Pregenerated sensors for SLF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021597Ensembl transcript IDs: ENSMUST00000151524.9, ENSMUST00000159300.8, ENSMUST00000159462.3, ENSMUST00000162921.8, ENSMUST00000162944.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GTTTGTCCACTTGCAAGTGTGTTTACAGTAGCAAAAACGAAATCAAAACAACATCAAGAGAATATTCACTaGACACTGCAGAACTGTTTG | + |
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Preference number: 2 (lower is better) Translates to: VCPLASVFTVAKTKSKQHQENIH*TLQNCL Trigger: CAAACAGTTCTGCAGTGTGCAGTGAATATTCTCTTG...ATGTTGTTTTGATTTCGTTTTTGCTACTGTAAACACACTTGCAAGTGGACAAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| 3UTR-3UTR CAA 90 bp | GAAACCCCTCAACATTTGTACCAAGAGTCACACAAGAGAATATTCACTGCACACATGTGTTATACCACTTaGATACATGTGCTTTGCAAG | + |
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Preference number: 3 (lower is better) Translates to: ETPQHLYQESHKRIFTAHMCYTT*IHVLCK Trigger: CTTGCAAAGCACATGTATCAAAGTGGTATAACACAT...GTGTGCAGTGAATATTCTCTTGTGTGACTCTTGGTACAAATGTTGAGGGGTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| 3UTR GCA 72 bp | AGCTCTGCTCTATGCAACAGGCATAGTTTGTCCACTTaGAAGTGTGTTTACAGTAGCAAAAACGAAATCAAA | + |
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Preference number: 3 (lower is better) Translates to: SSALCNRHSLST*KCVYSSKNEIK Trigger: TTTGATTTCGTTTTTGCTACTGTAAACACACTTGCAAGTGGACAAACTATGCCTGTTGCATAGAGCAGAGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| CDS-3UTR GCA 90 bp | GAAACCCCTCAACATTTGTACCAAGAGTCACACAAGAGAATATTCACTGCACACGTCACTCCGCTTATCTaGCCTAACAAGGAGAACAAC | + |
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Preference number: 4 (lower is better) Translates to: ETPQHLYQESHKRIFTAHVTPLI*PNKENN Trigger: GTTGTTCTCCTTGTTAGGGCAGATAAGCGGAGTGAC...GTGTGCAGTGAATATTCTCTTGTGTGACTCTTGGTACAAATGTTGAGGGGTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| CDS-3UTR TCA 90 bp | GTACCAAGAGTCACACAAGAGAATATTCACTGCACACTGCAGAACTGTTTGATATGGTCCAAGCAGGACTaGTTTGGGAATGTTCATCAT | + |
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Preference number: 4 (lower is better) Translates to: VPRVTQENIHCTLQNCLIWSKQD*FGNVHH Trigger: ATGATGAACATTCCCAAATCAGTCCTGCTTGGACCA...TATCAAACAGTTCTGCAGTGTGCAGTGAATATTCTCTTGTGTGACTCTTGGTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| 3UTR CAA 72 bp | AATCAACAGAGCTCTGCTCTATGCAACAGGCATAGTTaGTCCACTTGCAAGTGTGTTTACAGTAGCAAAAAC | + |
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Preference number: 4 (lower is better) Translates to: NQQSSALCNRHS*STCKCVYSSKN Trigger: GTTTTTGCTACTGTAAACACACTTGCAAGTGGACAAACTATGCCTGTTGCATAGAGCAGAGCTCTGTTGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| CDS-3UTR TCA 90 bp | GAAACCCCTCAACATTTGTACCAAGAGTCACACAAGAGAATATTCACTGCACACAGATTGCATTTGAGGTaGATAATGGGAGTCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: ETPQHLYQESHKRIFTAHRLHLR*IMGVFF Trigger: GAAAAAGACTCCCATTATTCACCTCAAATGCAATCT...GTGTGCAGTGAATATTCTCTTGTGTGACTCTTGGTACAAATGTTGAGGGGTTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| CDS-3UTR GCA 90 bp | AGATTCATATTTGTCTTGACATCCTTGGTCTTTGATTCTTTGGTACCATCAGTAGTCACTCCGCTTATCTaGCCTAACAAGGAGAACAAC | + |
