Pregenerated sensors for SLIRP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021040Ensembl transcript IDs: ENSMUST00000077462.8, ENSMUST00000160488.8, ENSMUST00000160880.2, ENSMUST00000161023.8
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCACGTGGGGATGTAACTCAGGAGAGCCTGGGCTTAGCATACGCGTaGACTCTGCACTCAGTCCCTGGCACCAGAGCTGAAGAGAGGTCT | + |
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Preference number: 1 (lower is better) Translates to: PRGDVTQESLGLAYA*TLHSVPGTRAEERS Trigger: AGACCTCTCTTCAGCTCTGGTGCCAGGGACTGAGTGCAGAGTGCACGCGTATGCTAAGCCCAGGCTCTCCTGAGTTACATCCCCACGTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160488.8 |
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| 3UTR TCA 90 bp | CTTAGCATACGCGTGCACTCTGCACTCAGTCCCTGGCACCAGAGCTaGAGAGAGGTCTTCAGGGACTTCCCTTTTCAGACTCGCACGCAC | + |
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Preference number: 1 (lower is better) Translates to: LSIRVHSALSPWHQS*REVFRDFPFQTRTH Trigger: GTGCGTGCGAGTCTGAAAAGGGAAGTCCCTGAAGACCTCTCTTCAGCTCTGGTGCCAGGGACTGAGTGCAGAGTGCACGCGTATGCTAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160488.8 |
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| 3UTR TCA 90 bp | AAATCTGACATATGCAGCAGAGGACTGCCTGGTCTGGCCTCATTGTaGACAGATGTCCCCACCCCCTCCAGACACTTGAGACTCCAGGGA | + |
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Preference number: 1 (lower is better) Translates to: KSDICSRGLPGLASL*TDVPTPSRHLRLQG Trigger: TCCCTGGAGTCTCAAGTGTCTGGAGGGGGTGGGGACATCTGTTCACAATGAGGCCAGACCAGGCAGTCCTCTGCTGCATATGTCAGATTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 90 bp | GTGAGTGGGCTAATGTTCACACACTGGAGCTCTGTCAACTGCATTTaGCCTGTGTGCTTCTCCACCGCGCCATGGGGAACTAAGGTCTTG | + |
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Preference number: 1 (lower is better) Translates to: VSGLMFTHWSSVNCI*PVCFSTAPWGTKVL Trigger: CAAGACCTTAGTTCCCCATGGCGCGGTGGAGAAGCACACAGGGCAAATGCAGTTGACAGAGCTCCAGTGTGTGAACATTAGCCCACTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR CCA 90 bp | GCCAGGCTGGCCTTTGTAAACCAGATCTGCTTGACTCTCTGCTCCTaGGTGTCTCGATTAAGGTTGTGCACCACCACACCCAGCCATATG | + |
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Preference number: 1 (lower is better) Translates to: ARLAFVNQICLTLCS*VSRLRLCTTTPSHM Trigger: CATATGGCTGGGTGTGGTGGTGCACAACCTTAATCGAGACACCCAGGAGCAGAGAGTCAAGCAGATCTGGTTTACAAAGGCCAGCCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 90 bp | CAAATGGTGAGTGGGCTAATGTTCACACACTGGAGCTCTGTCAACTaGATTTGCCCTGTGTGCTTCTCCACCGCGCCATGGGGAACTAAG | + |
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Preference number: 1 (lower is better) Translates to: QMVSGLMFTHWSSVN*ICPVCFSTAPWGTK Trigger: CTTAGTTCCCCATGGCGCGGTGGAGAAGCACACAGGGCAAATGCAGTTGACAGAGCTCCAGTGTGTGAACATTAGCCCACTCACCATTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR CCA 90 bp | CCTGCCCAGTCTGCTCTGAGGTTTCCTGTCTACATCTTCAGAGGATaGAGTTACAGGCAAGCTTCCACAGCCACCTGTCATTTACACGGG | + |
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Preference number: 1 (lower is better) Translates to: PAQSALRFPVYIFRG*SYRQASTATCHLHG Trigger: CCCGTGTAAATGACAGGTGGCTGTGGAAGCTTGCCTGTAACTCCATCCTCTGAAGATGTAGACAGGAAACCTCAGAGCAGACTGGGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 90 bp | CTAATGTTCACACACTGGAGCTCTGTCAACTGCATTTGCCCTGTGTaGTTCTCCACCGCGCCATGGGGAACTAAGGTCTTGCTTAGTGCA | + |
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Preference number: 1 (lower is better) Translates to: LMFTHWSSVNCICPV*FSTAPWGTKVLLSA Trigger: TGCACTAAGCAAGACCTTAGTTCCCCATGGCGCGGTGGAGAAGCACACAGGGCAAATGCAGTTGACAGAGCTCCAGTGTGTGAACATTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 90 bp | CCACAGCCACCTGTCATTTACACGGGTTCAAGGAATCCACACTTGTaGCCTCAGGCTTATGCAGAAAGTGCTGTAACACTGAGCCATCTC | + |
