 5 (lower is better)
Translates to: CLRRSGSALLNCFIR*RTSSETLGLEGLGT
Trigger: TGTACCAAGTCCCTCCAAACCCAGAGTCTCAGAGCTGGTTCTGCAACGGATGAAGCAGTTCAAGAGAGCAGACCCTGAGCGCCTGAGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS CCA 90 bp CTAATCGAGGTTTCTTCTCTGAAGGGCCTTGAAGAGCTTTGCTCCTaGCGGCAACTTGGCGGCCTTCTTTCCGTTTGCCTCGGTTCTGAG +
Preference number: 5 (lower is better)
Translates to: LIEVSSLKGLEELCS*RQLGGLLSVCLGSE
Trigger: CTCAGAACCGAGGCAAACGGAAAGAAGGCCGCCAAGTTGCCGCCAGGAGCAAAGCTCTTCAAGGCCCTTCAGAGAAGAAACCTCGATTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS-3UTR CAA 90 bp GTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGACCCTGGTTCTGGTCTTAAGGCTTTaGATTTGGGTCTGTGATGAG +
Preference number: 5 (lower is better)
Translates to: VAGVAHCLSGTHRMGTLVLVLRL*IWVCDE
Trigger: CTCATCACAGACCCAAATCAAAAGCCTTAAGACCAG...AACCAGGGTCCCCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS TCA 90 bp AGGAGTTGGGGACCCACTTCCATCCTCACCGCACACTGCTTCAAGTaGCTGATTCGGCTCTTGGTGGTGAGGAACGGTTTCCCACATATT +
Preference number: 5 (lower is better)
Translates to: RSWGPTSILTAHCFK*LIRLLVVRNGFPHI
Trigger: AATATGTGGGAAACCGTTCCTCACCACCAAGAGCCGAATCAGTCACTTGAAGCAGTGTGCGGTGAGGATGGAAGTGGGTCCCCAACTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000156542.8
ENSMUST00000165830.2
CDS-3UTR CAA 90 bp GGCGGCTGGGCTGGTTTCAATGCTGAGAAGGCTGGACCCAGTTGCCTGTCCCAGGTTTTTCTGACACATTaGACAGAAGAACAACCCCTT +
Preference number: 5 (lower is better)
Translates to: GGWAGFNAEKAGPSCLSQVFLTH*TEEQPL
Trigger: AAGGGGTTGTTCTTCTGTCAAATGTGTCAGAAAAAC...CTGGGACAGGCAACTGGGTCCAGCCTTCTCAGCATTGAAACCAGCCCAGCCGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GTCTTGCTCTGGTCGCTGGTGTGGCCCACTGCCTTTCAGGAACACACAGGATGGGGAGTTATAGGCACTTaGGGAGGCAAGTTCTTTTTC +
Preference number: 5 (lower is better)
Translates to: VLLWSLVWPTAFQEHTGWGVIGT*GGKFFF
Trigger: GAAAAAGAACTTGCCTCCCAAAGTGCCTATAACTCC...CCATCCTGTGTGTTCCTGAAAGGCAGTGGGCCACACCAGCGACCAGAGCAAGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS TCA 90 bp AGGGTCTGCTCTCTTGAACTGCTTCATCCGTTGCAGAACCAGCTCTaGGACTCTGGGTTTGGAGGGACTTGGTACACCAGTTGTCGTGAA +
Preference number: 5 (lower is better)
Translates to: RVCSLELLHPLQNQL*DSGFGGTWYTSCRE
Trigger: TTCACGACAACTGGTGTACCAAGTCCCTCCAAACCCAGAGTCTCAGAGCTGGTTCTGCAACGGATGAAGCAGTTCAAGAGAGCAGACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS CCA 90 bp GTCTGTGGCATCAAGTTTATACTCATTTTCTCCCACTGTCTCCTCTaGAGGGCTCCTTGGGACATCGTCTCCCAGTGCAGTCTTTTGGGG +
Preference number: 5 (lower is better)
Translates to: VCGIKFILIFSHCLL*RAPWDIVSQCSLLG
Trigger: CCCCAAAAGACTGCACTGGGAGACGATGTCCCAAGGAGCCCTCCAGAGGAGACAGTGGGAGAAAATGAGTATAAACTTGATGCCACAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS-3UTR CAA 90 bp GCTCTGAGTCCAAAGGGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCCGGGTTACATTCATaGCTGAGAGGTTTTTCTGAC +
Preference number: 5 (lower is better)
Translates to: ALSPKGTTELECRKVRSSSGLHS*LRGFSD
