RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLITRK3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048304

Ensembl transcript IDs: ENSMUST00000059407.9, ENSMUST00000192477.2

Found 269 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGTAGGAGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTaGAGCTATGTAGAGGAAGAAATAGATCAAACCCGAACTAAGCGT +
Preference number: 1 (lower is better)
Translates to: GRRDAVSCTLGVKGT*SYVEEEIDQTRTKR
Trigger: ACGCTTAGTTCGGGTTTGATCTATTTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCTCCTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR CAA 90 bp TATGTAGAGGAAGAAATAGATCAAACCCGAACTAAGCGTATTAAGTaGCAGGGGAGGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGC +
Preference number: 2 (lower is better)
Translates to: YVEEEIDQTRTKRIK*QGRCVCVCVCARAR
Trigger: GCGCGCGCGCGCGCACACACACACACACACACACCTCCCCTGCAACTTAATACGCTTAGTTCGGGTTTGATCTATTTCTTCCTCTACATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR-3UTR GCA 90 bp GAGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGACTAAGCGTATTAAGTTaGAGGGGAGGTGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: ERCRELYTRSEGHVELCRLSVLS*RGGVCV
Trigger: CACACACACACCTCCCCTGCAACTTAATACGCTTAG...TCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR-3UTR GCA 90 bp AGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGTTGCTGGCAAAAGTCTaGGAAGGCACTTCATTGATT +
Preference number: 2 (lower is better)
Translates to: RDAVSCTLGVKGTWSYVELLAKV*EGTSLI
Trigger: AATCAATGAAGTGCCTTCGCAGACTTTTGCCAGCAA...CTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR-3UTR GCA 90 bp GCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAACATGTACAGAATCTGTaGCATGATGGGAAAAGGAGA +
Preference number: 2 (lower is better)
Translates to: AVSCTLGVKGTWSYVEEEHVQNL*HDGKRR
Trigger: TCTCCTTTTCCCATCATGGCACAGATTCTGTACATG...TTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR-3UTR GCA 90 bp GAGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAAAGCATGCAGCAAACTaGATTGTTAATACATGTACA +
Preference number: 2 (lower is better)
Translates to: ERCRELYTRSEGHVELCRKHAAN*IVNTCT
Trigger: TGTACATGTATTAACAATGCAGTTTGCTGCATGCTT...TCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR-3UTR GCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAAAATAATGATAACATTTaGTGGCAAAAGTCTGCGAAG +
Preference number: 2 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQNNDNI*WQKSAK
Trigger: CTTCGCAGACTTTTGCCAGCAAATGTTATCATTATT...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
3UTR-3UTR CCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACAATGATAACATTTGCTaGCAAAAGTCTGCGAAGGCA +
Preference number: 2 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYNDNIC*QKSAKA
Trigger: TGCCTTCGCAGACTTTTGCCAGCAAATGTTATCATT...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
3UTR GCA 72 bp ATTAAGTTGCAGGGGAGGTGTGTGTGTGTGTGTGTGTaGGCGCGCGCGCGCGCGTGTGTACGCGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: IKLQGRCVCVCV*ARARACVRVCV
Trigger: CACACACACGCGTACACACGCGCGCGCGCGCGCGCACACACACACACACACACACCTCCCCTGCAACTTAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR GCA 72 bp GTGCGTGTGTGTGTGCGTGTGCGTGTGTGTGTGTACTaGACCCAGTGCAGGCTGAGGGACCTAAGTGTATGT +
Preference number: 3 (lower is better)
Translates to: VRVCVRVRVCVY*TQCRLRDLSVC
Trigger: ACATACACTTAGGTCCCTCAGCCTGCACTGGGTGCAGTACACACACACACGCACACGCACACACACACGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR GCA 72 bp TGTGTGCGTGTGCGTGTGTGTGTGTACTGCACCCAGTaGAGGCTGAGGGACCTAAGTGTATGTAGGGAGTTG +
Preference number: 3 (lower is better)
Translates to: CVRVRVCVYCTQ*RLRDLSVCREL
Trigger: CAACTCCCTACATACACTTAGGTCCCTCAGCCTGCACTGGGTGCAGTACACACACACACGCACACGCACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR CCA 72 bp GATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTaGAGCTATGTAGAGGAAGAAATAGATCAAACCCGA +
Preference number: 3 (lower is better)
Translates to: DAVSCTLGVKGT*SYVEEEIDQTR
Trigger: TCGGGTTTGATCTATTTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR-3UTR CAA 90 bp CTCGAATGTGACTTTTCCCAGGGTGGTAGGAGAGATGCCGTGAGCTGTACACTAAGGGGGAGCACACTTTaGTATTCTCTAGTTATCATG +
Preference number: 3 (lower is better)
Translates to: LECDFSQGGRRDAVSCTLRGSTL*YSLVIM
Trigger: CATGATAACTAGAGAATACAAAAGTGTGCTCCCCCT...TAGTGTACAGCTCACGGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR-3UTR CAA 90 bp GCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAATGCGAAGGCACTTCATaGATTAATGATCTGAGTATG +
Preference number: 3 (lower is better)
Translates to: AVSCTLGVKGTWSYVEEECEGTS*INDLSM
Trigger: CATACTCAGATCATTAATCAATGAAGTGCCTTCGCA...TTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR TCA 72 bp ATATGTATAAGAAAGTGCAGATGTTCTCAAAAATCTTaGCATCAAGATGAAATGTCACGAGGAGGGTGGCTC +
Preference number: 3 (lower is better)
Translates to: ICIRKCRCSQKS*HQDEMSRGGWL
Trigger: GAGCCACCCTCCTCGTGACATTTCATCTTGATGTCAAGATTTTTGAGAACATCTGCACTTTCTTATACATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
3UTR-3UTR CAA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACAGGGGGAGCACACTTTaGTATTCTCTAGTTATCATG +
Preference number: 3 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYRGSTL*YSLVIM
Trigger: CATGATAACTAGAGAATACAAAAGTGTGCTCCCCCT...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAAATCAACACAGAAAGTaGCACAGGGCCCCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: AVSCTLGVKGTWSYVEEENQHRK*HRAPWG
Trigger: CCCCCAGGGGGCCCTGTGCCACTTTCTGTGTTGATT...TTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp AGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGATATACTCGTACACGTaGCCCACGGGAGGGGCTTTC +
Preference number: 4 (lower is better)
Translates to: RDAVSCTLGVKGTWSYVEIYSYT*PTGGAF
Trigger: GAAAGCCCCTCCCGTGGGTCACGTGTACGAGTATAT...CTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAAGTTCTTCCTCAAGTTaGGCCGAGCCAGGGATGTAC +
Preference number: 4 (lower is better)
Translates to: AVSCTLGVKGTWSYVEEESSSSS*AEPGMY
Trigger: GTACATCCCTGGCTCGGCTCAACTTGAGGAAGAACT...TTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACACCCTCCACCTACCCCTaGAACCCCACCAACTGCCGA +
Preference number: 4 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTPSTYP*NPTNCR
Trigger: TCGGCAGTTGGTGGGGTTTCAGGGGTAGGTGGAGGG...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp GAGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGCTCCATCAGGCTTCTaGCAATGTGATCCAGCATCC +
Preference number: 4 (lower is better)
Translates to: ERCRELYTRSEGHVELCRAPSGF*QCDPAS
Trigger: GGATGCTGGATCACATTGGCAGAAGCCTGATGGAGC...TCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCGCACATCACGGTGGGTaGGGTTCTCGGGGGTCCTAC +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVAHHGG*GSRGSY
Trigger: GTAGGACCCCCGAGAACCTCACCCACCGTGATGTGC...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GAGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGATCCTCAAACAGCCGGTaGCATTGCATCTGGATTCCT +
Preference number: 4 (lower is better)
Translates to: ERCRELYTRSEGHVELCRSSNSR*HCIWIP
Trigger: AGGAATCCAGATGCAATGTCACCGGCTGTTTGAGGA...TCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTCCCTCCACCTACCCCTaGAACCCCACCAACTGCCGA +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSPSTYP*NPTNCR
Trigger: TCGGCAGTTGGTGGGGTTTCAGGGGTAGGTGGAGGG...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp CTCGAATGTGACTTTTCCCAGGGTGGTAGGAGAGATGCCGTGAGCTGTACACTACATGAGGCTGAAGGCTaGAGGTTGGATTTCCCGGAT +
Preference number: 4 (lower is better)
Translates to: LECDFSQGGRRDAVSCTLHEAEG*RLDFPD
Trigger: ATCCGGGAAATCCAACCTGCAGCCTTCAGCCTCATG...TAGTGTACAGCTCACGGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp GCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAGGTGTTTCTGCAAACTaGTCACTTCCCAAGAGCACC +
Preference number: 4 (lower is better)
Translates to: AVSCTLGVKGTWSYVEEEGVSAN*SLPKST
Trigger: GGTGCTCTTGGGAAGTGAGCAGTTTGCAGAAACACC...TTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp AGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGGATTCTCTTCTAGCTaGAGCTCCATCAGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: RDAVSCTLGVKGTWSYVEGFSSS*SSIRLL
Trigger: CAGAAGCCTGATGGAGCTCCAGCTAGAAGAGAATCC...CTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCGTGCGCACATCACGGTaGGTGAGGTTCTCGGGGGTC +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVVRTSR*VRFSGV
Trigger: GACCCCCGAGAACCTCACCCACCGTGATGTGCGCAC...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACGCACATCACGGTGGGTaGGGTTCTCGGGGGTCCTAC +
Preference number: 4 (lower is better)
Translates to: CEGTSLINDLSMALPQNHAHHGG*GSRGSY
Trigger: GTAGGACCCCCGAGAACCTCACCCACCGTGATGTGC...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp GAGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGACCAGGTTGGGCAATATaGAGCATCTCTGGGCATAAA +
Preference number: 4 (lower is better)
Translates to: ERCRELYTRSEGHVELCRPGWAI*SISGHK
Trigger: TTTATGCCCAGAGATGCTGCATATTGCCCAACCTGG...TCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAGGTCTAGTAGCAGACTaGCACCACCACAACCTCCCC +