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Preference number: 1 (lower is better) Translates to: PQPPVIYTGSRNPHL*PQAYAESAVTLSHL Trigger: GAGATGGCTCAGTGTTACAGCACTTTCTGCATAAGCCTGAGGGCACAAGTGTGGATTCCTTGAACCCGTGTAAATGACAGGTGGCTGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR TCA 90 bp | TTCCAGAACTCACTGAGAGAGTTAGTCTTCCTGCCCAGTCTGCTCTaGGGTTTCCTGTCTACATCTTCAGAGGATGGAGTTACAGGCAAG | + |
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Preference number: 1 (lower is better) Translates to: FQNSLRELVFLPSLL*GFLSTSSEDGVTGK Trigger: CTTGCCTGTAACTCCATCCTCTGAAGATGTAGACAGGAAACCTCAGAGCAGACTGGGCAGGAAGACTAACTCTCTCAGTGAGTTCTGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 90 bp | GGGTTCAAGGAATCCACACTTGTGCCCTCAGGCTTATGCAGAAAGTaGTGTAACACTGAGCCATCTCTGCAGCACCCTATTATCTCTCTT | + |
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Preference number: 1 (lower is better) Translates to: GFKESTLVPSGLCRK*CNTEPSLQHPIISL Trigger: AAGAGAGATAATAGGGTGCTGCAGAGATGGCTCAGTGTTACAGCACTTTCTGCATAAGCCTGAGGGCACAAGTGTGGATTCCTTGAACCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 90 bp | CATTTACACGGGTTCAAGGAATCCACACTTGTGCCCTCAGGCTTATaGAGAAAGTGCTGTAACACTGAGCCATCTCTGCAGCACCCTATT | + |
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Preference number: 1 (lower is better) Translates to: HLHGFKESTLVPSGL*RKCCNTEPSLQHPI Trigger: AATAGGGTGCTGCAGAGATGGCTCAGTGTTACAGCACTTTCTGCATAAGCCTGAGGGCACAAGTGTGGATTCCTTGAACCCGTGTAAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR CCA 90 bp | ACCTTTTCTGTAAACGTTATGAATAACCTCACCTCAAATGGTGAGTaGGCTAATGTTCACACACTGGAGCTCTGTCAACTGCATTTGCCC | + |
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Preference number: 1 (lower is better) Translates to: TFSVNVMNNLTSNGE*ANVHTLELCQLHLP Trigger: GGGCAAATGCAGTTGACAGAGCTCCAGTGTGTGAACATTAGCCCACTCACCATTTGAGGTGAGGTTATTCATAACGTTTACAGAAAAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR TCA 90 bp | TTTCATTGTGATTTAACGGATAGTGACATTCTCAGGCAGTTGAGGTaGTGTTTGTTAGCATCATTGTCCAGTACCTACAATATAATCCTT | + |
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Preference number: 1 (lower is better) Translates to: FHCDLTDSDILRQLR*CLLASLSSTYNIIL Trigger: AAGGATTATATTGTAGGTACTGGACAATGATGCTAACAAACATCACCTCAACTGCCTGAGAATGTCACTATCCGTTAAATCACAATGAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGCTGTGCAATGTAAGCTAGGCTGGGCAGGAGTCAGAATGAAAGTTCCACATGGGCGTCCTAGTGGGTaGGGGTGGGGACATCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: TAVQCKLGWAGVRMKVPHGRPSG*GWGHPL Trigger: AAGAGGATGTCCCCACCCCCACCCACTAGGACGCCC...ATGTGGAACTTTCATTCTGACTCCTGCCCAGCCTAGCTTACATTGCACAGCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR GCA 90 bp | TCTACATCTTCAGAGGATGGAGTTACAGGCAAGCTTCCACAGCCACCTGTCATTTGCATTTGCCCTGTGTaGTTCTCCACCGCGCCATGG | + |
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Preference number: 2 (lower is better) Translates to: STSSEDGVTGKLPQPPVICICPV*FSTAPW Trigger: CCATGGCGCGGTGGAGAAGCACACAGGGCAAATGCA...AATGACAGGTGGCTGTGGAAGCTTGCCTGTAACTCCATCCTCTGAAGATGTAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR TCA 90 bp | CAATTGAGTTTGACCATATTCACTTTCCTCCACCTCCTCCCAGATCCACCCTACTTGGACCAGGCTGACTaGAACTCAGACCTACCTGCC | + |
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Preference number: 2 (lower is better) Translates to: QLSLTIFTFLHLLPDPPYLDQAD*NSDLPA Trigger: GGCAGGTAGGTCTGAGTTTCAGTCAGCCTGGTCCAA...GTAGGGTGGATCTGGGAGGAGGTGGAGGAAAGTGAATATGGTCAAACTCAATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR GCA 90 bp | GGCAAGCTTCCACAGCCACCTGTCATTTACACGGGTTCAAGGAATCCACACTTGTCTCGATTAAGGTTGTaGACCACCACACCCAGCCAT | + |
