Pregenerated sensors for SLPI (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017002Ensembl transcript IDs: ENSMUST00000109367.10, ENSMUST00000165980.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACCCTGGTCCACAGGATCCAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCGGAGCAGGGACGCCTaGGAGCAGGGAAGTAGTTTC | + |
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Preference number: 2 (lower is better) Translates to: TLVHRIQAWDTGSREPWNRSRDA*EQGSSF Trigger: GAAACTACTTCCCTGCTCCCAGGCGTCCCTGCTCCG...GTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGGATCCTGTGGACCAGGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| 3UTR CCA 72 bp | GGAGCCGGGAGCCATGGAACCCGGAGCAGGGACGCCTaGGAGCAGGGAAGTAGTTTCCAGAGCACACCGAGC | + |
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Preference number: 3 (lower is better) Translates to: GAGSHGTRSRDA*EQGSSFQSTPS Trigger: GCTCGGTGTGCTCTGGAAACTACTTCCCTGCTCCCAGGCGTCCCTGCTCCGGGTTCCATGGCTCCCGGCTCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| 3UTR CCA 72 bp | AGGATCCAAGCCTGGGATACAGGGAGCCGGGAGCCATaGAACCCGGAGCAGGGACGCCTGGGAGCAGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: RIQAWDTGSREP*NPEQGRLGAGK Trigger: CTTCCCTGCTCCCAGGCGTCCCTGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGGATCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| 3UTR CCA 72 bp | GGTAAAACAGTAACCCTGGTCCACAGGATCCAAGCCTaGGATACAGGGAGCCGGGAGCCATGGAACCCGGAG | + |
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Preference number: 3 (lower is better) Translates to: GKTVTLVHRIQA*DTGSREPWNPE Trigger: CTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGGATCCTGTGGACCAGGGTTACTGTTTTACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109367.10 |
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| 3UTR TCA 72 bp | TTATTTGCTCTCCAACAGCATTTCCCTAAAGATCGGTaGATGCTGAGCCAAAAGGAGATGTTAGTGGTAAAA | + |
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Preference number: 3 (lower is better) Translates to: LFALQQHFPKDR*MLSQKEMLVVK Trigger: TTTTACCACTAACATCTCCTTTTGGCTCAGCATTCACCGATCTTTAGGGAAATGCTGTTGGAGAGCAAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109367.10 |
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| CDS-3UTR GCA 90 bp | CCAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCAGGGACGCCTTCTTGGCAGCACCTCTaGTTTCCCGGGCACTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: PSLGYREPGAMEPGAGTPSWQHL*FPGHSQ Trigger: CTGGGAGTGCCCGGGAAAGCAGAGGTGCTGCCAAGA...AGGCGTCCCTGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR GCA 90 bp | CCACAGGATCCAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCATCTTGGCAGCACCTCTaGTTTCCCGGGCACTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: PQDPSLGYREPGAMEPGASWQHL*FPGHSQ Trigger: CTGGGAGTGCCCGGGAAAGCAGAGGTGCTGCCAAGA...TGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGGATCCTGTGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR GCA 90 bp | AAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCAGGGACGCCTGGTATTTGCCGTCACACTaGCCGTCCCTCTGGCAGACA | + |