Preference number: 4 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTGLVAD*HHHNLP
Trigger: GGGGAGGTTGTGGTGGTGGCAGTCTGCTACTAGACC...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp AGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGGCATTCAAGGGCCTTaGAAGGAGTTCAGAGATGTT +
Preference number: 4 (lower is better)
Translates to: RDAVSCTLGVKGTWSYVEGIQGP*KEFRDV
Trigger: AACATCTCTGAACTCCTTCCAAGGCCCTTGAATGCC...CTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAAGTGCGCACATCACGGTaGGTGAGGTTCTCGGGGGTC +
Preference number: 4 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQVRTSR*VRFSGV
Trigger: GACCCCCGAGAACCTCACCCACCGTGATGTGCGCAC...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTTGGCACAGGGCCCCCTaGGGGAGAGAACTCATAAGG +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSWHRAP*GRELIR
Trigger: CCTTATGAGTTCTCTCCCCCAGGGGGCCCTGTGCCA...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCTGGCACAGGGCCCCCTaGGGGAGAGAACTCATAAGG +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVWHRAP*GRELIR
Trigger: CCTTATGAGTTCTCTCCCCCAGGGGGCCCTGTGCCA...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp AGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAGCGGTATATCTTCTaGATAAGATTGCTGCTCAGG +
Preference number: 4 (lower is better)
Translates to: RDAVSCTLGVKGTWSYVEERYIF*IRLLLR
Trigger: CCTGAGCAGCAATCTTATTCAGAAGATATACCGCTC...CTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CTCGAATGTGACTTTTCCCAGGGTGGTAGGAGAGATGCCGTGAGCTGTACACTACCCAAGGATTCTCGTTaGGATCTATCTGCACAATGG +
Preference number: 4 (lower is better)
Translates to: LECDFSQGGRRDAVSCTLPKDSR*DLSAQW
Trigger: CCATTGTGCAGATAGATCTCAACGAGAATCCTTGGG...TAGTGTACAGCTCACGGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp CTCGAATGTGACTTTTCCCAGGGTGGTAGGAGAGATGCCGTGAGCTGTACACTAGCCAGGCATTCTCCTTaGTTGAAGATAAGTGGGGAA +
Preference number: 4 (lower is better)
Translates to: LECDFSQGGRRDAVSCTLARHSP*LKISGE
Trigger: TTCCCCACTTATCTTCAAGCAAGGAGAATGCCTGGC...TAGTGTACAGCTCACGGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAACCACAAATCCCACTGTaGACGGAGCAGGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQPQIPL*TEQAVA
Trigger: GGCCACAGCCTGCTCCGTGCACAGTGGGATTTGTGG...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCCACAAATCCCACTGTaGACGGAGCAGGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNPQIPL*TEQAVA
Trigger: GGCCACAGCCTGCTCCGTGCACAGTGGGATTTGTGG...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAAACTTCGCAGTAGCATaGATCAAAACAGGGCTCATC +
Preference number: 4 (lower is better)
Translates to: AVSCTLGVKGTWSYVEEENFAVA*IKTGLI
Trigger: GATGAGCCCTGTTTTGATCCATGCTACTGCGAAGTT...TTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGGCTGGGGTGGAGATaGTCCAGGTTGGGCAATATG +
Preference number: 4 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTRLGWR*SRLGNM
Trigger: CATATTGCCCAACCTGGACCATCTCCACCCCAGCCT...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CTCGAATGTGACTTTTCCCAGGGTGGTAGGAGAGATGCCGTGAGCTGTACACTAAGAGTTCAGTCTTCTTaGTTTCACGGAGATCCTTCC +
Preference number: 4 (lower is better)
Translates to: LECDFSQGGRRDAVSCTLRVQSS*FHGDPS
Trigger: GGAAGGATCTCCGTGAAATCAAGAAGACTGAACTCT...TAGTGTACAGCTCACGGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCATATACTCGTACACGTaGCCCACGGGAGGGGCTTTC +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVIYSYT*PTGGAF
Trigger: GAAAGCCCCTCCCGTGGGTCACGTGTACGAGTATAT...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGCCAGGGATGTACCTaGAAAGGCATCAGTTGGCAG +
Preference number: 4 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTSQGCT*KGISWQ
Trigger: CTGCCAACTGATGCCTTTGCAGGTACATCCCTGGCT...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAGGCTGGGGTGGAGATaGTCCAGGTTGGGCAATATG +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVRLGWR*SRLGNM
Trigger: CATATTGCCCAACCTGGACCATCTCCACCCCAGCCT...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATAATCAACACAGAAAGTaGCACAGGGCCCCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNNQHRK*HRAPWG
Trigger: CCCCCAGGGGGCCCTGTGCCACTTTCTGTGTTGATT...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCCCACCATTCTTCTCATaGTGGCGGAACCCAGCCAAG +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVPPFFS*WRNPAK
Trigger: CTTGGCTGGGTTCCGCCACCATGAGAAGAATGGTGG...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTCCACCATTCTTCTCATaGTGGCGGAACCCAGCCAAG +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSPPFFS*WRNPAK
Trigger: CTTGGCTGGGTTCCGCCACCATGAGAAGAATGGTGG...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
3UTR CAA 72 bp GAAGAAATAGATCAAACCCGAACTAAGCGTATTAAGTaGCAGGGGAGGTGTGTGTGTGTGTGTGTGTGCGCG +
Preference number: 4 (lower is better)
Translates to: EEIDQTRTKRIK*QGRCVCVCVCA
Trigger: CGCGCACACACACACACACACACACCTCCCCTGCAACTTAATACGCTTAGTTCGGGTTTGATCTATTTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCAGTTCTTCCTCAAGTTaGGCCGAGCCAGGGATGTAC +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVSSSSS*AEPGMY
Trigger: GTACATCCCTGGCTCGGCTCAACTTGAGGAAGAACT...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCACCTACCACGCTGACTaGGCTGATGGTTTCGATCCA +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVTYHAD*ADGFDP
Trigger: TGGATCGAAACCATCAGCTCAGTCAGCGTGGTAGGT...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGAGAACTCATAAGGTaGTGCACTTGTTGGTCCCCC +
Preference number: 4 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTRELIR*CTCWSP
Trigger: GGGGGACCAACAAGTGCATCACCTTATGAGTTCTCT...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACGGGTTTGGTGGTCTGTaGAGCCCTTTCCAGCTGAGA +
Preference number: 4 (lower is better)
Translates to: CEGTSLINDLSMALPQNHGFGGL*SPFQLR
Trigger: TCTCAGCTGGAAAGGGCTTCACAGACCACCAAACCC...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTGCTCCATCAGGCTTCTaGCAATGTGATCCAGCATCC +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSAPSGF*QCDPAS
Trigger: GGATGCTGGATCACATTGGCAGAAGCCTGATGGAGC...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp CTCGAATGTGACTTTTCCCAGGGTGGTAGGAGAGATGCCGTGAGCTGTACACTATCGTTGAGATCTATCTaGACAATGGCATTCAGGTGT +
Preference number: 4 (lower is better)
Translates to: LECDFSQGGRRDAVSCTLSLRSI*TMAFRC
Trigger: ACACCTGAATGCCATTGTGCAGATAGATCTCAACGA...TAGTGTACAGCTCACGGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCGTGGTCTCGGTGTTCTaGGCTGTTTGGTGGGTTTTG +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVVVSVF*AVWWVL
Trigger: CAAAACCCACCAAACAGCCCAGAACACCGAGACCAC...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAACTCATCGAATTCCTCTaGAGATACAGTTTAAAAGGT +
Preference number: 4 (lower is better)
Translates to: AVSCTLGVKGTWSYVEEELIEFL*RYSLKG
Trigger: ACCTTTTAAACTGTATCTTCAGAGGAATTCGATGAG...TTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CTCGAATGTGACTTTTCCCAGGGTGGTAGGAGAGATGCCGTGAGCTGTACACTATCAAGCCAAGGTCATTaGTATGCAAATTGCATGTAC +
Preference number: 4 (lower is better)
Translates to: LECDFSQGGRRDAVSCTLSSQGH*YANCMY
Trigger: GTACATGCAATTTGCATATCAATGACCTTGGCTTGA...TAGTGTACAGCTCACGGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATACCTACCACGCTGACTaGGCTGATGGTTTCGATCCA +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNTYHAD*ADGFDP
Trigger: TGGATCGAAACCATCAGCTCAGTCAGCGTGGTAGGT...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCAGAGAAGGGTTTCTTTaGGCCTGGCATCCTGCTGTA +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVREGFL*AWHPAV
Trigger: TACAGCAGGATGCCAGGCTCAAAGAAACCCTTCTCT...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp GCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAATTGAATGTCCTGCAATaGATTGTTCCCAAGGTTAAT +
Preference number: 4 (lower is better)
Translates to: AVSCTLGVKGTWSYVEEELNVLQ*IVPKVN
Trigger: ATTAACCTTGGGAACAATGCATTGCAGGACATTCAA...TTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACAGCCAGGGATGTACCTaGAAAGGCATCAGTTGGCAG +
Preference number: 4 (lower is better)
Translates to: CEGTSLINDLSMALPQNHSQGCT*KGISWQ
Trigger: CTGCCAACTGATGCCTTTGCAGGTACATCCCTGGCT...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACGGTCTAGTAGCAGACTaGCACCACCACAACCTCCCC +
Preference number: 4 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHGLVAD*HHHNLP
Trigger: GGGGAGGTTGTGGTGGTGGCAGTCTGCTACTAGACC...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp AGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAATAGATTTGAGCCTGGCATCCTaGTGTAAGTCTGGATATTGC +
Preference number: 4 (lower is better)
Translates to: SCTLGVKGTWSYVEEEIDLSLAS*CKSGYC
Trigger: GCAATATCCAGACTTACAGCAGGATGCCAGGCTCAA...ATCTATTTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCCCAGGATATAAAGCCTaGGATGTCGAAGGTGGTCTC +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVPGYKA*DVEGGL
Trigger: GAGACCACCTTCGACATCCCAGGCTTTATATCCTGG...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCTGAAGGCTGCAGGTTaGATTTCCCGGATGACGTTG +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNLKAAG*ISRMTL