Trigger: GTCAGAAAAACCTCTCAGCAATGAATGTAACCCGGA...ACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCCCTTTGGACTCAGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCTTTACACAGGGGGACAAATGACTaGTGTGGTATAGGTGAAGCC +
Preference number: 5 (lower is better)
Translates to: GTTELECRKVRSSSCPLHRGTND*CGIGEA
Trigger: GGCTTCACCTATACCACACAAGTCATTTGTCCCCCT...GTGTAAAGGACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp CAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCTTTACACAGACGGCAACCTTGAAGGGTaGCAGGTCTCAGTGGTAGAT +
Preference number: 5 (lower is better)
Translates to: QRSWSAGKYARVLVLYTDGNLEG*QVSVVD
Trigger: ATCTACCACTGAGACCTGCAACCCTTCAAGGTTGCC...GTCTGTGTAAAGGACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS TCA 90 bp TCGGTTCTGAGTGTGGCCAGAGGCCTTCTGCCTCGTCCTCTCTCCTaGTGCTTCTTTGGTCCCATTTCTTTTCACCCTTTGGAAAAAGCT +
Preference number: 5 (lower is better)
Translates to: SVLSVARGLLPRPLS*CFFGPISFHPLEKA
Trigger: AGCTTTTTCCAAAGGGTGAAAAGAAATGGGACCAAAGAAGCATCAGGAGAGAGGACGAGGCAGAAGGCCTCTGGCCACACTCAGAACCGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171762.2
CDS CCA 90 bp TGTGGCCAGAGGCCTTCTGCCTCGTCCTCTCTCCTGATGCTTCTTTaGTCCCATTTCTTTTCACCCTTTGGAAAAAGCTGGCACAGAGTT +
Preference number: 5 (lower is better)
Translates to: CGQRPSASSSLLMLL*SHFFSPFGKSWHRV
Trigger: AACTCTGTGCCAGCTTTTTCCAAAGGGTGAAAAGAAATGGGACCAAAGAAGCATCAGGAGAGAGGACGAGGCAGAAGGCCTCTGGCCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171762.2
CDS-3UTR CAA 90 bp GTACGCTCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATAGGAAGAGGCTGGGAGTaGCCATTGGGAGCACTCTCT +
Preference number: 5 (lower is better)
Translates to: VRSSSCPLHRHRPISYDIGRGWE*PLGALS
Trigger: AGAGAGTGCTCCCAATGGCAACTCCCAGCCTCTTCC...TATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGAGCGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GGGACAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCTTTACACTCTTCCTTAGAAATCTaGCTGGCAAGAAGTGGTGGG +
Preference number: 5 (lower is better)
Translates to: GTTELECRKVRSSSCPLHSSLEI*LARSGG
Trigger: CCCACCACTTCTTGCCAGCAAGATTTCTAAGGAAGA...GTGTAAAGGACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTGTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GTACGCTCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATATATGGGGCTACTTTGTaGGCCTCTGTGGTGGCCAGC +
Preference number: 5 (lower is better)
Translates to: VRSSSCPLHRHRPISYDIYGATL*ASVVAS
Trigger: GCTGGCCACCACAGAGGCCAACAAAGTAGCCCCATA...TATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGAGCGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp CAACGGAGCTGGAGTGCAGGAAAGTACGCTCGAGTTCTTGTCCTTTACACAGACATGACACTCTTGGATTaGATGGAAGGGGCTGTTTGC +
Preference number: 5 (lower is better)
Translates to: QRSWSAGKYARVLVLYTDMTLLD*MEGAVC
Trigger: GCAAACAGCCCCTTCCATCAAATCCAAGAGTGTCAT...GTCTGTGTAAAGGACAAGAACTCGAGCGTACTTTCCTGCACTCCAGCTCCGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp GTACGCTCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATATCAGGGTCTGCTCTCTaGAACTGCTTCATCCGTTGC +