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Preference number: 4 (lower is better) Translates to: KPGIQGAGSHGTRSRDAWYLPSH*PSLWQT Trigger: TGTCTGCCAGAGGGACGGGCAGTGTGACGGCAAATA...CCAGGCGTCCCTGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR CCA 90 bp | ATCCAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCAGGGACGCCACTGCCCGTCCCTCTaGCAGACATTGGGAGGGTTA | + |
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Preference number: 4 (lower is better) Translates to: IQAWDTGSREPWNPEQGRHCPSL*QTLGGL Trigger: TAACCCTCCCAATGTCTGCCAGAGGGACGGGCAGTG...GCGTCCCTGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGGAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR CCA 90 bp | CCACAGGATCCAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCACACTGCCCGTCCCTCTaGCAGACATTGGGAGGGTTA | + |
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Preference number: 4 (lower is better) Translates to: PQDPSLGYREPGAMEPGAHCPSL*QTLGGL Trigger: TAACCCTCCCAATGTCTGCCAGAGGGACGGGCAGTG...TGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGGATCCTGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR GCA 90 bp | CACAGGATCCAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCAGTATTTGCCGTCACACTaGCCGTCCCTCTGGCAGACA | + |
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Preference number: 4 (lower is better) Translates to: HRIQAWDTGSREPWNPEQYLPSH*PSLWQT Trigger: TGTCTGCCAGAGGGACGGGCAGTGTGACGGCAAATA...CTGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGGATCCTGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR GCA 90 bp | CAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCAGGGACGCCTGTCCTCCACACTGGTTTaGGAATGGGAACAGGATTCA | + |
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Preference number: 4 (lower is better) Translates to: QAWDTGSREPWNPEQGRLSSTLV*EWEQDS Trigger: TGAATCCTGTTCCCATTCGCAAACCAGTGTGGAGGA...CAGGCGTCCCTGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR GCA 90 bp | ATCCAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCAGGGACGCTCCTCCACACTGGTTTaGGAATGGGAACAGGATTCA | + |
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Preference number: 4 (lower is better) Translates to: IQAWDTGSREPWNPEQGRSSTLV*EWEQDS Trigger: TGAATCCTGTTCCCATTCGCAAACCAGTGTGGAGGA...GCGTCCCTGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR TCA 90 bp | AAAGGAGATGTTAGTGGTAAAACAGTAACCCTGGTCCACAGGATCCAAGCCTGGGAGCAAGGAGCACCGTaGAAGGTAAAAGGCCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: KGDVSGKTVTLVHRIQAWEQGAP*KVKGRR Trigger: CCTGCGGCCTTTTACCTTTCACGGTGCTCCTTGCTC...CCAGGCTTGGATCCTGTGGACCAGGGTTACTGTTTTACCACTAACATCTCCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109367.10 |
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| CDS-3UTR GCA 90 bp | AAAGGAGATGTTAGTGGTAAAACAGTAACCCTGGTCCACAGGATCCAAGCCTGGTTCCACAGTCCAGGGTaGCAGGATCCCCAGAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: KGDVSGKTVTLVHRIQAWFHSPG*QDPQSK Trigger: CTTGCTCTGGGGATCCTGGCACCCTGGACTGTGGAA...CCAGGCTTGGATCCTGTGGACCAGGGTTACTGTTTTACCACTAACATCTCCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109367.10 |
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| CDS-3UTR CAA 90 bp | CAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCAGGGACGCCTGGGAACCGCAAGCATCTaGGCAGCACCTCTGCTTTCC | + |
