RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLCO5A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025938

Ensembl transcript IDs: ENSMUST00000115402.8, ENSMUST00000115403.9, ENSMUST00000136197.8, ENSMUST00000146763.8, ENSMUST00000147606.3, ENSMUST00000188454.7

Found 529 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GATGTAGTCCGGGAGTACTTCTCAGCTTTGCTGGGCTGGCCCACTTaGTCACTCACAGTGCTCAGTGGGAATTCCCTGCACCTCCGCCTC +
Preference number: 1 (lower is better)
Translates to: DVVREYFSALLGWPT*SLTVLSGNSLHLRL
Trigger: GAGGCGGAGGTGCAGGGAATTCCCACTGAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGAGAAGTACTCCCGGACTACATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR TCA 90 bp AGCAGTTTCTTCATGGACTTCCCCCTGGGTGCTGAAGGCTGGGCATaGTGTAGTCCGGGAGTACTTCTCAGCTTTGCTGGGCTGGCCCAC +
Preference number: 1 (lower is better)
Translates to: SSFFMDFPLGAEGWA*CSPGVLLSFAGLAH
Trigger: GTGGGCCAGCCCAGCAAAGCTGAGAAGTACTCCCGGACTACATCATGCCCAGCCTTCAGCACCCAGGGGGAAGTCCATGAAGAAACTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR GCA 90 bp AGTACTTCTCAGCTTTGCTGGGCTGGCCCACTTGCTCACTCACAGTaGTCAGTGGGAATTCCCTGCACCTCCGCCTCTGCAATCCGTCCT +
Preference number: 1 (lower is better)
Translates to: STSQLCWAGPLAHSQ*SVGIPCTSASAIRP
Trigger: AGGACGGATTGCAGAGGCGGAGGTGCAGGGAATTCCCACTGAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGAGAAGTACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR GCA 90 bp GGGCTTCAGCAGGGATGTTACAAAGCAGCATCGGGGCTCTCGTCCTaGCCAGGGTCTGCAGAGGAACTTACTGCTTCTGAGAAAGGTCCC +
Preference number: 1 (lower is better)
Translates to: GLQQGCYKAASGLSS*PGSAEELTASEKGP
Trigger: GGGACCTTTCTCAGAAGCAGTAAGTTCCTCTGCAGACCCTGGGCAGGACGAGAGCCCCGATGCTGCTTTGTAACATCCCTGCTGAAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR CCA 90 bp CTCAGCTTTGCTGGGCTGGCCCACTTGCTCACTCACAGTGCTCAGTaGGAATTCCCTGCACCTCCGCCTCTGCAATCCGTCCTCTTTGTA +
Preference number: 1 (lower is better)
Translates to: LSFAGLAHLLTHSAQ*EFPAPPPLQSVLFV
Trigger: TACAAAGAGGACGGATTGCAGAGGCGGAGGTGCAGGGAATTCCCACTGAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR CCA 90 bp AGTCGTCATCACTTCAGTGTGTACTCCAGCCTCGGCCCAGTTCTCTaGACTCTGGCAGACTCCAGCTGTCTGAAAACCCTGCTGGGCTCC +
Preference number: 1 (lower is better)
Translates to: SRHHFSVYSSLGPVL*TLADSSCLKTLLGS
Trigger: GGAGCCCAGCAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGGAGTACACACTGAAGTGATGACGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 90 bp GGGGCTCTCGTCCTGCCCAGGGTCTGCAGAGGAACTTACTGCTTCTaGGAAAGGTCCCGGATATGTCTGTGTGGTGCATGGGAATCCCTT +
Preference number: 1 (lower is better)
Translates to: GALVLPRVCRGTYCF*ERSRICLCGAWESL
Trigger: AAGGGATTCCCATGCACCACACAGACATATCCGGGACCTTTCTCAGAAGCAGTAAGTTCCTCTGCAGACCCTGGGCAGGACGAGAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR CCA 90 bp CCCTTTCAGTCCCCTCAGCAAGCTGGTGACCTTCAGGTGAAGGGATaGAGTCGTCATCACTTCAGTGTGTACTCCAGCCTCGGCCCAGTT +