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Preference number: 4 (lower is better) Translates to: RFIFVLTSLVFDSLVPSVVTPLI*PNKENN Trigger: GTTGTTCTCCTTGTTAGGGCAGATAAGCGGAGTGAC...TACTGATGGTACCAAAGAATCAAAGACCAAGGATGTCAAGACAAATATGAATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162921.8 |
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| 3UTR CAA 72 bp | AGGAATACATTCTCAGCCAAAGAAACCCCTCAACATTaGTACCAAGAGTCACACAAGAGAATATTCACTGCA | + |
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Preference number: 4 (lower is better) Translates to: RNTFSAKETPQH*YQESHKRIFTA Trigger: TGCAGTGAATATTCTCTTGTGTGACTCTTGGTACAAATGTTGAGGGGTTTCTTTGGCTGAGAATGTATTCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| CDS-3UTR TCA 90 bp | AGATTCATATTTGTCTTGACATCCTTGGTCTTTGATTCTTTGGTACCATCAGTATGGTCCAAGCAGGACTaGTTTGGGAATGTTCATCAT | + |
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Preference number: 4 (lower is better) Translates to: RFIFVLTSLVFDSLVPSVWSKQD*FGNVHH Trigger: ATGATGAACATTCCCAAATCAGTCCTGCTTGGACCA...TACTGATGGTACCAAAGAATCAAAGACCAAGGATGTCAAGACAAATATGAATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162921.8 |
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| CDS-3UTR GCA 90 bp | AATCAAAACAACATAAACATTTGGCAAACCAGCCAAGCATCATGGAGAACAAGTTTTCATCAAGCCATCTaGCACTTTTGGCACTGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: NQNNINIWQTSQASWRTSFHQAI*HFWHCE Trigger: TTCACAGTGCCAAAAGTGGCAGATGGCTTGATGAAA...ACTTGTTCTCCATGATGCTTGGCTGGTTTGCCAAATGTTTATGTTGTTTTGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| CDS-3UTR GCA 90 bp | AGATTCATATTTGTCTTGACATCCTTGGTCTTTGATTCTTTGGTACCATCAGTATTTCATCAAGCCATCTaGCACTTTTGGCACTGTGAA | + |
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Preference number: 4 (lower is better) Translates to: RFIFVLTSLVFDSLVPSVFHQAI*HFWHCE Trigger: TTCACAGTGCCAAAAGTGGCAGATGGCTTGATGAAA...TACTGATGGTACCAAAGAATCAAAGACCAAGGATGTCAAGACAAATATGAATCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162921.8 |
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| CDS-3UTR CCA 90 bp | AATCAAAACAACATAAACATTTGGCAAACCAGCCAAGCATCATGGAGAACAAGTGCCATCTGCCACTTTTaGCACTGTGAATTATGTAAT | + |
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Preference number: 4 (lower is better) Translates to: NQNNINIWQTSQASWRTSAICHF*HCELCN Trigger: ATTACATAATTCACAGTGCCAAAAGTGGCAGATGGC...ACTTGTTCTCCATGATGCTTGGCTGGTTTGCCAAATGTTTATGTTGTTTTGATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| CDS-3UTR CCA 90 bp | AGATTCATATTTGTCTTGACATCCTTGGTCTTTGATTCTTTGGTACCATCAGTAGCCATCTGCCACTTTTaGCACTGTGAATTATGTAAT | + |
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Preference number: 4 (lower is better) Translates to: RFIFVLTSLVFDSLVPSVAICHF*HCELCN Trigger: ATTACATAATTCACAGTGCCAAAAGTGGCAGATGGC...TACTGATGGTACCAAAGAATCAAAGACCAAGGATGTCAAGACAAATATGAATCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162921.8 |
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| CDS-3UTR TCA 90 bp | AGATTCATATTTGTCTTGACATCCTTGGTCTTTGATTCTTTGGTACCATCAGTAAGATTGCATTTGAGGTaGATAATGGGAGTCTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: RFIFVLTSLVFDSLVPSVRLHLR*IMGVFF Trigger: GAAAAAGACTCCCATTATTCACCTCAAATGCAATCT...TACTGATGGTACCAAAGAATCAAAGACCAAGGATGTCAAGACAAATATGAATCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162921.8 |