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Preference number: 2 (lower is better) Translates to: GKLPQPPVIYTGSRNPHLSRLRL*TTTPSH Trigger: ATGGCTGGGTGTGGTGGTGCACAACCTTAATCGAGA...CAAGTGTGGATTCCTTGAACCCGTGTAAATGACAGGTGGCTGTGGAAGCTTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR TCA 90 bp | AGTTACAGGCAAGCTTCCACAGCCACCTGTCATTTACACGGGTTCAAGGAATCCAAGGAAGAGTGCTCATaGCCTCTGCTCTTTTCCCCT | + |
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Preference number: 2 (lower is better) Translates to: SYRQASTATCHLHGFKESKEECS*PLLFSP Trigger: AGGGGAAAAGAGCAGAGGTCATGAGCACTCTTCCTT...GGATTCCTTGAACCCGTGTAAATGACAGGTGGCTGTGGAAGCTTGCCTGTAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CCA 90 bp | GAATATGACATTTGGACCAGGCTGACTGAAACTCAGACCTACCTGCCTGCCTCAACATCCTCTTGGAAATaGGGGAGGAGGAATGGGATG | + |
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Preference number: 2 (lower is better) Translates to: EYDIWTRLTETQTYLPASTSSWK*GRRNGM Trigger: CATCCCATTCCTCCTCCCCCATTTCCAAGAGGATGT...TGAGGCAGGCAGGTAGGTCTGAGTTTCAGTCAGCCTGGTCCAAATGTCATATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CCA 90 bp | GGCAAGCTTCCACAGCCACCTGTCATTTACACGGGTTCAAGGAATCCACACTTGACCTCAAATGGTGAGTaGGCTAATGTTCACACACTG | + |
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Preference number: 2 (lower is better) Translates to: GKLPQPPVIYTGSRNPHLTSNGE*ANVHTL Trigger: CAGTGTGTGAACATTAGCCCACTCACCATTTGAGGT...CAAGTGTGGATTCCTTGAACCCGTGTAAATGACAGGTGGCTGTGGAAGCTTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCAAGCTTCCACAGCCACCTGTCATTTACACGGGTTCAAGGAATCCACACTTTTGACTCTCTGCTCCTaGGTGTCTCGATTAAGGTTG | + |
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Preference number: 2 (lower is better) Translates to: RQASTATCHLHGFKESTLLTLCS*VSRLRL Trigger: CAACCTTAATCGAGACACCCAGGAGCAGAGAGTCAA...AAGTGTGGATTCCTTGAACCCGTGTAAATGACAGGTGGCTGTGGAAGCTTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR TCA 90 bp | TCTACATCTTCAGAGGATGGAGTTACAGGCAAGCTTCCACAGCCACCTGTCATTTGCCCCACACAGAATTaGGATTCCTTCCTTGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: STSSEDGVTGKLPQPPVICPTQN*DSFLVC Trigger: ACACACAAGGAAGGAATCTCAATTCTGTGTGGGGCA...AATGACAGGTGGCTGTGGAAGCTTGCCTGTAACTCCATCCTCTGAAGATGTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR TCA 90 bp | GGCAAGCTTCCACAGCCACCTGTCATTTACACGGGTTCAAGGAATCCACACTTGGGGCAGGAGTCAGAATaGAAGTTCCACATAAGTAAA | + |
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Preference number: 2 (lower is better) Translates to: GKLPQPPVIYTGSRNPHLGQESE*KFHISK Trigger: TTTACTTATGTGGAACTTTCATTCTGACTCCTGCCC...CAAGTGTGGATTCCTTGAACCCGTGTAAATGACAGGTGGCTGTGGAAGCTTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR GCA 90 bp | AGGCAAGCTTCCACAGCCACCTGTCATTTACACGGGTTCAAGGAATCCACACTTAGTGCTCATGACCTCTaGTCTTTTCCCCTAGATTTG | + |
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Preference number: 2 (lower is better) Translates to: RQASTATCHLHGFKESTLSAHDL*SFPLDL Trigger: CAAATCTAGGGGAAAAGAGCAGAGGTCATGAGCACT...AAGTGTGGATTCCTTGAACCCGTGTAAATGACAGGTGGCTGTGGAAGCTTGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR TCA 90 bp | CTTCCAACTTATTCACTGAGGCAGATCTCTCAGTCCATTCCAGAACTCACTGAGGGCTGTCTTAGAATATaGCATTTGGACCAGGCTGAC | + |
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Preference number: 2 (lower is better) Translates to: LPTYSLRQISQSIPELTEGCLRI*HLDQAD Trigger: GTCAGCCTGGTCCAAATGTCATATTCTAAGACAGCC...CTCAGTGAGTTCTGGAATGGACTGAGAGATCTGCCTCAGTGAATAAGTTGGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR GCA 90 bp | ATTCCAGAACTCACTGAGAGAGTTAGTCTTCCTGCCCAGTCTGCTCTGAGGTTTACTAAATCTGACATATaGAGCAGAGGACTGCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: IPELTERVSLPAQSALRFTKSDI*SRGLPG Trigger: ACCAGGCAGTCCTCTGCTGCATATGTCAGATTTAGT...AAACCTCAGAGCAGACTGGGCAGGAAGACTAACTCTCTCAGTGAGTTCTGGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CCA 90 bp | ATTCCAGAACTCACTGAGAGAGTTAGTCTTCCTGCCCAGTCTGCTCTGAGGTTTTACATCTTCAGAGGATaGAGTTACAGGCAAGCTTCC | + |
