RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLFN5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054404

Ensembl transcript IDs: ENSMUST00000067443.10, ENSMUST00000108157.2, ENSMUST00000108158.9

Found 201 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AACCAGGCTGGCCTCCAACTCAGAGATCCACCTGCCTCTGCCTTCTaGGTTCTGGGGTTAAAGGTGTGTGCCATCACTTCCTGGCTAGAA +
Preference number: 1 (lower is better)
Translates to: NQAGLQLRDPPASAF*VLGLKVCAITSWLE
Trigger: TTCTAGCCAGGAAGTGATGGCACACACCTTTAACCCCAGAACTCAGAAGGCAGAGGCAGGTGGATCTCTGAGTTGGAGGCCAGCCTGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR GCA 90 bp AACTCACTCTGTAAACCAGGCTGGCCTCCAACTCAGAGATCCACCTaGCTCTGCCTTCTGAGTTCTGGGGTTAAAGGTGTGTGCCATCAC +
Preference number: 1 (lower is better)
Translates to: NSLCKPGWPPTQRST*LCLLSSGVKGVCHH
Trigger: GTGATGGCACACACCTTTAACCCCAGAACTCAGAAGGCAGAGGCAGGTGGATCTCTGAGTTGGAGGCCAGCCTGGTTTACAGAGTGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR TCA 90 bp ATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCCTGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACT +
Preference number: 1 (lower is better)
Translates to: ISLQMVVSHHVVAGI*TPDLRKSSRVLLPT
Trigger: AGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR GCA 90 bp AGAGAGAGAGAGAGAGAGAGAAAGGATATCTCAGTGCCAGCTAATTaGTCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATAT +
Preference number: 1 (lower is better)
Translates to: RERERERKDISVPAN*SAVSSYCLHPPYSY
Trigger: ATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTCTCTCTCTCTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR TCA 90 bp TCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTaGGTGTGGCTGATTGTACATGAAATGTTTTTGGTGCTTAAATGT +
Preference number: 1 (lower is better)
Translates to: SLPTVYIPHTHICLP*VWLIVHEMFLVLKC
Trigger: ACATTTAAGCACCAAAAACATTTCATGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
3UTR TCA 90 bp GCTAAACTGAACTGGACTCACCCTGAAATCATAGCTTGCAGTTTGTaGACTTACATTTCAAACTATGTCCTGCTAAAGATGGACACACTC +
Preference number: 1 (lower is better)
Translates to: AKLNWTHPEIIACSL*TYISNYVLLKMDTL
Trigger: GAGTGTGTCCATCTTTAGCAGGACATAGTTTGAAATGTAAGTTCACAAACTGCAAGCTATGATTTCAGGGTGAGTCCAGTTCAGTTTAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR TCA 90 bp CCACATAAATACAAGGGCGATCTCACTTTTTATGGCTTCGTGATATaGTGGTGTGTTGTGATTTTCTGTAAATTACTCCCTTCAACTCAT +
Preference number: 1 (lower is better)
Translates to: PHKYKGDLTFYGFVI*WCVVIFCKLLPSTH
Trigger: ATGAGTTGAAGGGAGTAATTTACAGAAAATCACAACACACCATCATATCACGAAGCCATAAAAAGTGAGATCGCCCTTGTATTTATGTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR GCA 90 bp AGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGGAAATTTTTCTAGATCCACTTGCCTCTaGCTCCTGAGTGCTGGGATT +
Preference number: 2 (lower is better)
Translates to: SSRVLLPTEPSHQPGNFSRSTCL*LLSAGI
Trigger: AATCCCAGCACTCAGGAGGCAGAGGCAAGTGGATCT...AGAAAAATTTCCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR CAA 90 bp CAGTATGTAACCCTGGTTAGCCCGAAACTCACTATGTGGACCAGGTaGGACTCAAACTCACGGAGATCCACTTGCCTCTGCCTCCTGAGT +
Preference number: 2 (lower is better)
Translates to: QYVTLVSPKLTMWTR*DSNSRRSTCLCLLS
Trigger: ACTCAGGAGGCAGAGGCAAGTGGATCTCCGTGAGTTTGAGTCCAACCTGGTCCACATAGTGAGTTTCGGGCTAACCAGGGTTACATACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR TCA 90 bp CATGGTAGAGAACCTAGAGTCCAAAAGAGCAGAAGCTGTCTTTCTCCCTGGGCACTTCGAAAGGCTGTTTaGACTGGGGAGCGCACAGAG +
Preference number: 2 (lower is better)
Translates to: HGREPRVQKSRSCLSPWALRKAV*TGERTE
Trigger: CTCTGTGCGCTCCCCAGTTCAAACAGCCTTTCGAAG...TGCCCAGGGAGAAAGACAGCTTCTGCTCTTTTGGACTCTAGGTTCTCTACCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR GCA 90 bp TACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACAGTCAGTGCCAGCTAATTaGTCTGCTGTCTCTTCCTAC +
Preference number: 2 (lower is better)
Translates to: YTVAVLRHSRRGSQISLQSVPAN*SAVSSY
Trigger: GTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGA...CTGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR GCA 90 bp TACAAACATCCAAGCATATCATGGCCATTGCCAGGTCTTTCTCTCCAAACAGCATCACGGAGATCCACTTaGCTCTGCCTCCTGAGTGCT +
Preference number: 2 (lower is better)
Translates to: YKHPSISWPLPGLSLQTASRRST*LCLLSA
Trigger: AGCACTCAGGAGGCAGAGGCAAGTGGATCTCCGTGA...TGCTGTTTGGAGAGAAAGACCTGGCAATGGCCATGATATGCTTGGATGTTTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR CCA 90 bp CAGAAGCTGTCTTTCTCCCTGGGCACCGATGCCCCTGCTCCAGAGATTTTAAGGTGTGCCATCACTTCCTaGCTAGAAGTAAATTTCTTT +
Preference number: 2 (lower is better)
Translates to: QKLSFSLGTDAPAPEILRCAITS*LEVNFF
Trigger: AAAGAAATTTACTTCTAGCCAGGAAGTGATGGCACA...CCTTAAAATCTCTGGAGCAGGGGCATCGGTGCCCAGGGAGAAAGACAGCTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR TCA 90 bp CATGGTAGAGAACCTAGAGTCCAAAAGAGCAGAAGCTGTCTTTCTCCCTGGGCATGCCCTGAGTGTGGCTaGTTGTACATGAAATGTTTT +
Preference number: 2 (lower is better)
Translates to: HGREPRVQKSRSCLSPWACPECG*LYMKCF
Trigger: AAAACATTTCATGTACAATCAGCCACACTCAGGGCA...TGCCCAGGGAGAAAGACAGCTTCTGCTCTTTTGGACTCTAGGTTCTCTACCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR GCA 90 bp CATGGTAGAGAACCTAGAGTCCAAAAGAGCAGAAGCTGTCTTTCTCCCTGGGCATGTGCAAGCTGTCTGTaGAGAATAAGTTCCTTAGGA +
Preference number: 2 (lower is better)
Translates to: HGREPRVQKSRSCLSPWACASCL*RISSLG
Trigger: TCCTAAGGAACTTATTCTGCACAGACAGCTTGCACA...TGCCCAGGGAGAAAGACAGCTTCTGCTCTTTTGGACTCTAGGTTCTCTACCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR GCA 90 bp TACAAACATCCAAGCATATCATGGCCATTGCCAGGTCTTTCTCTCCAAACAGCACTGAGATTAAAGCTATaGACCACCACTACCTGGCTC +
Preference number: 2 (lower is better)
Translates to: YKHPSISWPLPGLSLQTALRLKL*TTTTWL
Trigger: GAGCCAGGTAGTGGTGGTGCATAGCTTTAATCTCAG...TGCTGTTTGGAGAGAAAGACCTGGCAATGGCCATGATATGCTTGGATGTTTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR GCA 90 bp CATGGTAGAGAACCTAGAGTCCAAAAGAGCAGAAGCTGTCTTTCTCCCTGGGCAAATATTTATGACATTTaGTGCCAGCATTTCCCCAGC +
Preference number: 2 (lower is better)
Translates to: HGREPRVQKSRSCLSPWANIYDI*CQHFPS
Trigger: GCTGGGGAAATGCTGGCAGCAAATGTCATAAATATT...TGCCCAGGGAGAAAGACAGCTTCTGCTCTTTTGGACTCTAGGTTCTCTACCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR CCA 90 bp GCAAAGCAAAACTTCATCAAGTGCCACATGGTAGAGAACCTAGAGTCCAAAAGATGGTTTGGCTTGGCTTaGCTTGGCTCAGCTTTGCTT +
Preference number: 2 (lower is better)
Translates to: AKQNFIKCHMVENLESKRWFGLA*LGSALL
Trigger: AAGCAAAGCTGAGCCAAGCCAAGCCAAGCCAAACCA...TCTTTTGGACTCTAGGTTCTCTACCATGTGGCACTTGATGAAGTTTTGCTTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR GCA 90 bp TGGTGTGTTGTGATTTTCTGTAAATTACTCCCTTCAACTCATCTGTATTGTGTTACTCAGAGATCCACCTaGCTCTGCCTTCTGAGTTCT +
Preference number: 2 (lower is better)
Translates to: WCVVIFCKLLPSTHLYCVTQRST*LCLLSS
Trigger: AGAACTCAGAAGGCAGAGGCAGGTGGATCTCTGAGT...AACACAATACAGATGAGTTGAAGGGAGTAATTTACAGAAAATCACAACACACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR GCA 90 bp TCTGTGCTCTTCCTGTCAAATTCTTTGTCCAGTTTTCCTTTAATCTTGGAAATTTTCATGATTTGCTCCTaGAAATCATCCCTGGAAATG +
Preference number: 2 (lower is better)
Translates to: SVLFLSNSLSSFPLILEIFMICS*KSSLEM
Trigger: CATTTCCAGGGATGATTTGCAGGAGCAAATCATGAA...AATTTCCAAGATTAAAGGAAAACTGGACAAAGAATTTGACAGGAAGAGCACAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR GCA 72 bp CCAGGCTGGCCTCCAACTCAGAGATCCACCTGCCTCTaGCTTCTGAGTTCTGGGGTTAAAGGTGTGTGCCAT +
Preference number: 3 (lower is better)
Translates to: PGWPPTQRSTCL*LLSSGVKGVCH
Trigger: ATGGCACACACCTTTAACCCCAGAACTCAGAAGGCAGAGGCAGGTGGATCTCTGAGTTGGAGGCCAGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR GCA 72 bp GGATTTGAACTCCTGACCTTCGGAAGAGCAGTCGGGTaGTCTTACCCACTGAGCCATCTCACCAGCCCGGAA +
Preference number: 3 (lower is better)
Translates to: GFELLTFGRAVG*SYPLSHLTSPE
Trigger: TTCCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR CCA 72 bp CGGCCCTCTACCTTCCAAACCACTGCACCCACACTTTaGCACTTTGACGGTAGTAACTCTGGGTCCCCACAG +
Preference number: 3 (lower is better)
Translates to: RPSTFQTTAPTL*HFDGSNSGSPQ