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| CDS TCA 90 bp | CGTTTGACAGCGCATCATGCAAAGGCGTCACCCCGTCCACTTGAGTaGGCAGATCCACCTCTGGACAACGCTGCAGAATTTCCTGGACAC | + |
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Preference number: 5 (lower is better) Translates to: RLTAHHAKASPRPLE*ADPPLDNAAEFPGH Trigger: GTGTCCAGGAAATTCTGCAGCGTTGTCCAGAGGTGGATCTGCTCACTCAAGTGGACGGGGTGACGCCTTTGCATGATGCGCTGTCAAACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS TCA 90 bp | TGTCCGTTTGACAGCGCATCATGCAAAGGCGTCACCCCGTCCACTTaGGTGAGCAGATCCACCTCTGGACAACGCTGCAGAATTTCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: CPFDSASCKGVTPST*VSRSTSGQRCRISW Trigger: CCAGGAAATTCTGCAGCGTTGTCCAGAGGTGGATCTGCTCACTCAAGTGGACGGGGTGACGCCTTTGCATGATGCGCTGTCAAACGGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS GCA 90 bp | TCCTCTGCTGTAAAAGTTCTGGGCCCCCACGCTGTAGAAGCAGCTTaGCAATCTCCACATGTCCGTTTGACAGCGCATCATGCAAAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: SSAVKVLGPHAVEAA*QSPHVRLTAHHAKA Trigger: CGCCTTTGCATGATGCGCTGTCAAACGGACATGTGGAGATTGGCAAGCTGCTTCTACAGCGTGGGGGCCCAGAACTTTTACAGCAGAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS CCA 90 bp | ATGCAAAGGCGTCACCCCGTCCACTTGAGTGAGCAGATCCACCTCTaGACAACGCTGCAGAATTTCCTGGACACACTCCGTGTTGCCATA | + |
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Preference number: 5 (lower is better) Translates to: MQRRHPVHLSEQIHL*TTLQNFLDTLRVAI Trigger: TATGGCAACACGGAGTGTGTCCAGGAAATTCTGCAGCGTTGTCCAGAGGTGGATCTGCTCACTCAAGTGGACGGGGTGACGCCTTTGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS CCA 90 bp | TCACTCCGCTTATCTGCCCTAACAAGGAGAACAACTTTCCATCTGTaGAAGGCCCCAGGAGCACCAGTCCGTTTCAGCTCTTCACGCCAT | + |
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Preference number: 5 (lower is better) Translates to: SLRLSALTRRTTFHL*KAPGAPVRFSSSRH Trigger: ATGGCGTGAAGAGCTGAAACGGACTGGTGCTCCTGGGGCCTTCCACAGATGGAAAGTTGTTCTCCTTGTTAGGGCAGATAAGCGGAGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000151524.9 ENSMUST00000159300.8 ENSMUST00000159462.3 ENSMUST00000162921.8 ENSMUST00000162944.8 |
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| CDS GCA 90 bp | CATCATTCTGAATTTCTTTCTTACAAGAGAGTCACTCCGCTTATCTaGCCTAACAAGGAGAACAACTTTCCATCTGTGGAAGGCCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: HHSEFLSYKRVTPLI*PNKENNFPSVEGPR Trigger: CCTGGGGCCTTCCACAGATGGAAAGTTGTTCTCCTTGTTAGGGCAGATAAGCGGAGTGACTCTCTTGTAAGAAAGAAATTCAGAATGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000162921.8 ENSMUST00000162944.8 |
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| CDS-3UTR CAA 90 bp | GAAACCCCTCAACATTTGTACCAAGAGTCACACAAGAGAATATTCACTGCACACAAAAACTTCTCACTCTaGCACAGTCGTTCAGCTATA | + |
|
Preference number: 5 (lower is better) Translates to: ETPQHLYQESHKRIFTAHKNFSL*HSRSAI Trigger: TATAGCTGAACGACTGTGCAAGAGTGAGAAGTTTTT...GTGTGCAGTGAATATTCTCTTGTGTGACTCTTGGTACAAATGTTGAGGGGTTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| CDS-3UTR CAA 90 bp | GTACCAAGAGTCACACAAGAGAATATTCACTGCACACTGCAGAACTGTTTGATAATCCCCATTCATAAGTaGTTTCATCAAGCCATCTGC | + |