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Preference number: 2 (lower is better) Translates to: IPELTERVSLPAQSALRFYIFRG*SYRQAS Trigger: GGAAGCTTGCCTGTAACTCCATCCTCTGAAGATGTA...AAACCTCAGAGCAGACTGGGCAGGAAGACTAACTCTCTCAGTGAGTTCTGGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR GCA 90 bp | TCTACATCTTCAGAGGATGGAGTTACAGGCAAGCTTCCACAGCCACCTGTCATTATGGGGTTATGTTTGTaGTTCTCCAATCTTGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: STSSEDGVTGKLPQPPVIMGLCL*FSNLAA Trigger: TGCTGCAAGATTGGAGAAGCACAAACATAACCCCAT...AATGACAGGTGGCTGTGGAAGCTTGCCTGTAACTCCATCCTCTGAAGATGTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CCA 90 bp | TTTAGTTCTGGATTTTTGAAGATGTATTCCTTATGTATCCCTGGCTGTATTGGAGAGGACTGCCTGGTCTaGCCTCATTGTGAACAGATG | + |
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Preference number: 2 (lower is better) Translates to: FSSGFLKMYSLCIPGCIGEDCLV*PHCEQM Trigger: CATCTGTTCACAATGAGGCCAGACCAGGCAGTCCTC...TCCAATACAGCCAGGGATACATAAGGAATACATCTTCAAAAATCCAGAACTAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CCA 90 bp | AAAGTGGTCATCTCTTCAGACCTTAAGCTTAAACCTTTTAAAACCCTGGGAAACTATCCCTGGCTGTATTaGAATTTACTATGTGAGCCA | + |
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Preference number: 2 (lower is better) Translates to: KVVISSDLKLKPFKTLGNYPWLY*NLLCEP Trigger: TGGCTCACATAGTAAATTCCAATACAGCCAGGGATA...GTTTCCCAGGGTTTTAAAAGGTTTAAGCTTAAGGTCTGAAGAGATGACCACTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CCA 90 bp | ATGCATATGTTAATGTTGGAAGTTGATGTTAGGAATTGTCTTTATCACTCTCCCCTAATGTTCACACACTaGAGCTCTGTCAACTGCATT | + |
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Preference number: 2 (lower is better) Translates to: MHMLMLEVDVRNCLYHSPLMFTH*SSVNCI Trigger: AATGCAGTTGACAGAGCTCCAGTGTGTGAACATTAG...GGGAGAGTGATAAAGACAATTCCTAACATCAACTTCCAACATTAACATATGCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CCA 90 bp | TTTAGTTCTGGATTTTTGAAGATGTATTCCTTATGTATCCCTGGCTGTATTGGACACTCCTTTTCATTCTaGGATGTAGGGGCATTGATT | + |
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Preference number: 2 (lower is better) Translates to: FSSGFLKMYSLCIPGCIGHSFSF*DVGALI Trigger: AATCAATGCCCCTACATCCCAGAATGAAAAGGAGTG...TCCAATACAGCCAGGGATACATAAGGAATACATCTTCAAAAATCCAGAACTAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CCA 90 bp | AAAGTGGTCATCTCTTCAGACCTTAAGCTTAAACCTTTTAAAACCCTGGGAAACTTCCTTATGTATCCCTaGCTGTATTGGAATTTACTA | + |
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Preference number: 2 (lower is better) Translates to: KVVISSDLKLKPFKTLGNFLMYP*LYWNLL Trigger: TAGTAAATTCCAATACAGCCAGGGATACATAAGGAA...GTTTCCCAGGGTTTTAAAAGGTTTAAGCTTAAGGTCTGAAGAGATGACCACTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 72 bp | GATGTAACTCAGGAGAGCCTGGGCTTAGCATACGCGTaGACTCTGCACTCAGTCCCTGGCACCAGAGCTGAA | + |
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Preference number: 3 (lower is better) Translates to: DVTQESLGLAYA*TLHSVPGTRAE Trigger: TTCAGCTCTGGTGCCAGGGACTGAGTGCAGAGTGCACGCGTATGCTAAGCCCAGGCTCTCCTGAGTTACATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160488.8 |
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| 3UTR TCA 72 bp | ATATGCAGCAGAGGACTGCCTGGTCTGGCCTCATTGTaGACAGATGTCCCCACCCCCTCCAGACACTTGAGA | + |
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Preference number: 3 (lower is better) Translates to: ICSRGLPGLASL*TDVPTPSRHLR Trigger: TCTCAAGTGTCTGGAGGGGGTGGGGACATCTGTTCACAATGAGGCCAGACCAGGCAGTCCTCTGCTGCATAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 72 bp | ACACACTGGAGCTCTGTCAACTGCATTTGCCCTGTGTaGTTCTCCACCGCGCCATGGGGAACTAAGGTCTTG | + |
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Preference number: 3 (lower is better) Translates to: THWSSVNCICPV*FSTAPWGTKVL Trigger: CAAGACCTTAGTTCCCCATGGCGCGGTGGAGAAGCACACAGGGCAAATGCAGTTGACAGAGCTCCAGTGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 72 bp | AGTGGGCTAATGTTCACACACTGGAGCTCTGTCAACTaGATTTGCCCTGTGTGCTTCTCCACCGCGCCATGG | + |