Trigger: CTGTGGGGACCCAGAGTTACTACCGTCAAAGTGCCAAAGTGTGGGTGCAGTGGTTTGGAAGGTAGAGGGCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR TCA 72 bp GGCCTCCAACTCAGAGATCCACCTGCCTCTGCCTTCTaGGTTCTGGGGTTAAAGGTGTGTGCCATCACTTCC +
Preference number: 3 (lower is better)
Translates to: GLQLRDPPASAF*VLGLKVCAITS
Trigger: GGAAGTGATGGCACACACCTTTAACCCCAGAACTCAGAAGGCAGAGGCAGGTGGATCTCTGAGTTGGAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR TCA 72 bp CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCCTGACCTTCGGAAGAGCAGTCGGGTGCTC +
Preference number: 3 (lower is better)
Translates to: QMVVSHHVVAGI*TPDLRKSSRVL
Trigger: GAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR CCA 72 bp CCCTGGTTAGCCCGAAACTCACTATGTGGACCAGGTTaGACTCAAACTCACGGAGATCCACTTGCCTCTGCC +
Preference number: 3 (lower is better)
Translates to: PWLARNSLCGPG*TQTHGDPLASA
Trigger: GGCAGAGGCAAGTGGATCTCCGTGAGTTTGAGTCCAACCTGGTCCACATAGTGAGTTTCGGGCTAACCAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR TCA 72 bp CCACAGCATCCTTTCTGCTTCATAGCACATGTGTCCTaGTGCCCTACTCTCCAGCCCTCCATTTCCCCAAGC +
Preference number: 3 (lower is better)
Translates to: PQHPFCFIAHVS*CPTLQPSISPS
Trigger: GCTTGGGGAAATGGAGGGCTGGAGAGTAGGGCATCAGGACACATGTGCTATGAAGCAGAAAGGATGCTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR GCA 72 bp TGTAAACCAGGCTGGCCTCCAACTCAGAGATCCACCTaGCTCTGCCTTCTGAGTTCTGGGGTTAAAGGTGTG +
Preference number: 3 (lower is better)
Translates to: CKPGWPPTQRST*LCLLSSGVKGV
Trigger: CACACCTTTAACCCCAGAACTCAGAAGGCAGAGGCAGGTGGATCTCTGAGTTGGAGGCCAGCCTGGTTTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR CAA 90 bp AGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGGAAATTTTTCTTTGGTTTGGTTTGGCTaGGCTTGGCTTGGCTCAGCT +
Preference number: 3 (lower is better)
Translates to: SSRVLLPTEPSHQPGNFSLVWFG*AWLGSA
Trigger: AGCTGAGCCAAGCCAAGCCAAGCCAAACCAAACCAA...AGAAAAATTTCCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR GCA 72 bp TGGACCAGGTTGGACTCAAACTCACGGAGATCCACTTaGCTCTGCCTCCTGAGTGCTGGGATTAAACTACCA +
Preference number: 3 (lower is better)
Translates to: WTRLDSNSRRST*LCLLSAGIKLP
Trigger: TGGTAGTTTAATCCCAGCACTCAGGAGGCAGAGGCAAGTGGATCTCCGTGAGTTTGAGTCCAACCTGGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR CAA 90 bp TACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACAGTTGGCTTGGCTTGGCTaGGCTCAGCTTTGCTTTTTG +
Preference number: 3 (lower is better)
Translates to: YTVAVLRHSRRGSQISLQLAWLG*AQLCFL
Trigger: CAAAAAGCAAAGCTGAGCCAAGCCAAGCCAAGCCAA...CTGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR CAA 90 bp AGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGGAAATTTTTCTCATTTCCCCAGCATATaGTTTCTTGACCTTTCTGGC +
Preference number: 3 (lower is better)
Translates to: SSRVLLPTEPSHQPGNFSHFPSI*FLDLSG
Trigger: GCCAGAAAGGTCAAGAAACAATATGCTGGGGAAATG...AGAAAAATTTCCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR CAA 90 bp AGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGGAAATTTTTCTGTCTCCCAGAAAAGTTaGCTCTGTTTGGCTCTAAAT +
Preference number: 3 (lower is better)
Translates to: SSRVLLPTEPSHQPGNFSVSQKS*LCLALN
Trigger: ATTTAGAGCCAAACAGAGCAAACTTTTCTGGGAGAC...AGAAAAATTTCCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR TCA 72 bp GCTCTTTCCTGCCTACCTCAAACAACCAGTCCTTCCTaGTACACACACACACATACACACACACACACAGAG +
Preference number: 3 (lower is better)
Translates to: ALSCLPQTTSPS*YTHTHTHTHTE
Trigger: CTCTGTGTGTGTGTGTGTATGTGTGTGTGTGTATCAGGAAGGACTGGTTGTTTGAGGTAGGCAGGAAAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR GCA 72 bp GAGAGAGAGAGAAAGGATATCTCAGTGCCAGCTAATTaGTCTGCTGTCTCTTCCTACTGTCTACATCCCCCA +
Preference number: 3 (lower is better)
Translates to: ERERKDISVPAN*SAVSSYCLHPP
Trigger: TGGGGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTCTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR CAA 90 bp AGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGGAAATTTTTCTATGAACTCTGGATTTTaGTTTGTTTGTGTCTCCCAG +
Preference number: 3 (lower is better)
Translates to: SSRVLLPTEPSHQPGNFSMNSGF*FVCVSQ
Trigger: CTGGGAGACACAAACAAACAAAAATCCAGAGTTCAT...AGAAAAATTTCCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR TCA 72 bp ACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTaGGTGTGGCTGATTGTACATGAAATGTTTTTGGTG +
Preference number: 3 (lower is better)
Translates to: TVYIPHTHICLP*VWLIVHEMFLV
Trigger: CACCAAAAACATTTCATGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
3UTR GCA 72 bp GACCCAGAAGCTTTTTACATGTGTGCAAGCTGTCTGTaGAGAATAAGTTCCTTAGGAATGAATCTCAGGGTA +
Preference number: 3 (lower is better)
Translates to: DPEAFYMCASCL*RISSLGMNLRV
Trigger: TACCCTGAGATTCATTCCTAAGGAACTTATTCTGCACAGACAGCTTGCACACATGTAAAAAGCTTCTGGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR-3UTR CAA 90 bp GCAAAGCAAAACTTCATCAAGTGCCACATGGTAGAGAACCTAGAGTCCAAAAGACCACTACCTGGCTCTTaGTCATTTGTTTGGAGTTTT +
Preference number: 3 (lower is better)
Translates to: AKQNFIKCHMVENLESKRPLPGS*SFVWSF
Trigger: AAAACTCCAAACAAATGACAAAGAGCCAGGTAGTGG...TCTTTTGGACTCTAGGTTCTCTACCATGTGGCACTTGATGAAGTTTTGCTTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR GCA 72 bp CCCTTCAACTCATCTGTATTGTGTTTACTACTGCTGTaGTTTCTGCTACTAGAAGCAAAACTCTATACGTCG +
Preference number: 3 (lower is better)
Translates to: PFNSSVLCLLLL*FLLLEAKLYTS
Trigger: CGACGTATAGAGTTTTGCTTCTAGTAGCAGAAAGCACAGCAGTAGTAAACACAATACAGATGAGTTGAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR TCA 72 bp TACAAGGGCGATCTCACTTTTTATGGCTTCGTGATATaGTGGTGTGTTGTGATTTTCTGTAAATTACTCCCT +
Preference number: 3 (lower is better)
Translates to: YKGDLTFYGFVI*WCVVIFCKLLP
Trigger: AGGGAGTAATTTACAGAAAATCACAACACACCATCATATCACGAAGCCATAAAAAGTGAGATCGCCCTTGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR TCA 72 bp CCCACAGGAATAGTATTAAGGCGGAGTCAAAGATTCTaGATAAATAAGTCATGTAGAAGGCAAAGATCAGAA +
Preference number: 3 (lower is better)
Translates to: PTGIVLRRSQRF*INKSCRRQRSE
Trigger: TTCTGATCTTTGCCTTCTACATGACTTATTTATTCAGAATCTTTGACTCCGCCTTAATACTATTCCTGTGGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CCA 90 bp CAGAAGCTGTCTTTCTCCCTGGGCACCGATGCCCCTGCTCCAGAGATTTTAAGGACCATCAAGGCTTCTTaGGGGACATTTGGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: QKLSFSLGTDAPAPEILRTIKAS*GTFGGG
Trigger: TCCTCCCCCAAATGTCCCCCAAGAAGCCTTGATGGT...CCTTAAAATCTCTGGAGCAGGGGCATCGGTGCCCAGGGAGAAAGACAGCTTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR CAA 72 bp ACCCTGGTTAGCCCGAAACTCACTATGTGGACCAGGTaGGACTCAAACTCACGGAGATCCACTTGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: TLVSPKLTMWTR*DSNSRRSTCLC
Trigger: GCAGAGGCAAGTGGATCTCCGTGAGTTTGAGTCCAACCTGGTCCACATAGTGAGTTTCGGGCTAACCAGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp TCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGCCCGTACTGTTGGTCTaGGAGCAGGGCCACAGTCTC +
Preference number: 4 (lower is better)
Translates to: SAVSSYCLHPPYSYLLALPVLLV*EQGHSL
Trigger: GAGACTGTGGCCCTGCTCTCAGACCAACAGTACGGG...CAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTGATTGTACACCCGTACTGTTGGTCTaGGAGCAGGGCCACAGTCTC +
Preference number: 4 (lower is better)
Translates to: CLHPPYSYLLALSVADCTPVLLV*EQGHSL
Trigger: GAGACTGTGGCCCTGCTCTCAGACCAACAGTACGGG...TGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR GCA 90 bp ACGGCCTTCGAAAGGCTGTTTGAACTGGGGAGCGCACAGAGAGCAGAGATATTTTCCATTTCCTCCCTTTaGCTAACCCCAAGGGTCGCT +
Preference number: 4 (lower is better)
Translates to: TAFERLFELGSAQRAEIFSISSL*LTPRVA
Trigger: AGCGACCCTTGGGGTTAGGCAAAGGGAGGAAATGGA...AAATATCTCTGCTCTCTGTGCGCTCCCCAGTTCAAACAGCCTTTCGAAGGCCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp CTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCCCATCTCTCGCTCTCTaGGTGATGGCTTTGGCCTTT +
Preference number: 4 (lower is better)
Translates to: LFLLSTSPILIFACPECGPSLAL*VMALAF
Trigger: AAAGGCCAAAGCCATCACTCAGAGAGCGAGAGATGG...GCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp TGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTAACGGCTTCTGGTGTTaGAGCTCAGGGAGGCCACTG +