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Preference number: 5 (lower is better) Translates to: VPRVTQENIHCTLQNCLIIPIHK*FHQAIC Trigger: GCAGATGGCTTGATGAAACAACTTATGAATGGGGAT...TATCAAACAGTTCTGCAGTGTGCAGTGAATATTCTCTTGTGTGACTCTTGGTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162944.8 |
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| CDS CCA 90 bp | TCATACAAGTTGGACACTGAAATAGCTCTAAGTAGTATTTTAACATaGCTGGTGACTTCCAAGGAGGATGCAGATGAAGAAGAGCTGATA | + |
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Preference number: 5 (lower is better) Translates to: SYKLDTEIALSSILT*LVTSKEDADEEELI Trigger: TATCAGCTCTTCTTCATCTGCATCCTCCTTGGAAGTCACCAGCCATGTTAAAATACTACTTAGAGCTATTTCAGTGTCCAACTTGTATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS-3UTR CAA 90 bp | AGATTCATATTTGTCTTGACATCCTTGGTCTTTGATTCTTTGGTACCATCAGTACCAAGCAGGACTGATTaGGGAATGTTCATCATTCTG | + |
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Preference number: 5 (lower is better) Translates to: RFIFVLTSLVFDSLVPSVPSRTD*GMFIIL Trigger: CAGAATGATGAACATTCCCAAATCAGTCCTGCTTGG...TACTGATGGTACCAAAGAATCAAAGACCAAGGATGTCAAGACAAATATGAATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162921.8 |
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| CDS TCA 90 bp | TATACAGGCTGTTTATCTACTCTAATGCAGTTGTATCGGACAGCCTaGGCTCTATATATGTCCTTGTATATCTGCTTCTTTAAGGCATTT | + |
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Preference number: 5 (lower is better) Translates to: YTGCLSTLMQLYRTA*ALYMSLYICFFKAF Trigger: AAATGCCTTAAAGAAGCAGATATACAAGGACATATATAGAGCTCAGGCTGTCCGATACAACTGCATTAGAGTAGATAAACAGCCTGTATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS GCA 90 bp | AAATGGAGCCTTAAAGTTTTCTTGCTCTCTTTCAGCACTGATTCTTaGATTACTGGCAATCACATGTGTTATCCCACTTGGAGAATTTTT | + |
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Preference number: 5 (lower is better) Translates to: KWSLKVFLLSFSTDS*ITGNHMCYPTWRIF Trigger: AAAAATTCTCCAAGTGGGATAACACATGTGATTGCCAGTAATGCAAGAATCAGTGCTGAAAGAGAGCAAGAAAACTTTAAGGCTCCATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000151524.9 ENSMUST00000159300.8 ENSMUST00000159462.3 |
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| CDS-3UTR CAA 90 bp | AGATTCATATTTGTCTTGACATCCTTGGTCTTTGATTCTTTGGTACCATCAGTAATCCCCATTCATAAGTaGTTTCATCAAGCCATCTGC | + |
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Preference number: 5 (lower is better) Translates to: RFIFVLTSLVFDSLVPSVIPIHK*FHQAIC Trigger: GCAGATGGCTTGATGAAACAACTTATGAATGGGGAT...TACTGATGGTACCAAAGAATCAAAGACCAAGGATGTCAAGACAAATATGAATCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162921.8 |
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| CDS-3UTR CAA 90 bp | AGATTCATATTTGTCTTGACATCCTTGGTCTTTGATTCTTTGGTACCATCAGTAAAAAACTTCTCACTCTaGCACAGTCGTTCAGCTATA | + |
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Preference number: 5 (lower is better) Translates to: RFIFVLTSLVFDSLVPSVKNFSL*HSRSAI Trigger: TATAGCTGAACGACTGTGCAAGAGTGAGAAGTTTTT...TACTGATGGTACCAAAGAATCAAAGACCAAGGATGTCAAGACAAATATGAATCT 37% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000162921.8 |