Trigger: CAACGTCATCCGGGAAATCCAACCTGCAGCCTTCAG...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCCTTTTGGGGGTTTGGTaGTCTGTGAAGCCCTTTCCA +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVLLGVW*SVKPFP
Trigger: TGGAAAGGGCTTCACAGACCACCAAACCCCCAAAAG...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CTCGAATGTGACTTTTCCCAGGGTGGTAGGAGAGATGCCGTGAGCTGTACACTACTGTCACAATGTATGTaGAAGAGGCTTTCTTTAACT +
Preference number: 4 (lower is better)
Translates to: LECDFSQGGRRDAVSCTLLSQCM*KRLSLT
Trigger: AGTTAAAGAAAGCCTCTTTCACATACATTGTGACAG...TAGTGTACAGCTCACGGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCCCCAAGGATTCTCGTTaGGATCTATCTGCACAATGG +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVPKDSR*DLSAQW
Trigger: CCATTGTGCAGATAGATCTCAACGAGAATCCTTGGG...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACAGAGAACTCATAAGGTaGTGCACTTGTTGGTCCCCC +
Preference number: 4 (lower is better)
Translates to: CEGTSLINDLSMALPQNHRELIR*CTCWSP
Trigger: GGGGGACCAACAAGTGCATCACCTTATGAGTTCTCT...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGCAACAAAGACAGCTaGGAAGAACAGAACCAAGAG +
Preference number: 4 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTSNKDS*EEQNQE
Trigger: CTCTTGGTTCTGTTCTTCTCAGCTGTCTTTGTTGCT...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACTCCTCAAACAGCCGGTaGCATTGCATCTGGATTCCT +
Preference number: 4 (lower is better)
Translates to: CEGTSLINDLSMALPQNHSSNSR*HCIWIP
Trigger: AGGAATCCAGATGCAATGTCACCGGCTGTTTGAGGA...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACGGGTTTGGTGGTCTGTaGAGCCCTTTCCAGCTGAGA +
Preference number: 4 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHGFGGL*SPFQLR
Trigger: TCTCAGCTGGAAAGGGCTTCACAGACCACCAAACCC...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTGCCAGGCATTCTCCTTaGTTGAAGATAAGTGGGGAA +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSARHSP*LKISGE
Trigger: TTCCCCACTTATCTTCAAGCAAGGAGAATGCCTGGC...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATGGACTAAGTCGCAAGTaGAGTCCCAAGGATTCTCGT +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNGLSRK*SPKDSR
Trigger: ACGAGAATCCTTGGGACTGCACTTGCGACTTAGTCC...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACGGTGTTTCTGCAAACTaGTCACTTCCCAAGAGCACC +
Preference number: 4 (lower is better)
Translates to: CEGTSLINDLSMALPQNHGVSAN*SLPKST
Trigger: GGTGCTCTTGGGAAGTGAGCAGTTTGCAGAAACACC...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTCTCCTTGGGTGTTTCTaGAAACTGCTCACTTCCCAA +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSLLGCF*KLLTSQ
Trigger: TTGGGAAGTGAGCAGTTTGCAGAAACACCCAAGGAG...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCCTCCTTGGGTGTTTCTaGAAACTGCTCACTTCCCAA +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVLLGCF*KLLTSQ
Trigger: TTGGGAAGTGAGCAGTTTGCAGAAACACCCAAGGAG...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCCGGAGATCCTTCCCATaGAAATGGAAAGGTGTCTCA +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVRRSFP*KWKGVS
Trigger: TGAGACACCTTTCCATTTCCATGGGAAGGATCTCCG...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAGAGGAAGGTTTAGTTaGCCAGGCATTCTCCTTGCT +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVRGRFS*PGILLA
Trigger: AGCAAGGAGAATGCCTGGCCAACTAAACCTTCCTCT...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAACCAGGATATAAAGCCTaGGATGTCGAAGGTGGTCTC +
Preference number: 4 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQPGYKA*DVEGGL
Trigger: GAGACCACCTTCGACATCCCAGGCTTTATATCCTGG...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCTCAGGTACAGCTTCTTaGCATTCAAGGGCCTTGGAA +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVSGTAS*HSRALE
Trigger: TTCCAAGGCCCTTGAATGCCAAGAAGCTGTACCTGA...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTTGCAAAGGCATCAGTTaGCAGAGTCCTCAGCAAGTT +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSCKGIS*QSPQQV
Trigger: AACTTGCTGAGGACTCTGCCAACTGATGCCTTTGCA...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCTGCAAAGGCATCAGTTaGCAGAGTCCTCAGCAAGTT +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVCKGIS*QSPQQV
Trigger: AACTTGCTGAGGACTCTGCCAACTGATGCCTTTGCA...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACCTTTTGGGGGTTTGGTaGTCTGTGAAGCCCTTTCCA +
Preference number: 4 (lower is better)
Translates to: CEGTSLINDLSMALPQNHLLGVW*SVKPFP
Trigger: TGGAAAGGGCTTCACAGACCACCAAACCCCCAAAAG...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACACTCATCTATTTCTTCTaGGTCCTCTATCAGGGGAAT +
Preference number: 4 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTLIYFF*VLYQGN
Trigger: ATTCCCCTGATAGAGGACTCAGAAGAAATAGATGAG...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAGAGTTCAGTCTTCTTaGTTTCACGGAGATCCTTCC +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVRVQSS*FHGDPS
Trigger: GGAAGGATCTCCGTGAAATCAAGAAGACTGAACTCT...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCCTCTTTCTTTGCAGTTaGCAGTCAAGCCAAGGTCAT +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVLFLCS*QSSQGH
Trigger: ATGACCTTGGCTTGACTGTCAACTGCAAAGAAAGAG...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTGAGCGGTATATCTTCTaGATAAGATTGCTGCTCAGG +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSERYIF*IRLLLR
Trigger: CCTGAGCAGCAATCTTATTCAGAAGATATACCGCTC...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCAGCAACAAAGACAGCTaGGAAGAACAGAACCAAGAG +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVSNKDS*EEQNQE
Trigger: CTCTTGGTTCTGTTCTTCTCAGCTGTCTTTGTTGCT...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp CTCGAATGTGACTTTTCCCAGGGTGGTAGGAGAGATGCCGTGAGCTGTACACTAATCCTAGAGCAATTGTaGTTAGAAGAATTATCCACA +
Preference number: 4 (lower is better)
Translates to: LECDFSQGGRRDAVSCTLILEQL*LEELST
Trigger: TGTGGATAATTCTTCTAAGCACAATTGCTCTAGGAT...TAGTGTACAGCTCACGGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACCATGAGGCTGAAGGCTaGAGGTTGGATTTCCCGGAT +
Preference number: 4 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHHEAEG*RLDFPD
Trigger: ATCCGGGAAATCCAACCTGCAGCCTTCAGCCTCATG...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCATGGTTTCGATCCACTaGTTAAAGGGGACTAAGTCG +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVMVSIH*LKGTKS
Trigger: CGACTTAGTCCCCTTTAAGCAGTGGATCGAAACCAT...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAACCAGGTTGGGCAATATaGAGCATCTCTGGGCATAAA +
Preference number: 4 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQPGWAI*SISGHK
Trigger: TTTATGCCCAGAGATGCTGCATATTGCCCAACCTGG...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp AGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAATAGATTTAATTTGGGCACTGTaGCATAGAGACAGTCCACAA +
Preference number: 4 (lower is better)
Translates to: SCTLGVKGTWSYVEEEIDLIWAL*HRDSPQ
Trigger: TTGTGGACTGTCTCTATGGCACAGTGCCCAAATTAA...ATCTATTTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCAACTTCGCAGTAGCATaGATCAAAACAGGGCTCATC +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVNFAVA*IKTGLI
Trigger: GATGAGCCCTGTTTTGATCCATGCTACTGCGAAGTT...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTTCCTTCCCATGGAAATaGAAAGGTGTCTCACAGGTA +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSSFPWK*KGVSQV
Trigger: TACCTGTGAGACACCTTTCCATTTCCATGGGAAGGA...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAACGGAGATCCTTCCCATaGAAATGGAAAGGTGTCTCA +
Preference number: 4 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQRRSFP*KWKGVS
Trigger: TGAGACACCTTTCCATTTCCATGGGAAGGATCTCCG...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAAAGAGGAAGGTTTAGTTaGCCAGGCATTCTCCTTGCT +
Preference number: 4 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQRGRFS*PGILLA
Trigger: AGCAAGGAGAATGCCTGGCCAACTAAACCTTCCTCT...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAATCAGGTACAGCTTCTTaGCATTCAAGGGCCTTGGAA +
Preference number: 4 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQSGTAS*HSRALE
Trigger: TTCCAAGGCCCTTGAATGCCAAGAAGCTGTACCTGA...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAACCTCGGAACATACCTaGAGTCAGCTTTTCTATATC +
Preference number: 4 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTTSEHT*SQLFYI
Trigger: GATATAGAAAAGCTGACTCCAGGTATGTTCCGAGGT...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAAAAGGACACCAGCCACTaGCAGGTAGAGAAAGTAGTT +
Preference number: 4 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQKDTSH*QVEKVV
Trigger: AACTACTTTCTCTACCTGCCAGTGGCTGGTGTCCTT...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATAAGGACACCAGCCACTaGCAGGTAGAGAAAGTAGTT +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNKDTSH*QVEKVV
Trigger: AACTACTTTCTCTACCTGCCAGTGGCTGGTGTCCTT...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCGGAGTTCCTTTAATTTaGGCACTGTGCCATAGAGAC +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVGVPLI*ALCHRD
Trigger: GTCTCTATGGCACAGTGCCCAAATTAAAGGAACTCC...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTAGCATTCTTCCTCTGTaGAGCATTTCAGCTATGCTT +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSSILPL*SISAML