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Preference number: 3 (lower is better) Translates to: SGLMFTHWSSVN*ICPVCFSTAPW Trigger: CCATGGCGCGGTGGAGAAGCACACAGGGCAAATGCAGTTGACAGAGCTCCAGTGTGTGAACATTAGCCCACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 72 bp | CTAATGTTCACACACTGGAGCTCTGTCAACTGCATTTaGCCTGTGTGCTTCTCCACCGCGCCATGGGGAACT | + |
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Preference number: 3 (lower is better) Translates to: LMFTHWSSVNCI*PVCFSTAPWGT Trigger: AGTTCCCCATGGCGCGGTGGAGAAGCACACAGGGCAAATGCAGTTGACAGAGCTCCAGTGTGTGAACATTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR CCA 72 bp | CTAAATCTGACATATGCAGCAGAGGACTGCCTGGTCTaGCCTCATTGTGAACAGATGTCCCCACCCCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: LNLTYAAEDCLV*PHCEQMSPPPP Trigger: TGGAGGGGGTGGGGACATCTGTTCACAATGAGGCCAGACCAGGCAGTCCTCTGCTGCATATGTCAGATTTAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 72 bp | AGGCTGGCCTTTGTAAACCAGATCTGCTTGACTCTCTaGTCCTGGGTGTCTCGATTAAGGTTGTGCACCACC | + |
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Preference number: 3 (lower is better) Translates to: RLAFVNQICLTL*SWVSRLRLCTT Trigger: GGTGGTGCACAACCTTAATCGAGACACCCAGGAGCAGAGAGTCAAGCAGATCTGGTTTACAAAGGCCAGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR CCA 72 bp | GCCTTTGTAAACCAGATCTGCTTGACTCTCTGCTCCTaGGTGTCTCGATTAAGGTTGTGCACCACCACACCC | + |
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Preference number: 3 (lower is better) Translates to: AFVNQICLTLCS*VSRLRLCTTTP Trigger: GGGTGTGGTGGTGCACAACCTTAATCGAGACACCCAGGAGCAGAGAGTCAAGCAGATCTGGTTTACAAAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CAA 90 bp | TCTACATCTTCAGAGGATGGAGTTACAGGCAAGCTTCCACAGCCACCTGTCATTGTAAACCAGATCTGCTaGACTCTCTGCTCCTGGGTG | + |
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Preference number: 3 (lower is better) Translates to: STSSEDGVTGKLPQPPVIVNQIC*TLCSWV Trigger: CACCCAGGAGCAGAGAGTCAAGCAGATCTGGTTTAC...AATGACAGGTGGCTGTGGAAGCTTGCCTGTAACTCCATCCTCTGAAGATGTAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 72 bp | GAATCCACACTTGTGCCCTCAGGCTTATGCAGAAAGTaGTGTAACACTGAGCCATCTCTGCAGCACCCTATT | + |
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Preference number: 3 (lower is better) Translates to: ESTLVPSGLCRK*CNTEPSLQHPI Trigger: AATAGGGTGCTGCAGAGATGGCTCAGTGTTACAGCACTTTCTGCATAAGCCTGAGGGCACAAGTGTGGATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CAA 90 bp | TCTACATCTTCAGAGGATGGAGTTACAGGCAAGCTTCCACAGCCACCTGTCATTCTGCCCCACACAGAATaGAGATTCCTTCCTTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: STSSEDGVTGKLPQPPVILPHTE*RFLPCV Trigger: CACACAAGGAAGGAATCTCAATTCTGTGTGGGGCAG...AATGACAGGTGGCTGTGGAAGCTTGCCTGTAACTCCATCCTCTGAAGATGTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CAA 90 bp | GCCTCTTATATATCTCTGGCTGTCTTAGAATATGACATTTGGACCAGGCTGACTGGTGGGGACATCCTCTaGGAAATGGGGGAGGAGGAA | + |
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Preference number: 3 (lower is better) Translates to: ASYISLAVLEYDIWTRLTGGDIL*EMGEEE Trigger: TTCCTCCTCCCCCATTTCCAAGAGGATGTCCCCACC...AGTCAGCCTGGTCCAAATGTCATATTCTAAGACAGCCAGAGATATATAAGAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR TCA 72 bp | TCACTGAGAGAGTTAGTCTTCCTGCCCAGTCTGCTCTaGGGTTTCCTGTCTACATCTTCAGAGGATGGAGTT | + |
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Preference number: 3 (lower is better) Translates to: SLRELVFLPSLL*GFLSTSSEDGV Trigger: AACTCCATCCTCTGAAGATGTAGACAGGAAACCTCAGAGCAGACTGGGCAGGAAGACTAACTCTCTCAGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 72 bp | CCTGTCATTTACACGGGTTCAAGGAATCCACACTTGTaGCCTCAGGCTTATGCAGAAAGTGCTGTAACACTG | + |
