RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042045

Ensembl transcript IDs: ENSMUST00000048485.7

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGCAGAGACTTCCTCCTACATTCTTCCTTGGGGCTGGATTAGTTTaGTGGCAGACAGTGAGTTGGGGGAGGTATGTAGACACAGACCAG +
Preference number: 1 (lower is better)
Translates to: WQRLPPTFFLGAGLV*WQTVSWGRYVDTDQ
Trigger: CTGGTCTGTGTCTACATACCTCCCCCAACTCACTGTCTGCCATCAAACTAATCCAGCCCCAAGGAAGAATGTAGGAGGAAGTCTCTGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 90 bp AGAATCTGTCTTCCCTGTTTCTACTACTTCCCATCTCACCATCACTaGAGGTACAGGCTCACACCACTGTGCTGGGTTTTCACATGGGTT +
Preference number: 1 (lower is better)
Translates to: RICLPCFYYFPSHHH*RYRLTPLCWVFTWV
Trigger: AACCCATGTGAAAACCCAGCACAGTGGTGTGAGCCTGTACCTTCAGTGATGGTGAGATGGGAAGTAGTAGAAACAGGGAAGACAGATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 90 bp AGAGGGAGTCCCTCATGGCATGAAACTTTGTCAAGCAGGCTAGACTaGCCAACCAGAAAGTTTCCAGAATCTGTCTTCCCTGTTTCTACT +
Preference number: 1 (lower is better)
Translates to: RGSPSWHETLSSRLD*PTRKFPESVFPVST
Trigger: AGTAGAAACAGGGAAGACAGATTCTGGAAACTTTCTGGTTGGTCAGTCTAGCCTGCTTGACAAAGTTTCATGCCATGAGGGACTCCCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 90 bp AAGACTTCAGAGGACTTCTGTAATTTTAGTGAGCATTCTGGGCTCTaGCCCAACCCTTCTGCAGGATGGAATTATTCTTCCTCTGGTCAT +
Preference number: 1 (lower is better)
Translates to: KTSEDFCNFSEHSGL*PNPSAGWNYSSSGH
Trigger: ATGACCAGAGGAAGAATAATTCCATCCTGCAGAAGGGTTGGGTCAGAGCCCAGAATGCTCACTAAAATTACAGAAGTCCTCTGAAGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 90 bp GTGCTGGGTTTTCACATGGGTTTTGAGGATTCAGACTCAGGTCTTTaGACTTACAAGGTAAGGGCTTTACCAACTCAATCTATTGACCTC +
Preference number: 1 (lower is better)
Translates to: VLGFHMGFEDSDSGL*TYKVRALPTQSIDL
Trigger: GAGGTCAATAGATTGAGTTGGTAAAGCCCTTACCTTGTAAGTTCAAAGACCTGAGTCTGAATCCTCAAAACCCATGTGAAAACCCAGCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR CCA 90 bp CTTCCTCTGGTCATAGGATTCTCGAAGGAAAGGTTTGAGAAGCAATaGAATTATCTAAGATATGACACTCTGACTTGGCTTTCTTTCAGA +
Preference number: 1 (lower is better)
Translates to: LPLVIGFSKERFEKQ*NYLRYDTLTWLSFR
Trigger: TCTGAAAGAAAGCCAAGTCAGAGTGTCATATCTTAGATAATTCCATTGCTTCTCAAACCTTTCCTTCGAGAATCCTATGACCAGAGGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 90 bp TTACTCTGCATCATAAGAATCCAGTTTAATTTTAACCTGGTGACTTaGATAGTACATTTGCTAGGGAACAAAGCTAAGGCTCACTGGCTG +
Preference number: 1 (lower is better)
Translates to: LLCIIRIQFNFNLVT*IVHLLGNKAKAHWL