Preference number: 5 (lower is better)
Translates to: VRSSSCPLHRHRPISYDISGSAL*NCFIRC
Trigger: GCAACGGATGAAGCAGTTCAAGAGAGCAGACCCTGA...TATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGAGCGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS-3UTR CAA 90 bp ATGACTCCATGTGCTCTGTATTTTCTAGCTGTCTGTTACTCTGGACACCTGCCAACGGTTTCCCACATATaGGGCAATCAGGGATCCGAG +
Preference number: 5 (lower is better)
Translates to: MTPCALYFLAVCYSGHLPTVSHI*GNQGSE
Trigger: CTCGGATCCCTGATTGCCCAATATGTGGGAAACCGT...TGGCAGGTGTCCAGAGTAACAGACAGCTAGAAAATACAGAGCACATGGAGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156542.8
CDS-3UTR CAA 90 bp GTACGCTCGAGTTCTTGTCCTTTACACAGACATAGGCCCATATCCTACGACATATCTCTTCAGTGGGCTTaGGAAATGTTCATGATCTTC +
Preference number: 5 (lower is better)
Translates to: VRSSSCPLHRHRPISYDISLQWA*EMFMIF
Trigger: GAAGATCATGAACATTTCCAAAGCCCACTGAAGAGA...TATGTCGTAGGATATGGGCCTATGTCTGTGTAAAGGACAAGAACTCGAGCGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040790.14
CDS GCA 72 bp TGCTCCTGGCGGCAACTTGGCGGCCTTCTTTCCGTTTaGCTCGGTTCTGAGTGTGGCCAGAGGCCTTCTGCC +
Preference number: 6 (lower is better)
Translates to: CSWRQLGGLLSV*LGSECGQRPSA
Trigger: GGCAGAAGGCCTCTGGCCACACTCAGAACCGAGGCAAACGGAAAGAAGGCCGCCAAGTTGCCGCCAGGAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS TCA 72 bp CCCTTCCCATTCGCAGGGAGAGCTGGGCCCCCTTCTTaGGACTTGGGTGCCCCTTGCTTTGTAGTCCTAGGG +
Preference number: 6 (lower is better)
Translates to: PFPFAGRAGPPS*DLGAPCFVVLG
Trigger: CCCTAGGACTACAAAGCAAGGGGCACCCAAGTCTCAAGAAGGGGGCCCAGCTCTCCCTGCGAATGGGAAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS CCA 72 bp GGGCTCCTTGGGACATCGTCTCCCAGTGCAGTCTTTTaGGGGGATTCTTCTGAGGCGTGTCTCAGGCGCTCA +
Preference number: 6 (lower is better)
Translates to: GLLGTSSPSAVF*GDSSEACLRRS
Trigger: TGAGCGCCTGAGACACGCCTCAGAAGAATCCCCCCAAAAGACTGCACTGGGAGACGATGTCCCAAGGAGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS CCA 72 bp CGCTTAGGGCCAGGGAACGCAGATCCGGAACCAGGCTaGGAGGCATGTCAGTGTCTGCCATGTAGAGGTAGT +
Preference number: 6 (lower is better)
Translates to: RLGPGNADPEPG*EACQCLPCRGS
Trigger: ACTACCTCTACATGGCAGACACTGACATGCCTCCCAGCCTGGTTCCGGATCTGCGTTCCCTGGCCCTAAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146569.8
CDS CCA 72 bp AGCAAGAACGTCTCCCTTCCCATTCGCAGGGAGAGCTaGGCCCCCTTCTTGAGACTTGGGTGCCCCTTGCTT +
Preference number: 6 (lower is better)
Translates to: SKNVSLPIRRES*APFLRLGCPLL
Trigger: AAGCAAGGGGCACCCAAGTCTCAAGAAGGGGGCCCAGCTCTCCCTGCGAATGGGAAGGGAGACGTTCTTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS CAA 72 bp TCCCTTCCCATTCGCAGGGAGAGCTGGGCCCCCTTCTaGAGACTTGGGTGCCCCTTGCTTTGTAGTCCTAGG +
Preference number: 6 (lower is better)
Translates to: SLPIRRESWAPF*RLGCPLLCSPR
Trigger: CCTAGGACTACAAAGCAAGGGGCACCCAAGTCTCAAGAAGGGGGCCCAGCTCTCCCTGCGAATGGGAAGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS CAA 90 bp GGGGATTCTTCTGAGGCGTGTCTCAGGCGCTCAGGGTCTGCTCTCTaGAACTGCTTCATCCGTTGCAGAACCAGCTCTGAGACTCTGGGT +
