RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLTM (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032212

Ensembl transcript IDs: ENSMUST00000049263.9, ENSMUST00000213808.2, ENSMUST00000216816.2, ENSMUST00000217593.2

Found 300 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATGGTAGCTAGGCCCCTGAGAGGGTGGGCCATGCCACTCTTTCCTTaGTCCACTTGTGTCCCGTCCATGACGTTCCACGACATGTCGTTC +
Preference number: 1 (lower is better)
Translates to: MVARPLRGWAMPLFP*STCVPSMTFHDMSF
Trigger: GAACGACATGTCGTGGAACGTCATGGACGGGACACAAGTGGACCAAGGAAAGAGTGGCATGGCCCACCCTCTCAGGGGCCTAGCTACCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR TCA 90 bp ACTGCACAGATGCAGTGTCAGGAAACCTGGCCCGTTCTCGGTGACTaGAGTCAAGGAACCTGCTCTGTTGACGATAGTCAGACCCATGGC +
Preference number: 1 (lower is better)
Translates to: TAQMQCQETWPVLGD*SQGTCSVDDSQTHG
Trigger: GCCATGGGTCTGACTATCGTCAACAGAGCAGGTTCCTTGACTTCAGTCACCGAGAACGGGCCAGGTTTCCTGACACTGCATCTGTGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR GCA 90 bp CAATCCTGTTCACTGGGGACGCAGTGCTTGAGTGTTGGGTTATCATaGCTGCTCCTGCTCGGCCATCACCCATTCGTCTTGTGTCATGGT +
Preference number: 1 (lower is better)
Translates to: QSCSLGTQCLSVGLS*LLLLGHHPFVLCHG
Trigger: ACCATGACACAAGACGAATGGGTGATGGCCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAACAGGATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR TCA 90 bp GTTACCACTCATCTGTACAATCCTGTTCACTGGGGACGCAGTGCTTaGGTGTTGGGTTATCATGCCTGCTCCTGCTCGGCCATCACCCAT +
Preference number: 1 (lower is better)
Translates to: VTTHLYNPVHWGRSA*VLGYHACSCSAITH
Trigger: ATGGGTGATGGCCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAACAGGATTGTACAGATGAGTGGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR GCA 90 bp AGGAGTTACCACTCATCTGTACAATCCTGTTCACTGGGGACGCAGTaGTTGAGTGTTGGGTTATCATGCCTGCTCCTGCTCGGCCATCAC +
Preference number: 1 (lower is better)
Translates to: RSYHSSVQSCSLGTQ*LSVGLSCLLLLGHH
Trigger: GTGATGGCCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAACAGGATTGTACAGATGAGTGGTAACTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR CCA 90 bp CTCATCTGTACAATCCTGTTCACTGGGGACGCAGTGCTTGAGTGTTaGGTTATCATGCCTGCTCCTGCTCGGCCATCACCCATTCGTCTT +
Preference number: 1 (lower is better)
Translates to: LICTILFTGDAVLEC*VIMPAPARPSPIRL
Trigger: AAGACGAATGGGTGATGGCCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAACAGGATTGTACAGATGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR TCA 90 bp GTGTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTaGCTCCCGTTTCTCTGTGGACATATTCGCTTCGCTTTTCCAGGA +
Preference number: 1 (lower is better)
Translates to: VSRDFSPRSFWPFNS*LPFLCGHIRFAFPG
Trigger: TCCTGGAAAAGCGAAGCGAATATGTCCACAGAGAAACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR TCA 90 bp CTCTGTGCGATGGAGATGTGCAACACATCTGGACACTTCTGTGCTTaGAGACATGGTTACGATGCCATAGCATTTTGCCCCAGGACTTCG +
Preference number: 1 (lower is better)
Translates to: LCAMEMCNTSGHFCA*RHGYDAIAFCPRTS
Trigger: CGAAGTCCTGGGGCAAAATGCTATGGCATCGTAACCATGTCTTCAAGCACAGAAGTGTCCAGATGTGTTGCACATCTCCATCGCACAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR GCA 90 bp GTTCGGGTTCATCTCATAATCCTTGGCTTCCTTCTCCGGGCTCTGTaGAATGGCGTCCTGCACATCTTTTGGCTTACTTGCTTCAGAATC +
Preference number: 1 (lower is better)
Translates to: VRVHLIILGFLLRAL*NGVLHIFWLTCFRI
Trigger: GATTCTGAAGCAAGTAAGCCAAAAGATGTGCAGGACGCCATTGCACAGAGCCCGGAGAAGGAAGCCAAGGATTATGAGATGAACCCGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR CCA 90 bp AGGAGGTCATCACCATCAAAATCCAGAGTGATGGCATCTTCAGCCTaGATTGTGACCGAGATGTTGTCATCCTCAGCTTCTTTCCCAGTC +
Preference number: 1 (lower is better)
Translates to: RRSSPSKSRVMASSA*IVTEMLSSSASFPV
Trigger: GACTGGGAAAGAAGCTGAGGATGACAACATCTCGGTCACAATCCAGGCTGAAGATGCCATCACTCTGGATTTTGATGGTGATGACCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR CCA 90 bp CTTCCTTCTTACCATCTTTATGGTTCGGGTTCATCTCATAATCCTTaGCTTCCTTCTCCGGGCTCTGTGCAATGGCGTCCTGCACATCTT +
Preference number: 1 (lower is better)
Translates to: LPSYHLYGSGSSHNP*LPSPGSVQWRPAHL
Trigger: AAGATGTGCAGGACGCCATTGCACAGAGCCCGGAGAAGGAAGCCAAGGATTATGAGATGAACCCGAACCATAAAGATGGTAAGAAGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR CCA 90 bp GTTTTTAGGGTACCTTTCAAAACTTGGCTCTTCTCTTCGGGCTGCTaGTCTCGGTTTCTTTCCTTCACTTTGACCAACAAACCGTTCCCG +
Preference number: 1 (lower is better)
Translates to: VFRVPFKTWLFSSGC*SRFLSFTLTNKPFP
Trigger: CGGGAACGGTTTGTTGGTCAAAGTGAAGGAAAGAAACCGAGACCAGCAGCCCGAAGAGAAGAGCCAAGTTTTGAAAGGTACCCTAAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR CCA 90 bp GATGGAGATGTGCAACACATCTGGACACTTCTGTGCTTGAAGACATaGTTACGATGCCATAGCATTTTGCCCCAGGACTTCGAGCATTTG +
Preference number: 1 (lower is better)
Translates to: DGDVQHIWTLLCLKT*LRCHSILPQDFEHL
Trigger: CAAATGCTCGAAGTCCTGGGGCAAAATGCTATGGCATCGTAACCATGTCTTCAAGCACAGAAGTGTCCAGATGTGTTGCACATCTCCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR GCA 90 bp ATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTaGCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCA +
Preference number: 1 (lower is better)
Translates to: MKPLPFSCKPLMFTQ*QTEQPCANPFKWVS
Trigger: TGAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
3UTR GCA 90 bp GAAGTTTTTAGGGTACCTTTCAAAACTTGGCTCTTCTCTTCGGGCTaGTGGTCTCGGTTTCTTTCCTTCACTTTGACCAACAAACCGTTC +
Preference number: 1 (lower is better)
Translates to: EVFRVPFKTWLFSSG*WSRFLSFTLTNKPF
Trigger: GAACGGTTTGTTGGTCAAAGTGAAGGAAAGAAACCGAGACCAGCAGCCCGAAGAGAAGAGCCAAGTTTTGAAAGGTACCCTAAAAACTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR CCA 90 bp TTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATaGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTA +
Preference number: 1 (lower is better)
Translates to: FTQCQTEQPCANPFK*VSVLQEKVEWYTKL
Trigger: TAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
3UTR GCA 90 bp GAAAAATTAGTCTTACTTACTTTCTCCACAGAAATCAGTTGTCCATaGAGCTCTGTGCGATGGAGATGTGCAACACATCTGGACACTTCT +
Preference number: 1 (lower is better)
Translates to: EKLVLLTFSTEISCP*SSVRWRCATHLDTS
Trigger: AGAAGTGTCCAGATGTGTTGCACATCTCCATCGCACAGAGCTGCATGGACAACTGATTTCTGTGGAGAAAGTAAGTAAGACTAATTTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR CCA 90 bp TCTGGCTTCCTTCTCGACAGGCTCACCCTTCACGGAGTCTTCCTTCTTACCATCCCGGGCTCTGTGCAATaGCGTCCTGCACATCTTTTG +
Preference number: 2 (lower is better)
Translates to: SGFLLDRLTLHGVFLLTIPGSVQ*RPAHLL
Trigger: CAAAAGATGTGCAGGACGCCATTGCACAGAGCCCGG...GATGGTAAGAAGGAAGACTCCGTGAAGGGTGAGCCTGTCGAGAAGGAAGCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR CAA 90 bp AGTTACCACTCATCTGTACAATCCTGTTCACTGGGGACGCAGTGCTaGAGTGTTGGGTTATCATGCCTGCTCCTGCTCGGCCATCACCCA +
Preference number: 2 (lower is better)
Translates to: SYHSSVQSCSLGTQC*SVGLSCLLLLGHHP
Trigger: TGGGTGATGGCCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAACAGGATTGTACAGATGAGTGGTAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR TCA 90 bp CTTGGCTTCCTTCTCCGGGCTCTGTGCAATGGCGTCCTGCACATCTTTTGGCTTCTTCAGCCTGGATTGTaGCCGAGATGTTGTCATCCT +
Preference number: 2 (lower is better)
Translates to: LGFLLRALCNGVLHIFWLLQPGL*PRCCHP
Trigger: AGGATGACAACATCTCGGTCACAATCCAGGCTGAAG...AAGCCAAAAGATGTGCAGGACGCCATTGCACAGAGCCCGGAGAAGGAAGCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR GCA 90 bp TTCACTGGGGACGCAGTGCTTGAGTGTTGGGTTATCATGCCTGCTCCTGCTCGGCTTTCAAAGGATGACTaGACAGATGCAGTGTCAGGA +
Preference number: 2 (lower is better)
Translates to: FTGDAVLECWVIMPAPARLSKDD*TDAVSG
Trigger: TCCTGACACTGCATCTGTGCAGTCATCCTTTGAAAG...CCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR CCA 90 bp GGGTTATCATGCCTGCTCCTGCTCGGCCATCACCCATTCGTCTTGTGTCATGGTGTACCTTTCAAAACTTaGCTCTTCTCTTCGGGCTGC +
Preference number: 2 (lower is better)
Translates to: GLSCLLLLGHHPFVLCHGVPFKT*LFSSGC
Trigger: GCAGCCCGAAGAGAAGAGCCAAGTTTTGAAAGGTAC...ACCATGACACAAGACGAATGGGTGATGGCCGAGCAGGAGCAGGCATGATAACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR TCA 90 bp TCTGGCTTCCTTCTCGACAGGCTCACCCTTCACGGAGTCTTCCTTCTTACCATCCATCAAAATCCAGAGTaGTGGCATCTTCAGCCTGGA +
Preference number: 2 (lower is better)
Translates to: SGFLLDRLTLHGVFLLTIHQNPE*WHLQPG
Trigger: TCCAGGCTGAAGATGCCATCACTCTGGATTTTGATG...GATGGTAAGAAGGAAGACTCCGTGAAGGGTGAGCCTGTCGAGAAGGAAGCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR GCA 90 bp ATTATCTTGAAGCCACAGCAGGAAGCTTGCGTTAAAATCGCCGTGGAGGTCCACAGTGTTGGGTTATCATaGCTGCTCCTGCTCGGCCAT +
Preference number: 2 (lower is better)
Translates to: IILKPQQEACVKIAVEVHSVGLS*LLLLGH
Trigger: ATGGCCGAGCAGGAGCAGGCATGATAACCCAACACT...GTGGACCTCCACGGCGATTTTAACGCAAGCTTCCTGCTGTGGCTTCAAGATAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR CAA 90 bp GCTCTGTGCGATGGAGATGTGCAACACATCTGGACACTTCTGTGCTaGAAGACATGGTTACGATGCCATAGCATTTTGCCCCAGGACTTC +
Preference number: 2 (lower is better)
Translates to: ALCDGDVQHIWTLLC*KTWLRCHSILPQDF
Trigger: GAAGTCCTGGGGCAAAATGCTATGGCATCGTAACCATGTCTTCAAGCACAGAAGTGTCCAGATGTGTTGCACATCTCCATCGCACAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR TCA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTTCCTCTGTCAGCAATaGCTCCTCGCTCTCCCTCTC +
Preference number: 2 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVFLCQQ*LLALPL
Trigger: GAGAGGGAGAGCGAGGAGTCATTGCTGACAGAGGAA...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR GCA 90 bp ACTTGTGTCCCGTCCATGACGTTCCACGACATGTCGTTCTTCAGGGTAGTGCTGCTCATGTTCACACAGTaGCAAACAGAACAGCCTTGT +
Preference number: 2 (lower is better)
Translates to: TCVPSMTFHDMSFFRVVLLMFTQ*QTEQPC
Trigger: ACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAG...CAGCACTACCCTGAAGAACGACATGTCGTGGAACGTCATGGACGGGACACAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR TCA 90 bp GGGTTATCATGCCTGCTCCTGCTCGGCCATCACCCATTCGTCTTGTGTCATGGTCTCAATAAATTATCTTaGAGCCACAGCAGGAAGCTT +
Preference number: 2 (lower is better)
Translates to: GLSCLLLLGHHPFVLCHGLNKLS*SHSRKL
Trigger: AAGCTTCCTGCTGTGGCTTCAAGATAATTTATTGAG...ACCATGACACAAGACGAATGGGTGATGGCCGAGCAGGAGCAGGCATGATAACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR TCA 90 bp CTTAGCACTTTCTCTGGCTTCCTTCTCGACAGGCTCACCCTTCACGGAGTCTTCCTTCCTCACCATCCTTaGCAAAAGAATCATCTTCCA +
Preference number: 2 (lower is better)
Translates to: LSTFSGFLLDRLTLHGVFLPHHP*QKNHLP
Trigger: TGGAAGATGATTCTTTTGTCAAGGATGGTGAGGAAG...GAAGACTCCGTGAAGGGTGAGCCTGTCGAGAAGGAAGCCAGAGAAAGTGCTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR GCA 90 bp CGTGGAGGTCCACTCTTAAACGGCTTAAACCCCGAGCTGCTTCCTCTTGGCAAGTCAAATGGGTCTCAGTaGTGCAAGAAAAGGTTGAAT +
Preference number: 2 (lower is better)
Translates to: RGGPLLNGLNPELLPLGKSNGSQ*CKKRLN
Trigger: ATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA...CTTGCCAAGAGGAAGCAGCTCGGGGTTTAAGCCGTTTAAGAGTGGACCTCCACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR GCA 90 bp TGCAGCTCTGTGCGATGGAGATGTGCAACACATCTGGACACTTCTGTGCTTGAAGATGCCATAGCATTTTaGCCCAGGACTTCGAGCATT +