Trigger: CAGCCAGTGAGCCTTAGCTTTGTTCCCTAGCAAATGTACTATTCAAGTCACCAGGTTAAAATTAAACTGGATTCTTATGATGCAGAGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR-3UTR CCA 90 bp TCCCTGTTTCTACTACTTCCCATCTCACCATCACTGAAGGTACAGGCTCACACCCTGGCTGGCAAGCTTTaGGCAGCCTACAAGAACAGC +
Preference number: 2 (lower is better)
Translates to: SLFLLLPISPSLKVQAHTLAGKL*AAYKNS
Trigger: GCTGTTCTTGTAGGCTGCCCAAAGCTTGCCAGCCAG...GGTGTGAGCCTGTACCTTCAGTGATGGTGAGATGGGAAGTAGTAGAAACAGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR-3UTR CCA 90 bp TGGCAGACAGTGAGTTGGGGGAGGTATGTAGACACAGACCAGCAACTTGTTGTTCTAAGGCTCACTGGCTaGCAAGCTTTGGGCAGCCTA +
Preference number: 2 (lower is better)
Translates to: WQTVSWGRYVDTDQQLVVLRLTG*QALGSL
Trigger: TAGGCTGCCCAAAGCTTGCCAGCCAGTGAGCCTTAG...AACAACAAGTTGCTGGTCTGTGTCTACATACCTCCCCCAACTCACTGTCTGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR CAA 90 bp CTGGCAGAGACTTCCTCCTACATTCTTCCTTGGGGCTGGATTAGTTaGATGGCAGACAGTGAGTTGGGGGAGGTATGTAGACACAGACCA +
Preference number: 2 (lower is better)
Translates to: LAETSSYILPWGWIS*MADSELGEVCRHRP
Trigger: TGGTCTGTGTCTACATACCTCCCCCAACTCACTGTCTGCCATCAAACTAATCCAGCCCCAAGGAAGAATGTAGGAGGAAGTCTCTGCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR-3UTR CCA 90 bp CAGACAGTGAGTTGGGGGAGGTATGTAGACACAGACCAGCAACTTGTTGTTACTGTGGGTCAGAGATGCTaGAGGAGCCAGAAGCAGCAT +
Preference number: 2 (lower is better)
Translates to: QTVSWGRYVDTDQQLVVTVGQRC*RSQKQH
Trigger: ATGCTGCTTCTGGCTCCTCCAGCATCTCTGACCCAC...AGTAACAACAAGTTGCTGGTCTGTGTCTACATACCTCCCCCAACTCACTGTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR CAA 90 bp TACATTCTTCCTTGGGGCTGGATTAGTTTGATGGCAGACAGTGAGTaGGGGGAGGTATGTAGACACAGACCAGCAACTTGTTGTTACTCT +
Preference number: 2 (lower is better)
Translates to: YILPWGWISLMADSE*GEVCRHRPATCCYS
Trigger: AGAGTAACAACAAGTTGCTGGTCTGTGTCTACATACCTCCCCCAACTCACTGTCTGCCATCAAACTAATCCAGCCCCAAGGAAGAATGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR-3UTR CCA 90 bp AGCCCATTTCTTGTGAAAGCTATGGATAAAGCACAAGACTTCAGAGGACTTCTGTGGCAGACAGTGAGTTaGGGGAGGTATGTAGACACA +
Preference number: 2 (lower is better)
Translates to: SPFLVKAMDKAQDFRGLLWQTVS*GRYVDT
Trigger: TGTGTCTACATACCTCCCCCAACTCACTGTCTGCCA...CAGAAGTCCTCTGAAGTCTTGTGCTTTATCCATAGCTTTCACAAGAAATGGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 72 bp TGCCAAGGACCTAGTGCAGCGGTGTGTCAGGCATTGTaGGTGTGGGTCAGAGATGCTGGAGGAGCCAGAAGC +
Preference number: 3 (lower is better)
Translates to: CQGPSAAVCQAL*VWVRDAGGARS
Trigger: GCTTCTGGCTCCTCCAGCATCTCTGACCCACACTCACAATGCCTGACACACCGCTGCACTAGGTCCTTGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR CCA 72 bp AGGAGCCAGAAGCAGCATCTCATGACAATAGAGCATTaGAAGCTCGGGGCACACAGCAGTCACTCCCTGGAG +