Trigger: AAGCATAGCTGAAATGCTTCACAGAGGAAGAATGCT...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAAGGGGCAATAGGAGGTTaGTTTGGACCAGGATATAAA +
Preference number: 4 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQGAIGG*FGPGYK
Trigger: TTTATATCCTGGTCCAAATCAACCTCCTATTGCCCC...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCTCTTTCTTTGCAGTTaGCAGTCAAGCCAAGGTCAT +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNLFLCS*QSSQGH
Trigger: ATGACCTTGGCTTGACTGTCAACTGCAAAGAAAGAG...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTCGATTGTTCCCTAGGTaGAAGAGATCCAAAGAAGAA +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSRLFPR*KRSKEE
Trigger: TTCTTCTTTGGATCTCTTGCACCTAGGGAACAATCG...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTTCGTTGAGATCTATCTaGACAATGGCATTCAGGTGT +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSSLRSI*TMAFRC
Trigger: ACACCTGAATGCCATTGTGCAGATAGATCTCAACGA...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACGGACTAAGTCGCAAGTaGAGTCCCAAGGATTCTCGT +
Preference number: 4 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHGLSRK*SPKDSR
Trigger: ACGAGAATCCTTGGGACTGCACTTGCGACTTAGTCC...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCTTAATTTGGGCACTGTaGCATAGAGACAGTCCACAA +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVLIWAL*HRDSPQ
Trigger: TTGTGGACTGTCTCTATGGCACAGTGCCCAAATTAA...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAAGTGTTCTGGGCTGTTTaGTGGGTTTTGGTTGCTTAT +
Preference number: 4 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQVFWAV*WVLVAY
Trigger: ATAAGCAACCAAAACCCACCAAACAGCCCAGAACAC...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTGATCTATCTGCACAATaGCATTCAGGTGTTCAAGGA +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSDLSAQ*HSGVQG
Trigger: TCCTTGAACACCTGAATGCCATTGTGCAGATAGATC...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATGGAGTTCCTTTAATTTaGGCACTGTGCCATAGAGAC +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNGVPLI*ALCHRD
Trigger: GTCTCTATGGCACAGTGCCCAAATTAAAGGAACTCC...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCTCATCTATTTCTTCTaGGTCCTCTATCAGGGGAAT +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNLIYFF*VLYQGN
Trigger: ATTCCCCTGATAGAGGACTCAGAAGAAATAGATGAG...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACACTCATCGAATTCCTCTaGAGATACAGTTTAAAAGGT +
Preference number: 4 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTLIEFL*RYSLKG
Trigger: ACCTTTTAAACTGTATCTTCAGAGGAATTCGATGAG...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCTTAAATGCTCCAGTTTaGATGTCCTGCAATGCATTG +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVLNAPV*MSCNAL
Trigger: CAATGCATTGCAGGACATTCAAACTGGAGCATTTAA...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCGGAAGGTGTCATTTCTaGAGACATCTAGTTTGTTCT +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVGRCHF*RHLVCS
Trigger: AGAACAAACTAGATGTCTTCAGAAATGACACCTTCC...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACCGATTGTTCCCTAGGTaGAAGAGATCCAAAGAAGAA +
Preference number: 4 (lower is better)
Translates to: CEGTSLINDLSMALPQNHRLFPR*KRSKEE
Trigger: TTCTTCTTTGGATCTCTTGCACCTAGGGAACAATCG...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCCTGTTTGGTGGGTTTTaGTTGCTTATTAGAGGACTT +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVLFGGF*LLIRGL
Trigger: AAGTCCTCTAATAAGCAACCAAAACCCACCAAACAG...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACGGCATTCAAGGGCCTTaGAAGGAGTTCAGAGATGTT +
Preference number: 4 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHGIQGP*KEFRDV
Trigger: AACATCTCTGAACTCCTTCCAAGGCCCTTGAATGCC...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACACCTCGGAACATACCTaGAGTCAGCTTTTCTATATC +
Preference number: 4 (lower is better)
Translates to: CEGTSLINDLSMALPQNHTSEHT*SQLFYI
Trigger: GATATAGAAAAGCTGACTCCAGGTATGTTCCGAGGT...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTGAAGGCTGCAGGTTaGATTTCCCGGATGACGTTG +
Preference number: 4 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYLKAAG*ISRMTL
Trigger: CAACGTCATCCGGGAAATCCAACCTGCAGCCTTCAG...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATGATCTATCTGCACAATaGCATTCAGGTGTTCAAGGA +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNDLSAQ*HSGVQG
Trigger: TCCTTGAACACCTGAATGCCATTGTGCAGATAGATC...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
3UTR CAA 72 bp TTCCTCAAAATCACATCTGAGAGGGGGAGCACACTTTaGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTC +
Preference number: 4 (lower is better)
Translates to: FLKITSERGSTL*YSLVIMRFSSV
Trigger: GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTCAGATGTGATTTTGAGGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCCAGAACTCAGTAATCTaGCTAATGTTTGTAAATCCC +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVQNSVI*LMFVNP
Trigger: GGGATTTACAAACATTAGTCAGATTACTGAGTTCTG...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAATTAAATGCTCCAGTTTaGATGTCCTGCAATGCATTG +
Preference number: 4 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQLNAPV*MSCNAL
Trigger: CAATGCATTGCAGGACATTCAAACTGGAGCATTTAA...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCTCAGCAAGTTATTGTTaGGAAATAGCAGCTTCAAGT +
Preference number: 4 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVSASYC*EIAASS
Trigger: ACTTGAAGCTGCTATTTCTCAACAATAACTTGCTGA...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACAGAGAAGGGTTTCTTTaGGCCTGGCATCCTGCTGTA +
Preference number: 4 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYREGFL*AWHPAV
Trigger: TACAGCAGGATGCCAGGCTCAAAGAAACCCTTCTCT...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACGGATTCTCTTCTAGCTaGAGCTCCATCAGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYGFSSS*SSIRLL
Trigger: CAGAAGCCTGATGGAGCTCCAGCTAGAAGAGAATCC...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCGATGAAGCAGTAAAATaGACAGAAGACAACATAGAG +
Preference number: 4 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVDEAVK*TEDNIE
Trigger: CTCTATGTTGTCTTCTGTCCATTTTACTGCTTCATC...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATTTGGAAGCACGGGGATaGGATTATCATTTAAGATTA +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNLEARG*DYHLRL
Trigger: TAATCTTAAATGATAATCTCATCCCCGTGCTTCCAA...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACTCAGCAAGTTATTGTTaGGAAATAGCAGCTTCAAGT +
Preference number: 4 (lower is better)
Translates to: CEGTSLINDLSMALPQNHSASYC*EIAASS
Trigger: ACTTGAAGCTGCTATTTCTCAACAATAACTTGCTGA...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTATCCTAGAGCAATTGTaGTTAGAAGAATTATCCACA +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSILEQL*LEELST
Trigger: TGTGGATAATTCTTCTAAGCACAATTGCTCTAGGAT...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATTTGAATGTCCTGCAATaGATTGTTCCCAAGGTTAAT +
Preference number: 4 (lower is better)
Translates to: VCEGTSLINDLSMALPQNLNVLQ*IVPKVN
Trigger: ATTAACCTTGGGAACAATGCATTGCAGGACATTCAA...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTTTGGTGGGTTTTGGTTaGTTATTAGAGGACTTATAT +
Preference number: 4 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSLVGFG*LLEDLY
Trigger: ATATAAGTCCTCTAATAAGCAACCAAAACCCACCAA...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACTTGAGCCTGGCATCCTaGTGTAAGTCTGGATATTGC +
Preference number: 4 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYLSLAS*CKSGYC
Trigger: GCAATATCCAGACTTACAGCAGGATGCCAGGCTCAA...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACGATGAAGCAGTAAAATaGACAGAAGACAACATAGAG +
Preference number: 4 (lower is better)
Translates to: CEGTSLINDLSMALPQNHDEAVK*TEDNIE
Trigger: CTCTATGTTGTCTTCTGTCCATTTTACTGCTTCATC...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACGGAAGGTGTCATTTCTaGAGACATCTAGTTTGTTCT +
Preference number: 4 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHGRCHF*RHLVCS
Trigger: AGAACAAACTAGATGTCTTCAGAAATGACACCTTCC...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACGGGGCAATAGGAGGTTaGTTTGGACCAGGATATAAA +
Preference number: 4 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYGAIGG*FGPGYK
Trigger: TTTATATCCTGGTCCAAATCAACCTCCTATTGCCCC...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACATGGTTTCGATCCACTaGTTAAAGGGGACTAAGTCG +
Preference number: 4 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYMVSIH*LKGTKS
Trigger: CGACTTAGTCCCCTTTAAGCAGTGGATCGAAACCAT...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACCTGTTTGGTGGGTTTTaGTTGCTTATTAGAGGACTT +
Preference number: 4 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHLFGGF*LLIRGL
Trigger: AAGTCCTCTAATAAGCAACCAAAACCCACCAAACAG...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACGTGTTCTGGGCTGTTTaGTGGGTTTTGGTTGCTTAT +
Preference number: 4 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYVFWAV*WVLVAY
Trigger: ATAAGCAACCAAAACCCACCAAACAGCCCAGAACAC...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACCAGAACTCAGTAATCTaGCTAATGTTTGTAAATCCC +
Preference number: 4 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHQNSVI*LMFVNP