Preference number: 1 (lower is better)
Translates to: PFQSPQQAGDLQVKG*SRHHFSVYSSLGPV
Trigger: AACTGGGCCGAGGCTGGAGTACACACTGAAGTGATGACGACTCCATCCCTTCACCTGAAGGTCACCAGCTTGCTGAGGGGACTGAAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 90 bp CCAGCCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTaGAAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAAC +
Preference number: 1 (lower is better)
Translates to: PASAQFSGLWQTPAV*KPCWAPHCLSIFSN
Trigger: GTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR GCA 90 bp TACACACACACACACACAGCTAGCACCTTAGGCAAGTGCTTGCCTTaGTACAGAGCTCATGGGAGAGTTCCCATGGGGGCTTTGGGTCCC +
Preference number: 1 (lower is better)
Translates to: YTHTHTASTLGKCLP*YRAHGRVPMGALGP
Trigger: GGGACCCAAAGCCCCCATGGGAACTCTCCCATGAGCTCTGTAGCAAGGCAAGCACTTGCCTAAGGTGCTAGCTGTGTGTGTGTGTGTGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 90 bp GGGAGAGGTTTTTCAGAGGTACCTGGAGGGCTATTTGGAGCCTCATaGACAAGGGAAACTGAAGTCATCATGGGTGCCTGGGGTCCCATC +
Preference number: 1 (lower is better)
Translates to: GRGFSEVPGGLFGAS*TRETEVIMGAWGPI
Trigger: GATGGGACCCCAGGCACCCATGATGACTTCAGTTTCCCTTGTTCATGAGGCTCCAAATAGCCCTCCAGGTACCTCTGAAAAACCTCTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CCA 90 bp CTGCCAGCCACATCCTTCCACACCGCATTAGACTGCTCCCAAGTCTaGAAAACAGAATTAGCGTGCTTGGCTTCTAGGCTATTCTGGGGC +
Preference number: 1 (lower is better)
Translates to: LPATSFHTALDCSQV*KTELACLASRLFWG
Trigger: GCCCCAGAATAGCCTAGAAGCCAAGCACGCTAATTCTGTTTTCCAGACTTGGGAGCAGTCTAATGCGGTGTGGAAGGATGTGGCTGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 90 bp TACTGGAAATCAAACCCAGCCCCTCTGGAGGAGCATTCAATGCTCTaGACGGTGAGCCATCTCTCCAGCCCCATAAACAGGGCTTTCAAC +
Preference number: 1 (lower is better)
Translates to: YWKSNPAPLEEHSML*TVSHLSSPINRAFN
Trigger: GTTGAAAGCCCTGTTTATGGGGCTGGAGAGATGGCTCACCGTTCAGAGCATTGAATGCTCCTCCAGAGGGGCTGGGTTTGATTTCCAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR TCA 90 bp AACAAATTTGAGGCCAGCCGCCAAGCCAAAGTAGACAAAACGAAATaGCGTCACGTTGTACTCCCAGCAAGAGCCCTGCACTCCGCATTC +
Preference number: 1 (lower is better)
Translates to: NKFEASRQAKVDKTK*RHVVLPARALHSAF
Trigger: GAATGCGGAGTGCAGGGCTCTTGCTGGGAGTACAACGTGACGTCATTTCGTTTTGTCTACTTTGGCTTGGCGGCTGGCCTCAAATTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR TCA 90 bp ATACTGGAAATTCTACCTGTGTGGCCTGCCAAGAATGTAGGTGTCTaGATCATGGCCTGTCTGCCAGCCCCCTCTCTTCCAGATGGAAAA +
Preference number: 1 (lower is better)
Translates to: ILEILPVWPAKNVGV*IMACLPAPSLPDGK
Trigger: TTTTCCATCTGGAAGAGAGGGGGCTGGCAGACAGGCCATGATTCAGACACCTACATTCTTGGCAGGCCACACAGGTAGAATTTCCAGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 90 bp CCCAGGAACTGTATTAAGAATACTGGAAATTCTACCTGTGTGGCCTaGCAAGAATGTAGGTGTCTGAATCATGGCCTGTCTGCCAGCCCC +
Preference number: 1 (lower is better)
Translates to: PRNCIKNTGNSTCVA*QECRCLNHGLSASP