Preference number: 2 (lower is better)
Translates to: CSSVRWRCATHLDTSVLEDAIAF*PRTSSI
Trigger: AATGCTCGAAGTCCTGGGGCAAAATGCTATGGCATC...TTCAAGCACAGAAGTGTCCAGATGTGTTGCACATCTCCATCGCACAGAGCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR CAA 90 bp AAATCCAGAGTGATGGCATCTTCAGCCTGGATTGTGACCGAGATGTaGTCATCCTCAGCTTCTTTCCCAGTCGCATTAGCTTCCATCTCT +
Preference number: 2 (lower is better)
Translates to: KSRVMASSAWIVTEM*SSSASFPVALASIS
Trigger: AGAGATGGAAGCTAATGCGACTGGGAAAGAAGCTGAGGATGACAACATCTCGGTCACAATCCAGGCTGAAGATGCCATCACTCTGGATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR TCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACGAGCTACGCTGCAAATaGAACCACTACCATTCAGCT +
Preference number: 2 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDELRCK*NHYHSA
Trigger: AGCTGAATGGTAGTGGTTTCATTTGCAGCGTAGCTC...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
3UTR-3UTR GCA 90 bp ATTATCTTGAAGCCACAGCAGGAAGCTTGCGTTAAAATCGCCGTGGAGGTCCACCCACTACCATTCAGCTaGAAACCACTCATGTTCACA +
Preference number: 2 (lower is better)
Translates to: IILKPQQEACVKIAVEVHPLPFS*KPLMFT
Trigger: TGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGG...GTGGACCTCCACGGCGATTTTAACGCAAGCTTCCTGCTGTGGCTTCAAGATAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR GCA 90 bp GCTTCCTTCTCGACAGGCTCACCCTTCACGGAGTCTTCCTTCTTACCATCTTTATGTGCAATGGCGTCCTaGACATCTTTTGGCTTACTT +
Preference number: 2 (lower is better)
Translates to: ASFSTGSPFTESSFLPSLCAMAS*TSFGLL
Trigger: AAGTAAGCCAAAAGATGTGCAGGACGCCATTGCACA...TAAAGATGGTAAGAAGGAAGACTCCGTGAAGGGTGAGCCTGTCGAGAAGGAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR CCA 90 bp GTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTGACTCCCGTTTTCATTTCTTGGTGGTaGAGGCTCATTTCTTCTGGA +
Preference number: 2 (lower is better)
Translates to: VQRLLSQIFLAFQLVTPVFISWW*RLISSG
Trigger: TCCAGAAGAAATGAGCCTCCACCACCAAGAAATGAA...AACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR TCA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCGAGCTACGCTGCAAATaGAACCACTACCATTCAGCT +
Preference number: 2 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVELRCK*NHYHSA
Trigger: AGCTGAATGGTAGTGGTTTCATTTGCAGCGTAGCTC...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
3UTR-3UTR GCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACCTCATGTTCACACAGTaGCAAACAGAACAGCCTTGT +
Preference number: 2 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDLMFTQ*QTEQPC
Trigger: ACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAG...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
3UTR-3UTR CCA 90 bp TGCAGCTCTGTGCGATGGAGATGTGCAACACATCTGGACACTTCTGTGCTTGAAGTCCTGCACATCTTTTaGCTTACTTGCTTCAGAATC +
Preference number: 2 (lower is better)
Translates to: CSSVRWRCATHLDTSVLEVLHIF*LTCFRI
Trigger: GATTCTGAAGCAAGTAAGCCAAAAGATGTGCAGGAC...TTCAAGCACAGAAGTGTCCAGATGTGTTGCACATCTCCATCGCACAGAGCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR GCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACAATGGGTCTCAGTGCTaGAAGAAAAGGTTGAATGGT +
Preference number: 2 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDNGSQC*KKRLNG
Trigger: ACCATTCAACCTTTTCTTGCAGCACTGAGACCCATT...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
3UTR-3UTR TCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACCTCAATAAATTATCTTaGAGCCACAGCAGGAAGCTT +
Preference number: 2 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDLNKLS*SHSRKL
Trigger: AAGCTTCCTGCTGTGGCTTCAAGATAATTTATTGAG...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
3UTR-3UTR GCA 90 bp TGCTTGAAGACATGGTTACGATGCCATAGCATTTTGCCCCAGGACTTCGAGCATGCCATCACCAGAACCTaGTATATCTTTCTCATTTTC +
Preference number: 2 (lower is better)
Translates to: CLKTWLRCHSILPQDFEHAITRT*YIFLIF
Trigger: GAAAATGAGAAAGATATAGCAGGTTCTGGTGATGGC...ATGCTCGAAGTCCTGGGGCAAAATGCTATGGCATCGTAACCATGTCTTCAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR GCA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCAAATGGGTCTCAGTaGTGCAAGAAAAGGTTGAAT +
Preference number: 2 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVSNGSQ*CKKRLN
Trigger: ATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
3UTR-3UTR GCA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCCATAATACTCCGAAATaGAGGGAACAATCTTATTCT +
Preference number: 2 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVHNTPK*REQSYS
Trigger: AGAATAAGATTGTTCCCTGCATTTCGGAGTATTATG...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
3UTR-3UTR TCA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTCTCAATAAATTATCTTaGAGCCACAGCAGGAAGCTT +
Preference number: 2 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLLNKLS*SHSRKL
Trigger: AAGCTTCCTGCTGTGGCTTCAAGATAATTTATTGAG...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
3UTR TCA 72 bp CAGGGTAGTGCTGTGTTCCGCTTCCTCTGTCAGCAATaGCTCCTCGCTCTCCCTCTCGGGTTCCATAGCCTG +
Preference number: 3 (lower is better)
Translates to: QGSAVFRFLCQQ*LLALPLGFHSL
Trigger: CAGGCTATGGAACCCGAGAGGGAGAGCGAGGAGTCATTGCTGACAGAGGAAGCGGAACACAGCACTACCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR GCA 72 bp TCACTGGGGACGCAGTGCTTGAGTGTTGGGTTATCATaGCTGCTCCTGCTCGGCCATCACCCATTCGTCTTG +
Preference number: 3 (lower is better)
Translates to: SLGTQCLSVGLS*LLLLGHHPFVL
Trigger: CAAGACGAATGGGTGATGGCCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR CCA 72 bp ACAATCCTGTTCACTGGGGACGCAGTGCTTGAGTGTTaGGTTATCATGCCTGCTCCTGCTCGGCCATCACCC +
Preference number: 3 (lower is better)
Translates to: TILFTGDAVLEC*VIMPAPARPSP
Trigger: GGGTGATGGCCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAACAGGATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR TCA 72 bp CATCTGTACAATCCTGTTCACTGGGGACGCAGTGCTTaGGTGTTGGGTTATCATGCCTGCTCCTGCTCGGCC +
Preference number: 3 (lower is better)
Translates to: HLYNPVHWGRSA*VLGYHACSCSA
Trigger: GGCCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAACAGGATTGTACAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR CAA 90 bp GGGGACGCAGTGCTTGAGTGTTGGGTTATCATGCCTGCTCCTGCTCGGCCATCACCAAACAGAACAGCCTaGTGCCAATCCTTTCAAATG +
Preference number: 3 (lower is better)
Translates to: GDAVLECWVIMPAPARPSPNRTA*CQSFQM
Trigger: CATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGG...TGATGGCCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR CAA 90 bp TCCTCTTGGCAAGGAGTTACCACTCATCTGTACAATCCTGTTCACTGGGGACGCGTTGGTCTAGAAGGATaGGGCACAGTCTCTCGAGGG +
Preference number: 3 (lower is better)
Translates to: SSWQGVTTHLYNPVHWGRVGLEG*GTVSRG
Trigger: CCCTCGAGAGACTGTGCCCAATCCTTCTAGACCAAC...GCGTCCCCAGTGAACAGGATTGTACAGATGAGTGGTAACTCCTTGCCAAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR TCA 72 bp ATGCAGTGTCAGGAAACCTGGCCCGTTCTCGGTGACTaGAGTCAAGGAACCTGCTCTGTTGACGATAGTCAG +
Preference number: 3 (lower is better)
Translates to: MQCQETWPVLGD*SQGTCSVDDSQ
Trigger: CTGACTATCGTCAACAGAGCAGGTTCCTTGACTTCAGTCACCGAGAACGGGCCAGGTTTCCTGACACTGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR GCA 72 bp CACTCATCTGTACAATCCTGTTCACTGGGGACGCAGTaGTTGAGTGTTGGGTTATCATGCCTGCTCCTGCTC +
Preference number: 3 (lower is better)
Translates to: HSSVQSCSLGTQ*LSVGLSCLLLL
Trigger: GAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAACAGGATTGTACAGATGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR GCA 72 bp CATCTCATAATCCTTGGCTTCCTTCTCCGGGCTCTGTaGAATGGCGTCCTGCACATCTTTTGGCTTACTTGC +
Preference number: 3 (lower is better)
Translates to: HLIILGFLLRAL*NGVLHIFWLTC
Trigger: GCAAGTAAGCCAAAAGATGTGCAGGACGCCATTGCACAGAGCCCGGAGAAGGAAGCCAAGGATTATGAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR CAA 90 bp ACTTGTGTCCCGTCCATGACGTTCCACGACATGTCGTTCTTCAGGGTAGTGCTGTTTCTTTCCTTCACTTaGACCAACAAACCGTTCCCG +
Preference number: 3 (lower is better)
Translates to: TCVPSMTFHDMSFFRVVLFLSFT*TNKPFP
Trigger: CGGGAACGGTTTGTTGGTCAAAGTGAAGGAAAGAAA...CAGCACTACCCTGAAGAACGACATGTCGTGGAACGTCATGGACGGGACACAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR CAA 90 bp TCTGGCCTTTCAACTCGTGACTCCCGTTTCTCTGTGGACATATTCGCTTCGCTTGGTACCTTTCAAAACTaGGCTCTTCTCTTCGGGCTG +
Preference number: 3 (lower is better)
Translates to: SGLSTRDSRFSVDIFASLGTFQN*ALLFGL
Trigger: CAGCCCGAAGAGAAGAGCCAAGTTTTGAAAGGTACC...AAGCGAAGCGAATATGTCCACAGAGAAACGGGAGTCACGAGTTGAAAGGCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR CAA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCCTGGGGACGCAGTGCTaGAGTGTTGGGTTATCATGC +
Preference number: 3 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVLGTQC*SVGLSC
Trigger: GCATGATAACCCAACACTCAAGCACTGCGTCCCCAG...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR CAA 90 bp CTTAGCACTTTCTCTGGCTTCCTTCTCGACAGGCTCACCCTTCACGGAGTCTTCATTGTGACCGAGATGTaGTCATCCTCAGCTTCTTTC +
Preference number: 3 (lower is better)
Translates to: LSTFSGFLLDRLTLHGVFIVTEM*SSSASF
Trigger: GAAAGAAGCTGAGGATGACAACATCTCGGTCACAAT...GAAGACTCCGTGAAGGGTGAGCCTGTCGAGAAGGAAGCCAGAGAAAGTGCTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR CAA 90 bp TCTGTGCGATGGAGATGTGCAACACATCTGGACACTTCTGTGCTTGAAGACATGCTGACCCAGATGTTCTaGGTTGAGCTTCCACTGCTC +
Preference number: 3 (lower is better)
Translates to: SVRWRCATHLDTSVLEDMLTQMF*VELPLL
Trigger: GAGCAGTGGAAGCTCAACCAAGAACATCTGGGTCAG...CATGTCTTCAAGCACAGAAGTGTCCAGATGTGTTGCACATCTCCATCGCACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR TCA 72 bp GACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTaGCTCCCGTTTCTCTGTGGACATATTCGCTTCGCT +
Preference number: 3 (lower is better)
Translates to: DFSPRSFWPFNS*LPFLCGHIRFA
Trigger: AGCGAAGCGAATATGTCCACAGAGAAACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR GCA 72 bp TTGGCTTCCTTCTCCGGGCTCTGTGCAATGGCGTCCTaGACATCTTTTGGCTTACTTGCTTCAGAATCTGTA +
Preference number: 3 (lower is better)
Translates to: LASFSGLCAMAS*TSFGLLASESV
Trigger: TACAGATTCTGAAGCAAGTAAGCCAAAAGATGTGCAGGACGCCATTGCACAGAGCCCGGAGAAGGAAGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR CCA 72 bp TACCATCTTTATGGTTCGGGTTCATCTCATAATCCTTaGCTTCCTTCTCCGGGCTCTGTGCAATGGCGTCCT +
Preference number: 3 (lower is better)
Translates to: YHLYGSGSSHNP*LPSPGSVQWRP
Trigger: AGGACGCCATTGCACAGAGCCCGGAGAAGGAAGCCAAGGATTATGAGATGAACCCGAACCATAAAGATGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR CCA 72 bp CATGCAGCTCTGTGCGATGGAGATGTGCAACACATCTaGACACTTCTGTGCTTGAAGACATGGTTACGATGC +
Preference number: 3 (lower is better)
Translates to: HAALCDGDVQHI*TLLCLKTWLRC
Trigger: GCATCGTAACCATGTCTTCAAGCACAGAAGTGTCCAGATGTGTTGCACATCTCCATCGCACAGAGCTGCATG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR CAA 90 bp CATAATCCTTGGCTTCCTTCTCCGGGCTCTGTGCAATGGCGTCCTGCACATCTTTCTTCCTCACCATCCTaGACAAAAGAATCATCTTCC +