Trigger: GGGATTTACAAACATTAGTCAGATTACTGAGTTCTG...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACTTGGAAGCACGGGGATaGGATTATCATTTAAGATTA +
Preference number: 4 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHLEARG*DYHLRL
Trigger: TAATCTTAAATGATAATCTCATCCCCGTGCTTCCAA...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACTCAAGCCAAGGTCATTaGTATGCAAATTGCATGTAC +
Preference number: 4 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYSSQGH*YANCMY
Trigger: GTACATGCAATTTGCATATCAATGACCTTGGCTTGA...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTTAAGGCCATTAAATaGTCCAGTTTGAATGTCCTG +
Preference number: 4 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYLKAIK*SSLNVL
Trigger: CAGGACATTCAAACTGGAGCATTTAATGGCCTTAAG...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR TCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTGTCACAATGTATGTaGAAGAGGCTTTCTTTAACT +
Preference number: 4 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYLSQCM*KRLSLT
Trigger: AGTTAAAGAAAGCCTCTTTCACATACATTGTGACAG...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR GCA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACTTGGTGGGTTTTGGTTaGTTATTAGAGGACTTATAT +
Preference number: 4 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYLVGFG*LLEDLY
Trigger: ATATAAGTCCTCTAATAAGCAACCAAAACCCACCAA...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 90 bp GTGGGGTATATACTCGTACACGTGACCCACGGGAGGGGCTTTCTCTaGCGAGGACAGAGTTGGTCGCCCTCCACCTCCACTCCCACCACT +
Preference number: 5 (lower is better)
Translates to: VGYILVHVTHGRGFL*RGQSWSPSTSTPTT
Trigger: AGTGGTGGGAGTGGAGGTGGAGGGCGACCAACTCTGTCCTCGCCAGAGAAAGCCCCTCCCGTGGGTCACGTGTACGAGTATATACCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 90 bp GCGAGGACAGAGTTGGTCGCCCTCCACCTCCACTCCCACCACTGTTaGCTCCACTGTCCTCAAACAGCCGGTGACATTGCATCTGGATTC +
Preference number: 5 (lower is better)
Translates to: ARTELVALHLHSHHC*LHCPQTAGDIASGF
Trigger: GAATCCAGATGCAATGTCACCGGCTGTTTGAGGACAGTGGAGGCAACAGTGGTGGGAGTGGAGGTGGAGGGCGACCAACTCTGTCCTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS TCA 90 bp GGACACCAGCCACTGGCAGGTAGAGAAAGTAGTTCTTCCTCAAGTTaGGCCGAGCCAGGGATGTACCTGCAAAGGCATCAGTTGGCAGAG +
Preference number: 5 (lower is better)
Translates to: GHQPLAGRESSSSSS*AEPGMYLQRHQLAE
Trigger: CTCTGCCAACTGATGCCTTTGCAGGTACATCCCTGGCTCGGCTCAACTTGAGGAAGAACTACTTTCTCTACCTGCCAGTGGCTGGTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 90 bp TTAATTTGGGCACTGTGCCATAGAGACAGTCCACAAATCCCACTGTaGACGGAGCAGGCTGTGGCCTCTCACGGTCTAGTAGCAGACTGC +
Preference number: 5 (lower is better)
Translates to: LIWALCHRDSPQIPL*TEQAVASHGLVADC
Trigger: GCAGTCTGCTACTAGACCGTGAGAGGCCACAGCCTGCTCCGTGCACAGTGGGATTTGTGGACTGTCTCTATGGCACAGTGCCCAAATTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAGCTGAAGGCTGCAGGTaGGATTTCCCGGATGACGTT +
Preference number: 5 (lower is better)
Translates to: AVSCTLGVKGTWSYVEEEAEGCR*DFPDDV
Trigger: AACGTCATCCGGGAAATCCAACCTGCAGCCTTCAGC...TTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS CCA 90 bp ATCTCTGGGCATAAAACTTCCAGCTCAATAGTGCGCACATCACGGTaGGTGAGGTTCTCGGGGGTCCTACAGAGTACATCACCTACCACG +
Preference number: 5 (lower is better)
Translates to: ISGHKTSSSIVRTSR*VRFSGVLQSTSPTT
Trigger: CGTGGTAGGTGATGTACTCTGTAGGACCCCCGAGAACCTCACCCACCGTGATGTGCGCACTATTGAGCTGGAAGTTTTATGCCCAGAGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 90 bp GGGCTGCTGAGGCAGCCACTTCTTCCTCCTCTCGAGGCTTATAGATaGGGTTGTTACACATCTGAGTTACTGGGTGGGGTATATACTCGT +
Preference number: 5 (lower is better)
Translates to: GLLRQPLLPPLEAYR*GCYTSELLGGVYTR
Trigger: ACGAGTATATACCCCACCCAGTAACTCAGATGTGTAACAACCCCATCTATAAGCCTCGAGAGGAGGAAGAAGTGGCTGCCTCAGCAGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GAGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAATCACTTTTGGGGGTTaGGTGGTCTGTGAAGCCCTT +
Preference number: 5 (lower is better)
Translates to: ERCRELYTRSEGHVELCRITFGG*VVCEAL
Trigger: AAGGGCTTCACAGACCACCAAACCCCCAAAAGTGAT...TCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS GCA 90 bp ACTAAGTCGCAAGTGCAGTCCCAAGGATTCTCGTTGAGATCTATCTaGACAATGGCATTCAGGTGTTCAAGGACACCAGCCACTGGCAGG +
Preference number: 5 (lower is better)
Translates to: TKSQVQSQGFSLRSI*TMAFRCSRTPATGR
Trigger: CCTGCCAGTGGCTGGTGTCCTTGAACACCTGAATGCCATTGTGCAGATAGATCTCAACGAGAATCCTTGGGACTGCACTTGCGACTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 90 bp AGTACATCACCTACCACGCTGACTGAGCTGATGGTTTCGATCCACTaGTTAAAGGGGACTAAGTCGCAAGTGCAGTCCCAAGGATTCTCG +
Preference number: 5 (lower is better)
Translates to: STSPTTLTELMVSIH*LKGTKSQVQSQGFS
Trigger: CGAGAATCCTTGGGACTGCACTTGCGACTTAGTCCCCTTTAAGCAGTGGATCGAAACCATCAGCTCAGTCAGCGTGGTAGGTGATGTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGAGGCATTCTCCTTGCTaGAAGATAAGTGGGGAATCC +
Preference number: 5 (lower is better)
Translates to: RDAVSCTLGVKGTWSYVERHSPC*KISGES
Trigger: GGATTCCCCACTTATCTTCAAGCAAGGAGAATGCCT...CTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGAAGGTCCACACCTTCTaGTCTCTTGCTTCTAAAGGG +
Preference number: 5 (lower is better)
Translates to: RDAVSCTLGVKGTWSYVEKVHTF*SLASKG
Trigger: CCCTTTAGAAGCAAGAGACAAGAAGGTGTGGACCTT...CTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS CCA 90 bp ATCTATCTGCACAATGGCATTCAGGTGTTCAAGGACACCAGCCACTaGCAGGTAGAGAAAGTAGTTCTTCCTCAAGTTGAGCCGAGCCAG +
Preference number: 5 (lower is better)
Translates to: IYLHNGIQVFKDTSH*QVEKVVLPQVEPSQ
Trigger: CTGGCTCGGCTCAACTTGAGGAAGAACTACTTTCTCTACCTGCCAGTGGCTGGTGTCCTTGAACACCTGAATGCCATTGTGCAGATAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 90 bp CCTTCTCTTTTTCCAGCAAGGTCCTGTAGTTACTGTGGTTCTCCTTaGGTGTTTCTGCAAACTGCTCACTTCCCAAGAGCACCTCAGCCA +
Preference number: 5 (lower is better)
Translates to: PSLFPARSCSYCGSP*VFLQTAHFPRAPQP
Trigger: TGGCTGAGGTGCTCTTGGGAAGTGAGCAGTTTGCAGAAACACCCAAGGAGAACCACAGTAACTACAGGACCTTGCTGGAAAAAGAGAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS TCA 90 bp CCTCCACCTCAGAGTCAGACAACAGTGGACAGAGTTCAGTCTTCTTaGTTTCACGGAGATCCTTCCCATGGAAATGGAAAGGTGTCTCAC +
Preference number: 5 (lower is better)
Translates to: PPPQSQTTVDRVQSS*FHGDPSHGNGKVSH
Trigger: GTGAGACACCTTTCCATTTCCATGGGAAGGATCTCCGTGAAATCAAGAAGACTGAACTCTGTCCACTGTTGTCTGACTCTGAGGTGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 90 bp TACAGTTCCAAGGATTCTCTTCTAGCTGGAGCTCCATCAGGCTTCTaGCAATGTGATCCAGCATCCCACGGTAGAAGAGAACCTTTAACC +
Preference number: 5 (lower is better)
Translates to: YSSKDSLLAGAPSGF*QCDPASHGRREPLT
Trigger: GGTTAAAGGTTCTCTTCTACCGTGGGATGCTGGATCACATTGGCAGAAGCCTGATGGAGCTCCAGCTAGAAGAGAATCCTTGGAACTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 90 bp GAGAAAGTAGTTCTTCCTCAAGTTGAGCCGAGCCAGGGATGTACCTaGAAAGGCATCAGTTGGCAGAGTCCTCAGCAAGTTATTGTTGAG +
Preference number: 5 (lower is better)
Translates to: EKVVLPQVEPSQGCT*KGISWQSPQQVIVE
Trigger: CTCAACAATAACTTGCTGAGGACTCTGCCAACTGATGCCTTTGCAGGTACATCCCTGGCTCGGCTCAACTTGAGGAAGAACTACTTTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 90 bp AGTGGACAGAGTTCAGTCTTCTTGATTTCACGGAGATCCTTCCCATaGAAATGGAAAGGTGTCTCACAGGTAATGTCTCCCACCAGGGCT +
Preference number: 5 (lower is better)
Translates to: SGQSSVFLISRRSFP*KWKGVSQVMSPTRA
Trigger: AGCCCTGGTGGGAGACATTACCTGTGAGACACCTTTCCATTTCCATGGGAAGGATCTCCGTGAAATCAAGAAGACTGAACTCTGTCCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGACAGCTTTAAATAAATaGGTTGGAAGCACGGGGATG +
Preference number: 5 (lower is better)
Translates to: RDAVSCTLGVKGTWSYVETALNK*VGSTGM
Trigger: CATCCCCGTGCTTCCAACCAATTTATTTAAAGCTGT...CTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACATGGAGATGGTCCAGGTaGGGCAATATGCAGCATCTC +
Preference number: 5 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTWRWSR*GNMQHL
Trigger: GAGATGCTGCATATTGCCCAACCTGGACCATCTCCA...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACCCACTCCCACCACTGTaGCCTCCACTGTCCTCAAAC +
Preference number: 5 (lower is better)
Translates to: CEGTSLINDLSMALPQNHPLPPL*PPLSSN
Trigger: GTTTGAGGACAGTGGAGGCAACAGTGGTGGGAGTGG...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GAGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGATCCATCCTAGAGCAATaGTGCTTAGAAGAATTATCC +
Preference number: 5 (lower is better)
Translates to: ERCRELYTRSEGHVELCRSILEQ*CLEELS
Trigger: GGATAATTCTTCTAAGCACAATTGCTCTAGGATGGA...TCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTGGCCAGGCATTCTCCTaGCTTGAAGATAAGTGGGGA +
Preference number: 5 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSGQAFS*LEDKWG
Trigger: TCCCCACTTATCTTCAAGCAAGGAGAATGCCTGGCC...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAGGTGTTCTGGGCTGTTaGGTGGGTTTTGGTTGCTTA +
Preference number: 5 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTGVLGC*VGFGCL
Trigger: TAAGCAACCAAAACCCACCAAACAGCCCAGAACACC...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAATAGATTGGCATTCAAGGGCCTaGGAAGGAGTTCAGAGATGT +
Preference number: 5 (lower is better)
Translates to: SCTLGVKGTWSYVEEEIDWHSRA*EGVQRC
Trigger: ACATCTCTGAACTCCTTCCAAGGCCCTTGAATGCCA...ATCTATTTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCCTCAGGTACAGCTTCTaGGCATTCAAGGGCCTTGGA +