Trigger: GGGGCTGGCAGACAGGCCATGATTCAGACACCTACATTCTTGGCAGGCCACACAGGTAGAATTTCCAGTATTCTTAATACAGTTCCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 90 bp TTCTCAACTTGCCGTATTCAACTCAACCAACAAAATCCATCTGTCTaGCTTCTCCGGGCTTCAGCAGGGATGTTACAAAGCAGCATCGGG +
Preference number: 1 (lower is better)
Translates to: FSTCRIQLNQQNPSV*LLRASAGMLQSSIG
Trigger: CCCGATGCTGCTTTGTAACATCCCTGCTGAAGCCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR GCA 90 bp CACACCGCATTAGACTGCTCCCAAGTCTGGAAAACAGAATTAGCGTaGTTGGCTTCTAGGCTATTCTGGGGCTTGCAACATTCTGGTTTC +
Preference number: 1 (lower is better)
Translates to: HTALDCSQVWKTELA*LASRLFWGLQHSGF
Trigger: GAAACCAGAATGTTGCAAGCCCCAGAATAGCCTAGAAGCCAAGCACGCTAATTCTGTTTTCCAGACTTGGGAGCAGTCTAATGCGGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 90 bp CACAGCATTCACAATCTATCACAGATAAGCATGACCCCACCTCCATaGCAGCCAAGCCCAGGACTCAAAGCAAAGTTCTTTTCACCTAGG +
Preference number: 1 (lower is better)
Translates to: HSIHNLSQISMTPPP*QPSPGLKAKFFSPR
Trigger: CCTAGGTGAAAAGAACTTTGCTTTGAGTCCTGGGCTTGGCTGCCATGGAGGTGGGGTCATGCTTATCTGTGATAGATTGTGAATGCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 90 bp GCCTGGAGCTGTTCTCACCTGAGAGTCACTATAATGGCTGATGGTTaGGCACATGCTGTGATGAAGGTAACTATGAAAAGGAAGACCAGG +
Preference number: 1 (lower is better)
Translates to: AWSCSHLRVTIMADG*AHAVMKVTMKRKTR
Trigger: CCTGGTCTTCCTTTTCATAGTTACCTTCATCACAGCATGTGCCCAACCATCAGCCATTATAGTGACTCTCAGGTGAGAACAGCTCCAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR GCA 90 bp CTGAGCAGCAATGAAGCTGAGATAATGCTGTCAATGGACCCAAGGTaGCTTTGGGAAGGGAATTATCCTGTCTCAGAGCCACTTAAGGAA +
Preference number: 1 (lower is better)
Translates to: LSSNEAEIMLSMDPR*LWEGNYPVSEPLKE
Trigger: TTCCTTAAGTGGCTCTGAGACAGGATAATTCCCTTCCCAAAGGCACCTTGGGTCCATTGACAGCATTATCTCAGCTTCATTGCTGCTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 90 bp TCTTTGAGTTCTGACCTCAGCCTTCCAAAGGATTTCATGGAGCAGTaGATGGTATCAACACATAACCAGTGCCCAGTCAGCAATTGCTGG +
Preference number: 1 (lower is better)
Translates to: SLSSDLSLPKDFMEQ*MVSTHNQCPVSNCW
Trigger: CCAGCAATTGCTGACTGGGCACTGGTTATGTGTTGATACCATTCACTGCTCCATGAAATCCTTTGGAAGGCTGAGGTCAGAACTCAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 90 bp GCCTTTGACAGTAGAGTAGACCATGGACTACCAGTAAAGATGAGATaGCAGAAGAGAGAAATAAGGTACACCAGGCCACTAGCCTCACCT +
Preference number: 1 (lower is better)
Translates to: AFDSRVDHGLPVKMR*QKREIRYTRPLASP
Trigger: AGGTGAGGCTAGTGGCCTGGTGTACCTTATTTCTCTCTTCTGTCATCTCATCTTTACTGGTAGTCCATGGTCTACTCTACTGTCAAAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 90 bp AAGCACTGCCTGGAGCTGTTCTCACCTGAGAGTCACTATAATGGCTaGTGGTTGGGCACATGCTGTGATGAAGGTAACTATGAAAAGGAA +
Preference number: 1 (lower is better)
Translates to: KHCLELFSPESHYNG*WLGTCCDEGNYEKE
Trigger: TTCCTTTTCATAGTTACCTTCATCACAGCATGTGCCCAACCATCAGCCATTATAGTGACTCTCAGGTGAGAACAGCTCCAGGCAGTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR CCA 90 bp TTAAAGACTGTGACCCAGAGCTGTGGAATAAACAGAAATTTTGGGTaGTTGGTGGGATGGGATTCTGAGAGCTTTGGGAGCCTCACTCTA +
Preference number: 1 (lower is better)