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Preference number: 3 (lower is better) Translates to: PVIYTGSRNPHL*PQAYAESAVTL Trigger: CAGTGTTACAGCACTTTCTGCATAAGCCTGAGGGCACAAGTGTGGATTCCTTGAACCCGTGTAAATGACAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CAA 90 bp | CTTCCAACTTATTCACTGAGGCAGATCTCTCAGTCCATTCCAGAACTCACTGAGCTAGTCAGAACTTTGTaGTTTGAGGCAGGGCCTCTT | + |
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Preference number: 3 (lower is better) Translates to: LPTYSLRQISQSIPELTELVRTL*FEAGPL Trigger: AAGAGGCCCTGCCTCAAACAACAAAGTTCTGACTAG...CTCAGTGAGTTCTGGAATGGACTGAGAGATCTGCCTCAGTGAATAAGTTGGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR GCA 72 bp | TTGACTCTCTGCTCCTGGGTGTCTCGATTAAGGTTGTaGACCACCACACCCAGCCATATGTCCTTTATTTTT | + |
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Preference number: 3 (lower is better) Translates to: LTLCSWVSRLRL*TTTPSHMSFIF Trigger: AAAAATAAAGGACATATGGCTGGGTGTGGTGGTGCACAACCTTAATCGAGACACCCAGGAGCAGAGAGTCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CAA 90 bp | ACTGCTGTGCAATGTAAGCTAGGCTGGGCAGGAGTCAGAATGAAAGTTCCACATATTGAGATTCCTTCCTaGTGTGTGACACTAATCCAG | + |
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Preference number: 3 (lower is better) Translates to: TAVQCKLGWAGVRMKVPHIEIPS*CVTLIQ Trigger: CTGGATTAGTGTCACACACAAGGAAGGAATCTCAAT...ATGTGGAACTTTCATTCTGACTCCTGCCCAGCCTAGCTTACATTGCACAGCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGTGGTCATCTCTTCAGACCTTAAGCTTAAACCTTTTAAAACCCTGGGAAACCTCTGTCAACTGCATTaGCCCTGTGTGCTTCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: KVVISSDLKLKPFKTLGNLCQLH*PCVLLH Trigger: GTGGAGAAGCACACAGGGCAAATGCAGTTGACAGAG...GTTTCCCAGGGTTTTAAAAGGTTTAAGCTTAAGGTCTGAAGAGATGACCACTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CAA 90 bp | ATGCATATGTTAATGTTGGAAGTTGATGTTAGGAATTGTCTTTATCACTCTCCCACCCCCTCCAGACACTaGAGACTCCAGGGAATAGGG | + |
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Preference number: 3 (lower is better) Translates to: MHMLMLEVDVRNCLYHSPTPSRH*RLQGIG Trigger: CCCTATTCCCTGGAGTCTCAAGTGTCTGGAGGGGGT...GGGAGAGTGATAAAGACAATTCCTAACATCAACTTCCAACATTAACATATGCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR CCA 72 bp | GTAAACGTTATGAATAACCTCACCTCAAATGGTGAGTaGGCTAATGTTCACACACTGGAGCTCTGTCAACTG | + |
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Preference number: 3 (lower is better) Translates to: VNVMNNLTSNGE*ANVHTLELCQL Trigger: CAGTTGACAGAGCTCCAGTGTGTGAACATTAGCCCACTCACCATTTGAGGTGAGGTTATTCATAACGTTTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR-3UTR CAA 90 bp | ATTCCAGAACTCACTGAGAGAGTTAGTCTTCCTGCCCAGTCTGCTCTGAGGTTTTCTTTTCCCCTAGATTaGTTCCTGATAAGGAGTTTT | + |
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Preference number: 3 (lower is better) Translates to: IPELTERVSLPAQSALRFSFPLD*FLIRSF Trigger: AAAACTCCTTATCAGGAACAAATCTAGGGGAAAAGA...AAACCTCAGAGCAGACTGGGCAGGAAGACTAACTCTCTCAGTGAGTTCTGGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR TCA 72 bp | AATTGTCTTTATCACTCTCCCTTCCAACTTATTCACTaGGGCAGATCTCTCAGTCCATTCCAGAACTCACTG | + |
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Preference number: 3 (lower is better) Translates to: NCLYHSPFQLIH*GRSLSPFQNSL Trigger: CAGTGAGTTCTGGAATGGACTGAGAGATCTGCCTCAGTGAATAAGTTGGAAGGGAGAGTGATAAAGACAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR CCA 72 bp | TCTTATATATCTCTGGCTGTCTTAGAATATGACATTTaGACCAGGCTGACTGAAACTCAGACCTACCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: SYISLAVLEYDI*TRLTETQTYLP Trigger: AGGCAGGTAGGTCTGAGTTTCAGTCAGCCTGGTCCAAATGTCATATTCTAAGACAGCCAGAGATATATAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR TCA 72 bp | GATTTAACGGATAGTGACATTCTCAGGCAGTTGAGGTaGTGTTTGTTAGCATCATTGTCCAGTACCTACAAT | + |