Preference number: 3 (lower is better)
Translates to: RSQKQHLMTIEH*KLGAHSSHSLE
Trigger: CTCCAGGGAGTGACTGCTGTGTGCCCCGAGCTTCCAATGCTCTATTGTCATGAGATGCTGCTTCTGGCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR CCA 72 bp GGTGTGTCAGGCATTGTGAGTGTGGGTCAGAGATGCTaGAGGAGCCAGAAGCAGCATCTCATGACAATAGAG +
Preference number: 3 (lower is better)
Translates to: GVSGIVSVGQRC*RSQKQHLMTIE
Trigger: CTCTATTGTCATGAGATGCTGCTTCTGGCTCCTCCAGCATCTCTGACCCACACTCACAATGCCTGACACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR CCA 72 bp CTGGCAGAGACTTCCTCCTACATTCTTCCTTGGGGCTaGATTAGTTTGATGGCAGACAGTGAGTTGGGGGAG +
Preference number: 3 (lower is better)
Translates to: LAETSSYILPWG*ISLMADSELGE
Trigger: CTCCCCCAACTCACTGTCTGCCATCAAACTAATCCAGCCCCAAGGAAGAATGTAGGAGGAAGTCTCTGCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR-3UTR CAA 90 bp CAGACAGTGAGTTGGGGGAGGTATGTAGACACAGACCAGCAACTTGTTGTTACTACTGGCTGGCAAGCTTaGGGCAGCCTACAAGAACAG +
Preference number: 3 (lower is better)
Translates to: QTVSWGRYVDTDQQLVVTTGWQA*GSLQEQ
Trigger: CTGTTCTTGTAGGCTGCCCAAAGCTTGCCAGCCAGT...AGTAACAACAAGTTGCTGGTCTGTGTCTACATACCTCCCCCAACTCACTGTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 72 bp CTTCCTCCTACATTCTTCCTTGGGGCTGGATTAGTTTaGTGGCAGACAGTGAGTTGGGGGAGGTATGTAGAC +
Preference number: 3 (lower is better)
Translates to: LPPTFFLGAGLV*WQTVSWGRYVD
Trigger: GTCTACATACCTCCCCCAACTCACTGTCTGCCATCAAACTAATCCAGCCCCAAGGAAGAATGTAGGAGGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 72 bp CTTCCCTGTTTCTACTACTTCCCATCTCACCATCACTaGAGGTACAGGCTCACACCACTGTGCTGGGTTTTC +
Preference number: 3 (lower is better)
Translates to: LPCFYYFPSHHH*RYRLTPLCWVF
Trigger: GAAAACCCAGCACAGTGGTGTGAGCCTGTACCTTCAGTGATGGTGAGATGGGAAGTAGTAGAAACAGGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR-3UTR CAA 90 bp TCCCTGTTTCTACTACTTCCCATCTCACCATCACTGAAGGTACAGGCTCACACCTTCAGACTCAGGTCTTaGAACTTACAAGGTAAGGGC +
Preference number: 3 (lower is better)
Translates to: SLFLLLPISPSLKVQAHTFRLRS*NLQGKG
Trigger: GCCCTTACCTTGTAAGTTCAAAGACCTGAGTCTGAA...GGTGTGAGCCTGTACCTTCAGTGATGGTGAGATGGGAAGTAGTAGAAACAGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 72 bp GGCTCACACCACTGTGCTGGGTTTTCACATGGGTTTTaGGGATTCAGACTCAGGTCTTTGAACTTACAAGGT +
Preference number: 3 (lower is better)
Translates to: GSHHCAGFSHGF*GFRLRSLNLQG