Preference number: 6 (lower is better)
Translates to: GDSSEACLRRSGSAL*NCFIRCRTSSETLG
Trigger: ACCCAGAGTCTCAGAGCTGGTTCTGCAACGGATGAAGCAGTTCAAGAGAGCAGACCCTGAGCGCCTGAGACACGCCTCAGAAGAATCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS TCA 72 bp TGGCTGCCTAATCGAGGTTTCTTCTCTGAAGGGCCTTaGAGAGCTTTGCTCCTGGCGGCAACTTGGCGGCCT +
Preference number: 6 (lower is better)
Translates to: WLPNRGFFSEGP*RALLLAATWRP
Trigger: AGGCCGCCAAGTTGCCGCCAGGAGCAAAGCTCTTCAAGGCCCTTCAGAGAAGAAACCTCGATTAGGCAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS GCA 72 bp GCGTGTCTCAGGCGCTCAGGGTCTGCTCTCTTGAACTaGTTCATCCGTTGCAGAACCAGCTCTGAGACTCTG +
Preference number: 6 (lower is better)
Translates to: ACLRRSGSALLN*FIRCRTSSETL
Trigger: CAGAGTCTCAGAGCTGGTTCTGCAACGGATGAAGCAGTTCAAGAGAGCAGACCCTGAGCGCCTGAGACACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS CAA 72 bp TCTGAGGCGTGTCTCAGGCGCTCAGGGTCTGCTCTCTaGAACTGCTTCATCCGTTGCAGAACCAGCTCTGAG +
Preference number: 6 (lower is better)
Translates to: SEACLRRSGSAL*NCFIRCRTSSE
Trigger: CTCAGAGCTGGTTCTGCAACGGATGAAGCAGTTCAAGAGAGCAGACCCTGAGCGCCTGAGACACGCCTCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS TCA 72 bp GGACCCACTTCCATCCTCACCGCACACTGCTTCAAGTaGCTGATTCGGCTCTTGGTGGTGAGGAACGGTTTC +
Preference number: 6 (lower is better)
Translates to: GPTSILTAHCFK*LIRLLVVRNGF
Trigger: GAAACCGTTCCTCACCACCAAGAGCCGAATCAGTCACTTGAAGCAGTGTGCGGTGAGGATGGAAGTGGGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040790.14
ENSMUST00000156542.8
ENSMUST00000165830.2
CDS CCA 72 bp GTTTCTTCTCTGAAGGGCCTTGAAGAGCTTTGCTCCTaGCGGCAACTTGGCGGCCTTCTTTCCGTTTGCCTC +
Preference number: 6 (lower is better)
Translates to: VSSLKGLEELCS*RQLGGLLSVCL
Trigger: GAGGCAAACGGAAAGAAGGCCGCCAAGTTGCCGCCAGGAGCAAAGCTCTTCAAGGCCCTTCAGAGAAGAAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS CCA 72 bp GACTTGGGTGCCCCTTGCTTTGTAGTCCTAGGGGTCTaGCTGCCTAATCGAGGTTTCTTCTCTGAAGGGCCT +
Preference number: 6 (lower is better)
Translates to: DLGAPCFVVLGV*LPNRGFFSEGP
Trigger: AGGCCCTTCAGAGAAGAAACCTCGATTAGGCAGCCAGACCCCTAGGACTACAAAGCAAGGGGCACCCAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS GCA 72 bp ATCGAGGTTTCTTCTCTGAAGGGCCTTGAAGAGCTTTaGTCCTGGCGGCAACTTGGCGGCCTTCTTTCCGTT +
Preference number: 6 (lower is better)
Translates to: IEVSSLKGLEEL*SWRQLGGLLSV
Trigger: AACGGAAAGAAGGCCGCCAAGTTGCCGCCAGGAGCAAAGCTCTTCAAGGCCCTTCAGAGAAGAAACCTCGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165830.2
ENSMUST00000171762.2
CDS GCA 72 bp GCTGGGAGTTGCCATTGGGAGCACTCTCTGTCTGAATaGTCTGTGCTCTCTCACACAACACTGGCTGATCTG +
Preference number: 6 (lower is better)
Translates to: AGSCHWEHSLSE*SVLSHTTLADL
Trigger: CAGATCAGCCAGTGTTGTGTGAGAGAGCACAGAGCATTCAGACAGAGAGTGCTCCCAATGGCAACTCCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165830.2