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Preference number: 5 (lower is better) Translates to: QAWDTGSREPWNPEQGRLGTASI*AAPLLS Trigger: GGAAAGCAGAGGTGCTGCCAAGATGCTTGCGGTTCC...CAGGCGTCCCTGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR CAA 90 bp | CCAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCAGGGACGCCTTCCCTCTGGCAGACATaGGGAGGGTTAAGCATCATA | + |
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Preference number: 5 (lower is better) Translates to: PSLGYREPGAMEPGAGTPSLWQT*GGLSII Trigger: TATGATGCTTAACCCTCCCAATGTCTGCCAGAGGGA...AGGCGTCCCTGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR CAA 90 bp | CAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCAGGGACGCCTGATACCCTCACAGCACTaGTATTTGCCGTCACACTGC | + |
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Preference number: 5 (lower is better) Translates to: QAWDTGSREPWNPEQGRLIPSQH*YLPSHC Trigger: GCAGTGTGACGGCAAATACAAGTGCTGTGAGGGTAT...CAGGCGTCCCTGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR CAA 90 bp | CCCTGGTCCACAGGATCCAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCATACCCTCACAGCACTaGTATTTGCCGTCACACTGC | + |
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Preference number: 5 (lower is better) Translates to: PWSTGSKPGIQGAGSHGTIPSQH*YLPSHC Trigger: GCAGTGTGACGGCAAATACAAGTGCTGTGAGGGTAT...GGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGGATCCTGTGGACCAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CCA 90 bp | GCAGCACCTCTGCTTTCCCGGGCACTCCCAGTCAGTACGGCATTGTaGCTTCTCAAGCTTAAGGCACTGGGCAGGCTTTTTAGCAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: AAPLLSRALPVSTAL*LLKLKALGRLFSRA Trigger: TGCCCTGCTAAAAAGCCTGCCCAGTGCCTTAAGCTTGAGAAGCCACAATGCCGTACTGACTGGGAGTGCCCGGGAAAGCAGAGGTGCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CCA 90 bp | GCTTCCTCCACACTGGTTTGCGAATGGGAACAGGATTCACGCACTTaGAACCGCAAGCATCTTGGCAGCACCTCTGCTTTCCCGGGCACT | + |
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Preference number: 5 (lower is better) Translates to: ASSTLVCEWEQDSRT*NRKHLGSTSAFPGT Trigger: AGTGCCCGGGAAAGCAGAGGTGCTGCCAAGATGCTTGCGGTTCCAAGTGCGTGAATCCTGTTCCCATTCGCAAACCAGTGTGGAGGAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR CAA 90 bp | CACAGGATCCAAGCCTGGGATACAGGGAGCCGGGAGCCATGGAACCCGGAGCAGTTGATAGCATCATTTTaGCCTCCTTCCACAGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: HRIQAWDTGSREPWNPEQLIASF*PPSTVQ Trigger: CTGGACTGTGGAAGGAGGCAAAAATGATGCTATCAA...CTGCTCCGGGTTCCATGGCTCCCGGCTCCCTGTATCCCAGGCTTGGATCCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109367.10 |
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| CDS GCA 90 bp | CCCGTCCCTCTGGCAGACATTGGGAGGGTTAAGCATCATACATCTTaGCTGAGTTTTGACGCACCTCCCAGGCTTCCTCCACACTGGTTT | + |
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Preference number: 5 (lower is better) Translates to: PVPLADIGRVKHHTS*LSFDAPPRLPPHWF Trigger: AAACCAGTGTGGAGGAAGCCTGGGAGGTGCGTCAAAACTCAGGCAAGATGTATGATGCTTAACCCTCCCAATGTCTGCCAGAGGGACGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS TCA 90 bp | TCCCTCTGGCAGACATTGGGAGGGTTAAGCATCATACATCTTGCCTaGGTTTTGACGCACCTCCCAGGCTTCCTCCACACTGGTTTGCGA | + |
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Preference number: 5 (lower is better) Translates to: SLWQTLGGLSIIHLA*VLTHLPGFLHTGLR Trigger: TCGCAAACCAGTGTGGAGGAAGCCTGGGAGGTGCGTCAAAACTCAGGCAAGATGTATGATGCTTAACCCTCCCAATGTCTGCCAGAGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR CAA 90 bp | AAAGGAGATGTTAGTGGTAAAACAGTAACCCTGGTCCACAGGATCCAAGCCTGGGGAACCGCAAGCATCTaGGCAGCACCTCTGCTTTCC | + |