Preference number: 3 (lower is better)
Translates to: HNPWLPSPGSVQWRPAHLSSSPS*TKESSS
Trigger: GGAAGATGATTCTTTTGTCAAGGATGGTGAGGAAGA...AAGATGTGCAGGACGCCATTGCACAGAGCCCGGAGAAGGAAGCCAAGGATTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR GCA 72 bp AGGGTACCTTTCAAAACTTGGCTCTTCTCTTCGGGCTaGTGGTCTCGGTTTCTTTCCTTCACTTTGACCAAC +
Preference number: 3 (lower is better)
Translates to: RVPFKTWLFSSG*WSRFLSFTLTN
Trigger: GTTGGTCAAAGTGAAGGAAAGAAACCGAGACCAGCAGCCCGAAGAGAAGAGCCAAGTTTTGAAAGGTACCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR CCA 72 bp TTTCTGGCCTTTCAACTCGTGACTCCCGTTTCTCTGTaGACATATTCGCTTCGCTTTTCCAGGAAGTTGGTC +
Preference number: 3 (lower is better)
Translates to: FLAFQLVTPVSL*TYSLRFSRKLV
Trigger: GACCAACTTCCTGGAAAAGCGAAGCGAATATGTCCACAGAGAAACGGGAGTCACGAGTTGAAAGGCCAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR CCA 72 bp GTGCAACACATCTGGACACTTCTGTGCTTGAAGACATaGTTACGATGCCATAGCATTTTGCCCCAGGACTTC +
Preference number: 3 (lower is better)
Translates to: VQHIWTLLCLKT*LRCHSILPQDF
Trigger: GAAGTCCTGGGGCAAAATGCTATGGCATCGTAACCATGTCTTCAAGCACAGAAGTGTCCAGATGTGTTGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR CCA 72 bp TCCACAGAAATCAGTTGTCCATGCAGCTCTGTGCGATaGAGATGTGCAACACATCTGGACACTTCTGTGCTT +
Preference number: 3 (lower is better)
Translates to: STEISCPCSSVR*RCATHLDTSVL
Trigger: AAGCACAGAAGTGTCCAGATGTGTTGCACATCTCCATCGCACAGAGCTGCATGGACAACTGATTTCTGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR CAA 90 bp GCTCCCCTCACAGTGTGTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCATGCTGCAAGAAAAGGTaGAATGGTACACAAAACTAT +
Preference number: 3 (lower is better)
Translates to: APLTVCPETSLPDLSGLSCCKKR*NGTQNY
Trigger: ATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCA...TGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGACACACTGTGAGGGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR CAA 90 bp TCATCACCATCAAAATCCAGAGTGATGGCATCTTCAGCCTGGATTGTGACCGAGAGGTTTAGATACTTCTaGTGTGCCATCACCAGAACC +
Preference number: 3 (lower is better)
Translates to: SSPSKSRVMASSAWIVTERFRYF*CAITRT
Trigger: GGTTCTGGTGATGGCACACAAGAAGTATCTAAACCT...CTCGGTCACAATCCAGGCTGAAGATGCCATCACTCTGGATTTTGATGGTGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR TCA 72 bp ATGGAGATGTGCAACACATCTGGACACTTCTGTGCTTaGAGACATGGTTACGATGCCATAGCATTTTGCCCC +
Preference number: 3 (lower is better)
Translates to: MEMCNTSGHFCA*RHGYDAIAFCP
Trigger: GGGGCAAAATGCTATGGCATCGTAACCATGTCTTCAAGCACAGAAGTGTCCAGATGTGTTGCACATCTCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR GCA 72 bp ATCTGGACACTTCTGTGCTTGAAGACATGGTTACGATaGCATAGCATTTTGCCCCAGGACTTCGAGCATTTG +
Preference number: 3 (lower is better)
Translates to: IWTLLCLKTWLR*HSILPQDFEHL
Trigger: CAAATGCTCGAAGTCCTGGGGCAAAATGCTATGGCATCGTAACCATGTCTTCAAGCACAGAAGTGTCCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR CCA 72 bp TCACCATCAAAATCCAGAGTGATGGCATCTTCAGCCTaGATTGTGACCGAGATGTTGTCATCCTCAGCTTCT +
Preference number: 3 (lower is better)
Translates to: SPSKSRVMASSA*IVTEMLSSSAS
Trigger: AGAAGCTGAGGATGACAACATCTCGGTCACAATCCAGGCTGAAGATGCCATCACTCTGGATTTTGATGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR CAA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCCCAAACAGAACAGCCTaGTGCCAATCCTTTCAAATG +
Preference number: 3 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVPNRTA*CQSFQM
Trigger: CATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGG...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
3UTR-3UTR CAA 90 bp CACCCTTCACGGAGTCTTCCTTCTTACCATCTTTATGGTTCGGGTTCATCTCATCGTCCTGCACATCTTTaGGCTTACTTGCTTCAGAAT +
Preference number: 3 (lower is better)
Translates to: HPSRSLPSYHLYGSGSSHRPAHL*AYLLQN
Trigger: ATTCTGAAGCAAGTAAGCCAAAAGATGTGCAGGACG...ATGAGATGAACCCGAACCATAAAGATGGTAAGAAGGAAGACTCCGTGAAGGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR GCA 72 bp CTACCATTCAGCTGCAAACCACTCATGTTCACACAGTaGCAAACAGAACAGCCTTGTGCCAATCCTTTCAAA +
Preference number: 3 (lower is better)
Translates to: LPFSCKPLMFTQ*QTEQPCANPFK
Trigger: TTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
3UTR GCA 72 bp GTCTTACTTACTTTCTCCACAGAAATCAGTTGTCCATaGAGCTCTGTGCGATGGAGATGTGCAACACATCTG +
Preference number: 3 (lower is better)
Translates to: VLLTFSTEISCP*SSVRWRCATHL
Trigger: CAGATGTGTTGCACATCTCCATCGCACAGAGCTGCATGGACAACTGATTTCTGTGGAGAAAGTAAGTAAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR CCA 72 bp TGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATaGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTAC +
Preference number: 3 (lower is better)
Translates to: CQTEQPCANPFK*VSVLQEKVEWY
Trigger: GTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
3UTR CCA 72 bp GTACCTTTCAAAACTTGGCTCTTCTCTTCGGGCTGCTaGTCTCGGTTTCTTTCCTTCACTTTGACCAACAAA +
Preference number: 3 (lower is better)
Translates to: VPFKTWLFSSGC*SRFLSFTLTNK
Trigger: TTTGTTGGTCAAAGTGAAGGAAAGAAACCGAGACCAGCAGCCCGAAGAGAAGAGCCAAGTTTTGAAAGGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR CCA 72 bp GGAATCACTGAAGTTTTTAGGGTACCTTTCAAAACTTaGCTCTTCTCTTCGGGCTGCTGGTCTCGGTTTCTT +
Preference number: 3 (lower is better)
Translates to: GITEVFRVPFKT*LFSSGCWSRFL
Trigger: AAGAAACCGAGACCAGCAGCCCGAAGAGAAGAGCCAAGTTTTGAAAGGTACCCTAAAAACTTCAGTGATTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR-3UTR CAA 90 bp CATTTTGCCCCAGGACTTCGAGCATTTGTAACTACCTTTGCACTTAGAACCTTTCTGCCTGTGCTCCCTTaGTCATCTTTAGATGATGTC +
Preference number: 3 (lower is better)
Translates to: HFAPGLRAFVTTFALRTFLPVLP*SSLDDV
Trigger: GACATCATCTAAAGATGACAAAGGGAGCACAGGCAG...AAAGGTTCTAAGTGCAAAGGTAGTTACAAATGCTCGAAGTCCTGGGGCAAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
3UTR-3UTR CAA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTGCTGCAAGAAAAGGTaGAATGGTACACAAAACTAT +
Preference number: 3 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVCCKKR*NGTQNY
Trigger: ATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCA...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
3UTR-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCATGCTGCAAGAAAAGGTaGAATGGTACACAAAACTAT +
Preference number: 3 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPCCKKR*NGTQNY
Trigger: ATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCA...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp ATCACCCATTCGTCTTGTGTCATGGTAGCTAGGCCCCTGAGAGGGTGGGCCATGGCTGCTGCTGCCTTCTaGGCTCCTCTCTCTCCCGAG +
Preference number: 4 (lower is better)
Translates to: ITHSSCVMVARPLRGWAMAAAAF*APLSPE
Trigger: CTCGGGAGAGAGAGGAGCTCAGAAGGCAGCAGCAGC...CATGGCCCACCCTCTCAGGGGCCTAGCTACCATGACACAAGACGAATGGGTGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp CCCCTGAGAGGGTGGGCCATGCCACTCTTTCCTTGGTCCACTTGTGTCCCGTCCCCGGGCTCTGTGCAATaGCGTCCTGCACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: PLRGWAMPLFPWSTCVPSPGSVQ*RPAHLL
Trigger: CAAAAGATGTGCAGGACGCCATTGCACAGAGCCCGG...GGACGGGACACAAGTGGACCAAGGAAAGAGTGGCATGGCCCACCCTCTCAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
3UTR CAA 72 bp GAGAGGGTGGGCCATGCCACTCTTTCCTTGGTCCACTaGTGTCCCGTCCATGACGTTCCACGACATGTCGTT +
Preference number: 4 (lower is better)
Translates to: ERVGHATLSLVH*CPVHDVPRHVV
Trigger: AACGACATGTCGTGGAACGTCATGGACGGGACACAAGTGGACCAAGGAAAGAGTGGCATGGCCCACCCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCGAGGGTGTCTGGGGTaGGCGACCTCAGGTCGGTCA +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVRGCLG*ATSGRS
Trigger: TGACCGACCTGAGGTCGCTCACCCCAGACACCCTCG...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR TCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGGCTGCTGCTGCCTTCTaGGCTCCTCTCTCTCCCGAG +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVAAAAF*APLSPE
Trigger: CTCGGGAGAGAGAGGAGCTCAGAAGGCAGCAGCAGC...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp CCCCTGAGAGGGTGGGCCATGCCACTCTTTCCTTGGTCCACTTGTGTCCCGTCCCCAATTCACAGTCCTTaGCAAAAGAATCATCTTCCA +
Preference number: 4 (lower is better)
Translates to: PLRGWAMPLFPWSTCVPSPIHSP*QKNHLP
Trigger: TGGAAGATGATTCTTTTGTCAAGGACTGTGAATTGG...GGACGGGACACAAGTGGACCAAGGAAAGAGTGGCATGGCCCACCCTCTCAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAGCTGCTGCTGCCTTCTaGGCTCCTCTCTCTCCCGAG +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPAAAAF*APLSPE
Trigger: CTCGGGAGAGAGAGGAGCTCAGAAGGCAGCAGCAGC...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp GCTCCCCTCACAGTGTGTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCATCCTCTTCAATAGCCTaGTTCAGCCGGGAGACCAGT +
Preference number: 4 (lower is better)
Translates to: APLTVCPETSLPDLSGLSSSSIA*FSRETS
Trigger: ACTGGTCTCCCGGCTGAAGCAGGCTATTGAAGAGGA...TGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGACACACTGTGAGGGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CCCCTGAGAGGGTGGGCCATGCCACTCTTTCCTTGGTCCACTTGTGTCCCGTCCGCCATCACCAGAACCTaGTATATCTTTCTCATTTTC +
Preference number: 4 (lower is better)
Translates to: PLRGWAMPLFPWSTCVPSAITRT*YIFLIF
Trigger: GAAAATGAGAAAGATATAGCAGGTTCTGGTGATGGC...GGACGGGACACAAGTGGACCAAGGAAAGAGTGGCATGGCCCACCCTCTCAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp GGGTTATCATGCCTGCTCCTGCTCGGCCATCACCCATTCGTCTTGTGTCATGGTGACCTTTCTCATATCTaGCCCTTCTTGACGGCCTAC +
Preference number: 4 (lower is better)
Translates to: GLSCLLLLGHHPFVLCHGDLSHI*PFLTAY
Trigger: GTAGGCCGTCAAGAAGGGGCAGATATGAGAAAGGTC...ACCATGACACAAGACGAATGGGTGATGGCCGAGCAGGAGCAGGCATGATAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp TCGCCGTGGAGGTCCACTCTTAAACGGCTTAAACCCCGAGCTGCTTCCTCTTGGTCTTTGCTTCTTCCATaGCCTTTCTCATATCTGCCC +
Preference number: 4 (lower is better)
Translates to: SPWRSTLKRLKPRAASSWSLLLP*PFSYLP
Trigger: GGGCAGATATGAGAAAGGTCATGGAAGAAGCAAAGA...CCAAGAGGAAGCAGCTCGGGGTTTAAGCCGTTTAAGAGTGGACCTCCACGGCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp TCTGGCCTTTCAACTCGTGACTCCCGTTTCTCTGTGGACATATTCGCTTCGCTTCTTTTTCAGGGACTCTaGAGTCTGCCCACTTGGACC +
Preference number: 4 (lower is better)
Translates to: SGLSTRDSRFSVDIFASLLFQGL*SLPTWT
Trigger: GGTCCAAGTGGGCAGACTTCAGAGTCCCTGAAAAAG...AAGCGAAGCGAATATGTCCACAGAGAAACGGGAGTCACGAGTTGAAAGGCCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACTTCCTCTGTCAGCAATaGCTCCTCGCTCTCCCTCTC +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDFLCQQ*LLALPL
Trigger: GAGAGGGAGAGCGAGGAGTCATTGCTGACAGAGGAA...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR TCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACCTTGTGTCCCGTCCATaGCGTTCCACGACATGTCGT +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDLVSRP*RSTTCR