Trigger: ACCTTGTAAGTTCAAAGACCTGAGTCTGAATCCTCAAAACCCATGTGAAAACCCAGCACAGTGGTGTGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 72 bp CCCTCATGGCATGAAACTTTGTCAAGCAGGCTAGACTaGCCAACCAGAAAGTTTCCAGAATCTGTCTTCCCT +
Preference number: 3 (lower is better)
Translates to: PSWHETLSSRLD*PTRKFPESVFP
Trigger: AGGGAAGACAGATTCTGGAAACTTTCTGGTTGGTCAGTCTAGCCTGCTTGACAAAGTTTCATGCCATGAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 72 bp AACTTACAAGGTAAGGGCTTTACCAACTCAATCTATTaGCCTCCTGAGCCCATTTCTTGTGAAAGCTATGGA +
Preference number: 3 (lower is better)
Translates to: NLQGKGFTNSIY*PPEPISCESYG
Trigger: TCCATAGCTTTCACAAGAAATGGGCTCAGGAGGTCAATAGATTGAGTTGGTAAAGCCCTTACCTTGTAAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 72 bp TTTCACATGGGTTTTGAGGATTCAGACTCAGGTCTTTaGACTTACAAGGTAAGGGCTTTACCAACTCAATCT +
Preference number: 3 (lower is better)
Translates to: FHMGFEDSDSGL*TYKVRALPTQS
Trigger: AGATTGAGTTGGTAAAGCCCTTACCTTGTAAGTTCAAAGACCTGAGTCTGAATCCTCAAAACCCATGTGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR TCA 72 bp ATCATAAGAATCCAGTTTAATTTTAACCTGGTGACTTaGATAGTACATTTGCTAGGGAACAAAGCTAAGGCT +
Preference number: 3 (lower is better)
Translates to: IIRIQFNFNLVT*IVHLLGNKAKA
Trigger: AGCCTTAGCTTTGTTCCCTAGCAAATGTACTATTCAAGTCACCAGGTTAAAATTAAACTGGATTCTTATGAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR CAA 72 bp GAGGAGCCAGAAGCAGCATCTCATGACAATAGAGCATaGGAAGCTCGGGGCACACAGCAGTCACTCCCTGGA +
Preference number: 4 (lower is better)
Translates to: EEPEAASHDNRA*EARGTQQSLPG
Trigger: TCCAGGGAGTGACTGCTGTGTGCCCCGAGCTTCCAATGCTCTATTGTCATGAGATGCTGCTTCTGGCTCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR CAA 72 bp CCTTGGGGCTGGATTAGTTTGATGGCAGACAGTGAGTaGGGGGAGGTATGTAGACACAGACCAGCAACTTGT +
Preference number: 4 (lower is better)
Translates to: PWGWISLMADSE*GEVCRHRPATC
Trigger: ACAAGTTGCTGGTCTGTGTCTACATACCTCCCCCAACTCACTGTCTGCCATCAAACTAATCCAGCCCCAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR CAA 72 bp ACTTCCTCCTACATTCTTCCTTGGGGCTGGATTAGTTaGATGGCAGACAGTGAGTTGGGGGAGGTATGTAGA +
Preference number: 4 (lower is better)
Translates to: TSSYILPWGWIS*MADSELGEVCR
Trigger: TCTACATACCTCCCCCAACTCACTGTCTGCCATCAAACTAATCCAGCCCCAAGGAAGAATGTAGGAGGAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7
3UTR CAA 72 bp AGGCTCACACCACTGTGCTGGGTTTTCACATGGGTTTaGAGGATTCAGACTCAGGTCTTTGAACTTACAAGG +
Preference number: 4 (lower is better)
Translates to: RLTPLCWVFTWV*RIQTQVFELTR
Trigger: CCTTGTAAGTTCAAAGACCTGAGTCTGAATCCTCAAAACCCATGTGAAAACCCAGCACAGTGGTGTGAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048485.7