Preference number: 4 (lower is better)
Translates to: CLFLLSTSPILIFACPECNGFWC*SSGRPL
Trigger: CAGTGGCCTCCCTGAGCTCCAACACCAGAAGCCGTT...ACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp GAGAGAGAAAGGATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTAACGGCTTCTGGTGTTaGAGCTCAGGGAGGCCACTG +
Preference number: 4 (lower is better)
Translates to: ERERISQCQLIALLSLPTNGFWC*SSGRPL
Trigger: CAGTGGCCTCCCTGAGCTCCAACACCAGAAGCCGTT...AGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp GATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTGTCTACATCCCGATGTGTCCTTGCCCTaGAAGCCAGACAGAGCAGAG +
Preference number: 4 (lower is better)
Translates to: DISVPANCSAVSSYCLHPDVSLP*KPDRAE
Trigger: CTCTGCTCTGTCTGGCTTCCAGGGCAAGGACACATC...GGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
3UTR CAA 72 bp CTACCTTCCAAACCACTGCACCCACACTTTGGCACTTaGACGGTAGTAACTCTGGGTCCCCACAGGAATAGT +
Preference number: 4 (lower is better)
Translates to: LPSKPLHPHFGT*TVVTLGPHRNS
Trigger: ACTATTCCTGTGGGGACCCAGAGTTACTACCGTCAAAGTGCCAAAGTGTGGGTGCAGTGGTTTGGAAGGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp CATGGTAGAGAACCTAGAGTCCAAAAGAGCAGAAGCTGTCTTTCTCCCTGGGCAACATCTTGCCTCCTCTaGAGACCTAGATCTACAGCC +
Preference number: 4 (lower is better)
Translates to: HGREPRVQKSRSCLSPWATSCLL*RPRSTA
Trigger: GGCTGTAGATCTAGGTCTTCAGAGGAGGCAAGATGT...TGCCCAGGGAGAAAGACAGCTTCTGCTCTTTTGGACTCTAGGTTCTCTACCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp GCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTTCTTCCCCACGATCATaGGAGCTAGAGTGGTCTTCC +
Preference number: 4 (lower is better)
Translates to: AVSSYCLHPPYSYLLALSSSPRS*ELEWSS
Trigger: GGAAGACCACTCTAGCTCTCATGATCGTGGGGAAGA...ACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGCCATCTCTCGCTCTCTaGGTGATGGCTTTGGCCTTT +
Preference number: 4 (lower is better)
Translates to: SAVSSYCLHPPYSYLLALPSLAL*VMALAF
Trigger: AAAGGCCAAAGCCATCACTCAGAGAGCGAGAGATGG...CAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR GCA 90 bp TACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACAGATACAGATGTGTCCTTaGCCTGGAAGCCAGACAGAG +
Preference number: 4 (lower is better)
Translates to: YTVAVLRHSRRGSQISLQIQMCP*PGSQTE
Trigger: CTCTGTCTGGCTTCCAGGGCAAGGACACATCTGTAT...CTGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CCA 90 bp CAGAAGCTGTCTTTCTCCCTGGGCACCGATGCCCCTGCTCCAGAGATTTTAAGGAGCATCTCGTCTAAATaGTTTCTGAACAATGGTGGC +
Preference number: 4 (lower is better)
Translates to: QKLSFSLGTDAPAPEILRSISSK*FLNNGG
Trigger: GCCACCATTGTTCAGAAACCATTTAGACGAGATGCT...CCTTAAAATCTCTGGAGCAGGGGCATCGGTGCCCAGGGAGAAAGACAGCTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CCA 90 bp CTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCGCACAGACATACCCATaGAGGGCCTCCTTATCATAC +
Preference number: 4 (lower is better)
Translates to: LFLLSTSPILIFACPECGAQTYP*RASLSY
Trigger: GTATGATAAGGAGGCCCTCCATGGGTATGTCTGTGC...GCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp GAGAGAGAAAGGATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTGATGTGTCCTTGCCCTaGAAGCCAGACAGAGCAGAG +
Preference number: 4 (lower is better)
Translates to: ERERISQCQLIALLSLPTDVSLP*KPDRAE
Trigger: CTCTGCTCTGTCTGGCTTCCAGGGCAAGGACACATC...AGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp CTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTGGAGCTGCGGGCTATaGAACAAATCAGAAGCTAAG +
Preference number: 4 (lower is better)
Translates to: LFLLSTSPILIFACPECGWSCGL*NKSEAK
Trigger: CTTAGCTTCTGATTTGTTTCATAGCCCGCAGCTCCA...GCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TACATTCTTCCTCTTCGGCCCTCTACCTTCCAAACCACTGCACCCACACTTTGGCCTTTTCACATCCAATaGCATGACGGGTCTCATCAT +
Preference number: 4 (lower is better)
Translates to: YILPLRPSTFQTTAPTLWPFHIQ*HDGSHH
Trigger: ATGATGAGACCCGTCATGTCATTGGATGTGAAAAGG...CCAAAGTGTGGGTGCAGTGGTTTGGAAGGTAGAGGGCCGAAGAGGAAGAATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp GATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTGTCTACATCCCTTCCAGGGGATCATCTaGGGGAAACTGGAAAGGTCT +
Preference number: 4 (lower is better)
Translates to: DISVPANCSAVSSYCLHPFQGII*GKLERS
Trigger: AGACCTTTCCAGTTTCCCTCAGATGATCCCCTGGAA...GGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGACATCTTGCCTCCTCTaGAGACCTAGATCTACAGCC +
Preference number: 4 (lower is better)
Translates to: SAVSSYCLHPPYSYLLALTSCLL*RPRSTA
Trigger: GGCTGTAGATCTAGGTCTTCAGAGGAGGCAAGATGT...CAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp GATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTGTCTACATCCCGAAGAGCGTCACAGATaGCATCTTGCCTCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: DISVPANCSAVSSYCLHPEERHR*HLASSE
Trigger: TTCAGAGGAGGCAAGATGTCATCTGTGACGCTCTTC...GGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp CTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCCTTGCTCAGGTTAGTTaGAAGCAACCCGTACTGTTG +
Preference number: 4 (lower is better)
Translates to: LFLLSTSPILIFACPECGLAQVS*KQPVLL
Trigger: CAACAGTACGGGTTGCTTTCAACTAACCTGAGCAAG...GCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp AGAGGGAGTCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGCTCTGCTACATAGACTaGCATCTGCTCCAAATTCAA +
Preference number: 4 (lower is better)
Translates to: RGSQISLQMVVSHHVVAGLCYID*HLLQIQ
Trigger: TTGAATTTGGAGCAGATGTCAGTCTATGTAGCAGAG...CCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGACTCCCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR GCA 90 bp GCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTATGTTCACCAGCTTCTaGTTCAGGGTACGGGCAACT +
Preference number: 4 (lower is better)
Translates to: AVSSYCLHPPYSYLLALSMFTSF*FRVRAT
Trigger: AGTTGCCCGTACCCTGAAGCAGAAGCTGGTGAACAT...ACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR GCA 90 bp GATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTGTCTACATCCCATGTTCACCAGCTTCTaGTTCAGGGTACGGGCAACT +
Preference number: 4 (lower is better)
Translates to: DISVPANCSAVSSYCLHPMFTSF*FRVRAT
Trigger: AGTTGCCCGTACCCTGAAGCAGAAGCTGGTGAACAT...GGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp AGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGGAAATTTTTCTGTTTCATGCAGTGTGTaGTATCCATTTCCTCCCTTT +
Preference number: 4 (lower is better)
Translates to: SSRVLLPTEPSHQPGNFSVSCSV*YPFPPF
Trigger: AAAGGGAGGAAATGGATACCACACACTGCATGAAAC...AGAAAAATTTCCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CCA 90 bp CTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCAGCCCCCTTCAGAATTaGCAAGTGCAGAAACACACT +
Preference number: 4 (lower is better)
Translates to: LFLLSTSPILIFACPECGSPLQN*QVQKHT
Trigger: AGTGTGTTTCTGCACTTGCCAATTCTGAAGGGGGCT...GCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp GCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGCACAGACATACCCATaGAGGGCCTCCTTATCATAC +
Preference number: 4 (lower is better)
Translates to: AVSSYCLHPPYSYLLALSAQTYP*RASLSY
Trigger: GTATGATAAGGAGGCCCTCCATGGGTATGTCTGTGC...ACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp TGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTACCATCAAGGCTTCTTaGGGGACATTTGGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: CLFLLSTSPILIFACPECTIKAS*GTFGGG
Trigger: TCCTCCCCCAAATGTCCCCCAAGAAGCCTTGATGGT...ACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp CTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCGTTGCCTGTGACATCTaGACCCCATTCAAGTTCTTC +
Preference number: 4 (lower is better)
Translates to: LFLLSTSPILIFACPECGVACDI*TPFKFF
Trigger: GAAGAACTTGAATGGGGTCCAGATGTCACAGGCAAC...GCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp ACGGCCTTCGAAAGGCTGTTTGAACTGGGGAGCGCACAGAGAGCAGAGATATTTGAGCATTGTAGAAAATaGCCGTCTCAGATCCCATTG +
Preference number: 4 (lower is better)
Translates to: TAFERLFELGSAQRAEIFEHCRK*PSQIPL
Trigger: CAATGGGATCTGAGACGGCCATTTTCTACAATGCTC...AAATATCTCTGCTCTCTGTGCGCTCCCCAGTTCAAACAGCCTTTCGAAGGCCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp GATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTGTCTACATCCCTGGAAAGGTCTGGGTTaGTTTCTATCATCCGAGAGG +