Trigger: ACGACATGTCGTGGAACGTCATGGACGGGACACAAG...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR TCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCTTGTGTCCCGTCCATaGCGTTCCACGACATGTCGT +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVLVSRP*RSTTCR
Trigger: ACGACATGTCGTGGAACGTCATGGACGGGACACAAG...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp GAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACACCACAGAGTCCTCTTCAATAGCCTaGTTCAGCCGGGAGACCAGT +
Preference number: 4 (lower is better)
Translates to: EAQIAFKMEAANTGDTTESSSIA*FSRETS
Trigger: ACTGGTCTCCCGGCTGAAGCAGGCTATTGAAGAGGA...CTCTGTGGTGTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACTTGGGTTATCATGCCTaGTCCTGCTCGGCCATCACC +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDLGYHA*SCSAIT
Trigger: GGTGATGGCCGAGCAGGAGCAGGCATGATAACCCAA...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACCCGGGCTCTGTGCAATaGCGTCCTGCACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDPGSVQ*RPAHLL
Trigger: CAAAAGATGTGCAGGACGCCATTGCACAGAGCCCGG...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR TCA 90 bp GTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTGACTCCCGTTCATCAAAATCCAGAGTaGTGGCATCTTCAGCCTGGA +
Preference number: 4 (lower is better)
Translates to: VQRLLSQIFLAFQLVTPVHQNPE*WHLQPG
Trigger: TCCAGGCTGAAGATGCCATCACTCTGGATTTTGATG...AACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCACCAGATGTTCTTGGTTaGGCTTCCACTGCTCCCACC +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPPDVLG*ASTAPT
Trigger: GGTGGGAGCAGTGGAAGCTCAACCAAGAACATCTGG...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCCCAGATGTTCTTGGTTaGGCTTCCACTGCTCCCACC +
Preference number: 4 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVPDVLG*ASTAPT
Trigger: GGTGGGAGCAGTGGAAGCTCAACCAAGAACATCTGG...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCTTTTTCAGGGACTCTaGAGTCTGCCCACTTGGACC +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVLFQGL*SLPTWT
Trigger: GGTCCAAGTGGGCAGACTTCAGAGTCCCTGAAAAAG...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp TCCTCTTGGCAAGGAGTTACCACTCATCTGTACAATCCTGTTCACTGGGGACGCCTTGACGGCCTACAATaGTCTCCCTTGGTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: SSWQGVTTHLYNPVHWGRLDGLQ*SPLVWF
Trigger: AAACCAAACCAAGGGAGATCATTGTAGGCCGTCAAG...GCGTCCCCAGTGAACAGGATTGTACAGATGAGTGGTAACTCCTTGCCAAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAACGAGGGTGTCTGGGGTaGGCGACCTCAGGTCGGTCA +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYERGCLG*ATSGRS
Trigger: TGACCGACCTGAGGTCGCTCACCCCAGACACCCTCG...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR TCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCTGCGCCGCTCCTTCTaGATTCCACTGCTTGTTTCA +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCLRRSF*IPLLVS
Trigger: TGAAACAAGCAGTGGAATTCAGAAGGAGCGGCGCAG...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp GTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTGACTCCCGTTGATGCCATAGCATTTTaGCCCAGGACTTCGAGCATT +
Preference number: 4 (lower is better)
Translates to: VQRLLSQIFLAFQLVTPVDAIAF*PRTSSI
Trigger: AATGCTCGAAGTCCTGGGGCAAAATGCTATGGCATC...AACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGGTCCATGCAGCTCTGTaGGATGGAGATGTGCAACAC +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVVHAAL*DGDVQH
Trigger: GTGTTGCACATCTCCATCGCACAGAGCTGCATGGAC...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp TCCTCTTGGCAAGGAGTTACCACTCATCTGTACAATCCTGTTCACTGGGGACGCGAAATCAGTTGTCCATaGAGCTCTGTGCGATGGAGA +
Preference number: 4 (lower is better)
Translates to: SSWQGVTTHLYNPVHWGREISCP*SSVRWR
Trigger: TCTCCATCGCACAGAGCTGCATGGACAACTGATTTC...GCGTCCCCAGTGAACAGGATTGTACAGATGAGTGGTAACTCCTTGCCAAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGAGTGTTGGGTTATCATaGCTGCTCCTGCTCGGCCAT +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVSVGLS*LLLLGH
Trigger: ATGGCCGAGCAGGAGCAGGCATGATAACCCAACACT...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACAGTGTTGGGTTATCATaGCTGCTCCTGCTCGGCCAT +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDSVGLS*LLLLGH
Trigger: ATGGCCGAGCAGGAGCAGGCATGATAACCCAACACT...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp GTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTGACTCCCGTTATGGCATCTTCAGCCTaGATTGTGACCGAGATGTTG +
Preference number: 4 (lower is better)
Translates to: VQRLLSQIFLAFQLVTPVMASSA*IVTEML
Trigger: CAACATCTCGGTCACAATCCAGGCTGAAGATGCCAT...AACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCATGCCACTCTTTCCTTaGTCCACTTGTGTCCCGTCC +
Preference number: 4 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLMPLFP*STCVPS
Trigger: GGACGGGACACAAGTGGACCAAGGAAAGAGTGGCAT...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCATGCCACTCTTTCCTTaGTCCACTTGTGTCCCGTCC +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCMPLFP*STCVPS
Trigger: GGACGGGACACAAGTGGACCAAGGAAAGAGTGGCAT...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
3UTR CAA 72 bp GTGATGGCATCTTCAGCCTGGATTGTGACCGAGATGTaGTCATCCTCAGCTTCTTTCCCAGTCGCATTAGCT +
Preference number: 4 (lower is better)
Translates to: VMASSAWIVTEM*SSSASFPVALA
Trigger: AGCTAATGCGACTGGGAAAGAAGCTGAGGATGACAACATCTCGGTCACAATCCAGGCTGAAGATGCCATCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
CDS-3UTR TCA 90 bp GTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTGACTCCCGTTTCTTCCTCACCATCTTaGGCTGTTAGAAAGGTGTCA +
Preference number: 4 (lower is better)
Translates to: VQRLLSQIFLAFQLVTPVSSSPS*AVRKVS
Trigger: TGACACCTTTCTAACAGCTCAAGATGGTGAGGAAGA...AACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCTTCAGCCTGGATTGTaGCCGAGATGTTGTCATCCT +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCLQPGL*PRCCHP
Trigger: AGGATGACAACATCTCGGTCACAATCCAGGCTGAAG...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCATATCTGCCCCTTCTTaGCGGCCTACAATGATCTCC +
Preference number: 4 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLISAPS*RPTMIS
Trigger: GGAGATCATTGTAGGCCGTCAAGAAGGGGCAGATAT...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCATATCTGCCCCTTCTTaGCGGCCTACAATGATCTCC +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCISAPS*RPTMIS
Trigger: GGAGATCATTGTAGGCCGTCAAGAAGGGGCAGATAT...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCATCCTCTTCAATAGCCTaGTTCAGCCGGGAGACCAGT +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPSSSIA*FSRETS
Trigger: ACTGGTCTCCCGGCTGAAGCAGGCTATTGAAGAGGA...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp TCCTCTTGGCAAGGAGTTACCACTCATCTGTACAATCCTGTTCACTGGGGACGCTGTGCAATGGCGTCCTaGACATCTTTTGGCTTACTT +
Preference number: 4 (lower is better)
Translates to: SSWQGVTTHLYNPVHWGRCAMAS*TSFGLL
Trigger: AAGTAAGCCAAAAGATGTGCAGGACGCCATTGCACA...GCGTCCCCAGTGAACAGGATTGTACAGATGAGTGGTAACTCCTTGCCAAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCGTCCATGCAGCTCTGTaGGATGGAGATGTGCAACAC +
Preference number: 4 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVVHAAL*DGDVQH
Trigger: GTGTTGCACATCTCCATCGCACAGAGCTGCATGGAC...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACGACCTTTCTCATATCTaGCCCTTCTTGACGGCCTAC +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDDLSHI*PFLTAY
Trigger: GTAGGCCGTCAAGAAGGGGCAGATATGAGAAAGGTC...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGGACCTTTCTCATATCTaGCCCTTCTTGACGGCCTAC +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVDLSHI*PFLTAY
Trigger: GTAGGCCGTCAAGAAGGGGCAGATATGAGAAAGGTC...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp TCTGGCCTTTCAACTCGTGACTCCCGTTTCTCTGTGGACATATTCGCTTCGCTTTCATCTCATAATCCTTaGCTTCCTTCTCCGGGCTCT +
Preference number: 4 (lower is better)
Translates to: SGLSTRDSRFSVDIFASLSSHNP*LPSPGS
Trigger: AGAGCCCGGAGAAGGAAGCCAAGGATTATGAGATGA...AAGCGAAGCGAATATGTCCACAGAGAAACGGGAGTCACGAGTTGAAAGGCCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCGCAGTGCTTGAGTGTTaGGTTATCATGCCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLAVLEC*VIMPAP
Trigger: AGGAGCAGGCATGATAACCCAACACTCAAGCACTGC...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGGCAGTGCTTGAGTGTTaGGTTATCATGCCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVAVLEC*VIMPAP
Trigger: AGGAGCAGGCATGATAACCCAACACTCAAGCACTGC...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR TCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCACTTCAGCCTGGATTGTaGCCGAGATGTTGTCATCCT +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPLQPGL*PRCCHP
Trigger: AGGATGACAACATCTCGGTCACAATCCAGGCTGAAG...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp GAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACACCACAGAGTGTGCAATGGCGTCCTaGACATCTTTTGGCTTACTT +
Preference number: 4 (lower is better)
Translates to: EAQIAFKMEAANTGDTTECAMAS*TSFGLL
Trigger: AAGTAAGCCAAAAGATGTGCAGGACGCCATTGCACA...CTCTGTGGTGTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCGATGCCATAGCATTTTaGCCCAGGACTTCGAGCATT +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCDAIAF*PRTSSI
Trigger: AATGCTCGAAGTCCTGGGGCAAAATGCTATGGCATC...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACTGTGCGATGGAGATGTaGAACACATCTGGACACTTC +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDCAMEM*NTSGHF
Trigger: GAAGTGTCCAGATGTGTTGCACATCTCCATCGCACA...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCTGTGCGATGGAGATGTaGAACACATCTGGACACTTC +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCCAMEM*NTSGHF
Trigger: GAAGTGTCCAGATGTGTTGCACATCTCCATCGCACA...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCGAAATCAGTTGTCCATaGAGCTCTGTGCGATGGAGA +
Preference number: 4 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLEISCP*SSVRWR
Trigger: TCTCCATCGCACAGAGCTGCATGGACAACTGATTTC...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACGAAATCAGTTGTCCATaGAGCTCTGTGCGATGGAGA +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDEISCP*SSVRWR
Trigger: TCTCCATCGCACAGAGCTGCATGGACAACTGATTTC...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp ACTTGTGTCCCGTCCATGACGTTCCACGACATGTCGTTCTTCAGGGTAGTGCTGACCTTTGCCTTTGGTTaGTTTCTTGTTTGGAGTATC +
Preference number: 4 (lower is better)
Translates to: TCVPSMTFHDMSFFRVVLTFAFG*FLVWSI
Trigger: GATACTCCAAACAAGAAACCAACCAAAGGCAAAGGT...CAGCACTACCCTGAAGAACGACATGTCGTGGAACGTCATGGACGGGACACAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTGACTCCCGTTGTAGAAAGCAACTCCTaGGAATGCACAATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: VQRLLSQIFLAFQLVTPVVESNS*ECTISS
Trigger: AGAGGAAATTGTGCATTCCCAGGAGTTGCTTTCTAC...AACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGATGGCATCTTCAGCCTaGATTGTGACCGAGATGTTG +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVMASSA*IVTEML