Translates to: LKTVTQSCGINRNFG*LVGWDSESFGSLTL
Trigger: TAGAGTGAGGCTCCCAAAGCTCTCAGAATCCCATCCCACCAACCACCCAAAATTTCTGTTTATTCCACAGCTCTGGGTCACAGTCTTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 90 bp GAGGAAGAAATGGGAAGCCTGGAGTCCAACCTTATCAAGTTTCCCTaGGTTGGCATGAATGTAAAACAGAATCCAGCTAATGAGGACCAG +
Preference number: 1 (lower is better)
Translates to: EEEMGSLESNLIKFP*VGMNVKQNPANEDQ
Trigger: CTGGTCCTCATTAGCTGGATTCTGTTTTACATTCATGCCAACTCAGGGAAACTTGATAAGGTTGGACTCCAGGCTTCCCATTTCTTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 90 bp GTTAATGCAGCCAGCCAGACATGGGTTGAAGTATGTGATCCCATCTaGTCCACAGACTGGCTCATATTCGTGTATTTTACAGCCACAATT +
Preference number: 1 (lower is better)
Translates to: VNAASQTWVEVCDPI*STDWLIFVYFTATI
Trigger: AATTGTGGCTGTAAAATACACGAATATGAGCCAGTCTGTGGATCAGATGGGATCACATACTTCAACCCATGTCTGGCTGGCTGCATTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR GCA 90 bp AACACAAATCTGGTTGAAACACAACAGGAAGTCTGGGACAGACAATaGCAGCAGCATTTCTTTGCCTTTGACAGTAGAGTAGACCATGGA +
Preference number: 1 (lower is better)
Translates to: NTNLVETQQEVWDRQ*QQHFFAFDSRVDHG
Trigger: TCCATGGTCTACTCTACTGTCAAAGGCAAAGAAATGCTGCTGGCATTGTCTGTCCCAGACTTCCTGTTGTGTTTCAACCAGATTTGTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 90 bp CCTCTTCAGACAAACACAAATCTGGTTGAAACACAACAGGAAGTCTaGGACAGACAATGCCAGCAGCATTTCTTTGCCTTTGACAGTAGA +
Preference number: 1 (lower is better)
Translates to: PLQTNTNLVETQQEV*DRQCQQHFFAFDSR
Trigger: TCTACTGTCAAAGGCAAAGAAATGCTGCTGGCATTGTCTGTCCCAGACTTCCTGTTGTGTTTCAACCAGATTTGTGTTTGTCTGAAGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 90 bp CAAGAAGGTGTCACATGTAACTGGAATTACAGAAGATTATGTGTGTaGGTACTGGAAATCAAACCCAGCCCCTCTGGAGGAGCATTCAAT +
Preference number: 1 (lower is better)
Translates to: QEGVTCNWNYRRLCV*VLEIKPSPSGGAFN
Trigger: ATTGAATGCTCCTCCAGAGGGGCTGGGTTTGATTTCCAGTACCCACACACATAATCTTCTGTAATTCCAGTTACATGTGACACCTTCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR TCA 90 bp AGCCACTTAAGGAAGGATAGAAGAACACATATACAAAGGGCACCGTaGAATGATGCTAGCTTTGAGAGTGCAGGATTCAGTATGGTAGAC +
Preference number: 1 (lower is better)
Translates to: SHLRKDRRTHIQRAP*NDASFESAGFSMVD
Trigger: GTCTACCATACTGAATCCTGCACTCTCAAAGCTAGCATCATTTCACGGTGCCCTTTGTATATGTGTTCTTCTATCCTTCCTTAAGTGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 90 bp CAAGTCTGGAAAACAGAATTAGCGTGCTTGGCTTCTAGGCTATTCTaGGGCTTGCAACATTCTGGTTTCTATCACTACATAGAATCCTCA +
Preference number: 1 (lower is better)
Translates to: QVWKTELACLASRLF*GLQHSGFYHYIESS
Trigger: TGAGGATTCTATGTAGTGATAGAAACCAGAATGTTGCAAGCCCCAGAATAGCCTAGAAGCCAAGCACGCTAATTCTGTTTTCCAGACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 90 bp TGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTaGCGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCTC +
Preference number: 1 (lower is better)
Translates to: CGGLQKERRHRCFST*RIQLNQQNPSVCLL