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| CDS TCA 72 bp | GACAGCGCATCATGCAAAGGCGTCACCCCGTCCACTTaGGTGAGCAGATCCACCTCTGGACAACGCTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: DSASCKGVTPST*VSRSTSGQRCR Trigger: TCTGCAGCGTTGTCCAGAGGTGGATCTGCTCACTCAAGTGGACGGGGTGACGCCTTTGCATGATGCGCTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS CCA 72 bp | CGTCACCCCGTCCACTTGAGTGAGCAGATCCACCTCTaGACAACGCTGCAGAATTTCCTGGACACACTCCGT | + |
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Preference number: 6 (lower is better) Translates to: RHPVHLSEQIHL*TTLQNFLDTLR Trigger: ACGGAGTGTGTCCAGGAAATTCTGCAGCGTTGTCCAGAGGTGGATCTGCTCACTCAAGTGGACGGGGTGACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS TCA 72 bp | GCGCATCATGCAAAGGCGTCACCCCGTCCACTTGAGTaGGCAGATCCACCTCTGGACAACGCTGCAGAATTT | + |
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Preference number: 6 (lower is better) Translates to: AHHAKASPRPLE*ADPPLDNAAEF Trigger: AAATTCTGCAGCGTTGTCCAGAGGTGGATCTGCTCACTCAAGTGGACGGGGTGACGCCTTTGCATGATGCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS CAA 72 bp | GCTGTAGAAGCAGCTTGCCAATCTCCACATGTCCGTTaGACAGCGCATCATGCAAAGGCGTCACCCCGTCCA | + |
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Preference number: 6 (lower is better) Translates to: AVEAACQSPHVR*TAHHAKASPRP Trigger: TGGACGGGGTGACGCCTTTGCATGATGCGCTGTCAAACGGACATGTGGAGATTGGCAAGCTGCTTCTACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS CAA 90 bp | TTCCTCTGCTGTAAAAGTTCTGGGCCCCCACGCTGTAGAAGCAGCTaGCCAATCTCCACATGTCCGTTTGACAGCGCATCATGCAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: FLCCKSSGPPRCRSS*PISTCPFDSASCKG Trigger: GCCTTTGCATGATGCGCTGTCAAACGGACATGTGGAGATTGGCAAGCTGCTTCTACAGCGTGGGGGCCCAGAACTTTTACAGCAGAGGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS GCA 72 bp | GCAGAATTTCCTGGACACACTCCGTGTTGCCATAGTTaGAGGCTTCATGCAAAGGCGTCCAGCCAGCATTGT | + |
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Preference number: 6 (lower is better) Translates to: AEFPGHTPCCHS*RLHAKASSQHC Trigger: ACAATGCTGGCTGGACGCCTTTGCATGAAGCCTGCAACTATGGCAACACGGAGTGTGTCCAGGAAATTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS GCA 72 bp | GTAAAAGTTCTGGGCCCCCACGCTGTAGAAGCAGCTTaGCAATCTCCACATGTCCGTTTGACAGCGCATCAT | + |
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Preference number: 6 (lower is better) Translates to: VKVLGPHAVEAA*QSPHVRLTAHH Trigger: ATGATGCGCTGTCAAACGGACATGTGGAGATTGGCAAGCTGCTTCTACAGCGTGGGGGCCCAGAACTTTTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS CAA 72 bp | TGTAAAAGTTCTGGGCCCCCACGCTGTAGAAGCAGCTaGCCAATCTCCACATGTCCGTTTGACAGCGCATCA | + |
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Preference number: 6 (lower is better) Translates to: CKSSGPPRCRSS*PISTCPFDSAS Trigger: TGATGCGCTGTCAAACGGACATGTGGAGATTGGCAAGCTGCTTCTACAGCGTGGGGGCCCAGAACTTTTACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS CAA 90 bp | GGTTTAACTCTAGGAGCTCTGGCCGACCTTCTGCTTGTTTCCGTTTaGCACCATTCAGCATTAGTAATGCTCTTTGAGACTCTAGGCAAG | + |
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Preference number: 6 (lower is better) Translates to: GLTLGALADLLLVSV*HHSALVMLFETLGK Trigger: CTTGCCTAGAGTCTCAAAGAGCATTACTAATGCTGAATGGTGCAAAACGGAAACAAGCAGAAGGTCGGCCAGAGCTCCTAGAGTTAAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS GCA 72 bp | CACATCATTTTCAGTGTCACCAGTAAGGCCTCAGTATaGACTCCAGGACATACATTTAGATTCTCAGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: HIIFSVTSKASV*TPGHTFRFSGS Trigger: GCTGCCTGAGAATCTAAATGTATGTCCTGGAGTGCATACTGAGGCCTTACTGGTGACACTGAAAATGATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS GCA 72 bp | CTCCAAAACTCTTACAAGAGAGTCACTCCGCTTATCTaGCCTAACAAGGAGAACAACTTTCCATCTGTGGAA | + |