Trigger: CAACATCTCGGTCACAATCCAGGCTGAAGATGCCAT...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACTCATCTCATAATCCTTaGCTTCCTTCTCCGGGCTCT +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDSSHNP*LPSPGS
Trigger: AGAGCCCGGAGAAGGAAGCCAAGGATTATGAGATGA...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGGTACCTTTCAAAACTTaGCTCTTCTCTTCGGGCTGC +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVVPFKT*LFSSGC
Trigger: GCAGCCCGAAGAGAAGAGCCAAGTTTTGAAAGGTAC...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR TCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCTCTTCCTCACCATCTTaGGCTGTTAGAAAGGTGTCA +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCSSSPS*AVRKVS
Trigger: TGACACCTTTCTAACAGCTCAAGATGGTGAGGAAGA...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACTCTTCCTCACCATCTTaGGCTGTTAGAAAGGTGTCA +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDSSSPS*AVRKVS
Trigger: TGACACCTTTCTAACAGCTCAAGATGGTGAGGAAGA...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR TCA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCCATCAAAATCCAGAGTaGTGGCATCTTCAGCCTGGA +
Preference number: 4 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVHQNPE*WHLQPG
Trigger: TCCAGGCTGAAGATGCCATCACTCTGGATTTTGATG...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCATGTCCTGGACTCTTTaGACTTATCCGCTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLMSWTL*TYPLLL
Trigger: GAGAAGAAGCGGATAAGTTCAAAGAGTCCAGGACAT...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGATGTCCTGGACTCTTTaGACTTATCCGCTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVMSWTL*TYPLLL
Trigger: GAGAAGAAGCGGATAAGTTCAAAGAGTCCAGGACAT...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCCTTGACGGCCTACAATaGTCTCCCTTGGTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVLDGLQ*SPLVWF
Trigger: AAACCAAACCAAGGGAGATCATTGTAGGCCGTCAAG...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCTCTTTGCTTCTTCCATaGCCTTTCTCATATCTGCCC +
Preference number: 4 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLSLLLP*PFSYLP
Trigger: GGGCAGATATGAGAAAGGTCATGGAAGAAGCAAAGA...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACTGTGCAATGGCGTCCTaGACATCTTTTGGCTTACTT +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDCAMAS*TSFGLL
Trigger: AAGTAAGCCAAAAGATGTGCAGGACGCCATTGCACA...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAGATGCCATAGCATTTTaGCCCAGGACTTCGAGCATT +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPDAIAF*PRTSSI
Trigger: AATGCTCGAAGTCCTGGGGCAAAATGCTATGGCATC...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGAAGACATGGTTACGATaGCATAGCATTTTGCCCCAG +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVKTWLR*HSILPQ
Trigger: CTGGGGCAAAATGCTATGGCATCGTAACCATGTCTT...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCAAGACATGGTTACGATaGCATAGCATTTTGCCCCAG +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCKTWLR*HSILPQ
Trigger: CTGGGGCAAAATGCTATGGCATCGTAACCATGTCTT...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCTGTTCAATACGAATaGGTTCCCTTTCCAAGCGTT +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVPVQYE*VPFPSV
Trigger: AACGCTTGGAAAGGGAACGCATTCGTATTGAACAGG...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACCCTGTTCAATACGAATaGGTTCCCTTTCCAAGCGTT +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDPVQYE*VPFPSV
Trigger: AACGCTTGGAAAGGGAACGCATTCGTATTGAACAGG...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCTTTCAAAGGATGACTaGACAGATGCAGTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCLSKDD*TDAVSG
Trigger: TCCTGACACTGCATCTGTGCAGTCATCCTTTGAAAG...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp GAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACACCACAGAGGTAGAAAGCAACTCCTaGGAATGCACAATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: EAQIAFKMEAANTGDTTEVESNS*ECTISS
Trigger: AGAGGAAATTGTGCATTCCCAGGAGTTGCTTTCTAC...CTCTGTGGTGTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp GAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACACCACAGAGGTCCTGCACATCTTTTaGCTTACTTGCTTCAGAATC +
Preference number: 4 (lower is better)
Translates to: EAQIAFKMEAANTGDTTEVLHIF*LTCFRI
Trigger: GATTCTGAAGCAAGTAAGCCAAAAGATGTGCAGGAC...CTCTGTGGTGTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCATCTCATAATCCTTaGCTTCCTTCTCCGGGCTCT +
Preference number: 4 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVSSHNP*LPSPGS
Trigger: AGAGCCCGGAGAAGGAAGCCAAGGATTATGAGATGA...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACACCACAGAGCTGTGCTTGAAGACATaGTTACGATGCCATAGCATT +
Preference number: 4 (lower is better)
Translates to: EAQIAFKMEAANTGDTTELCLKT*LRCHSI
Trigger: AATGCTATGGCATCGTAACCATGTCTTCAAGCACAG...CTCTGTGGTGTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCGATGTGCAACACATCTaGACACTTCTGTGCTTGAAG +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCDVQHI*TLLCLK
Trigger: CTTCAAGCACAGAAGTGTCCAGATGTGTTGCACATC...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCGATGTGCAACACATCTaGACACTTCTGTGCTTGAAG +
Preference number: 4 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLDVQHI*TLLCLK
Trigger: CTTCAAGCACAGAAGTGTCCAGATGTGTTGCACATC...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACACCACAGAGTTCATTTCTTGGTGGTaGAGGCTCATTTCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: EAQIAFKMEAANTGDTTEFISWW*RLISSG
Trigger: TCCAGAAGAAATGAGCCTCCACCACCAAGAAATGAA...CTCTGTGGTGTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGACTCCCGTTTCTCTGTaGACATATTCGCTTCGCTTT +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVTPVSL*TYSLRF
Trigger: AAAGCGAAGCGAATATGTCCACAGAGAAACGGGAGT...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
3UTR CAA 72 bp GATGGAGATGTGCAACACATCTGGACACTTCTGTGCTaGAAGACATGGTTACGATGCCATAGCATTTTGCCC +
Preference number: 4 (lower is better)
Translates to: DGDVQHIWTLLC*KTWLRCHSILP
Trigger: GGGCAAAATGCTATGGCATCGTAACCATGTCTTCAAGCACAGAAGTGTCCAGATGTGTTGCACATCTCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
CDS-3UTR TCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAATGTCCTGGACTCTTTaGACTTATCCGCTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPMSWTL*TYPLLL
Trigger: GAGAAGAAGCGGATAAGTTCAAAGAGTCCAGGACAT...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCATCTTTGCTTCTTCCATaGCCTTTCTCATATCTGCCC +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPSLLLP*PFSYLP
Trigger: GGGCAGATATGAGAAAGGTCATGGAAGAAGCAAAGA...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAATTCCTCTGTCAGCAATaGCTCCTCGCTCTCCCTCTC +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYEFLCQQ*LLALPL
Trigger: GAGAGGGAGAGCGAGGAGTCATTGCTGACAGAGGAA...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp GTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTGACTCCCGTTATCTTCTATTGCTTCTaGCTCTACAAATTCCTGAGT +
Preference number: 4 (lower is better)
Translates to: VQRLLSQIFLAFQLVTPVIFYCF*LYKFLS
Trigger: ACTCAGGAATTTGTAGAGGCAGAAGCAATAGAAGAT...AACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCATCTGGACACTTCTGTaGTTGAAGACATGGTTACGA +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCIWTLL*LKTWLR
Trigger: TCGTAACCATGTCTTCAAGCACAGAAGTGTCCAGAT...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCACTTTCAAAGGATGACTaGACAGATGCAGTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPLSKDD*TDAVSG
Trigger: TCCTGACACTGCATCTGTGCAGTCATCCTTTGAAAG...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAATTGGGTTATCATGCCTaGTCCTGCTCGGCCATCACC +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYELGYHA*SCSAIT
Trigger: GGTGATGGCCGAGCAGGAGCAGGCATGATAACCCAA...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAACCGGGCTCTGTGCAATaGCGTCCTGCACATCTTTTG +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYEPGSVQ*RPAHLL
Trigger: CAAAAGATGTGCAGGACGCCATTGCACAGAGCCCGG...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCTGTGCTTGAAGACATaGTTACGATGCCATAGCATT +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVLCLKT*LRCHSI
Trigger: AATGCTATGGCATCGTAACCATGTCTTCAAGCACAG...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAGATGTGCAACACATCTaGACACTTCTGTGCTTGAAG +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPDVQHI*TLLCLK
Trigger: CTTCAAGCACAGAAGTGTCCAGATGTGTTGCACATC...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCTTCATTTCTTGGTGGTaGAGGCTCATTTCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCFISWW*RLISSG
Trigger: TCCAGAAGAAATGAGCCTCCACCACCAAGAAATGAA...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR TCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAACTTTTTCAGGGACTCTaGAGTCTGCCCACTTGGACC +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYELFQGL*SLPTWT
Trigger: GGTCCAAGTGGGCAGACTTCAGAGTCCCTGAAAAAG...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCGCCATCACCAGAACCTaGTATATCTTTCTCATTTTC +
Preference number: 4 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCAITRT*YIFLIF
Trigger: GAAAATGAGAAAGATATAGCAGGTTCTGGTGATGGC...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAATCTGGACACTTCTGTaGTTGAAGACATGGTTACGA +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPIWTLL*LKTWLR
Trigger: TCGTAACCATGTCTTCAAGCACAGAAGTGTCCAGAT...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp TCTCGTCTGTCTGTTTCTCTAAGTTCATTTCTTGGTGGTGGAGGCTCATTTCTTTGTGCGATGGAGATGTaGAACACATCTGGACACTTC +
Preference number: 4 (lower is better)
Translates to: SRLSVSLSSFLGGGGSFLCAMEM*NTSGHF
Trigger: GAAGTGTCCAGATGTGTTGCACATCTCCATCGCACA...AAGAAATGAGCCTCCACCACCAAGAAATGAACTTAGAGAAACAGACAGACGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAAGTCCATGCAGCTCTGTaGGATGGAGATGTGCAACAC +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYEVHAAL*DGDVQH
Trigger: GTGTTGCACATCTCCATCGCACAGAGCTGCATGGAC...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp TCTGGCCTTTCAACTCGTGACTCCCGTTTCTCTGTGGACATATTCGCTTCGCTTCCTTCTGAATTCCACTaGTTGTTTCAGTCTTTCAAA +
Preference number: 4 (lower is better)
Translates to: SGLSTRDSRFSVDIFASLPSEFH*LFQSFK
Trigger: TTTGAAAGACTGAAACAAGCAGTGGAATTCAGAAGG...AAGCGAAGCGAATATGTCCACAGAGAAACGGGAGTCACGAGTTGAAAGGCCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAGTCCTGCACATCTTTTaGCTTACTTGCTTCAGAATC +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPVLHIF*LTCFRI
Trigger: GATTCTGAAGCAAGTAAGCCAAAAGATGTGCAGGAC...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGAAGTTCATTTCTTGGTaGTGGAGGCTCATTTCTTCT +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVKFISW*WRLISS
Trigger: AGAAGAAATGAGCCTCCACCACCAAGAAATGAACTT...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR TCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCACCAATTCACAGTCCTTaGCAAAAGAATCATCTTCCA +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPPIHSP*QKNHLP