Preference number: 5 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVLRYSF*AFKGLG
Trigger: TCCAAGGCCCTTGAATGCCAAGAAGCTGTACCTGAG...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAAGCTGAAGGCTGCAGGTaGGATTTCCCGGATGACGTT +
Preference number: 5 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQAEGCR*DFPDDV
Trigger: AACGTCATCCGGGAAATCCAACCTGCAGCCTTCAGC...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTCTGCAAAGGCATCAGTaGGCAGAGTCCTCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSLQRHQ*AESSAS
Trigger: ACTTGCTGAGGACTCTGCCAACTGATGCCTTTGCAG...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 90 bp ATGCAAATTGCATGTACACCCAGTAGGACATATAATGGGAATGGGTaGTCTAGTCTGATAGGGGGCAATAGGAGGTTGATTTGGACCAGG +
Preference number: 5 (lower is better)
Translates to: MQIACTPSRTYNGNG*SSLIGGNRRLIWTR
Trigger: CCTGGTCCAAATCAACCTCCTATTGCCCCCTATCAGACTAGACCACCCATTCCCATTATATGTCCTACTGGGTGTACATGCAATTTGCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACGGCCAGGCATTCTCCTaGCTTGAAGATAAGTGGGGA +
Preference number: 5 (lower is better)
Translates to: CEGTSLINDLSMALPQNHGQAFS*LEDKWG
Trigger: TCCCCACTTATCTTCAAGCAAGGAGAATGCCTGGCC...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCGGTGTTCTGGGCTGTTaGGTGGGTTTTGGTTGCTTA +
Preference number: 5 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVGVLGC*VGFGCL
Trigger: TAAGCAACCAAAACCCACCAAACAGCCCAGAACACC...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GAGAGATGCCGTGAGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAAGGAGTTCAGAGATGTaGTTAAATCCTCTTTCTTTG +
Preference number: 5 (lower is better)
Translates to: ERCRELYTRSEGHVELCRRSSEM*LNPLSL
Trigger: CAAAGAAAGAGGATTTAACAACATCTCTGAACTCCT...TCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCTCACGGCATCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCTCAGGTACAGCTTCTaGGCATTCAAGGGCCTTGGA +
Preference number: 5 (lower is better)
Translates to: VCEGTSLINDLSMALPQNLRYSF*AFKGLG
Trigger: TCCAAGGCCCTTGAATGCCAAGAAGCTGTACCTGAG...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAATAGATAAACAGCCGGTGACATaGCATCTGGATTCCTGTAAG +
Preference number: 5 (lower is better)
Translates to: SCTLGVKGTWSYVEEEIDKQPVT*HLDSCK
Trigger: CTTACAGGAATCCAGATGCAATGTCACCGGCTGTTT...ATCTATTTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAAGAGAAGGGTTTCTTaGAGCCTGGCATCCTGCTGT +
Preference number: 5 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVKRRVS*SLASCC
Trigger: ACAGCAGGATGCCAGGCTCAAAGAAACCCTTCTCTT...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAATAGATATGTCCTGCAATGCATaGTTCCCAAGGTTAATGGAC +
Preference number: 5 (lower is better)
Translates to: SCTLGVKGTWSYVEEEIDMSCNA*FPRLMD
Trigger: GTCCATTAACCTTGGGAACAATGCATTGCAGGACAT...ATCTATTTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACACAGAGTTCAGTCTTCTaGATTTCACGGAGATCCTTC +
Preference number: 5 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTQSSVF*ISRRSF
Trigger: GAAGGATCTCCGTGAAATCAAGAAGACTGAACTCTG...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCAGGCATTCTCCTTGCTaGAAGATAAGTGGGGAATCC +
Preference number: 5 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVRHSPC*KISGES
Trigger: GGATTCCCCACTTATCTTCAAGCAAGGAGAATGCCT...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAATGGCATTCAAGGGCCTaGGAAGGAGTTCAGAGATGT +
Preference number: 5 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQWHSRA*EGVQRC
Trigger: ACATCTCTGAACTCCTTCCAAGGCCCTTGAATGCCA...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAAAATAGCAGCTTCAAGTaGGGCATGAGGCTGAAGGCT +
Preference number: 5 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQNSSFK*GMRLKA
Trigger: AGCCTTCAGCCTCATGCCCAACTTGAAGCTGCTATT...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTAAACAGCCGGTGACATaGCATCTGGATTCCTGTAAG +
Preference number: 5 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSKQPVT*HLDSCK
Trigger: CTTACAGGAATCCAGATGCAATGTCACCGGCTGTTT...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCTTACTGTGGTTCTCCTaGGGTGTTTCTGCAAACTGC +
Preference number: 5 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVLLWFS*GVSANC
Trigger: GCAGTTTGCAGAAACACCCAAGGAGAACCACAGTAA...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACAAGAGAAGGGTTTCTTaGAGCCTGGCATCCTGCTGT +
Preference number: 5 (lower is better)
Translates to: CEGTSLINDLSMALPQNHKRRVS*SLASCC
Trigger: ACAGCAGGATGCCAGGCTCAAAGAAACCCTTCTCTT...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAAATCACTTTTGGGGGTTaGGTGGTCTGTGAAGCCCTT +
Preference number: 5 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQITFGG*VVCEAL
Trigger: AAGGGCTTCACAGACCACCAAACCCCCAAAAGTGAT...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 90 bp GTCGAAGGTGGTCTCGGTGTTCTGGGCTGTTTGGTGGGTTTTGGTTaGTTATTAGAGGACTTATATTCAACAGATGAAGCAGTAAAATGG +
Preference number: 5 (lower is better)
Translates to: VEGGLGVLGCLVGFG*LLEDLYSTDEAVKW
Trigger: CCATTTTACTGCTTCATCTGTTGAATATAAGTCCTCTAATAAGCAACCAAAACCCACCAAACAGCCCAGAACACCGAGACCACCTTCGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp CGTTTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAACAGCTTTAAATAAATaGGTTGGAAGCACGGGGATG +
Preference number: 5 (lower is better)
Translates to: RFSSVLGRGNCKDVVIGTTALNK*VGSTGM
Trigger: CATCCCCGTGCTTCCAACCAATTTATTTAAAGCTGT...TGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAAACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCCAGAGTTCAGTCTTCTaGATTTCACGGAGATCCTTC +
Preference number: 5 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVQSSVF*ISRRSF
Trigger: GAAGGATCTCCGTGAAATCAAGAAGACTGAACTCTG...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAATAGATGTCCTCAGCAAGTTATaGTTGAGAAATAGCAGCTTC +
Preference number: 5 (lower is better)
Translates to: SCTLGVKGTWSYVEEEIDVLSKL*LRNSSF
Trigger: GAAGCTGCTATTTCTCAACAATAACTTGCTGAGGAC...ATCTATTTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACTGGAGATGGTCCAGGTaGGGCAATATGCAGCATCTC +
Preference number: 5 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHWRWSR*GNMQHL
Trigger: GAGATGCTGCATATTGCCCAACCTGGACCATCTCCA...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTACACCTTCTTGTCTCTaGCTTCTAAAGGGCAACTTC +
Preference number: 5 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSTPSCL*LLKGNF
Trigger: GAAGTTGCCCTTTAGAAGCAAGAGACAAGAAGGTGT...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCCACTCCCACCACTGTaGCCTCCACTGTCCTCAAAC +
Preference number: 5 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYPLPPL*PPLSSN
Trigger: GTTTGAGGACAGTGGAGGCAACAGTGGTGGGAGTGG...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAAATGTCCTGCAATGCATaGTTCCCAAGGTTAATGGAC +
Preference number: 5 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQMSCNA*FPRLMD
Trigger: GTCCATTAACCTTGGGAACAATGCATTGCAGGACAT...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AGCTGTACACTAGGAGTGAAGGGCACGTGGAGCTATGTAGAGGAAGAAATAGATCTCAGCAAGTTATTGTaGAGAAATAGCAGCTTCAAG +
Preference number: 5 (lower is better)
Translates to: SCTLGVKGTWSYVEEEIDLSKLL*RNSSFK
Trigger: CTTGAAGCTGCTATTTCTCAACAATAACTTGCTGAG...ATCTATTTCTTCCTCTACATAGCTCCACGTGCCCTTCACTCCTAGTGTACAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAATCCCAAGGATTCTCGTaGAGATCTATCTGCACAATG +
Preference number: 5 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQSQGFS*RSICTM
Trigger: CATTGTGCAGATAGATCTCAACGAGAATCCTTGGGA...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 90 bp TTCGAAGTACAAGTAATGCAAGCTCTGCAGACCTCGGAACATACCTaGAGTCAGCTTTTCTATATCATTGCCATTGAGAAAGAGACTCTT +
Preference number: 5 (lower is better)
Translates to: FEVQVMQALQTSEHT*SQLFYIIAIEKETL
Trigger: AAGAGTCTCTTTCTCAATGGCAATGATATAGAAAAGCTGACTCCAGGTATGTTCCGAGGTCTGCAGAGCTTGCATTACTTGTACTTCGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GAGAGGGGGAGCACACTTTTGTATTCTCTAGTTATCATGCGTTTCAGTTCTGTCTCATTGATATGCAAATaGCATGTACACCCAGTAGGA +
Preference number: 5 (lower is better)
Translates to: ERGSTLLYSLVIMRFSSVSLICK*HVHPVG
Trigger: TCCTACTGGGTGTACATGCAATTTGCATATCAATGA...GACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTTCATTGATATGCAAATaGCATGTACACCCAGTAGGA +
Preference number: 5 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSSLICK*HVHPVG
Trigger: TCCTACTGGGTGTACATGCAATTTGCATATCAATGA...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTTTAAATCCTCTTTCTTaGCAGTTGACAGTCAAGCCA +
Preference number: 5 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSLNPLS*QLTVKP
Trigger: TGGCTTGACTGTCAACTGCAAAGAAAGAGGATTTAA...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCCTCAGCAAGTTATTGTaGAGAAATAGCAGCTTCAAG +
Preference number: 5 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVLSKLL*RNSSFK
Trigger: CTTGAAGCTGCTATTTCTCAACAATAACTTGCTGAG...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATGTCCTCAGCAAGTTATaGTTGAGAAATAGCAGCTTC +
Preference number: 5 (lower is better)
Translates to: VCEGTSLINDLSMALPQNVLSKL*LRNSSF