Preference number: 4 (lower is better)
Translates to: DISVPANCSAVSSYCLHPWKGLG*FLSSER
Trigger: CCTCTCGGATGATAGAAATCAACCCAGACCTTTCCA...GGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp GAGAGAGAAAGGATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTTTCCAGGGGATCATCTaGGGGAAACTGGAAAGGTCT +
Preference number: 4 (lower is better)
Translates to: ERERISQCQLIALLSLPTFQGII*GKLERS
Trigger: AGACCTTTCCAGTTTCCCTCAGATGATCCCCTGGAA...AGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp AGCTCTTTCCTGCCTACCTCAAACAACCAGTCCTTCCTGATACACACACACACACCTGCTGTGTGGTTATaGAGTTATAGGATTCGGGGT +
Preference number: 4 (lower is better)
Translates to: SSFLPTSNNQSFLIHTHTPAVWL*SYRIRG
Trigger: ACCCCGAATCCTATAACTTCATAACCACACAGCAGG...TGTGTGTGTGTGTATCAGGAAGGACTGGTTGTTTGAGGTAGGCAGGAAAGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp GATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTGTCTACATCCCCCTGCTGTGTGGTTATaGAGTTATAGGATTCGGGGT +
Preference number: 4 (lower is better)
Translates to: DISVPANCSAVSSYCLHPPAVWL*SYRIRG
Trigger: ACCCCGAATCCTATAACTTCATAACCACACAGCAGG...GGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGCTTGCTCAGGTTAGTTaGAAGCAACCCGTACTGTTG +
Preference number: 4 (lower is better)
Translates to: SAVSSYCLHPPYSYLLALLAQVS*KQPVLL
Trigger: CAACAGTACGGGTTGCTTTCAACTAACCTGAGCAAG...CAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGTCTCTAAGTTGCCTGTaGCATCTGGACCCCATTCAA +
Preference number: 4 (lower is better)
Translates to: SAVSSYCLHPPYSYLLALSLSCL*HLDPIQ
Trigger: TTGAATGGGGTCCAGATGTCACAGGCAACTTAGAGA...CAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp GAGAGAGAAAGGATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTATGCCTGAAAATCGGTaGACACTCTCCAACACGACG +
Preference number: 4 (lower is better)
Translates to: ERERISQCQLIALLSLPTMPENR*TLSNTT
Trigger: CGTCGTGTTGGAGAGTGTTCACCGATTTTCAGGCAT...AGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR GCA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATTCCATTTCCTCCCTTTaGCTAACCCCAAGGGTCGCT +
Preference number: 4 (lower is better)
Translates to: QRASKTARDQPKLTENWHSISSL*LTPRVA
Trigger: AGCGACCCTTGGGGTTAGGCAAAGGGAGGAAATGGA...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR GCA 90 bp GAGAGAGAAAGGATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTATACAGATGTGTCCTTaGCCTGGAAGCCAGACAGAG +
Preference number: 4 (lower is better)
Translates to: ERERISQCQLIALLSLPTIQMCP*PGSQTE
Trigger: CTCTGTCTGGCTTCCAGGGCAAGGACACATCTGTAT...AGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp CTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTCTTGCTGCAGGGTGTaGTGTTTAACATACTCTTCC +
Preference number: 4 (lower is better)
Translates to: LFLLSTSPILIFACPECGSCCRV*CLTYSS
Trigger: GGAAGAGTATGTTAAACACCACACCCTGCAGCAAGA...GCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp GCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTTACGGGCAACTTTCATaGAATAGTGCCTGTTCCCCA +
Preference number: 4 (lower is better)
Translates to: AVSSYCLHPPYSYLLALSYGQLS*NSACSP
Trigger: TGGGGAACAGGCACTATTCCATGAAAGTTGCCCGTA...ACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp AGCTCTTTCCTGCCTACCTCAAACAACCAGTCCTTCCTGATACACACACACACATATCCTGAAGGTAGCTaGTTATGTTGTCTCCGCTGC +
Preference number: 4 (lower is better)
Translates to: SSFLPTSNNQSFLIHTHTYPEGS*LCCLRC
Trigger: GCAGCGGAGACAACATAACCAGCTACCTTCAGGATA...TGTGTGTGTGTGTATCAGGAAGGACTGGTTGTTTGAGGTAGGCAGGAAAGAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CCA 90 bp TCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGTATCCTGAAGGTAGCTaGTTATGTTGTCTCCGCTGC +
Preference number: 4 (lower is better)
Translates to: SAVSSYCLHPPYSYLLALYPEGS*LCCLRC
Trigger: GCAGCGGAGACAACATAACCAGCTACCTTCAGGATA...CAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACAGCGTCTAAATGGTTTCTaGACAATGGTGGCAGATTCA +
Preference number: 4 (lower is better)
Translates to: YTVAVLRHSRRGSQISLQRLNGF*TMVADS
Trigger: TGAATCTGCCACCATTGTTCAGAAACCATTTAGACG...CTGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp TGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTTGGAGCTGCGGGCTATaGAACAAATCAGAAGCTAAG +
Preference number: 4 (lower is better)
Translates to: CLFLLSTSPILIFACPECWSCGL*NKSEAK
Trigger: CTTAGCTTCTGATTTGTTTCATAGCCCGCAGCTCCA...ACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGCCTTTTCACATCCAATaGCATGACGGGTCTCATCAT +
Preference number: 4 (lower is better)
Translates to: SAVSSYCLHPPYSYLLALPFHIQ*HDGSHH
Trigger: ATGATGAGACCCGTCATGTCATTGGATGTGAAAAGG...CAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTGATTGTACATGGAAAGGTCTGGGTTaGTTTCTATCATCCGAGAGG +
Preference number: 4 (lower is better)
Translates to: CLHPPYSYLLALSVADCTWKGLG*FLSSER
Trigger: CCTCTCGGATGATAGAAATCAACCCAGACCTTTCCA...TGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATGAAGAGCGTCACAGATaGCATCTTGCCTCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: QRASKTARDQPKLTENWHEERHR*HLASSE
Trigger: TTCAGAGGAGGCAAGATGTCATCTGTGACGCTCTTC...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGTAAGACCAAGGGAATaGTGCCTAATCTTCCAGGGT +
Preference number: 4 (lower is better)
Translates to: CLFLLSTSPILIFACPECVRPRE*CLIFQG
Trigger: ACCCTGGAAGATTAGGCATCATTCCCTTGGTCTTAC...ACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp CAAACATCCAAGCATATCATGGCCATTGCCAGGTCTTTCTCTCCAAACAGCATGTTCCTTACTCTTTGGTaGGAACCCAGTGGTAAGACC +
Preference number: 4 (lower is better)
Translates to: QTSKHIMAIARSFSPNSMFLTLW*EPSGKT
Trigger: GGTCTTACCACTGGGTTCTCACCAAAGAGTAAGGAA...CATGCTGTTTGGAGAGAAAGACCTGGCAATGGCCATGATATGCTTGGATGTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp TGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTGATTGTACATTCCTTACTCTTTGGTaGGAACCCAGTGGTAAGACC +
Preference number: 4 (lower is better)
Translates to: CLHPPYSYLLALSVADCTFLTLW*EPSGKT
Trigger: GGTCTTACCACTGGGTTCTCACCAAAGAGTAAGGAA...TGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TACATTCTTCCTCTTCGGCCCTCTACCTTCCAAACCACTGCACCCACACTTTGGCAAAGGTATTTTTCATaGAGGTTTTCCGTGTCACTG +
Preference number: 4 (lower is better)
Translates to: YILPLRPSTFQTTAPTLWQRYFS*RFSVSL
Trigger: CAGTGACACGGAAAACCTTCATGAAAAATACCTTTG...CCAAAGTGTGGGTGCAGTGGTTTGGAAGGTAGAGGGCCGAAGAGGAAGAATGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATATGCCTGAAAATCGGTaGACACTCTCCAACACGACG +
Preference number: 4 (lower is better)
Translates to: QRASKTARDQPKLTENWHMPENR*TLSNTT
Trigger: CGTCGTGTTGGAGAGTGTTCACCGATTTTCAGGCAT...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp GCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTACTTCTTTCCATGCCTaGAAATCGGTGAACACTCTC +
Preference number: 4 (lower is better)
Translates to: AVSSYCLHPPYSYLLALSTSFHA*KSVNTL
Trigger: GAGAGTGTTCACCGATTTTCAGGCATGGAAAGAAGT...ACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR GCA 90 bp TCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGCCAGATCCCACTTGTTaGAAATGGTGTACAGGATTG +
Preference number: 4 (lower is better)
Translates to: SAVSSYCLHPPYSYLLALPDPTC*KWCTGL
Trigger: CAATCCTGTACACCATTTGCAACAAGTGGGATCTGG...CAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp TGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTGATTGTACAAGCCCCCTTCAGAATTaGCAAGTGCAGAAACACACT +
Preference number: 4 (lower is better)
Translates to: CLHPPYSYLLALSVADCTSPLQN*QVQKHT
Trigger: AGTGTGTTTCTGCACTTGCCAATTCTGAAGGGGGCT...TGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp TCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGTCTTGCTGCAGGGTGTaGTGTTTAACATACTCTTCC +
Preference number: 4 (lower is better)
Translates to: SAVSSYCLHPPYSYLLALSCCRV*CLTYSS
Trigger: GGAAGAGTATGTTAAACACCACACCCTGCAGCAAGA...CAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp GATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTGTCTACATCCCGAGCATTGTAGAAAATaGCCGTCTCAGATCCCATTG +
Preference number: 4 (lower is better)