CDS CAA 90 bp GTGTGGCCAGAGGCCTTCTGCCTCGTCCTCTCTCCTGATGCTTCTTaGGTCCCATTTCTTTTCACCCTTTGGAAAAAGCTGGCACAGAGT +
Preference number: 6 (lower is better)
Translates to: VWPEAFCLVLSPDAS*VPFLFTLWKKLAQS
Trigger: ACTCTGTGCCAGCTTTTTCCAAAGGGTGAAAAGAAATGGGACCAAAGAAGCATCAGGAGAGAGGACGAGGCAGAAGGCCTCTGGCCACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171762.2
CDS TCA 72 bp TCTCTTGAACTGCTTCATCCGTTGCAGAACCAGCTCTaGGACTCTGGGTTTGGAGGGACTTGGTACACCAGT +
Preference number: 6 (lower is better)
Translates to: SLELLHPLQNQL*DSGFGGTWYTS
Trigger: ACTGGTGTACCAAGTCCCTCCAAACCCAGAGTCTCAGAGCTGGTTCTGCAACGGATGAAGCAGTTCAAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS CAA 72 bp TTCATCCGTTGCAGAACCAGCTCTGAGACTCTGGGTTaGGAGGGACTTGGTACACCAGTTGTCGTGAAACAG +
Preference number: 6 (lower is better)
Translates to: FIRCRTSSETLG*EGLGTPVVVKQ
Trigger: CTGTTTCACGACAACTGGTGTACCAAGTCCCTCCAAACCCAGAGTCTCAGAGCTGGTTCTGCAACGGATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS CAA 90 bp TTGAACTGCTTCATCCGTTGCAGAACCAGCTCTGAGACTCTGGGTTaGGAGGGACTTGGTACACCAGTTGTCGTGAAACAGGAAGGAAGA +
Preference number: 6 (lower is better)
Translates to: LNCFIRCRTSSETLG*EGLGTPVVVKQEGR
Trigger: TCTTCCTTCCTGTTTCACGACAACTGGTGTACCAAGTCCCTCCAAACCCAGAGTCTCAGAGCTGGTTCTGCAACGGATGAAGCAGTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS GCA 72 bp GCCTTCTCTGCCTCATCTAGGCATCTGTTCACATGTTaGTCCCTCCGGGTTACATTCATTGCTGAGAGGTTT +
Preference number: 6 (lower is better)
Translates to: AFSASSRHLFTC*SLRVTFIAERF
Trigger: AAACCTCTCAGCAATGAATGTAACCCGGAGGGAGCAACATGTGAACAGATGCCTAGATGAGGCAGAGAAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS CCA 72 bp ATCAAGTTTATACTCATTTTCTCCCACTGTCTCCTCTaGAGGGCTCCTTGGGACATCGTCTCCCAGTGCAGT +
Preference number: 6 (lower is better)
Translates to: IKFILIFSHCLL*RAPWDIVSQCS
Trigger: ACTGCACTGGGAGACGATGTCCCAAGGAGCCCTCCAGAGGAGACAGTGGGAGAAAATGAGTATAAACTTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS CAA 90 bp CATCTAGGCATCTGTTCACATGTTGCTCCCTCCGGGTTACATTCATaGCTGAGAGGTTTTTCTGACACATTTGACAGAAGAACAACCCCT +
Preference number: 6 (lower is better)
Translates to: HLGICSHVAPSGLHS*LRGFSDTFDRRTTP
Trigger: AGGGGTTGTTCTTCTGTCAAATGTGTCAGAAAAACCTCTCAGCAATGAATGTAACCCGGAGGGAGCAACATGTGAACAGATGCCTAGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS TCA 72 bp GTTCACATGTTGCTCCCTCCGGGTTACATTCATTGCTaGGAGGTTTTTCTGACACATTTGACAGAAGAACAA +
Preference number: 6 (lower is better)
Translates to: VHMLLPPGYIHC*EVFLTHLTEEQ
Trigger: TTGTTCTTCTGTCAAATGTGTCAGAAAAACCTCTCAGCAATGAATGTAACCCGGAGGGAGCAACATGTGAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2
CDS CAA 72 bp ATCTGTTCACATGTTGCTCCCTCCGGGTTACATTCATaGCTGAGAGGTTTTTCTGACACATTTGACAGAAGA +
Preference number: 6 (lower is better)
Translates to: ICSHVAPSGLHS*LRGFSDTFDRR
Trigger: TCTTCTGTCAAATGTGTCAGAAAAACCTCTCAGCAATGAATGTAACCCGGAGGGAGCAACATGTGAACAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040790.14
ENSMUST00000165830.2