Trigger: GAAGCTGCTATTTCTCAACAATAACTTGCTGAGGAC...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTGCAAAGGCATCAGTaGGCAGAGTCCTCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYLQRHQ*AESSAS
Trigger: ACTTGCTGAGGACTCTGCCAACTGATGCCTTTGCAG...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACTTACTGTGGTTCTCCTaGGGTGTTTCTGCAAACTGC +
Preference number: 5 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHLLWFS*GVSANC
Trigger: GCAGTTTGCAGAAACACCCAAGGAGAACCACAGTAA...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAATCCATCCTAGAGCAATaGTGCTTAGAAGAATTATCC +
Preference number: 5 (lower is better)
Translates to: SFRINTTIPSIPHTWHSQSILEQ*CLEELS
Trigger: GGATAATTCTTCTAAGCACAATTGCTCTAGGATGGA...TTGACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TTCAGTTCTGTCCTAGGCAGGGGAAACTGTAAGGATGTAGTTATTGGGACAAGTATTAAATGCTCCAGTTaGAATGTCCTGCAATGCATT +
Preference number: 5 (lower is better)
Translates to: FSSVLGRGNCKDVVIGTSIKCSS*NVLQCI
Trigger: AATGCATTGCAGGACATTCAAACTGGAGCATTTAAT...ACTTGTCCCAATAACTACATCCTTACAGTTTCCCCTGCCTAGGACAGAACTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATTTAAATCCTCTTTCTTaGCAGTTGACAGTCAAGCCA +
Preference number: 5 (lower is better)
Translates to: VCEGTSLINDLSMALPQNLNPLS*QLTVKP
Trigger: TGGCTTGACTGTCAACTGCAAAGAAAGAGGATTTAA...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACTCTATATCATTGCCATaGAGAAAGAGACTCTTCAGG +
Preference number: 5 (lower is better)
Translates to: CEGTSLINDLSMALPQNHSISLP*RKRLFR
Trigger: CCTGAAGAGTCTCTTTCTCAATGGCAATGATATAGA...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp ACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACATGGCACAGTCAGCTTTTCTATATCATaGCCATTGAGAAAGAGACTC +
Preference number: 5 (lower is better)
Translates to: THLGSIQRSPVYLTHGTVSFSIS*PLRKRL
Trigger: GAGTCTCTTTCTCAATGGCAATGATATAGAAAAGCT...GACTGTGCCATGTGTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACTCCCAAGGATTCTCGTaGAGATCTATCTGCACAATG +
Preference number: 5 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHSQGFS*RSICTM
Trigger: CATTGTGCAGATAGATCTCAACGAGAATCCTTGGGA...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACACACCTTCTTGTCTCTaGCTTCTAAAGGGCAACTTC +
Preference number: 5 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHTPSCL*LLKGNF
Trigger: GAAGTTGCCCTTTAGAAGCAAGAGACAAGAAGGTGT...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS TCA 90 bp AGATACAGTCTCTTTAAAATCTTAAGGCCATTAAATGCTCCAGTTTaGATGTCCTGCAATGCATTGTTCCCAAGGTTAATGGACACCGCA +
Preference number: 5 (lower is better)
Translates to: RYSLFKILRPLNAPV*MSCNALFPRLMDTA
Trigger: TGCGGTGTCCATTAACCTTGGGAACAATGCATTGCAGGACATTCAAACTGGAGCATTTAATGGCCTTAAGATTTTAAAGAGACTGTATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp GTCTGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATTTTGGTGGGTTTTGGTaGCTTATTAGAGGACTTATA +
Preference number: 5 (lower is better)
Translates to: VCEGTSLINDLSMALPQNFGGFW*LIRGLI
Trigger: TATAAGTCCTCTAATAAGCAACCAAAACCCACCAAA...ATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp TGCGAAGGCACTTCATTGATTAATGATCTGAGTATGGCCCTTCCTCAAAATCACAGGAGTTCAGAGATGTaGTTAAATCCTCTTTCTTTG +
Preference number: 5 (lower is better)
Translates to: CEGTSLINDLSMALPQNHRSSEM*LNPLSL
Trigger: CAAAGAAAGAGGATTTAACAACATCTCTGAACTCCT...GTGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACAAGGTCCACACCTTCTaGTCTCTTGCTTCTAAAGGG +
Preference number: 5 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYKVHTF*SLASKG
Trigger: CCCTTTAGAAGCAAGAGACAAGAAGGTGTGGACCTT...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACAGTGAAGAAAACTGTTaGTGTATAGTCTTCTCATCG +
Preference number: 5 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHSEENC*CIVFSS
Trigger: CGATGAGAAGACTATACACAAACAGTTTTCTTCACT...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp CACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTCACAGCTTTTCTATATCATaGCCATTGAGAAAGAGACTC +
Preference number: 5 (lower is better)
Translates to: HIEVYSFRINTTIPSIPHSFSIS*PLRKRL
Trigger: GAGTCTCTTTCTCAATGGCAATGATATAGAAAAGCT...GTGAGGTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACCTGAAGACATCTAGTTaGTTCTCATGGAGATACAGT +
Preference number: 5 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYLKTSS*FSWRYS
Trigger: ACTGTATCTCCATGAGAACAAACTAGATGTCTTCAG...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS-3UTR CAA 90 bp AAAGACACATTGAAGTTTACTCATTTAGGATCAATACAACGATCCCCAGTATACTCTATATCATTGCCATaGAGAAAGAGACTCTTCAGG +
Preference number: 5 (lower is better)
Translates to: KDTLKFTHLGSIQRSPVYSISLP*RKRLFR
Trigger: CCTGAAGAGTCTCTTTCTCAATGGCAATGATATAGA...GTATACTGGGGATCGTTGTATTGATCCTAAATGAGTAAACTTCAATGTGTCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 72 bp GAGCAGGCTGTGGCCTCTCACGGTCTAGTAGCAGACTaGCACCACCACAACCTCCCCCAGGGGGAAACAGCA +
Preference number: 6 (lower is better)
Translates to: EQAVASHGLVAD*HHHNLPQGETA
Trigger: TGCTGTTTCCCCCTGGGGGAGGTTGTGGTGGTGGCAGTCTGCTACTAGACCGTGAGAGGCCACAGCCTGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 72 bp ATACTCGTACACGTGACCCACGGGAGGGGCTTTCTCTaGCGAGGACAGAGTTGGTCGCCCTCCACCTCCACT +
Preference number: 6 (lower is better)
Translates to: ILVHVTHGRGFL*RGQSWSPSTST
Trigger: AGTGGAGGTGGAGGGCGACCAACTCTGTCCTCGCCAGAGAAAGCCCCTCCCGTGGGTCACGTGTACGAGTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 72 bp CCCGTTAGGGTGGTAATCTCCAGGCTGGGGTGGAGATaGTCCAGGTTGGGCAATATGCAGCATCTCTGGGCA +
Preference number: 6 (lower is better)
Translates to: PVRVVISRLGWR*SRLGNMQHLWA
Trigger: TGCCCAGAGATGCTGCATATTGCCCAACCTGGACCATCTCCACCCCAGCCTGGAGATTACCACCCTAACGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 72 bp GCACTGTGCCATAGAGACAGTCCACAAATCCCACTGTaGACGGAGCAGGCTGTGGCCTCTCACGGTCTAGTA +
Preference number: 6 (lower is better)
Translates to: ALCHRDSPQIPL*TEQAVASHGLV
Trigger: TACTAGACCGTGAGAGGCCACAGCCTGCTCCGTGCACAGTGGGATTTGTGGACTGTCTCTATGGCACAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 72 bp CTCACTTCCCAAGAGCACCTCAGCCATTCCTGTTGGTaGTGTACCAGGACCTCCACGGTCTGTAGCTCCTGT +
Preference number: 6 (lower is better)
Translates to: LTSQEHLSHSCW*CTRTSTVCSSC
Trigger: ACAGGAGCTACAGACCGTGGAGGTCCTGGTACACAACCAACAGGAATGGCTGAGGTGCTCTTGGGAAGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS TCA 72 bp GGGGGTCCTACAGAGTACATCACCTACCACGCTGACTaGGCTGATGGTTTCGATCCACTGCTTAAAGGGGAC +
Preference number: 6 (lower is better)
Translates to: GGPTEYITYHAD*ADGFDPLLKGD
Trigger: GTCCCCTTTAAGCAGTGGATCGAAACCATCAGCTCAGTCAGCGTGGTAGGTGATGTACTCTGTAGGACCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 72 bp GAACAGAACCAAGAGGCTGAGAATCAACACAGAAAGTaGCACAGGGCCCCCTGGGGGAGAGAACTCATAAGG +
Preference number: 6 (lower is better)
Translates to: EQNQEAENQHRK*HRAPWGRELIR
Trigger: CCTTATGAGTTCTCTCCCCCAGGGGGCCCTGTGCCACTTTCTGTGTTGATTCTCAGCCTCTTGGTTCTGTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS TCA 72 bp CCACTGGCAGGTAGAGAAAGTAGTTCTTCCTCAAGTTaGGCCGAGCCAGGGATGTACCTGCAAAGGCATCAG +
Preference number: 6 (lower is better)
Translates to: PLAGRESSSSSS*AEPGMYLQRHQ
Trigger: CTGATGCCTTTGCAGGTACATCCCTGGCTCGGCTCAACTTGAGGAAGAACTACTTTCTCTACCTGCCAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS TCA 72 bp TTTGGGGGTTTGGTGGTCTGTGAAGCCCTTTCCAGCTaGGAAGAGAAGGGTTTCTTTGAGCCTGGCATCCTG +
Preference number: 6 (lower is better)
Translates to: FGGLVVCEALSS*EEKGFFEPGIL
Trigger: CAGGATGCCAGGCTCAAAGAAACCCTTCTCTTCTCAGCTGGAAAGGGCTTCACAGACCACCAAACCCCCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 72 bp GTTCTTCCTCAAGTTGAGCCGAGCCAGGGATGTACCTaGAAAGGCATCAGTTGGCAGAGTCCTCAGCAAGTT +
Preference number: 6 (lower is better)
Translates to: VLPQVEPSQGCT*KGISWQSPQQV
Trigger: AACTTGCTGAGGACTCTGCCAACTGATGCCTTTGCAGGTACATCCCTGGCTCGGCTCAACTTGAGGAAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 72 bp CCTACCACGCTGACTGAGCTGATGGTTTCGATCCACTaGTTAAAGGGGACTAAGTCGCAAGTGCAGTCCCAA +
Preference number: 6 (lower is better)
Translates to: PTTLTELMVSIH*LKGTKSQVQSQ
Trigger: TTGGGACTGCACTTGCGACTTAGTCCCCTTTAAGCAGTGGATCGAAACCATCAGCTCAGTCAGCGTGGTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 90 bp CAGCCGGTGACATTGCATCTGGATTCCTGTAAGGTCCACACCTTCTaGTCTCTTGCTTCTAAAGGGCAACTTCTTCCTACGCCGACGGAG +
Preference number: 6 (lower is better)
Translates to: QPVTLHLDSCKVHTF*SLASKGQLLPTPTE
Trigger: CTCCGTCGGCGTAGGAAGAAGTTGCCCTTTAGAAGCAAGAGACAAGAAGGTGTGGACCTTACAGGAATCCAGATGCAATGTCACCGGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 90 bp ACTCCCACCACTGTTGCCTCCACTGTCCTCAAACAGCCGGTGACATaGCATCTGGATTCCTGTAAGGTCCACACCTTCTTGTCTCTTGCT +
Preference number: 6 (lower is better)
Translates to: TPTTVASTVLKQPVT*HLDSCKVHTFLSLA
Trigger: AGCAAGAGACAAGAAGGTGTGGACCTTACAGGAATCCAGATGCAATGTCACCGGCTGTTTGAGGACAGTGGAGGCAACAGTGGTGGGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 90 bp GGCAGAGTCCTCAGCAAGTTATTGTTGAGAAATAGCAGCTTCAAGTaGGGCATGAGGCTGAAGGCTGCAGGTTGGATTTCCCGGATGACG +
Preference number: 6 (lower is better)
Translates to: GRVLSKLLLRNSSFK*GMRLKAAGWISRMT