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Preference number: 3 (lower is better) Translates to: DLTDSDILRQLR*CLLASLSSTYN Trigger: ATTGTAGGTACTGGACAATGATGCTAACAAACATCACCTCAACTGCCTGAGAATGTCACTATCCGTTAAATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| CDS-3UTR CCA 90 bp | TTAGCATACGCGTGCACTCTGCACTCAGTCCCTGGCACCAGAGCTGAAGAGAGGGTGCACCTTCTTACATaGCCAAACTGTGCAAAATGT | + |
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Preference number: 4 (lower is better) Translates to: LAYACTLHSVPGTRAEERVHLLT*PNCAKC Trigger: ACATTTTGCACAGTTTGGCCATGTAAGAAGGTGCAC...CCTCTCTTCAGCTCTGGTGCCAGGGACTGAGTGCAGAGTGCACGCGTATGCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160488.8 |
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| 3UTR CAA 72 bp | TGCTTGACTCTCTGCTCCTGGGTGTCTCGATTAAGGTaGTGCACCACCACACCCAGCCATATGTCCTTTATT | + |
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Preference number: 4 (lower is better) Translates to: CLTLCSWVSRLR*CTTTPSHMSFI Trigger: AATAAAGGACATATGGCTGGGTGTGGTGGTGCACAACCTTAATCGAGACACCCAGGAGCAGAGAGTCAAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| 3UTR CAA 72 bp | ATCAGATGTTTGAGCTCCGTGCAAAGCCTTTGCTCTTaGAGCTTGAACGTGGATCTATGGGAGGGAAAGCAC | + |
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Preference number: 4 (lower is better) Translates to: IRCLSSVQSLCS*SLNVDLWEGKH Trigger: GTGCTTTCCCTCCCATAGATCCACGTTCAAGCTCAAAGAGCAAAGGCTTTGCACGGAGCTCAAACATCTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160488.8 |
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| 3UTR CAA 72 bp | CCACCTGTCATTTACACGGGTTCAAGGAATCCACACTaGTGCCCTCAGGCTTATGCAGAAAGTGCTGTAACA | + |
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Preference number: 4 (lower is better) Translates to: PPVIYTGSRNPH*CPQAYAESAVT Trigger: TGTTACAGCACTTTCTGCATAAGCCTGAGGGCACAAGTGTGGATTCCTTGAACCCGTGTAAATGACAGGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| CDS-3UTR GCA 90 bp | ATTCCAGAACTCACTGAGAGAGTTAGTCTTCCTGCCCAGTCTGCTCTGAGGTTTTCCGTGCAAAGCCTTTaGTCTTTGAGCTTGAACGTG | + |
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Preference number: 4 (lower is better) Translates to: IPELTERVSLPAQSALRFSVQSL*SLSLNV Trigger: CACGTTCAAGCTCAAAGAGCAAAGGCTTTGCACGGA...AAACCTCAGAGCAGACTGGGCAGGAAGACTAACTCTCTCAGTGAGTTCTGGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| CDS-3UTR GCA 90 bp | CAATTGAGTTTGACCATATTCACTTTCCTCCACCTCCTCCCAGATCCACCCTACTACATGGCCAAACTGTaGAAAATGTTCTCTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: QLSLTIFTFLHLLPDPPYYMAKL*KMFSQL Trigger: GAGCTGAGAGAACATTTTGCACAGTTTGGCCATGTA...GTAGGGTGGATCTGGGAGGAGGTGGAGGAAAGTGAATATGGTCAAACTCAATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| CDS-3UTR GCA 90 bp | CAGAAATCTTTCTTCATCAGATGTTTGAGCTCCGTGCAAAGCCTTTGCTCTTTGTACATGGCCAAACTGTaGAAAATGTTCTCTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: QKSFFIRCLSSVQSLCSLYMAKL*KMFSQL Trigger: GAGCTGAGAGAACATTTTGCACAGTTTGGCCATGTA...CAAAGAGCAAAGGCTTTGCACGGAGCTCAAACATCTGATGAAGAAAGATTTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160488.8 ENSMUST00000160880.2 |
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| 3UTR CAA 72 bp | GGAATTTGGTCTTTGAAGAATTTCATACAATTGAGTTaGACCATATTCACTTTCCTCCACCTCCTCCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: GIWSLKNFIQLS*TIFTFLHLLPD Trigger: ATCTGGGAGGAGGTGGAGGAAAGTGAATATGGTCAAACTCAATTGTATGAAATTCTTCAAAGACCAAATTCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| CDS-3UTR GCA 90 bp | CTCAATTCTGTTTATTTAGTGGACGGTACACTGATCATCTCAGAAATCTTTCTTTACATGGCCAAACTGTaGAAAATGTTCTCTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LNSVYLVDGTLIISEIFLYMAKL*KMFSQL Trigger: GAGCTGAGAGAACATTTTGCACAGTTTGGCCATGTA...AAGAAAGATTTCTGAGATGATCAGTGTACCGTCCACTAAATAAACAGAATTGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160488.8 ENSMUST00000160880.2 |