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Preference number: 6 (lower is better) Translates to: LQNSYKRVTPLI*PNKENNFPSVE Trigger: TTCCACAGATGGAAAGTTGTTCTCCTTGTTAGGGCAGATAAGCGGAGTGACTCTCTTGTAAGAGTTTTGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000151524.9 ENSMUST00000159300.8 ENSMUST00000159462.3 |
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| CDS GCA 72 bp | GAATTTCTTTCTTACAAGAGAGTCACTCCGCTTATCTaGCCTAACAAGGAGAACAACTTTCCATCTGTGGAA | + |
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Preference number: 6 (lower is better) Translates to: EFLSYKRVTPLI*PNKENNFPSVE Trigger: TTCCACAGATGGAAAGTTGTTCTCCTTGTTAGGGCAGATAAGCGGAGTGACTCTCTTGTAAGAAAGAAATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000162921.8 ENSMUST00000162944.8 |
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| CDS CCA 72 bp | ATGTGTCTATTTTATCCTGCAGAACATTCTCTAGAATaGCATGGAGAAGGCACACAGGAGGGATATAATGAG | + |
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Preference number: 6 (lower is better) Translates to: MCLFYPAEHSLE*HGEGTQEGYNE Trigger: CTCATTATATCCCTCCTGTGTGCCTTCTCCATGCCATTCTAGAGAATGTTCTGCAGGATAAAATAGACACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS CAA 72 bp | TTTCCTGCTGCACAAGCTGCTAAAAACTTCTCACTCTaGCACAGTCGTTCAGCTATAAGATGTGTACAGTTT | + |
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Preference number: 6 (lower is better) Translates to: FPAAQAAKNFSL*HSRSAIRCVQF Trigger: AAACTGTACACATCTTATAGCTGAACGACTGTGCAAGAGTGAGAAGTTTTTAGCAGCTTGTGCAGCAGGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000151524.9 ENSMUST00000159300.8 ENSMUST00000159462.3 ENSMUST00000162921.8 ENSMUST00000162944.8 |
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| CDS CCA 72 bp | TTGGACACTGAAATAGCTCTAAGTAGTATTTTAACATaGCTGGTGACTTCCAAGGAGGATGCAGATGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: LDTEIALSSILT*LVTSKEDADEE Trigger: TTCTTCATCTGCATCCTCCTTGGAAGTCACCAGCCATGTTAAAATACTACTTAGAGCTATTTCAGTGTCCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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| CDS GCA 72 bp | TATATCCCCATTCATAAGTTGTTTCATCAAGCCATCTaGCACTTTTGGCACTGTGAATTATGTAATCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: YIPIHKLFHQAI*HFWHCELCNPL Trigger: CAAAGGATTACATAATTCACAGTGCCAAAAGTGGCAGATGGCTTGATGAAACAACTTATGAATGGGGATATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000151524.9 ENSMUST00000159300.8 ENSMUST00000159462.3 ENSMUST00000162921.8 ENSMUST00000162944.8 |
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| CDS TCA 72 bp | GTATCACTATTGCATGCCATAAGCAACTCATTTAGATaGCCTAACCCTTTGAAAGCTAGAATAAATTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: VSLLHAISNSFR*PNPLKARINSE Trigger: CTCAGAATTTATTCTAGCTTTCAAAGGGTTAGGTCATCTAAATGAGTTGCTTATGGCATGCAATAGTGATAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151524.9 |
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