Trigger: CGTCATCCGGGAAATCCAACCTGCAGCCTTCAGCCTCATGCCCAACTTGAAGCTGCTATTTCTCAACAATAACTTGCTGAGGACTCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 90 bp GTGAGGGTGAGGGTGGTGATGGTTCACCGTCACTATGGTGTTAAGTaGAGAGTTGGAAACAGCCAGAGCCCACTCCTTCTCTTTTTCCAG +
Preference number: 6 (lower is better)
Translates to: VRVRVVMVHRHYGVK*RVGNSQSPLLLFFQ
Trigger: CTGGAAAAAGAGAAGGAGTGGGCTCTGGCTGTTTCCAACTCTCAACTTAACACCATAGTGACGGTGAACCATCACCACCCTCACCCTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 72 bp GGTCCTGTAGTTACTGTGGTTCTCCTTGGGTGTTTCTaGAAACTGCTCACTTCCCAAGAGCACCTCAGCCAT +
Preference number: 6 (lower is better)
Translates to: GPVVTVVLLGCF*KLLTSQEHLSH
Trigger: ATGGCTGAGGTGCTCTTGGGAAGTGAGCAGTTTGCAGAAACACCCAAGGAGAACCACAGTAACTACAGGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 72 bp CATAAAACTTCCAGCTCAATAGTGCGCACATCACGGTaGGTGAGGTTCTCGGGGGTCCTACAGAGTACATCA +
Preference number: 6 (lower is better)
Translates to: HKTSSSIVRTSR*VRFSGVLQSTS
Trigger: TGATGTACTCTGTAGGACCCCCGAGAACCTCACCCACCGTGATGTGCGCACTATTGAGCTGGAAGTTTTATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 72 bp AGGCAGCCACTTCTTCCTCCTCTCGAGGCTTATAGATaGGGTTGTTACACATCTGAGTTACTGGGTGGGGTA +
Preference number: 6 (lower is better)
Translates to: RQPLLPPLEAYR*GCYTSELLGGV
Trigger: TACCCCACCCAGTAACTCAGATGTGTAACAACCCCATCTATAAGCCTCGAGAGGAGGAAGAAGTGGCTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 72 bp AGGGTGGTGATGGTTCACCGTCACTATGGTGTTAAGTaGAGAGTTGGAAACAGCCAGAGCCCACTCCTTCTC +
Preference number: 6 (lower is better)
Translates to: RVVMVHRHYGVK*RVGNSQSPLLL
Trigger: GAGAAGGAGTGGGCTCTGGCTGTTTCCAACTCTCAACTTAACACCATAGTGACGGTGAACCATCACCACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 90 bp ACAGAAGACAACATAGAGGAAGGTTTAGTTGGCCAGGCATTCTCCTaGCTTGAAGATAAGTGGGGAATCCCCAGACTGGCCTCCACCTCA +
Preference number: 6 (lower is better)
Translates to: TEDNIEEGLVGQAFS*LEDKWGIPRLASTS
Trigger: TGAGGTGGAGGCCAGTCTGGGGATTCCCCACTTATCTTCAAGCAAGGAGAATGCCTGGCCAACTAAACCTTCCTCTATGTTGTCTTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 72 bp AAGGATTCTCTTCTAGCTGGAGCTCCATCAGGCTTCTaGCAATGTGATCCAGCATCCCACGGTAGAAGAGAA +
Preference number: 6 (lower is better)
Translates to: KDSLLAGAPSGF*QCDPASHGRRE
Trigger: TTCTCTTCTACCGTGGGATGCTGGATCACATTGGCAGAAGCCTGATGGAGCTCCAGCTAGAAGAGAATCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 72 bp CAAGTGCAGTCCCAAGGATTCTCGTTGAGATCTATCTaGACAATGGCATTCAGGTGTTCAAGGACACCAGCC +
Preference number: 6 (lower is better)
Translates to: QVQSQGFSLRSI*TMAFRCSRTPA
Trigger: GGCTGGTGTCCTTGAACACCTGAATGCCATTGTGCAGATAGATCTCAACGAGAATCCTTGGGACTGCACTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 72 bp AACATAGAGGAAGGTTTAGTTGGCCAGGCATTCTCCTaGCTTGAAGATAAGTGGGGAATCCCCAGACTGGCC +
Preference number: 6 (lower is better)
Translates to: NIEEGLVGQAFS*LEDKWGIPRLA
Trigger: GGCCAGTCTGGGGATTCCCCACTTATCTTCAAGCAAGGAGAATGCCTGGCCAACTAAACCTTCCTCTATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 72 bp CAGCTTCAAGTTGGGCATGAGGCTGAAGGCTGCAGGTaGGATTTCCCGGATGACGTTGAATTCGAAGTACAA +
Preference number: 6 (lower is better)
Translates to: QLQVGHEAEGCR*DFPDDVEFEVQ
Trigger: TTGTACTTCGAATTCAACGTCATCCGGGAAATCCAACCTGCAGCCTTCAGCCTCATGCCCAACTTGAAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 72 bp GTCTTCTTGATTTCACGGAGATCCTTCCCATGGAAATaGAAAGGTGTCTCACAGGTAATGTCTCCCACCAGG +
Preference number: 6 (lower is better)
Translates to: VFLISRRSFPWK*KGVSQVMSPTR
Trigger: CCTGGTGGGAGACATTACCTGTGAGACACCTTTCCATTTCCATGGGAAGGATCTCCGTGAAATCAAGAAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 72 bp CACAATGGCATTCAGGTGTTCAAGGACACCAGCCACTaGCAGGTAGAGAAAGTAGTTCTTCCTCAAGTTGAG +
Preference number: 6 (lower is better)
Translates to: HNGIQVFKDTSH*QVEKVVLPQVE
Trigger: CTCAACTTGAGGAAGAACTACTTTCTCTACCTGCCAGTGGCTGGTGTCCTTGAACACCTGAATGCCATTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 90 bp GATGTACCTGCAAAGGCATCAGTTGGCAGAGTCCTCAGCAAGTTATaGTTGAGAAATAGCAGCTTCAAGTTGGGCATGAGGCTGAAGGCT +
Preference number: 6 (lower is better)
Translates to: DVPAKASVGRVLSKL*LRNSSFKLGMRLKA
Trigger: AGCCTTCAGCCTCATGCCCAACTTGAAGCTGCTATTTCTCAACAATAACTTGCTGAGGACTCTGCCAACTGATGCCTTTGCAGGTACATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 90 bp AGACCTCGGAACATACCTGGAGTCAGCTTTTCTATATCATTGCCATaGAGAAAGAGACTCTTCAGGTTGGGCAGGTTGATGAAAGCCCCA +
Preference number: 6 (lower is better)
Translates to: RPRNIPGVSFSISLP*RKRLFRLGRLMKAP
Trigger: TGGGGCTTTCATCAACCTGCCCAACCTGAAGAGTCTCTTTCTCAATGGCAATGATATAGAAAAGCTGACTCCAGGTATGTTCCGAGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS TCA 72 bp GGACTAAGTCGCAAGTGCAGTCCCAAGGATTCTCGTTaGGATCTATCTGCACAATGGCATTCAGGTGTTCAA +
Preference number: 6 (lower is better)
Translates to: GLSRKCSPKDSR*DLSAQWHSGVQ
Trigger: TTGAACACCTGAATGCCATTGTGCAGATAGATCTCAACGAGAATCCTTGGGACTGCACTTGCGACTTAGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CCA 72 bp GCATGTACACCCAGTAGGACATATAATGGGAATGGGTaGTCTAGTCTGATAGGGGGCAATAGGAGGTTGATT +
Preference number: 6 (lower is better)
Translates to: ACTPSRTYNGNG*SSLIGGNRRLI
Trigger: AATCAACCTCCTATTGCCCCCTATCAGACTAGACCACCCATTCCCATTATATGTCCTACTGGGTGTACATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 72 bp TGGGATGTCGAAGGTGGTCTCGGTGTTCTGGGCTGTTaGGTGGGTTTTGGTTGCTTATTAGAGGACTTATAT +
Preference number: 6 (lower is better)
Translates to: WDVEGGLGVLGC*VGFGCLLEDLY
Trigger: ATATAAGTCCTCTAATAAGCAACCAAAACCCACCAAACAGCCCAGAACACCGAGACCACCTTCGACATCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 72 bp CCTCGGAACATACCTGGAGTCAGCTTTTCTATATCATaGCCATTGAGAAAGAGACTCTTCAGGTTGGGCAGG +
Preference number: 6 (lower is better)
Translates to: PRNIPGVSFSIS*PLRKRLFRLGR
Trigger: CCTGCCCAACCTGAAGAGTCTCTTTCTCAATGGCAATGATATAGAAAAGCTGACTCCAGGTATGTTCCGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 90 bp CTCTGCAGACCTCGGAACATACCTGGAGTCAGCTTTTCTATATCATaGCCATTGAGAAAGAGACTCTTCAGGTTGGGCAGGTTGATGAAA +
Preference number: 6 (lower is better)
Translates to: LCRPRNIPGVSFSIS*PLRKRLFRLGRLMK
Trigger: TTTCATCAACCTGCCCAACCTGAAGAGTCTCTTTCTCAATGGCAATGATATAGAAAAGCTGACTCCAGGTATGTTCCGAGGTCTGCAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS TCA 72 bp CAGAGTCAGACAACAGTGGACAGAGTTCAGTCTTCTTaGTTTCACGGAGATCCTTCCCATGGAAATGGAAAG +
Preference number: 6 (lower is better)
Translates to: QSQTTVDRVQSS*FHGDPSHGNGK
Trigger: CTTTCCATTTCCATGGGAAGGATCTCCGTGAAATCAAGAAGACTGAACTCTGTCCACTGTTGTCTGACTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 90 bp TATAAAGCCTGGGATGTCGAAGGTGGTCTCGGTGTTCTGGGCTGTTaGGTGGGTTTTGGTTGCTTATTAGAGGACTTATATTCAACAGAT +
Preference number: 6 (lower is better)
Translates to: YKAWDVEGGLGVLGC*VGFGCLLEDLYSTD
Trigger: ATCTGTTGAATATAAGTCCTCTAATAAGCAACCAAAACCCACCAAACAGCCCAGAACACCGAGACCACCTTCGACATCCCAGGCTTTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 72 bp AACATACCTGGAGTCAGCTTTTCTATATCATTGCCATaGAGAAAGAGACTCTTCAGGTTGGGCAGGTTGATG +
Preference number: 6 (lower is better)
Translates to: NIPGVSFSISLP*RKRLFRLGRLM
Trigger: CATCAACCTGCCCAACCTGAAGAGTCTCTTTCTCAATGGCAATGATATAGAAAAGCTGACTCCAGGTATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 90 bp TTCCCACGAAGGTCCAGATGCGTTAAGGAAACAGCTTTAAATAAATaGGTTGGAAGCACGGGGATGAGATTATCATTTAAGATTAGAACC +
Preference number: 6 (lower is better)
Translates to: FPRRSRCVKETALNK*VGSTGMRLSFKIRT
Trigger: GGTTCTAATCTTAAATGATAATCTCATCCCCGTGCTTCCAACCAATTTATTTAAAGCTGTTTCCTTAACGCATCTGGACCTTCGTGGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS GCA 72 bp AAGAGAACCTTTAACCTGTTCCCACGAAGGTCCAGATaGGTTAAGGAAACAGCTTTAAATAAATTGGTTGGA +
Preference number: 6 (lower is better)
Translates to: KRTFNLFPRRSR*VKETALNKLVG
Trigger: TCCAACCAATTTATTTAAAGCTGTTTCCTTAACGCATCTGGACCTTCGTGGGAACAGGTTAAAGGTTCTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS TCA 72 bp GAAGAAAAATTCCAAAAATCAGAGCGGTATATCTTCTaGATAAGATTGCTGCTCAGGTACAGCTTCTTGGCA +
Preference number: 6 (lower is better)
Translates to: EEKFQKSERYIF*IRLLLRYSFLA
Trigger: TGCCAAGAAGCTGTACCTGAGCAGCAATCTTATTCAGAAGATATACCGCTCTGATTTTTGGAATTTTTCTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS TCA 72 bp CTCTTTAAAATCTTAAGGCCATTAAATGCTCCAGTTTaGATGTCCTGCAATGCATTGTTCCCAAGGTTAATG +
Preference number: 6 (lower is better)
Translates to: LFKILRPLNAPV*MSCNALFPRLM
Trigger: CATTAACCTTGGGAACAATGCATTGCAGGACATTCAAACTGGAGCATTTAATGGCCTTAAGATTTTAAAGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS TCA 72 bp AAACTGTTTGTGTATAGTCTTCTCATCGAATTCCTCTaGAGATACAGTTTAAAAGGTCTTGACCAGAACTCA +
Preference number: 6 (lower is better)
Translates to: KLFVYSLLIEFL*RYSLKGLDQNS
Trigger: TGAGTTCTGGTCAAGACCTTTTAAACTGTATCTTCAGAGGAATTCGATGAGAAGACTATACACAAACAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2
CDS CAA 72 bp AAGCCAAGGAAGGTGTCATTTCTGAAGACATCTAGTTaGTTCTCATGGAGATACAGTCTCTTTAAAATCTTA +
Preference number: 6 (lower is better)
Translates to: KPRKVSFLKTSS*FSWRYSLFKIL
Trigger: TAAGATTTTAAAGAGACTGTATCTCCATGAGAACAAACTAGATGTCTTCAGAAATGACACCTTCCTTGGCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059407.9
ENSMUST00000192477.2