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| CDS-3UTR CCA 90 bp | TGTTTATTTAGTGGACGGTACACTGATCATCTCAGAAATCTTTCTTCATCAGATGTGCACCTTCTTACATaGCCAAACTGTGCAAAATGT | + |
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Preference number: 4 (lower is better) Translates to: CLFSGRYTDHLRNLSSSDVHLLT*PNCAKC Trigger: ACATTTTGCACAGTTTGGCCATGTAAGAAGGTGCAC...ATCTGATGAAGAAAGATTTCTGAGATGATCAGTGTACCGTCCACTAAATAAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160488.8 ENSMUST00000160880.2 |
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| CDS-3UTR CCA 90 bp | ATGCATATGTTAATGTTGGAAGTTGATGTTAGGAATTGTCTTTATCACTCTCCCGTGCACCTTCTTACATaGCCAAACTGTGCAAAATGT | + |
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Preference number: 4 (lower is better) Translates to: MHMLMLEVDVRNCLYHSPVHLLT*PNCAKC Trigger: ACATTTTGCACAGTTTGGCCATGTAAGAAGGTGCAC...GGGAGAGTGATAAAGACAATTCCTAACATCAACTTCCAACATTAACATATGCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| CDS-3UTR CAA 90 bp | TCCAGACACTTGAGACTCCAGGGAATAGGGCGTCCTAGTGGGTGGGGGTGGGGACTCCGTGCAAAGCCTTaGCTCTTTGAGCTTGAACGT | + |
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Preference number: 5 (lower is better) Translates to: SRHLRLQGIGRPSGWGWGLRAKP*LFELER Trigger: ACGTTCAAGCTCAAAGAGCAAAGGCTTTGCACGGAG...TCCCCACCCCCACCCACTAGGACGCCCTATTCCCTGGAGTCTCAAGTGTCTGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| CDS GCA 90 bp | CTCTTTGTCAAAAGGTACAGTGCACCTTCTTACATGGCCAAACTGTaGAAAATGTTCTCTCAGCTCACTCGCTGCCGCGGTCCAAGGAAT | + |
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Preference number: 5 (lower is better) Translates to: LFVKRYSAPSYMAKL*KMFSQLTRCRGPRN Trigger: ATTCCTTGGACCGCGGCAGCGAGTGAGCTGAGAGAACATTTTGCACAGTTTGGCCATGTAAGAAGGTGCACTGTACCTTTTGACAAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160488.8 ENSMUST00000161023.8 |
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| CDS-3UTR CAA 90 bp | GGCAAGCTTCCACAGCCACCTGTCATTTACACGGGTTCAAGGAATCCACACTTGCTTTGCTCTTTGAGCTaGAACGTGGATTTTTACTCC | + |
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Preference number: 5 (lower is better) Translates to: GKLPQPPVIYTGSRNPHLLCSLS*NVDFYS Trigger: GGAGTAAAAATCCACGTTCAAGCTCAAAGAGCAAAG...CAAGTGTGGATTCCTTGAACCCGTGTAAATGACAGGTGGCTGTGGAAGCTTGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| CDS-3UTR CAA 90 bp | GAATATGACATTTGGACCAGGCTGACTGAAACTCAGACCTACCTGCCTGCCTCACAAAGCCTTTGCTCTTaGAGCTTGAACGTGGATTTT | + |
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Preference number: 5 (lower is better) Translates to: EYDIWTRLTETQTYLPASQSLCS*SLNVDF Trigger: AAAATCCACGTTCAAGCTCAAAGAGCAAAGGCTTTG...TGAGGCAGGCAGGTAGGTCTGAGTTTCAGTCAGCCTGGTCCAAATGTCATATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161023.8 |
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| CDS GCA 72 bp | TCTGTGAAAGCCAGTCTCTTTGTCATGGCCAAACTGTaGAAAATGTTCTCTCAGCTCACTCGCTGCCGCGGT | + |
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Preference number: 6 (lower is better) Translates to: SVKASLFVMAKL*KMFSQLTRCRG Trigger: ACCGCGGCAGCGAGTGAGCTGAGAGAACATTTTGCACAGTTTGGCCATGACAAAGAGACTGGCTTTCACAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077462.8 |
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| CDS GCA 72 bp | AAAAGGTACAGTGCACCTTCTTACATGGCCAAACTGTaGAAAATGTTCTCTCAGCTCACTCGCTGCCGCGGT | + |
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Preference number: 6 (lower is better) Translates to: KRYSAPSYMAKL*KMFSQLTRCRG Trigger: ACCGCGGCAGCGAGTGAGCTGAGAGAACATTTTGCACAGTTTGGCCATGTAAGAAGGTGCACTGTACCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160488.8 ENSMUST00000160880.2 ENSMUST00000161023.8 |
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