Trigger: TGGAAGATGATTCTTTTGTCAAGGACTGTGAATTGG...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAAATATCTGCCCCTTCTTaGCGGCCTACAATGATCTCC +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYEISAPS*RPTMIS
Trigger: GGAGATCATTGTAGGCCGTCAAGAAGGGGCAGATAT...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGATCTTCTATTGCTTCTaGCTCTACAAATTCCTGAGT +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVIFYCF*LYKFLS
Trigger: ACTCAGGAATTTGTAGAGGCAGAAGCAATAGAAGAT...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCATCTTCTATTGCTTCTaGCTCTACAAATTCCTGAGT +
Preference number: 4 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLIFYCF*LYKFLS
Trigger: ACTCAGGAATTTGTAGAGGCAGAAGCAATAGAAGAT...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp GAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACACCACAGAGTCTTCTGAATTCCACTaGTTGTTTCAGTCTTTCAAA +
Preference number: 4 (lower is better)
Translates to: EAQIAFKMEAANTGDTTESSEFH*LFQSFK
Trigger: TTTGAAAGACTGAAACAAGCAGTGGAATTCAGAAGA...CTCTGTGGTGTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAACCTTTGCCTTTGGTTaGTTTCTTGTTTGGAGTATC +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPTFAFG*FLVWSI
Trigger: GATACTCCAAACAAGAAACCAACCAAAGGCAAAGGT...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGTTTTACCTTTGCCTTTaGTTGGTTTCTTGTTTGGAG +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVFYLCL*LVSCLE
Trigger: CTCCAAACAAGAAACCAACCAAAGGCAAAGGTAAAA...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCTACAATGATCTCCCTTaGTTTGGTTTAGTATCACCA +
Preference number: 4 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLYNDLP*FGLVSP
Trigger: TGGTGATACTAAACCAAACCAAGGGAGATCATTGTA...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTCTTCAGCCTGGATTGTaGCCGAGATGTTGTCATCCT +
Preference number: 4 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLLQPGL*PRCCHP
Trigger: AGGATGACAACATCTCGGTCACAATCCAGGCTGAAG...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR TCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAACATCAAAATCCAGAGTaGTGGCATCTTCAGCCTGGA +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYEHQNPE*WHLQPG
Trigger: TCCAGGCTGAAGATGCCATCACTCTGGATTTTGATG...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR TCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAACTTGACGGCCTACAATaGTCTCCCTTGGTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYELDGLQ*SPLVWF
Trigger: AAACCAAACCAAGGGAGATCATTGTAGGCCGTCAAG...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGGAACCTTTCCATATTTaGCAAAGAGGTTCTTCAAAT +
Preference number: 4 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVEPFHI*QRGSSN
Trigger: ATTTGAAGAACCTCTTTGGCAAATATGGAAAGGTTC...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACGAACCTTTCCATATTTaGCAAAGAGGTTCTTCAAAT +
Preference number: 4 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDEPFHI*QRGSSN
Trigger: ATTTGAAGAACCTCTTTGGCAAATATGGAAAGGTTC...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCTCTTCTGAATTCCACTaGTTGTTTCAGTCTTTCAAA +
Preference number: 4 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLSSEFH*LFQSFK
Trigger: TTTGAAAGACTGAAACAAGCAGTGGAATTCAGAAGA...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCATACAATGATCTCCCTTaGTTTGGTTTAGTATCACCA +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPYNDLP*FGLVSP
Trigger: TGGTGATACTAAACCAAACCAAGGGAGATCATTGTA...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR GCA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAGAACCTTTCCATATTTaGCAAAGAGGTTCTTCAAAT +
Preference number: 4 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPEPFHI*QRGSSN
Trigger: ATTTGAAGAACCTCTTTGGCAAATATGGAAAGGTTC...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTGTACCTTTCAAAACTTaGCTCTTCTCTTCGGGCTGC +
Preference number: 4 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLVPFKT*LFSSGC
Trigger: GCAGCCCGAAGAGAAGAGCCAAGTTTTGAAAGGTAC...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTAAGACATGGTTACGATaGCATAGCATTTTGCCCCAG +
Preference number: 4 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLKTWLR*HSILPQ
Trigger: CTGGGGCAAAATGCTATGGCATCGTAACCATGTCTT...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAAATCTGGACACTTCTGTaGTTGAAGACATGGTTACGA +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYEIWTLL*LKTWLR
Trigger: TCGTAACCATGTCTTCAAGCACAGAAGTGTCCAGAT...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAACTGTGCTTGAAGACATaGTTACGATGCCATAGCATT +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYELCLKT*LRCHSI
Trigger: AATGCTATGGCATCGTAACCATGTCTTCAAGCACAG...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTACTCCCGTTTCTCTGTaGACATATTCGCTTCGCTTT +
Preference number: 4 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLTPVSL*TYSLRF
Trigger: AAAGCGAAGCGAATATGTCCACAGAGAAACGGGAGT...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAAAGCAACTCCTGGGAATaGACAATTTCCTCTTCATTT +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYESNSWE*TISSSF
Trigger: AAATGAAGAGGAAATTGTGCATTCCCAGGAGTTGCT...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTGTAGAAAGCAACTCCTaGGAATGCACAATTTCCTCT +
Preference number: 4 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLVESNS*ECTISS
Trigger: AGAGGAAATTGTGCATTCCCAGGAGTTGCTTTCTAC...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAATCTAAGTTCATTTCTTaGTGGTGGAGGCTCATTTCT +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYESKFIS*WWRLIS
Trigger: AGAAATGAGCCTCCACCACCAAGAAATGAACTTAGA...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR GCA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTAGCAACTCCTGGGAATaGACAATTTCCTCTTCATTT +
Preference number: 4 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLSNSWE*TISSSF
Trigger: AAATGAAGAGGAAATTGTGCATTCCCAGGAGTTGCT...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTACCTTTGCCTTTGGTTaGTTTCTTGTTTGGAGTATC +
Preference number: 4 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLTFAFG*FLVWSI
Trigger: GATACTCCAAACAAGAAACCAACCAAAGGCAAAGGT...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAATTTTACCTTTGCCTTTaGTTGGTTTCTTGTTTGGAG +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYEFYLCL*LVSCLE
Trigger: CTCCAAACAAGAAACCAACCAAAGGCAAAGGTAAAA...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAATACAATGATCTCCCTTaGTTTGGTTTAGTATCACCA +
Preference number: 4 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYEYNDLP*FGLVSP
Trigger: TGGTGATACTAAACCAAACCAAGGGAGATCATTGTA...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CCA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTTCTAAGTTCATTTCTTaGTGGTGGAGGCTCATTTCT +
Preference number: 4 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLSKFIS*WWRLIS
Trigger: AGAAATGAGCCTCCACCACCAAGAAATGAACTTAGA...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp TTCACTGGGGACGCAGTGCTTGAGTGTTGGGTTATCATGCCTGCTCCTGCTCGGCCGTTGATGTCCAAGTaGCGGCGCTTCAGCTCGGAC +
Preference number: 5 (lower is better)
Translates to: FTGDAVLECWVIMPAPARPLMSK*RRFSSD
Trigger: GTCCGAGCTGAAGCGCCGCAACTTGGACATCAACGG...CCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp TCTGGCTTCCTTCTCGACAGGCTCACCCTTCACGGAGTCTTCCTTCTTACCATCCCGTTGATGTCCAAGTaGCGGCGCTTCAGCTCGGAC +
Preference number: 5 (lower is better)
Translates to: SGFLLDRLTLHGVFLLTIPLMSK*RRFSSD
Trigger: GTCCGAGCTGAAGCGCCGCAACTTGGACATCAACGG...GATGGTAAGAAGGAAGACTCCGTGAAGGGTGAGCCTGTCGAGAAGGAAGCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213808.2
CDS-3UTR CAA 90 bp TTCACTGGGGACGCAGTGCTTGAGTGTTGGGTTATCATGCCTGCTCCTGCTCGGCTGACCCAGATGTTCTaGGTTGAGCTTCCACTGCTC +
Preference number: 5 (lower is better)
Translates to: FTGDAVLECWVIMPAPARLTQMF*VELPLL
Trigger: GAGCAGTGGAAGCTCAACCAAGAACATCTGGGTCAG...CCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACCCGTTGATGTCCAAGTaGCGGCGCTTCAGCTCGGAC +
Preference number: 5 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDPLMSK*RRFSSD
Trigger: GTCCGAGCTGAAGCGCCGCAACTTGGACATCAACGG...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp GGGGACGCAGTGCTTGAGTGTTGGGTTATCATGCCTGCTCCTGCTCGGCCATCACGTCCTGCACATCTTTaGGCTTACTTGCTTCAGAAT +
Preference number: 5 (lower is better)
Translates to: GDAVLECWVIMPAPARPSRPAHL*AYLLQN
Trigger: ATTCTGAAGCAAGTAAGCCAAAAGATGTGCAGGACG...TGATGGCCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS GCA 90 bp GAGCAATCCTTTCAGCTTCCCTGCGCCGCTCCTGTTCAATACGAATaGGTTCCCTTTCCAAGCGTTCGCGTTCCATTCTCTCTCTCTCTA +
Preference number: 5 (lower is better)
Translates to: EQSFQLPCAAPVQYE*VPFPSVRVPFSLSL
Trigger: TAGAGAGAGAGAGAATGGAACGCGAACGCTTGGAAAGGGAACGCATTCGTATTGAACAGGAGCGGCGCAGGGAAGCTGAAAGGATTGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp ACTTGTGTCCCGTCCATGACGTTCCACGACATGTCGTTCTTCAGGGTAGTGCTGCATATCTGCCCCTTCTaGACGGCCTACAATGATCTC +
Preference number: 5 (lower is better)
Translates to: TCVPSMTFHDMSFFRVVLHICPF*TAYNDL
Trigger: GAGATCATTGTAGGCCGTCAAGAAGGGGCAGATATG...CAGCACTACCCTGAAGAACGACATGTCGTGGAACGTCATGGACGGGACACAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACACCACAGAGCCGAGCTGCTTCCTCTaGGCAAGGAGTTACCACTCA +
Preference number: 5 (lower is better)
Translates to: EAQIAFKMEAANTGDTTEPSCFL*ARSYHS
Trigger: TGAGTGGTAACTCCTTGCCAAGAGGAAGCAGCTCGG...CTCTGTGGTGTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp TTCACTGGGGACGCAGTGCTTGAGTGTTGGGTTATCATGCCTGCTCCTGCTCGGTTGGTCATGTGTCTCTaGATTCTCCAATTCACAGTC +
Preference number: 5 (lower is better)
Translates to: FTGDAVLECWVIMPAPARLVMCL*ILQFTV
Trigger: GACTGTGAATTGGAGAATCAAGAGACACATGACCAA...CCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GCGCTCCCCTCACAGTGTGTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTAGGTTTAGATACTTCTaGTGTGCCATCACCAGAACC +
Preference number: 5 (lower is better)
Translates to: ALPSQCVQRLLSQIFLAFRFRYF*CAITRT
Trigger: GGTTCTGGTGATGGCACACAAGAAGTATCTAAACCT...AAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGACACACTGTGAGGGGAGCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCTTTGAAGAGCTCTTaGCTTGACCAGAGGCCCCTG +
Preference number: 5 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVPLKSS*LDQRPL
Trigger: CAGGGGCCTCTGGTCAAGCAAAGAGCTCTTCAAAGG...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCCTTTGAAGAGCTCTTaGCTTGACCAGAGGCCCCTG +
Preference number: 5 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCPLKSS*LDQRPL
Trigger: CAGGGGCCTCTGGTCAAGCAAAGAGCTCTTCAAAGG...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCCAGATGTTCTTGGTaGAGCTTCCACTGCTCCCAC +
Preference number: 5 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVPRCSW*SFHCSH