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Preference number: 5 (lower is better) Translates to: KGDVSGKTVTLVHRIQAWGTASI*AAPLLS Trigger: GGAAAGCAGAGGTGCTGCCAAGATGCTTGCGGTTCC...CCAGGCTTGGATCCTGTGGACCAGGGTTACTGTTTTACCACTAACATCTCCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109367.10 |
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| CDS GCA 90 bp | ACTTTCCCACATATACCCTCACAGCACTTGTATTTGCCGTCACACTaGCCGTCCCTCTGGCAGACATTGGGAGGGTTAAGCATCATACAT | + |
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Preference number: 5 (lower is better) Translates to: TFPHIPSQHLYLPSH*PSLWQTLGGLSIIH Trigger: ATGTATGATGCTTAACCCTCCCAATGTCTGCCAGAGGGACGGGCAGTGTGACGGCAAATACAAGTGCTGTGAGGGTATATGTGGGAAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS-3UTR CAA 90 bp | CATAGAGAAATGAATGCGTTTATTTATTTGCTCTCCAACAGCATTTCCCTAAAGGGGCAGGCTCCGATTTaGATAGCATCATTTTTGCCT | + |
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Preference number: 5 (lower is better) Translates to: HREMNAFIYLLSNSISLKGQAPI*IASFLP Trigger: AGGCAAAAATGATGCTATCAAAATCGGAGCCTGCCC...CTTTAGGGAAATGCTGTTGGAGAGCAAATAAATAAACGCATTCATTTCTCTATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109367.10 |
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| CDS CAA 72 bp | GGGAACAGGATTCACGCACTTGGAACCGCAAGCATCTaGGCAGCACCTCTGCTTTCCCGGGCACTCCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: GNRIHALGTASI*AAPLLSRALPV Trigger: GACTGGGAGTGCCCGGGAAAGCAGAGGTGCTGCCAAGATGCTTGCGGTTCCAAGTGCGTGAATCCTGTTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CAA 90 bp | GGCTTCCTCCACACTGGTTTGCGAATGGGAACAGGATTCACGCACTaGGAACCGCAAGCATCTTGGCAGCACCTCTGCTTTCCCGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GFLHTGLRMGTGFTH*EPQASWQHLCFPGH Trigger: GTGCCCGGGAAAGCAGAGGTGCTGCCAAGATGCTTGCGGTTCCAAGTGCGTGAATCCTGTTCCCATTCGCAAACCAGTGTGGAGGAAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CCA 72 bp | GGAACAGGATTCACGCACTTGGAACCGCAAGCATCTTaGCAGCACCTCTGCTTTCCCGGGCACTCCCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: GTGFTHLEPQAS*QHLCFPGHSQS Trigger: TGACTGGGAGTGCCCGGGAAAGCAGAGGTGCTGCCAAGATGCTTGCGGTTCCAAGTGCGTGAATCCTGTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CAA 72 bp | CCTCTGCTTTCCCGGGCACTCCCAGTCAGTACGGCATaGTGGCTTCTCAAGCTTAAGGCACTGGGCAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: PLLSRALPVSTA*WLLKLKALGRL Trigger: AAGCCTGCCCAGTGCCTTAAGCTTGAGAAGCCACAATGCCGTACTGACTGGGAGTGCCCGGGAAAGCAGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CAA 90 bp | TTGGCAGCACCTCTGCTTTCCCGGGCACTCCCAGTCAGTACGGCATaGTGGCTTCTCAAGCTTAAGGCACTGGGCAGGCTTTTTAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: LAAPLLSRALPVSTA*WLLKLKALGRLFSR Trigger: CCTGCTAAAAAGCCTGCCCAGTGCCTTAAGCTTGAGAAGCCACAATGCCGTACTGACTGGGAGTGCCCGGGAAAGCAGAGGTGCTGCCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CCA 72 bp | CGCACCTCCCAGGCTTCCTCCACACTGGTTTGCGAATaGGAACAGGATTCACGCACTTGGAACCGCAAGCAT | + |