Translates to: DISVPANCSAVSSYCLHPEHCRK*PSQIPL
Trigger: CAATGGGATCTGAGACGGCCATTTTCTACAATGCTC...GGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp CATGGTAGAGAACCTAGAGTCCAAAAGAGCAGAAGCTGTCTTTCTCCCTGGGCAGGGGAGGATTTTCTCTaGTTTGATGCATTATATCCT +
Preference number: 4 (lower is better)
Translates to: HGREPRVQKSRSCLSPWAGEDFL*FDALYP
Trigger: AGGATATAATGCATCAAATCAGAGAAAATCCTCCCC...TGCCCAGGGAGAAAGACAGCTTCTGCTCTTTTGGACTCTAGGTTCTCTACCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp TGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTGATTGTACAACTTCTTTCCATGCCTaGAAATCGGTGAACACTCTC +
Preference number: 4 (lower is better)
Translates to: CLHPPYSYLLALSVADCTTSFHA*KSVNTL
Trigger: GAGAGTGTTCACCGATTTTCAGGCATGGAAAGAAGT...TGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp GCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTATGGTTTCTGAACAATaGTGGCAGATTCAAGCCAAC +
Preference number: 4 (lower is better)
Translates to: AVSSYCLHPPYSYLLALSMVSEQ*WQIQAN
Trigger: GTTGGCTTGAATCTGCCACCATTGTTCAGAAACCAT...ACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATGTTGCCTGTGACATCTaGACCCCATTCAAGTTCTTC +
Preference number: 4 (lower is better)
Translates to: QRASKTARDQPKLTENWHVACDI*TPFKFF
Trigger: GAAGAACTTGAATGGGGTCCAGATGTCACAGGCAAC...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp GCAAAGCAAAACTTCATCAAGTGCCACATGGTAGAGAACCTAGAGTCCAAAAGATCACATCCAATGACATaGCGGGTCTCATCATGCACA +
Preference number: 4 (lower is better)
Translates to: AKQNFIKCHMVENLESKRSHPMT*RVSSCT
Trigger: TGTGCATGATGAGACCCGTCATGTCATTGGATGTGA...TCTTTTGGACTCTAGGTTCTCTACCATGTGGCACTTGATGAAGTTTTGCTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp TGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTAAGATCAATATCCCTTaGGAGAAACAGCGCATTTCC +
Preference number: 4 (lower is better)
Translates to: CLFLLSTSPILIFACPECKINIP*EKQRIS
Trigger: GGAAATGCGCTGTTTCTCTCAAGGGATATTGATCTT...ACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp GAGAGAGAAAGGATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTAAGATCAATATCCCTTaGGAGAAACAGCGCATTTCC +
Preference number: 4 (lower is better)
Translates to: ERERISQCQLIALLSLPTKINIP*EKQRIS
Trigger: GGAAATGCGCTGTTTCTCTCAAGGGATATTGATCTT...AGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp TGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTGATTGTACAAGAATGTTGTCAGCTTaGCAGTTGAACACATTCCTG +
Preference number: 4 (lower is better)
Translates to: CLHPPYSYLLALSVADCTRMLSA*QLNTFL
Trigger: CAGGAATGTGTTCAACTGTCAAGCTGACAACATTCT...TGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp GCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTCAAAGGTATTTTTCATaGAGGTTTTCCGTGTCACTG +
Preference number: 4 (lower is better)
Translates to: AVSSYCLHPPYSYLLALSQRYFS*RFSVSL
Trigger: CAGTGACACGGAAAACCTTCATGAAAAATACCTTTG...ACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp GCAAAGCAAAACTTCATCAAGTGCCACATGGTAGAGAACCTAGAGTCCAAAAGATCTCTAAGTTGCCTGTaGCATCTGGACCCCATTCAA +
Preference number: 4 (lower is better)
Translates to: AKQNFIKCHMVENLESKRSLSCL*HLDPIQ
Trigger: TTGAATGGGGTCCAGATGTCACAGGCAACTTAGAGA...TCTTTTGGACTCTAGGTTCTCTACCATGTGGCACTTGATGAAGTTTTGCTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp TGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTCTCTGCTACATAGACTaGCATCTGCTCCAAATTCAA +
Preference number: 4 (lower is better)
Translates to: CLFLLSTSPILIFACPECLCYID*HLLQIQ
Trigger: TTGAATTTGGAGCAGATGTCAGTCTATGTAGCAGAG...ACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR GCA 90 bp TGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTGATTGTACAAACAGAGCTTCCACCTaGTGTGTGGTTATGAAGTTA +
Preference number: 4 (lower is better)
Translates to: CLHPPYSYLLALSVADCTNRAST*CVVMKL
Trigger: TAACTTCATAACCACACAGCAGGTGGAAGCTCTGTT...TGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp TGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTGATTGTACAGTTTCATGCAGTGTGTaGTATCCATTTCCTCCCTTT +
Preference number: 4 (lower is better)
Translates to: CLHPPYSYLLALSVADCTVSCSV*YPFPPF
Trigger: AAAGGGAGGAAATGGATACCACACACTGCATGAAAC...TGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp TGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTGATTGTACAAGAATCCTAGGATCCTaGACCCTTTTGAGGAATTTC +
Preference number: 4 (lower is better)
Translates to: CLHPPYSYLLALSVADCTRILGS*TLLRNF
Trigger: GAAATTCCTCAAAAGGGTCCAGGATCCTAGGATTCT...TGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp GCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTTCATATTGCACTTTGTaGTTTTGTCCACAGAAGTGG +
Preference number: 4 (lower is better)
Translates to: AVSSYCLHPPYSYLLALSSYCTL*FCPQKW
Trigger: CCACTTCTGTGGACAAAACCACAAAGTGCAATATGA...ACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATCGTCTAAATGGTTTCTaGACAATGGTGGCAGATTCA +
Preference number: 4 (lower is better)
Translates to: QRASKTARDQPKLTENWHRLNGF*TMVADS
Trigger: TGAATCTGCCACCATTGTTCAGAAACCATTTAGACG...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR TCA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATAGAATGTTGTCAGCTTaGCAGTTGAACACATTCCTG +
Preference number: 4 (lower is better)
Translates to: QRASKTARDQPKLTENWHRMLSA*QLNTFL
Trigger: CAGGAATGTGTTCAACTGTCAAGCTGACAACATTCT...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR GCA 90 bp GAGAGAGAAAGGATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTACAAACATCTCTCTGTaGTTGCTCAGGTTAGTTGAA +
Preference number: 4 (lower is better)
Translates to: ERERISQCQLIALLSLPTTNISL*LLRLVE
Trigger: TTCAACTAACCTGAGCAAGCACAGAGAGATGTTTGT...AGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATGAAACTGGAAAGGTCTaGGTTGATTTCTATCATCCG +
Preference number: 4 (lower is better)
Translates to: QRASKTARDQPKLTENWHETGKV*VDFYHP
Trigger: CGGATGATAGAAATCAACCCAGACCTTTCCAGTTTC...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
3UTR CAA 72 bp ATTTATGACATTTGCTGCCAGCATTTCCCCAGCATATaGTTTCTTGACCTTTCTGGCTATCCTGACACTCAC +
Preference number: 4 (lower is better)
Translates to: IYDICCQHFPSI*FLDLSGYPDTH
Trigger: GTGAGTGTCAGGATAGCCAGAAAGGTCAAGAAACAATATGCTGGGGAAATGCTGGCAGCAAATGTCATAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp TGGTGTGTTGTGATTTTCTGTAAATTACTCCCTTCAACTCATCTGTATTGTGTTTCTTCCCCACGATCATaGGAGCTAGAGTGGTCTTCC +
Preference number: 4 (lower is better)
Translates to: WCVVIFCKLLPSTHLYCVSSPRS*ELEWSS
Trigger: GGAAGACCACTCTAGCTCTCATGATCGTGGGGAAGA...AACACAATACAGATGAGTTGAAGGGAGTAATTTACAGAAAATCACAACACACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR TCA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATGGGGAGGATTTTCTCTaGTTTGATGCATTATATCCT +
Preference number: 4 (lower is better)
Translates to: QRASKTARDQPKLTENWHGEDFL*FDALYP
Trigger: AGGATATAATGCATCAAATCAGAGAAAATCCTCCCC...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR GCA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATCAATACTTCTTTCCATaGCTGAAAATCGGTGAACAC +
Preference number: 4 (lower is better)
Translates to: QRASKTARDQPKLTENWHQYFFP*LKIGEH
Trigger: GTGTTCACCGATTTTCAGGCATGGAAAGAAGTATTG...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CCA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATCTTGTAGACGCTCTCTaGAGTATATGTAATCCTGTT +
Preference number: 4 (lower is better)
Translates to: QRASKTARDQPKLTENWHLVDAL*SICNPV
Trigger: AACAGGATTACATATACTCCAGAGAGCGTCTACAAG...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR GCA 90 bp ACACCAAGATCAAGCATTTCTGCCGGTGGCTGTGTTAAAAACAAGGAAAATATCAACAGAGCTTCCACCTaGTGTGTGGTTATGAAGTTA +
Preference number: 4 (lower is better)
Translates to: TPRSSISAGGCVKNKENINRAST*CVVMKL
Trigger: TAACTTCATAACCACACAGCAGGTGGAAGCTCTGTT...GATATTTTCCTTGTTTTTAACACAGCCACCGGCAGAAATGCTTGATCTTGGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CCA 90 bp ACACCAAGATCAAGCATTTCTGCCGGTGGCTGTGTTAAAAACAAGGAAAATATCGAAACTGGAAAGGTCTaGGTTGATTTCTATCATCCG +
Preference number: 4 (lower is better)
Translates to: TPRSSISAGGCVKNKENIETGKV*VDFYHP