Trigger: GTGGGAGCAGTGGAAGCTCAACCAAGAACATCTGGG...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGGTTGGTCTAGAAGGATaGGGCACAGTCTCTCGAGGG +
Preference number: 5 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVVGLEG*GTVSRG
Trigger: CCCTCGAGAGACTGTGCCCAATCCTTCTAGACCAAC...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCATGCCACTCTTTCCTaGGTCCACTTGTGTCCCGTC +
Preference number: 5 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVHATLS*VHLCPV
Trigger: GACGGGACACAAGTGGACCAAGGAAAGAGTGGCATG...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCACCCAGATGTTCTTGGTaGAGCTTCCACTGCTCCCAC +
Preference number: 5 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPPRCSW*SFHCSH
Trigger: GTGGGAGCAGTGGAAGCTCAACCAAGAACATCTGGG...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCTGACCCAGATGTTCTaGGTTGAGCTTCCACTGCTC +
Preference number: 5 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCLTQMF*VELPLL
Trigger: GAGCAGTGGAAGCTCAACCAAGAACATCTGGGTCAG...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCCGATGCCATAGCATTTaGCCCCAGGACTTCGAGCAT +
Preference number: 5 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLRCHSI*PQDFEH
Trigger: ATGCTCGAAGTCCTGGGGCAAAATGCTATGGCATCG...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CAGATCTTTCTGGCCTTTCAACTCGTGACTCCCGTTTCTCTGTGGACATATTCGCGATGCCATAGCATTTaGCCCCAGGACTTCGAGCAT +
Preference number: 5 (lower is better)
Translates to: QIFLAFQLVTPVSLWTYSRCHSI*PQDFEH
Trigger: ATGCTCGAAGTCCTGGGGCAAAATGCTATGGCATCG...CGAATATGTCCACAGAGAAACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTGACTCCCGTTTGGACACTTCTGTGCTaGAAGACATGGTTACGATGC +
Preference number: 5 (lower is better)
Translates to: VQRLLSQIFLAFQLVTPVWTLLC*KTWLRC
Trigger: GCATCGTAACCATGTCTTCAAGCACAGAAGTGTCCA...AACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp TTCACTGGGGACGCAGTGCTTGAGTGTTGGGTTATCATGCCTGCTCCTGCTCGGTTAGAAGGATCACCTTaGACTTTCTCCACAGAAATC +
Preference number: 5 (lower is better)
Translates to: FTGDAVLECWVIMPAPARLEGSP*TFSTEI
Trigger: GATTTCTGTGGAGAAAGTCAAAGGTGATCCTTCTAA...CCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp TTCACTGGGGACGCAGTGCTTGAGTGTTGGGTTATCATGCCTGCTCCTGCTCGGTCTGAATTCCACTGCTaGTTTCAGTCTTTCAAAACG +
Preference number: 5 (lower is better)
Translates to: FTGDAVLECWVIMPAPARSEFHC*FQSFKT
Trigger: CGTTTTGAAAGACTGAAACAAGCAGTGGAATTCAGA...CCGAGCAGGAGCAGGCATGATAACCCAACACTCAAGCACTGCGTCCCCAGTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCACATGCCACTCTTTCCTaGGTCCACTTGTGTCCCGTC +
Preference number: 5 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPHATLS*VHLCPV
Trigger: GACGGGACACAAGTGGACCAAGGAAAGAGTGGCATG...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp GTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTGACTCCCGTTGTCATCTTCACCTTCTaGAGCTTCAGTTTCCTGACT +
Preference number: 5 (lower is better)
Translates to: VQRLLSQIFLAFQLVTPVVIFTF*SFSFLT
Trigger: AGTCAGGAAACTGAAGCTCAAGAAGGTGAAGATGAC...AACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GTCCAGAGACTTCTCTCCCAGATCTTTCTGGCCTTTCAACTCGTGACTCCCGTTATTGTGACCGAGATGTaGTCATCCTCAGCTTCTTTC +
Preference number: 5 (lower is better)
Translates to: VQRLLSQIFLAFQLVTPVIVTEM*SSSASF
Trigger: GAAAGAAGCTGAGGATGACAACATCTCGGTCACAAT...AACGGGAGTCACGAGTTGAAAGGCCAGAAAGATCTGGGAGAGAAGTCTCTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCCTGACCCAGATGTTCTaGGTTGAGCTTCCACTGCTC +
Preference number: 5 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVLTQMF*VELPLL
Trigger: GAGCAGTGGAAGCTCAACCAAGAACATCTGGGTCAG...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACACCACAGAGTGGACACTTCTGTGCTaGAAGACATGGTTACGATGC +
Preference number: 5 (lower is better)
Translates to: EAQIAFKMEAANTGDTTEWTLLC*KTWLRC
Trigger: GCATCGTAACCATGTCTTCAAGCACAGAAGTGTCCA...CTCTGTGGTGTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp ACTTGTGTCCCGTCCATGACGTTCCACGACATGTCGTTCTTCAGGGTAGTGCTGTATGTCCTGGACTCTTaGAACTTATCCGCTTCTTCT +
Preference number: 5 (lower is better)
Translates to: TCVPSMTFHDMSFFRVVLYVLDS*NLSASS
Trigger: AGAAGAAGCGGATAAGTTCAAAGAGTCCAGGACATA...CAGCACTACCCTGAAGAACGACATGTCGTGGAACGTCATGGACGGGACACAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCATATCTGCCCCTTCTaGACGGCCTACAATGATCTC +
Preference number: 5 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVHICPF*TAYNDL
Trigger: GAGATCATTGTAGGCCGTCAAGAAGGGGCAGATATG...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCATATCTGCCCCTTCTaGACGGCCTACAATGATCTC +
Preference number: 5 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCHICPF*TAYNDL
Trigger: GAGATCATTGTAGGCCGTCAAGAAGGGGCAGATATG...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACGGTACCTTTCAAAACTaGGCTCTTCTCTTCGGGCTG +
Preference number: 5 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDGTFQN*ALLFGL
Trigger: CAGCCCGAAGAGAAGAGCCAAGTTTTGAAAGGTACC...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCACTTTCCTTGGTCCACTaGTGTCCCGTCCATGACGTT +
Preference number: 5 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPLSLVH*CPVHDV
Trigger: AACGTCATGGACGGGACACAAGTGGACCAAGGAAAG...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCCTTTCCTTGGTCCACTaGTGTCCCGTCCATGACGTT +
Preference number: 5 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVLSLVH*CPVHDV
Trigger: AACGTCATGGACGGGACACAAGTGGACCAAGGAAAG...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS GCA 90 bp TCCCTTTCCAAGCGTTCGCGTTCCATTCTCTCTCTCTCTAGTTTTTaGCTTTCAATTTCTAGGCGCTCTCTCTCTCTCTGTAAGCGTTCC +
Preference number: 5 (lower is better)
Translates to: SLSKRSRSILSLSSF*LSISRRSLSLCKRS
Trigger: GGAACGCTTACAGAGAGAGAGAGAGCGCCTAGAAATTGAAAGGCAAAAACTAGAGAGAGAGAGAATGGAACGCGAACGCTTGGAAAGGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAACCGTTGATGTCCAAGTaGCGGCGCTTCAGCTCGGAC +
Preference number: 5 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYEPLMSK*RRFSSD
Trigger: GTCCGAGCTGAAGCGCCGCAACTTGGACATCAACGG...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CGTGGAGGTCCACTCTTAAACGGCTTAAACCCCGAGCTGCTTCCTCTTGGCAAGTTTTTACCTTTGCCTTaGGTTGGTTTCTTGTTTGGA +
Preference number: 5 (lower is better)
Translates to: RGGPLLNGLNPELLPLGKFLPLP*VGFLFG
Trigger: TCCAAACAAGAAACCAACCAAAGGCAAAGGTAAAAA...CTTGCCAAGAGGAAGCAGCTCGGGGTTTAAGCCGTTTAAGAGTGGACCTCCACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GGGCTGCTGGTCTCGGTTTCTTTCCTTCACTTTGACCAACAAACCGTTCCCGTCTCCAATTCACAGTCCTaGACAAAAGAATCATCTTCC +
Preference number: 5 (lower is better)
Translates to: GLLVSVSFLHFDQQTVPVSNSQS*TKESSS
Trigger: GGAAGATGATTCTTTTGTCAAGGACTGTGAATTGGA...GACGGGAACGGTTTGTTGGTCAAAGTGAAGGAAAGAAACCGAGACCAGCAGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCTGCCTGTGCTCCCTTaGTCATCTTTAGATGATGTC +
Preference number: 5 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVLPVLP*SSLDDV
Trigger: GACATCATCTAAAGATGACAAAGGGAGCACAGGCAG...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS TCA 90 bp TCTCTCTCCCGAGCAATCCTTTCAGCTTCCCTGCGCCGCTCCTTCTaGATTCCACTGCTTGTTTCAGTCTTTCAAAACGAACTAAATGTT +
Preference number: 5 (lower is better)
Translates to: SLSRAILSASLRRSF*IPLLVSVFQNELNV
Trigger: AACATTTAGTTCGTTTTGAAAGACTGAAACAAGCAGTGGAATTCAGAAGGAGCGGCGCAGGGAAGCTGAAAGGATTGCTCGGGAGAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCAGGTTTAGATACTTCTaGTGTGCCATCACCAGAACC +
Preference number: 5 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLRFRYF*CAITRT
Trigger: GGTTCTGGTGATGGCACACAAGAAGTATCTAAACCT...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCATTGTGACCGAGATGTaGTCATCCTCAGCTTCTTTC +
Preference number: 5 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCIVTEM*SSSASF
Trigger: GAAAGAAGCTGAGGATGACAACATCTCGGTCACAAT...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCGTCCTGCACATCTTTaGGCTTACTTGCTTCAGAAT +
Preference number: 5 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCRPAHL*AYLLQN
Trigger: ATTCTGAAGCAAGTAAGCCAAAAGATGTGCAGGACG...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTCCGTCCTGCACATCTTTaGGCTTACTTGCTTCAGAAT +
Preference number: 5 (lower is better)
Translates to: VHTVPNRTALCQSFQMGLRPAHL*AYLLQN
Trigger: ATTCTGAAGCAAGTAAGCCAAAAGATGTGCAGGACG...GAGACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCCTGCCTGTGCTCCCTTaGTCATCTTTAGATGATGTC +
Preference number: 5 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVLPVLP*SSLDDV
Trigger: GACATCATCTAAAGATGACAAAGGGAGCACAGGCAG...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCATGGACACTTCTGTGCTaGAAGACATGGTTACGATGC +
Preference number: 5 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPWTLLC*KTWLRC
Trigger: GCATCGTAACCATGTCTTCAAGCACAGAAGTGTCCA...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGTTTCTTTCCTTCACTTaGACCAACAAACCGTTCCCG +
Preference number: 5 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVFLSFT*TNKPFP
Trigger: CGGGAACGGTTTGTTGGTCAAAGTGAAGGAAAGAAA...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS GCA 90 bp TTAGAAGGATCACCTTTGACTTTCTCCACAGAAATCAGTTGTCCATaGAGCTCTGTGCGATGGAGATGTGCAACACATCTGGACACTTCT +
Preference number: 5 (lower is better)
Translates to: LEGSPLTFSTEISCP*SSVRWRCATHLDTS
Trigger: AGAAGTGTCCAGATGTGTTGCACATCTCCATCGCACAGAGCTGCATGGACAACTGATTTCTGTGGAGAAAGTCAAAGGTGATCCTTCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACACCACAGAGTGGTTGGTTTCTTGTTaGGAGTATCAGTTGAAACAG +
Preference number: 5 (lower is better)
Translates to: EAQIAFKMEAANTGDTTEWLVSC*EYQLKQ
Trigger: CTGTTTCAACTGATACTCCAAACAAGAAACCAACCA...CTCTGTGGTGTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp ATTATCTTGAAGCCACAGCAGGAAGCTTGCGTTAAAATCGCCGTGGAGGTCCACCCTTTGGTTGGTTTCTaGTTTGGAGTATCAGTTGAA +
Preference number: 5 (lower is better)
Translates to: IILKPQQEACVKIAVEVHPLVGF*FGVSVE
Trigger: TTCAACTGATACTCCAAACAAGAAACCAACCAAAGG...GTGGACCTCCACGGCGATTTTAACGCAAGCTTCCTGCTGTGGCTTCAAGATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGTTGGTCATGTGTCTCTaGATTCTCCAATTCACAGTC +
Preference number: 5 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVLVMCL*ILQFTV
Trigger: GACTGTGAATTGGAGAATCAAGAGACACATGACCAA...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAGTCATCTTCACCTTCTaGAGCTTCAGTTTCCTGACT +
Preference number: 5 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPVIFTF*SFSFLT
Trigger: AGTCAGGAAACTGAAGCTCAAGAAGGTGAAGATGAC...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAATTGTGACCGAGATGTaGTCATCCTCAGCTTCTTTC +
Preference number: 5 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPIVTEM*SSSASF
Trigger: GAAAGAAGCTGAGGATGACAACATCTCGGTCACAAT...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCATTTCTTTCCTTCACTTaGACCAACAAACCGTTCCCG +
Preference number: 5 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPFLSFT*TNKPFP