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Preference number: 6 (lower is better) Translates to: RTSQASSTLVCE*EQDSRTWNRKH Trigger: ATGCTTGCGGTTCCAAGTGCGTGAATCCTGTTCCCATTCGCAAACCAGTGTGGAGGAAGCCTGGGAGGTGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CAA 72 bp | GGCAGGCAGACTTTCCCACATATACCCTCACAGCACTaGTATTTGCCGTCACACTGCCCGTCCCTCTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: GRQTFPHIPSQH*YLPSHCPSLWQ Trigger: CTGCCAGAGGGACGGGCAGTGTGACGGCAAATACAAGTGCTGTGAGGGTATATGTGGGAAAGTCTGCCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CAA 72 bp | GTTTTGACGCACCTCCCAGGCTTCCTCCACACTGGTTaGCGAATGGGAACAGGATTCACGCACTTGGAACCG | + |
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Preference number: 6 (lower is better) Translates to: VLTHLPGFLHTG*RMGTGFTHLEP Trigger: CGGTTCCAAGTGCGTGAATCCTGTTCCCATTCGCAAACCAGTGTGGAGGAAGCCTGGGAGGTGCGTCAAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CCA 72 bp | CTGAGTTTTGACGCACCTCCCAGGCTTCCTCCACACTaGTTTGCGAATGGGAACAGGATTCACGCACTTGGA | + |
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Preference number: 6 (lower is better) Translates to: LSFDAPPRLPPH*FANGNRIHALG Trigger: TCCAAGTGCGTGAATCCTGTTCCCATTCGCAAACCAGTGTGGAGGAAGCCTGGGAGGTGCGTCAAAACTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS GCA 72 bp | CTGGCAGACATTGGGAGGGTTAAGCATCATACATCTTaGCTGAGTTTTGACGCACCTCCCAGGCTTCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: LADIGRVKHHTS*LSFDAPPRLPP Trigger: TGGAGGAAGCCTGGGAGGTGCGTCAAAACTCAGGCAAGATGTATGATGCTTAACCCTCCCAATGTCTGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CCA 72 bp | ACACTGGTTTGCGAATGGGAACAGGATTCACGCACTTaGAACCGCAAGCATCTTGGCAGCACCTCTGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: TLVCEWEQDSRT*NRKHLGSTSAF Trigger: GAAAGCAGAGGTGCTGCCAAGATGCTTGCGGTTCCAAGTGCGTGAATCCTGTTCCCATTCGCAAACCAGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CAA 72 bp | CACACTGGTTTGCGAATGGGAACAGGATTCACGCACTaGGAACCGCAAGCATCTTGGCAGCACCTCTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: HTGLRMGTGFTH*EPQASWQHLCF Trigger: AAAGCAGAGGTGCTGCCAAGATGCTTGCGGTTCCAAGTGCGTGAATCCTGTTCCCATTCGCAAACCAGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS TCA 72 bp | CAGACATTGGGAGGGTTAAGCATCATACATCTTGCCTaGGTTTTGACGCACCTCCCAGGCTTCCTCCACACT | + |
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Preference number: 6 (lower is better) Translates to: QTLGGLSIIHLA*VLTHLPGFLHT Trigger: AGTGTGGAGGAAGCCTGGGAGGTGCGTCAAAACTCAGGCAAGATGTATGATGCTTAACCCTCCCAATGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CCA 72 bp | CAGCACTTGTATTTGCCGTCACACTGCCCGTCCCTCTaGCAGACATTGGGAGGGTTAAGCATCATACATCTT | + |
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Preference number: 6 (lower is better) Translates to: QHLYLPSHCPSL*QTLGGLSIIHL Trigger: AAGATGTATGATGCTTAACCCTCCCAATGTCTGCCAGAGGGACGGGCAGTGTGACGGCAAATACAAGTGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109367.10 ENSMUST00000165980.2 |
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| CDS CAA 72 bp | CACTGGGCAGGCTTTTTAGCAGGGCAGGCTCCGATTTaGATAGCATCATTTTTGCCTCCTTCCACAGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: HWAGFLAGQAPI*IASFLPPSTVQ Trigger: CTGGACTGTGGAAGGAGGCAAAAATGATGCTATCAAAATCGGAGCCTGCCCTGCTAAAAAGCCTGCCCAGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000109367.10 |
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