Trigger: CGGATGATAGAAATCAACCCAGACCTTTCCAGTTTC...GATATTTTCCTTGTTTTTAACACAGCCACCGGCAGAAATGCTTGATCTTGGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CCA 90 bp ACACCAAGATCAAGCATTTCTGCCGGTGGCTGTGTTAAAAACAAGGAAAATATCTCATATTGCACTTTGTaGTTTTGTCCACAGAAGTGG +
Preference number: 4 (lower is better)
Translates to: TPRSSISAGGCVKNKENISYCTL*FCPQKW
Trigger: CCACTTCTGTGGACAAAACCACAAAGTGCAATATGA...GATATTTTCCTTGTTTTTAACACAGCCACCGGCAGAAATGCTTGATCTTGGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CCA 90 bp ACACCAAGATCAAGCATTTCTGCCGGTGGCTGTGTTAAAAACAAGGAAAATATCCTTGTAGACGCTCTCTaGAGTATATGTAATCCTGTT +
Preference number: 4 (lower is better)
Translates to: TPRSSISAGGCVKNKENILVDAL*SICNPV
Trigger: AACAGGATTACATATACTCCAGAGAGCGTCTACAAG...GATATTTTCCTTGTTTTTAACACAGCCACCGGCAGAAATGCTTGATCTTGGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CCA 90 bp TGGTGTGTTGTGATTTTCTGTAAATTACTCCCTTCAACTCATCTGTATTGTGTTTACGGGCAACTTTCATaGAATAGTGCCTGTTCCCCA +
Preference number: 4 (lower is better)
Translates to: WCVVIFCKLLPSTHLYCVYGQLS*NSACSP
Trigger: TGGGGAACAGGCACTATTCCATGAAAGTTGCCCGTA...AACACAATACAGATGAGTTGAAGGGAGTAATTTACAGAAAATCACAACACACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
3UTR CAA 72 bp AGCTTGAACAGTGTGTCAGCACTTCTACATCCTACATaGTATAGTTTTCAAATTCCCCATTCACTACCCACT +
Preference number: 4 (lower is better)
Translates to: SLNSVSALLHPT*YSFQIPHSLPT
Trigger: AGTGGGTAGTGAATGGGGAATTTGAAAACTATACAATGTAGGATGTAGAAGTGCTGACACACTGTTCAAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CCA 90 bp TCTGTGCTCTTCCTGTCAAATTCTTTGTCCAGTTTTCCTTTAATCTTGGAAATTATGGTTTCTGAACAATaGTGGCAGATTCAAGCCAAC +
Preference number: 4 (lower is better)
Translates to: SVLFLSNSLSSFPLILEIMVSEQ*WQIQAN
Trigger: GTTGGCTTGAATCTGCCACCATTGTTCAGAAACCAT...AATTTCCAAGATTAAAGGAAAACTGGACAAAGAATTTGACAGGAAGAGCACAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CCA 90 bp TCTGTGCTCTTCCTGTCAAATTCTTTGTCCAGTTTTCCTTTAATCTTGGAAATTAGAATCCTAGGATCCTaGACCCTTTTGAGGAATTTC +
Preference number: 4 (lower is better)
Translates to: SVLFLSNSLSSFPLILEIRILGS*TLLRNF
Trigger: GAAATTCCTCAAAAGGGTCCAGGATCCTAGGATTCT...AATTTCCAAGATTAAAGGAAAACTGGACAAAGAATTTGACAGGAAGAGCACAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR GCA 90 bp TCTGTGCTCTTCCTGTCAAATTCTTTGTCCAGTTTTCCTTTAATCTTGGAAATTACAAACATCTCTCTGTaGTTGCTCAGGTTAGTTGAA +
Preference number: 4 (lower is better)
Translates to: SVLFLSNSLSSFPLILEITNISL*LLRLVE
Trigger: TTCAACTAACCTGAGCAAGCACAGAGAGATGTTTGT...AATTTCCAAGATTAAAGGAAAACTGGACAAAGAATTTGACAGGAAGAGCACAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CAA 90 bp CAGAAGCTGTCTTTCTCCCTGGGCACCGATGCCCCTGCTCCAGAGATTTTAAGGCATCTGTGGTACAAATaGGAGCACAGGGTAGCGAGC +
Preference number: 5 (lower is better)
Translates to: QKLSFSLGTDAPAPEILRHLWYK*EHRVAS
Trigger: GCTCGCTACCCTGTGCTCCAATTTGTACCACAGATG...CCTTAAAATCTCTGGAGCAGGGGCATCGGTGCCCAGGGAGAAAGACAGCTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CAA 90 bp GATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTGTCTACATCCCCAGGAATCGGGCGCTTaGGCAAATGCTGCACAGCAG +
Preference number: 5 (lower is better)
Translates to: DISVPANCSAVSSYCLHPQESGA*ANAAQQ
Trigger: CTGCTGTGCAGCATTTGCCAAAGCGCCCGATTCCTG...GGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS TCA 90 bp CCACATCTGTGGTACAAATTGGAGCACAGGGTAGCGAGCCTCACGTaGGAGGCTGCCACGTCCCACGAACTCACATATATTAAAAAGAGC +
Preference number: 5 (lower is better)
Translates to: PHLWYKLEHRVASLT*EAATSHELTYIKKS
Trigger: GCTCTTTTTAATATATGTGAGTTCGTGGGACGTGGCAGCCTCTCACGTGAGGCTCGCTACCCTGTGCTCCAATTTGTACCACAGATGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS TCA 90 bp TACTCTTCCAGGGGATCATCTGAGGGAAACTGGAAAGGTCTGGGTTaGTTTCTATCATCCGAGAGGCCCAGTCATTCGCAGTTAGCGGCT +
Preference number: 5 (lower is better)
Translates to: YSSRGSSEGNWKGLG*FLSSERPSHSQLAA
Trigger: AGCCGCTAACTGCGAATGACTGGGCCTCTCGGATGATAGAAATCAACCCAGACCTTTCCAGTTTCCCTCAGATGATCCCCTGGAAGAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS-3UTR CAA 90 bp TGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTCAGGAATCGGGCGCTTaGGCAAATGCTGCACAGCAG +
Preference number: 5 (lower is better)
Translates to: CLFLLSTSPILIFACPECQESGA*ANAAQQ
Trigger: CTGCTGTGCAGCATTTGCCAAAGCGCCCGATTCCTG...ACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp TGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTATCCATTTCCTCCCTTaGCCTAACCCCAAGGGTCGC +
Preference number: 5 (lower is better)
Translates to: CLFLLSTSPILIFACPECIHFLP*PNPKGR
Trigger: GCGACCCTTGGGGTTAGGCAAAGGGAGGAAATGGAT...ACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp GATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTGTCTACATCCCCATCTGTGGTACAAATaGGAGCACAGGGTAGCGAGC +
Preference number: 5 (lower is better)
Translates to: DISVPANCSAVSSYCLHPHLWYK*EHRVAS
Trigger: GCTCGCTACCCTGTGCTCCAATTTGTACCACAGATG...GGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATATCCATTTCCTCCCTTaGCCTAACCCCAAGGGTCGC +
Preference number: 5 (lower is better)
Translates to: QRASKTARDQPKLTENWHIHFLP*PNPKGR
Trigger: GCGACCCTTGGGGTTAGGCAAAGGGAGGAAATGGAT...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp CTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCGATGATCACAAGAGATaGCAACAGAGCTTCCACCTG +
Preference number: 5 (lower is better)
Translates to: LFLLSTSPILIFACPECGDDHKR*QQSFHL
Trigger: CAGGTGGAAGCTCTGTTGCAATCTCTTGTGATCATC...GCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS TCA 90 bp TTGCTGCAGGGTGTGGTGTTTAACATACTCTTCCAGGGGATCATCTaGGGGAAACTGGAAAGGTCTGGGTTGATTTCTATCATCCGAGAG +
Preference number: 5 (lower is better)
Translates to: LLQGVVFNILFQGII*GKLERSGLISIIRE
Trigger: CTCTCGGATGATAGAAATCAACCCAGACCTTTCCAGTTTCCCTCAGATGATCCCCTGGAAGAGTATGTTAAACACCACACCCTGCAGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS GCA 90 bp GGGCAACTTTCATGGAATAGTGCCTGTTCCCCAGATCCCACTTGTTaGAAATGGTGTACAGGATTGGAACGTTGTTCGGGGAAATCAGAA +
Preference number: 5 (lower is better)
Translates to: GQLSWNSACSPDPTC*KWCTGLERCSGKSE
Trigger: TTCTGATTTCCCCGAACAACGTTCCAATCCTGTACACCATTTGCAACAAGTGGGATCTGGGGAACAGGCACTATTCCATGAAAGTTGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp CTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCAGTGCAGAAACACACTaGGGAAGTCTCTCTCTAATG +
Preference number: 5 (lower is better)
Translates to: LFLLSTSPILIFACPECGSAETH*GSLSLM
Trigger: CATTAGAGAGAGACTTCCCAAGTGTGTTTCTGCACT...GCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp AGCTCTTTCCTGCCTACCTCAAACAACCAGTCCTTCCTGATACACACACACACATCAGTAATCTCTAAGTaGCCTGTGACATCTGGACCC +
Preference number: 5 (lower is better)
Translates to: SSFLPTSNNQSFLIHTHTSVISK*PVTSGP
Trigger: GGGTCCAGATGTCACAGGCAACTTAGAGATTACTGA...TGTGTGTGTGTGTATCAGGAAGGACTGGTTGTTTGAGGTAGGCAGGAAAGAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CAA 90 bp TCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGTCAGTAATCTCTAAGTaGCCTGTGACATCTGGACCC +
Preference number: 5 (lower is better)
Translates to: SAVSSYCLHPPYSYLLALSVISK*PVTSGP
Trigger: GGGTCCAGATGTCACAGGCAACTTAGAGATTACTGA...CAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS TCA 90 bp GCTTTGGCCTTTGCGTACCAGTTCCCGTCCTCCGTTCGGAAATTCTaGGCTTCGTCCACGATGATATGTTGCACATTATCAAAGGTATTT +
Preference number: 5 (lower is better)
Translates to: ALAFAYQFPSSVRKF*ASSTMICCTLSKVF
Trigger: AAATACCTTTGATAATGTGCAACATATCATCGTGGACGAAGCTCAGAATTTCCGAACGGAGGACGGGAACTGGTACGCAAAGGCCAAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp TCTGCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGGAGGACTTTGTGAAGTaGAGTTTTTCCAGGTACTGG +
Preference number: 5 (lower is better)
Translates to: SAVSSYCLHPPYSYLLALEDFVK*SFSRYW
Trigger: CCAGTACCTGGAAAAACTCAACTTCACAAAGTCCTC...CAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp TACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACAGAGCTCATATTGCACTTaGTGGTTTTGTCCACAGAAG +
Preference number: 5 (lower is better)
Translates to: YTVAVLRHSRRGSQISLQSSYCT*WFCPQK