Trigger: CGGGAACGGTTTGTTGGTCAAAGTGAAGGAAAGAAA...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAAGTTGGTCTAGAAGGATaGGGCACAGTCTCTCGAGGG +
Preference number: 5 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYEVGLEG*GTVSRG
Trigger: CCCTCGAGAGACTGTGCCCAATCCTTCTAGACCAAC...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAACTGGGGACGCAGTGCTaGAGTGTTGGGTTATCATGC +
Preference number: 5 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYELGTQC*SVGLSC
Trigger: GCATGATAACCCAACACTCAAGCACTGCGTCCCCAG...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCATTGGTCATGTGTCTCTaGATTCTCCAATTCACAGTC +
Preference number: 5 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPLVMCL*ILQFTV
Trigger: GACTGTGAATTGGAGAATCAAGAGACACATGACCAA...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCTTAGAAGGATCACCTTaGACTTTCTCCACAGAAATC +
Preference number: 5 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCLEGSP*TFSTEI
Trigger: GATTTCTGTGGAGAAAGTCAAAGGTGATCCTTCTAA...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCATATGTCCTGGACTCTTaGAACTTATCCGCTTCTTCT +
Preference number: 5 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPYVLDS*NLSASS
Trigger: AGAAGAAGCGGATAAGTTCAAAGAGTCCAGGACATA...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACTCTGAATTCCACTGCTaGTTTCAGTCTTTCAAAACG +
Preference number: 5 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDSEFHC*FQSFKT
Trigger: CGTTTTGAAAGACTGAAACAAGCAGTGGAATTCAGA...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp ATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCTCTGAATTCCACTGCTaGTTTCAGTCTTTCAAAACG +
Preference number: 5 (lower is better)
Translates to: IQLQTTHVHTVPNRTALCSEFHC*FQSFKT
Trigger: CGTTTTGAAAGACTGAAACAAGCAGTGGAATTCAGA...GCACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTCTGGGGACGCAGTGCTaGAGTGTTGGGTTATCATGC +
Preference number: 5 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLLGTQC*SVGLSC
Trigger: GCATGATAACCCAACACTCAAGCACTGCGTCCCCAG...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTCCGAGCTGCTTCCTCTaGGCAAGGAGTTACCACTCA +
Preference number: 5 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLPSCFL*ARSYHS
Trigger: TGAGTGGTAACTCCTTGCCAAGAGGAAGCAGCTCGG...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS CCA 90 bp CTTTCTCATATCTGCCCCTTCTTGACGGCCTACAATGATCTCCCTTaGTTTGGTTTAGTATCACCATATGTCCTGGACTCTTTGAACTTA +
Preference number: 5 (lower is better)
Translates to: LSHICPFLTAYNDLP*FGLVSPYVLDSLNL
Trigger: TAAGTTCAAAGAGTCCAGGACATATGGTGATACTAAACCAAACCAAGGGAGATCATTGTAGGCCGTCAAGAAGGGGCAGATATGAGAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCACCTTTGGTTGGTTTCTaGTTTGGAGTATCAGTTGAA +
Preference number: 5 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPPLVGF*FGVSVE
Trigger: TTCAACTGATACTCCAAACAAGAAACCAACCAAAGG...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCCCTTTGGTTGGTTTCTaGTTTGGAGTATCAGTTGAA +
Preference number: 5 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVPLVGF*FGVSVE
Trigger: TTCAACTGATACTCCAAACAAGAAACCAACCAAAGG...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CATTCAGCTGCAAACCACTCATGTTCACACAGTGCCAAACAGAACAGCCTTGTGTTTTTACCTTTGCCTTaGGTTGGTTTCTTGTTTGGA +
Preference number: 5 (lower is better)
Translates to: HSAANHSCSHSAKQNSLVFLPLP*VGFLFG
Trigger: TCCAAACAAGAAACCAACCAAAGGCAAAGGTAAAAA...CACAAGGCTGTTCTGTTTGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GCAAATGAAACCACTACCATTCAGCTGCAAACCACTCATGTTCACACAGTGCCATCCAATTCACAGTCCTaGACAAAAGAATCATCTTCC +
Preference number: 5 (lower is better)
Translates to: ANETTTIQLQTTHVHTVPSNSQS*TKESSS
Trigger: GGAAGATGATTCTTTTGTCAAGGACTGTGAATTGGA...TGGCACTGTGTGAACATGAGTGGTTTGCAGCTGAATGGTAGTGGTTTCATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp CAGGCTTTTGAAGCTCAAATAGCCTTCAAAATGGAGGCAGCCAACACTGGTGACAGAACCTTTCCATATTaGCCAAAGAGGTTCTTCAAA +
Preference number: 5 (lower is better)
Translates to: QAFEAQIAFKMEAANTGDRTFPY*PKRFFK
Trigger: TTTGAAGAACCTCTTTGGCAAATATGGAAAGGTTCT...GTCACCAGTGTTGGCTGCCTCCATTTTGAAGGCTATTTGAGCTTCAAAAGCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCTTAGAAGGATCACCTTaGACTTTCTCCACAGAAATC +
Preference number: 5 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVLEGSP*TFSTEI
Trigger: GATTTCTGTGGAGAAAGTCAAAGGTGATCCTTCTAA...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAACTGCCTGTGCTCCCTTaGTCATCTTTAGATGATGTC +
Preference number: 5 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYELPVLP*SSLDDV
Trigger: GACATCATCTAAAGATGACAAAGGGAGCACAGGCAG...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp ATGTTCACACAGTGCCAAACAGAACAGCCTTGTGCCAATCCTTTCAAATGGGTCAGAACCTTTCCATATTaGCCAAAGAGGTTCTTCAAA +
Preference number: 5 (lower is better)
Translates to: MFTQCQTEQPCANPFKWVRTFPY*PKRFFK
Trigger: TTTGAAGAACCTCTTTGGCAAATATGGAAAGGTTCT...GACCCATTTGAAAGGATTGGCACAAGGCTGTTCTGTTTGGCACTGTGTGAACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTGTCATCTTCACCTTCTaGAGCTTCAGTTTCCTGACT +
Preference number: 5 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLVIFTF*SFSFLT
Trigger: AGTCAGGAAACTGAAGCTCAAGAAGGTGAAGATGAC...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS-3UTR CAA 90 bp TCAAATGGGTCTCAGTGCTGCAAGAAAAGGTTGAATGGTACACAAAACTATGAATCCAATTCACAGTCCTaGACAAAAGAATCATCTTCC +
Preference number: 5 (lower is better)
Translates to: SNGSQCCKKRLNGTQNYESNSQS*TKESSS
Trigger: GGAAGATGATTCTTTTGTCAAGGACTGTGAATTGGA...TTCATAGTTTTGTGTACCATTCAACCTTTTCTTGCAGCACTGAGACCCATTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS-3UTR CAA 90 bp GTACCTTCTGCAAAAATAGGTTACATAATACTCCGAAATGCAGGGAACAATCTTTTTTTACCTTTGCCTTaGGTTGGTTTCTTGTTTGGA +
Preference number: 5 (lower is better)
Translates to: VPSAKIGYIILRNAGNNLFLPLP*VGFLFG
Trigger: TCCAAACAAGAAACCAACCAAAGGCAAAGGTAAAAA...AAGATTGTTCCCTGCATTTCGGAGTATTATGTAACCTATTTTTGCAGAAGGTAC
37% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS CAA 72 bp TGCTTCAGCCGGGAGACCAGTACCGTCTTGACCCCGTaGATGTCCAAGTTGCGGCGCTTCAGCTCGGACCTG +
Preference number: 6 (lower is better)
Translates to: CFSRETSTVLTP*MSKLRRFSSDL
Trigger: CAGGTCCGAGCTGAAGCGCCGCAACTTGGACATCAACGGGGTCAAGACGGTACTGGTCTCCCGGCTGAAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049263.9
ENSMUST00000213808.2
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS CAA 90 bp CCTTCCTCTTCAATAGCCTGCTTCAGCCGGGAGACCAGTACCGTCTaGACCCCGTTGATGTCCAAGTTGCGGCGCTTCAGCTCGGACCTG +
Preference number: 6 (lower is better)
Translates to: PSSSIACFSRETSTV*TPLMSKLRRFSSDL
Trigger: CAGGTCCGAGCTGAAGCGCCGCAACTTGGACATCAACGGGGTCAAGACGGTACTGGTCTCCCGGCTGAAGCAGGCTATTGAAGAGGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS CAA 90 bp TCAATAGCCTGCTTCAGCCGGGAGACCAGTACCGTCTTGACCCCGTaGATGTCCAAGTTGCGGCGCTTCAGCTCGGACCTGAGGTCGATA +
Preference number: 6 (lower is better)
Translates to: SIACFSRETSTVLTP*MSKLRRFSSDLRSI
Trigger: TATCGACCTCAGGTCCGAGCTGAAGCGCCGCAACTTGGACATCAACGGGGTCAAGACGGTACTGGTCTCCCGGCTGAAGCAGGCTATTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS CAA 72 bp GAGACCAGTACCGTCTTGACCCCGTTGATGTCCAAGTaGCGGCGCTTCAGCTCGGACCTGAGGTCGATAACC +
Preference number: 6 (lower is better)
Translates to: ETSTVLTPLMSK*RRFSSDLRSIT
Trigger: GGTTATCGACCTCAGGTCCGAGCTGAAGCGCCGCAACTTGGACATCAACGGGGTCAAGACGGTACTGGTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049263.9
ENSMUST00000213808.2
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS GCA 72 bp GCTCCTCTCTCTCCCGAGCAATCCTTTCAGCTTCCCTaGGCCGCTCCTGTTCAATACGAATGCGTTCCCTTT +
Preference number: 6 (lower is better)
Translates to: APLSPEQSFQLP*AAPVQYECVPF
Trigger: AAAGGGAACGCATTCGTATTGAACAGGAGCGGCGCAGGGAAGCTGAAAGGATTGCTCGGGAGAGAGAGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS GCA 72 bp GCTCCTCTCTCTCCCGAGCAATCCTTTCAGCTTCCCTaGGCCGCTCCTTCTGAATTCCACTGCTTGTTTCAG +
Preference number: 6 (lower is better)
Translates to: APLSPEQSFQLP*AAPSEFHCLFQ
Trigger: CTGAAACAAGCAGTGGAATTCAGAAGGAGCGGCGCAGGGAAGCTGAAAGGATTGCTCGGGAGAGAGAGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS GCA 72 bp ATATTATCTGGATCGCCTCCTTCCTCTTCAATAGCCTaGTTCAGCCGGGAGACCAGTACCGTCTTGACCCCG +
Preference number: 6 (lower is better)
Translates to: ILSGSPPSSSIA*FSRETSTVLTP
Trigger: CGGGGTCAAGACGGTACTGGTCTCCCGGCTGAAGCAGGCTATTGAAGAGGAAGGAGGCGATCCAGATAATAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS GCA 72 bp TTTCAGCTTCCCTGCGCCGCTCCTGTTCAATACGAATaGGTTCCCTTTCCAAGCGTTCGCGTTCCATTCTCT +
Preference number: 6 (lower is better)
Translates to: FQLPCAAPVQYE*VPFPSVRVPFS
Trigger: AGAGAATGGAACGCGAACGCTTGGAAAGGGAACGCATTCGTATTGAACAGGAGCGGCGCAGGGAAGCTGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS TCA 72 bp TATCCGCTTCTTCTCTTCACTCTTTTTCAGGGACTCTaGAGTCTGCCCACTTGGACCATCGTCGTTCTTCTC +
Preference number: 6 (lower is better)
Translates to: YPLLLFTLFQGL*SLPTWTIVVLL
Trigger: GAGAAGAACGACGATGGTCCAAGTGGGCAGACTTCAGAGTCCCTGAAAAAGAGTGAAGAGAAGAAGCGGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS TCA 72 bp CGAGCAATCCTTTCAGCTTCCCTGCGCCGCTCCTTCTaGATTCCACTGCTTGTTTCAGTCTTTCAAAACGAA +
Preference number: 6 (lower is better)
Translates to: RAILSASLRRSF*IPLLVSVFQNE
Trigger: TTCGTTTTGAAAGACTGAAACAAGCAGTGGAATTCAGAAGGAGCGGCGCAGGGAAGCTGAAAGGATTGCTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217593.2
CDS GCA 72 bp AAGCGTTCGCGTTCCATTCTCTCTCTCTCTAGTTTTTaGCTTTCAATTTCTAGGCGCTCTCTCTCTCTCTGT +
Preference number: 6 (lower is better)
Translates to: KRSRSILSLSSF*LSISRRSLSLC
Trigger: ACAGAGAGAGAGAGAGCGCCTAGAAATTGAAAGGCAAAAACTAGAGAGAGAGAGAATGGAACGCGAACGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
CDS CAA 90 bp CCTTTTCTTTGCTTCTTCCATGACCTTTCTCATATCTGCCCCTTCTaGACGGCCTACAATGATCTCCCTTGGTTTGGTTTAGTATCACCA +
Preference number: 6 (lower is better)
Translates to: PFLCFFHDLSHICPF*TAYNDLPWFGLVSP
Trigger: TGGTGATACTAAACCAAACCAAGGGAGATCATTGTAGGCCGTCAAGAAGGGGCAGATATGAGAAAGGTCATGGAAGAAGCAAAGAAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS TCA 72 bp CCTTTCTCATATCTGCCCCTTCTTGACGGCCTACAATaGTCTCCCTTGGTTTGGTTTAGTATCACCATATGT +
Preference number: 6 (lower is better)
Translates to: PFSYLPLLDGLQ*SPLVWFSITIC
Trigger: ACATATGGTGATACTAAACCAAACCAAGGGAGATCATTGTAGGCCGTCAAGAAGGGGCAGATATGAGAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2
CDS CAA 90 bp GATCTCCCTTGGTTTGGTTTAGTATCACCATATGTCCTGGACTCTTaGAACTTATCCGCTTCTTCTCTTCACTCTTTTTCAGGGACTCTG +
Preference number: 6 (lower is better)
Translates to: DLPWFGLVSPYVLDS*NLSASSLHSFSGTL
Trigger: CAGAGTCCCTGAAAAAGAGTGAAGAGAAGAAGCGGATAAGTTCAAAGAGTCCAGGACATATGGTGATACTAAACCAAACCAAGGGAGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049263.9
ENSMUST00000216816.2
ENSMUST00000217593.2