Trigger: CTTCTGTGGACAAAACCACAAAGTGCAATATGAGCT...CTGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CAA 90 bp GAGAGAGAAAGGATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTCAGAATCGTTCGACCTaGATTGCACAGACATACCCA +
Preference number: 5 (lower is better)
Translates to: ERERISQCQLIALLSLPTQNRST*IAQTYP
Trigger: TGGGTATGTCTGTGCAATCAAGGTCGAACGATTCTG...AGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp CTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCAGCGGCTTCTTATTATaGTCCTTTATCTCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: LFLLSTSPILIFACPECGSGFLL*SFISQE
Trigger: TTCCTGGGAGATAAAGGACAATAATAAGAAGCCGCT...GCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp GCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTAACATCTCTCTGTGCTaGCTCAGGTTAGTTGAAAGC +
Preference number: 5 (lower is better)
Translates to: AVSSYCLHPPYSYLLALSNISLC*LRLVES
Trigger: GCTTTCAACTAACCTGAGCAAGCACAGAGAGATGTT...ACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS TCA 90 bp GAGGTCCTTGTAGACGCTCTCTGGAGTATATGTAATCCTGTTGGGTaGCACTGGAAAGTAATCCTTCTGCAGGTCTTCCACACATTTCAA +
Preference number: 5 (lower is better)
Translates to: EVLVDALWSICNPVG*HWKVILLQVFHTFQ
Trigger: TTGAAATGTGTGGAAGACCTGCAGAAGGATTACTTTCCAGTGTCACCCAACAGGATTACATATACTCCAGAGAGCGTCTACAAGGACCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS TCA 90 bp GATTCGGGGTACACTGGCATTTCTAAGTCATTCCTTACTCTTTGGTaGGAACCCAGTGGTAAGACCAAGGGAATGATGCCTAATCTTCCA +
Preference number: 5 (lower is better)
Translates to: DSGYTGISKSFLTLW*EPSGKTKGMMPNLP
Trigger: TGGAAGATTAGGCATCATTCCCTTGGTCTTACCACTGGGTTCTCACCAAAGAGTAAGGAATGACTTAGAAATGCCAGTGTACCCCGAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp GAGAGAGAAAGGATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTAGTGCAGAAACACACTaGGGAAGTCTCTCTCTAATG +
Preference number: 5 (lower is better)
Translates to: ERERISQCQLIALLSLPTSAETH*GSLSLM
Trigger: CATTAGAGAGAGACTTCCCAAGTGTGTTTCTGCACT...AGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp GATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTGTCTACATCCCAGCTCATATTGCACTTaGTGGTTTTGTCCACAGAAG +
Preference number: 5 (lower is better)
Translates to: DISVPANCSAVSSYCLHPSSYCT*WFCPQK
Trigger: CTTCTGTGGACAAAACCACAAAGTGCAATATGAGCT...GGGATGTAGACAGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATCTGGAAAGGTCTGGGTaGATTTCTATCATCCGAGAG +
Preference number: 5 (lower is better)
Translates to: QRASKTARDQPKLTENWHLERSG*ISIIRE
Trigger: CTCTCGGATGATAGAAATCAACCCAGACCTTTCCAG...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp GCTGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGAAGATCAATATCCCTaGAGAGAAACAGCGCATTTC +
Preference number: 5 (lower is better)
Translates to: AVSSYCLHPPYSYLLALSEDQYP*RETAHF
Trigger: GAAATGCGCTGTTTCTCTCAAGGGATATTGATCTTC...ACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATGATGATCACAAGAGATaGCAACAGAGCTTCCACCTG +
Preference number: 5 (lower is better)
Translates to: QRASKTARDQPKLTENWHDDHKR*QQSFHL
Trigger: CAGGTGGAAGCTCTGTTGCAATCTCTTGTGATCATC...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp CTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCAAGAATGTTGTCAGCTaGACAGTTGAACACATTCCT +
Preference number: 5 (lower is better)
Translates to: LFLLSTSPILIFACPECGKNVVS*TVEHIP
Trigger: AGGAATGTGTTCAACTGTCAAGCTGACAACATTCTT...GCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp GAGAGAGAAAGGATATCTCAGTGCCAGCTAATTGCTCTGCTGTCTCTTCCTACTCGCTTTTCCTCCATCTaGTATACATTCCGCAAAGTT +
Preference number: 5 (lower is better)
Translates to: ERERISQCQLIALLSLPTRFSSI*YTFRKV
Trigger: AACTTTGCGGAATGTATACAAGATGGAGGAAAAGCG...AGTAGGAAGAGACAGCAGAGCAATTAGCTGGCACTGAGATATCCTTTCTCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp CAAAGAGCTTCAAAGACAGCTAGAGACCAACCCAAGCTAACTGAAAACTGGCATAGCGGCTTCTTATTATaGTCCTTTATCTCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: QRASKTARDQPKLTENWHSGFLL*SFISQE
Trigger: TTCCTGGGAGATAAAGGACAATAATAAGAAGCCGCT...ATGCCAGTTTTCAGTTAGCTTGGGTTGGTCTCTAGCTGTCTTTGAAGCTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS-3UTR CAA 90 bp ACACCAAGATCAAGCATTTCTGCCGGTGGCTGTGTTAAAAACAAGGAAAATATCCTGGAAAGGTCTGGGTaGATTTCTATCATCCGAGAG +
Preference number: 5 (lower is better)
Translates to: TPRSSISAGGCVKNKENILERSG*ISIIRE
Trigger: CTCTCGGATGATAGAAATCAACCCAGACCTTTCCAG...GATATTTTCCTTGTTTTTAACACAGCCACCGGCAGAAATGCTTGATCTTGGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CAA 90 bp TGTCTCTTCCTACTGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTAAGAATGTTGTCAGCTaGACAGTTGAACACATTCCT +
Preference number: 5 (lower is better)
Translates to: CLFLLSTSPILIFACPECKNVVS*TVEHIP
Trigger: AGGAATGTGTTCAACTGTCAAGCTGACAACATTCTT...ACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACAGTAGGAAGAGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS TCA 90 bp AGTAATCCTTCTGCAGGTCTTCCACACATTTCAAATATTTATGTGTaGACACGGTCTTGCTGCAGGGTGTGGTGTTTAACATACTCTTCC +
Preference number: 5 (lower is better)
Translates to: SNPSAGLPHISNIYV*TRSCCRVWCLTYSS
Trigger: GGAAGAGTATGTTAAACACCACACCCTGCAGCAAGACCGTGTTCACACATAAATATTTGAAATGTGTGGAAGACCTGCAGAAGGATTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS-3UTR CAA 90 bp TGTCTACATCCCCCATACTCATATTTGCTTGCCCTGAGTGTGGCTGATTGTACAGTCCACGATGATATGTaGCACATTATCAAAGGTATT +
Preference number: 5 (lower is better)
Translates to: CLHPPYSYLLALSVADCTVHDDM*HIIKGI
Trigger: AATACCTTTGATAATGTGCAACATATCATCGTGGAC...TGTACAATCAGCCACACTCAGGGCAAGCAAATATGAGTATGGGGGATGTAGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS CCA 90 bp CTCACATATATTAAAAAGAGCTTTCCATACAGCATCTCGTCTAAATaGTTTCTGAACAATGGTGGCAGATTCAAGCCAACTCCATCCCTC +
Preference number: 5 (lower is better)
Translates to: LTYIKKSFPYSISSK*FLNNGGRFKPTPSL
Trigger: GAGGGATGGAGTTGGCTTGAATCTGCCACCATTGTTCAGAAACCATTTAGACGAGATGCTGTATGGAAAGCTCTTTTTAATATATGTGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS-3UTR CAA 90 bp TCTGTGCTCTTCCTGTCAAATTCTTTGTCCAGTTTTCCTTTAATCTTGGAAATTCAGAATCGTTCGACCTaGATTGCACAGACATACCCA +
Preference number: 5 (lower is better)
Translates to: SVLFLSNSLSSFPLILEIQNRST*IAQTYP
Trigger: TGGGTATGTCTGTGCAATCAAGGTCGAACGATTCTG...AATTTCCAAGATTAAAGGAAAACTGGACAAAGAATTTGACAGGAAGAGCACAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CAA 90 bp TGGTGTGTTGTGATTTTCTGTAAATTACTCCCTTCAACTCATCTGTATTGTGTTGAGGACTTTGTGAAGTaGAGTTTTTCCAGGTACTGG +
Preference number: 5 (lower is better)
Translates to: WCVVIFCKLLPSTHLYCVEDFVK*SFSRYW
Trigger: CCAGTACCTGGAAAAACTCAACTTCACAAAGTCCTC...AACACAATACAGATGAGTTGAAGGGAGTAATTTACAGAAAATCACAACACACCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS-3UTR CAA 90 bp TCTGTGCTCTTCCTGTCAAATTCTTTGTCCAGTTTTCCTTTAATCTTGGAAATTAACATCTCTCTGTGCTaGCTCAGGTTAGTTGAAAGC +
Preference number: 5 (lower is better)
Translates to: SVLFLSNSLSSFPLILEINISLC*LRLVES
Trigger: GCTTTCAACTAACCTGAGCAAGCACAGAGAGATGTT...AATTTCCAAGATTAAAGGAAAACTGGACAAAGAATTTGACAGGAAGAGCACAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067443.10
CDS TCA 72 bp TGGTACAAATTGGAGCACAGGGTAGCGAGCCTCACGTaGGAGGCTGCCACGTCCCACGAACTCACATATATT +
Preference number: 6 (lower is better)
Translates to: WYKLEHRVASLT*EAATSHELTYI
Trigger: AATATATGTGAGTTCGTGGGACGTGGCAGCCTCTCACGTGAGGCTCGCTACCCTGTGCTCCAATTTGTACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS TCA 72 bp AGGGGATCATCTGAGGGAAACTGGAAAGGTCTGGGTTaGTTTCTATCATCCGAGAGGCCCAGTCATTCGCAG +
Preference number: 6 (lower is better)
Translates to: RGSSEGNWKGLG*FLSSERPSHSQ
Trigger: CTGCGAATGACTGGGCCTCTCGGATGATAGAAATCAACCCAGACCTTTCCAGTTTCCCTCAGATGATCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS GCA 72 bp CTTTATCTCCCAGGAATCGGGCGCTTTGGCAAATGCTaGACAGCAGAATCGTTCGACCTTGATTGCACAGAC +
Preference number: 6 (lower is better)
Translates to: LYLPGIGRFGKC*TAESFDLDCTD
Trigger: GTCTGTGCAATCAAGGTCGAACGATTCTGCTGTGCAGCATTTGCCAAAGCGCCCGATTCCTGGGAGATAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS CAA 72 bp GAGGCCCAGTCATTCGCAGTTAGCGGCTTCTTATTATaGTCCTTTATCTCCCAGGAATCGGGCGCTTTGGCA +
Preference number: 6 (lower is better)
Translates to: EAQSFAVSGFLL*SFISQESGALA
Trigger: TGCCAAAGCGCCCGATTCCTGGGAGATAAAGGACAATAATAAGAAGCCGCTAACTGCGAATGACTGGGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS TCA 72 bp CTCTTTGGTGAGAACCCAGTGGTAAGACCAAGGGAATaGTGCCTAATCTTCCAGGGTAGCCACCCATGTTCA +
Preference number: 6 (lower is better)
Translates to: LFGENPVVRPRE*CLIFQGSHPCS
Trigger: TGAACATGGGTGGCTACCCTGGAAGATTAGGCATCATTCCCTTGGTCTTACCACTGGGTTCTCACCAAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS GCA 72 bp TCATGGAATAGTGCCTGTTCCCCAGATCCCACTTGTTaGAAATGGTGTACAGGATTGGAACGTTGTTCGGGG +
Preference number: 6 (lower is better)
Translates to: SWNSACSPDPTC*KWCTGLERCSG
Trigger: CCCCGAACAACGTTCCAATCCTGTACACCATTTGCAACAAGTGGGATCTGGGGAACAGGCACTATTCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS CCA 72 bp TCAGGATCCATGACCTCAGTAAATGTTCCACATCTGTaGTACAAATTGGAGCACAGGGTAGCGAGCCTCACG +
Preference number: 6 (lower is better)
Translates to: SGSMTSVNVPHL*YKLEHRVASLT
Trigger: CGTGAGGCTCGCTACCCTGTGCTCCAATTTGTACCACAGATGTGGAACATTTACTGAGGTCATGGATCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS CCA 72 bp CTTCCAGGGGATCATCTGAGGGAAACTGGAAAGGTCTaGGTTGATTTCTATCATCCGAGAGGCCCAGTCATT +
Preference number: 6 (lower is better)
Translates to: LPGDHLRETGKV*VDFYHPRGPVI
Trigger: AATGACTGGGCCTCTCGGATGATAGAAATCAACCCAGACCTTTCCAGTTTCCCTCAGATGATCCCCTGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS CAA 90 bp GTAAACTGGGCTCCTCAGCGAGCTGAGACATGGACCTCCTCCTCATaGCTAGCAGAAGCTTGTCTCTACATTTTTCTATATCTCTGGCTC +
Preference number: 6 (lower is better)
Translates to: VNWAPQRAETWTSSS*LAEACLYIFLYLWL
Trigger: GAGCCAGAGATATAGAAAAATGTAGAGACAAGCTTCTGCTAGCAATGAGGAGGAGGTCCATGTCTCAGCTCGCTGAGGAGCCCAGTTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS CAA 90 bp CATTTCCTCCCTTTGCCTAACCCCAAGGGTCGCTTTTCCTCCATCTaGTATACATTCCGCAAAGTTCAGTTCCAAATCCTCCAGGAAACT +
Preference number: 6 (lower is better)
Translates to: HFLPLPNPKGRFSSI*YTFRKVQFQILQET
Trigger: AGTTTCCTGGAGGATTTGGAACTGAACTTTGCGGAATGTATACAAGATGGAGGAAAAGCGACCCTTGGGGTTAGGCAAAGGGAGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS TCA 72 bp GTAGACGCTCTCTGGAGTATATGTAATCCTGTTGGGTaGCACTGGAAAGTAATCCTTCTGCAGGTCTTCCAC +
Preference number: 6 (lower is better)
Translates to: VDALWSICNPVG*HWKVILLQVFH
Trigger: GTGGAAGACCTGCAGAAGGATTACTTTCCAGTGTCACCCAACAGGATTACATATACTCCAGAGAGCGTCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS TCA 72 bp TTTGCGTACCAGTTCCCGTCCTCCGTTCGGAAATTCTaGGCTTCGTCCACGATGATATGTTGCACATTATCA +
Preference number: 6 (lower is better)
Translates to: FAYQFPSSVRKF*ASSTMICCTLS
Trigger: TGATAATGTGCAACATATCATCGTGGACGAAGCTCAGAATTTCCGAACGGAGGACGGGAACTGGTACGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS GCA 72 bp AGGGGTCTGAACCCAAACAAGATGATCACAAGAGATTaGAACAGAGCTTCCACCTGCTGTGTGGTTATGAAG +
Preference number: 6 (lower is better)
Translates to: RGLNPNKMITRD*NRASTCCVVMK
Trigger: CTTCATAACCACACAGCAGGTGGAAGCTCTGTTGCAATCTCTTGTGATCATCTTGTTTGGGTTCAGACCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS CCA 72 bp AATAGTGCCTGTTCCCCAGATCCCACTTGTTGCAAATaGTGTACAGGATTGGAACGTTGTTCGGGGAAATCA +
Preference number: 6 (lower is better)
Translates to: NSACSPDPTCCK*CTGLERCSGKS
Trigger: TGATTTCCCCGAACAACGTTCCAATCCTGTACACCATTTGCAACAAGTGGGATCTGGGGAACAGGCACTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS CAA 72 bp TCAGAGTCACCAAGAATCCTAGGATCCTGGACCCTTTaGAGGAATTTCAGGGCTTTTTCAGGATCCATGACC +
Preference number: 6 (lower is better)
Translates to: SESPRILGSWTL*RNFRAFSGSMT
Trigger: GGTCATGGATCCTGAAAAAGCCCTGAAATTCCTCAAAAGGGTCCAGGATCCTAGGATTCTTGGTGACTCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS CAA 72 bp CAGGGGTCTGAACCCAAACAAGATGATCACAAGAGATaGCAACAGAGCTTCCACCTGCTGTGTGGTTATGAA +
Preference number: 6 (lower is better)
Translates to: QGSEPKQDDHKR*QQSFHLLCGYE
Trigger: TTCATAACCACACAGCAGGTGGAAGCTCTGTTGCAATCTCTTGTGATCATCTTGTTTGGGTTCAGACCCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS CAA 72 bp GCTCCTCAGCGAGCTGAGACATGGACCTCCTCCTCATaGCTAGCAGAAGCTTGTCTCTACATTTTTCTATAT +
Preference number: 6 (lower is better)
Translates to: APQRAETWTSSS*LAEACLYIFLY
Trigger: ATATAGAAAAATGTAGAGACAAGCTTCTGCTAGCAATGAGGAGGAGGTCCATGTCTCAGCTCGCTGAGGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS TCA 72 bp GGTGTGGTGTTTAACATACTCTTCCAGGGGATCATCTaGGGGAAACTGGAAAGGTCTGGGTTGATTTCTATC +
Preference number: 6 (lower is better)
Translates to: GVVFNILFQGII*GKLERSGLISI
Trigger: GATAGAAATCAACCCAGACCTTTCCAGTTTCCCTCAGATGATCCCCTGGAAGAGTATGTTAAACACCACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS TCA 72 bp GAGATTGCAACAGAGCTTCCACCTGCTGTGTGGTTATaGAGTTATAGGATTCGGGGTACACTGGCATTTCTA +
Preference number: 6 (lower is better)
Translates to: EIATELPPAVWL*SYRIRGTLAFL
Trigger: TAGAAATGCCAGTGTACCCCGAATCCTATAACTTCATAACCACACAGCAGGTGGAAGCTCTGTTGCAATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS TCA 72 bp TCCGTGTCACTGCCTGGCAAACGTTTTTCCTCACAATaGACCTCTTCAAGGACTGGTTCTCACAGATGTAAA +
Preference number: 6 (lower is better)
Translates to: SVSLPGKRFSSQ*TSSRTGSHRCK
Trigger: TTTACATCTGTGAGAACCAGTCCTTGAAGAGGTTCATTGTGAGGAAAAACGTTTGCCAGGCAGTGACACGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS CCA 72 bp TTTAGCGAGTCAGAGTCACCAAGAATCCTAGGATCCTaGACCCTTTTGAGGAATTTCAGGGCTTTTTCAGGA +
Preference number: 6 (lower is better)
Translates to: FSESESPRILGS*TLLRNFRAFSG
Trigger: TCCTGAAAAAGCCCTGAAATTCCTCAAAAGGGTCCAGGATCCTAGGATTCTTGGTGACTCTGACTCGCTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS CAA 90 bp TGCAGGTCTTCCACACATTTCAAATATTTATGTGTGAACACGGTCTaGCTGCAGGGTGTGGTGTTTAACATACTCTTCCAGGGGATCATC +
Preference number: 6 (lower is better)
Translates to: CRSSTHFKYLCVNTV*LQGVVFNILFQGII
Trigger: GATGATCCCCTGGAAGAGTATGTTAAACACCACACCCTGCAGCAAGACCGTGTTCACACATAAATATTTGAAATGTGTGGAAGACCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS TCA 72 bp TCTGCAGGTCTTCCACACATTTCAAATATTTATGTGTaGACACGGTCTTGCTGCAGGGTGTGGTGTTTAACA +
Preference number: 6 (lower is better)
Translates to: SAGLPHISNIYV*TRSCCRVWCLT
Trigger: TGTTAAACACCACACCCTGCAGCAAGACCGTGTTCACACATAAATATTTGAAATGTGTGGAAGACCTGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS CAA 90 bp ATGGAGGGCCTCCTTATCATACACTTCAAGGAATTTAAGCTCATATaGCACTTTGTGGTTTTGTCCACAGAAGTGGTAGACAGGCATCTT +
Preference number: 6 (lower is better)
Translates to: MEGLLIIHFKEFKLI*HFVVLSTEVVDRHL
Trigger: AAGATGCCTGTCTACCACTTCTGTGGACAAAACCACAAAGTGCAATATGAGCTTAAATTCCTTGAAGTGTATGATAAGGAGGCCCTCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS TCA 72 bp CCTCCAAAGACTCTGGCATTTCTCTGCTACATAGACTaGCATCTGCTCCAAATTCAAGTTATCAGTAATCTC +
Preference number: 6 (lower is better)
Translates to: PPKTLAFLCYID*HLLQIQVISNL
Trigger: GAGATTACTGATAACTTGAATTTGGAGCAGATGTCAGTCTATGTAGCAGAGAAATGCCAGAGTCTTTGGAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS TCA 72 bp CATTGTAGAAAATGGCCGTCTCAGATCCCATTGGAATaGTCCCAAACACAATACTTCTTTCCATGCCTGAAA +
Preference number: 6 (lower is better)
Translates to: HCRKWPSQIPLE*SQTQYFFPCLK
Trigger: TTTCAGGCATGGAAAGAAGTATTGTGTTTGGGATCATTCCAATGGGATCTGAGACGGCCATTTTCTACAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
CDS CAA 90 bp ATCATACACTTCAAGGAATTTAAGCTCATATTGCACTTTGTGGTTTaGTCCACAGAAGTGGTAGACAGGCATCTTCCTGATACAGGCATC +
Preference number: 6 (lower is better)
Translates to: IIHFKEFKLILHFVV*STEVVDRHLPDTGI
Trigger: GATGCCTGTATCAGGAAGATGCCTGTCTACCACTTCTGTGGACAAAACCACAAAGTGCAATATGAGCTTAAATTCCTTGAAGTGTATGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2
ENSMUST00000108158.9
CDS CAA 72 bp ATCTGCTCCAAATTCAAGTTATCAGTAATCTCTAAGTaGCCTGTGACATCTGGACCCCATTCAAGTTCTTCA +
Preference number: 6 (lower is better)
Translates to: ICSKFKLSVISK*PVTSGPHSSSS
Trigger: TGAAGAACTTGAATGGGGTCCAGATGTCACAGGCAACTTAGAGATTACTGATAACTTGAATTTGGAGCAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067443.10
ENSMUST00000108157.2