Trigger: GAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 90 bp TCAGTCCTTAATAATATAACAATGGGTCCACGAGGTCTCATTCAATaGCATGCAACAGGGGCTTCACTGAAAAGAAATGATCTCATGACC +
Preference number: 1 (lower is better)
Translates to: SVLNNITMGPRGLIQ*HATGASLKRNDLMT
Trigger: GGTCATGAGATCATTTCTTTTCAGTGAAGCCCCTGTTGCATGGCATTGAATGAGACCTCGTGGACCCATTGTTATATTATTAAGGACTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CCA 90 bp GGTATCCAGCCCTCATCAACAGTGGCTGTGTATACTGAGTTTTGTTaGTTTAAGGATGATGTCTGTGGAGGTTTACAAAAAGAAAGAAGG +
Preference number: 1 (lower is better)
Translates to: GIQPSSTVAVYTEFC*FKDDVCGGLQKERR
Trigger: CCTTCTTTCTTTTTGTAAACCTCCACAGACATCATCCTTAAACCAACAAAACTCAGTATACACAGCCACTGTTGATGAGGGCTGGATACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 90 bp ATCAAACTCTACATTATAACTCAAAGCAGCCTTTCATCACAAACATaGCTCTACAGAGAAGTACATAGACACACAGGACAGGCAGAAAGA +
Preference number: 1 (lower is better)
Translates to: IKLYIITQSSLSSQT*LYREVHRHTGQAER
Trigger: TCTTTCTGCCTGTCCTGTGTGTCTATGTACTTCTCTGTAGAGGCATGTTTGTGATGAAAGGCTGCTTTGAGTTATAATGTAGAGTTTGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 90 bp TGTTTAATCCTAAACTTCCCTAAGAAGCTTCAAAGTTCAATTCTGTaGCATGCTACGTGCTCATTTGGGGTCACAAATACACACAGCTTT +
Preference number: 1 (lower is better)
Translates to: CLILNFPKKLQSSIL*HATCSFGVTNTHSF
Trigger: AAAGCTGTGTGTATTTGTGACCCCAAATGAGCACGTAGCATGTCACAGAATTGAACTTTGAAGCTTCTTAGGGAAGTTTAGGATTAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR CCA 90 bp TTCCAATCAAATTGCATAGTTGAAGCAAATTCAATTGTGCTTTGCTaGAGAACTCACAGTAGGTGCTCAAATCTAAAAGCTCTGACTTGC +
Preference number: 1 (lower is better)
Translates to: FQSNCIVEANSIVLC*RTHSRCSNLKALTC
Trigger: GCAAGTCAGAGCTTTTAGATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTATGCAATTTGATTGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 90 bp TATTTCCAATCAAATTGCATAGTTGAAGCAAATTCAATTGTGCTTTaGTGGAGAACTCACAGTAGGTGCTCAAATCTAAAAGCTCTGACT +
Preference number: 1 (lower is better)
Translates to: YFQSNCIVEANSIVL*WRTHSRCSNLKALT
Trigger: AGTCAGAGCTTTTAGATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTATGCAATTTGATTGGAAATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 90 bp CACTCGGAGCTGGCTGCGCTGCCCCACTGTGGGCGGGGTGATCACTaGTCGGCTTTGGACACAGGTACACTCTGTGTAATTTCGGACCTG +
Preference number: 2 (lower is better)
Translates to: HSELAALPHCGRGDH*SALDTGTLCVISDL
Trigger: CAGGTCCGAAATTACACAGAGTGTACCTGTGTCCAAAGCCGACAAGTGATCACCCCGCCCACAGTGGGGCAGCGCAGCCAGCTCCGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR CAA 90 bp GTGCTGAAGGCTGGGCATGATGTAGTCCGGGAGTACTTCTCAGCTTaGCTGGGCTGGCCCACTTGCTCACTCACAGTGCTCAGTGGGAAT +
Preference number: 2 (lower is better)
Translates to: VLKAGHDVVREYFSA*LGWPTCSLTVLSGN
Trigger: ATTCCCACTGAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGAGAAGTACTCCCGGACTACATCATGCCCAGCCTTCAGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR CAA 90 bp CTGGCTGCGCTGCCCCACTGTGGGCGGGGTGATCACTTGTCGGCTTaGGACACAGGTACACTCTGTGTAATTTCGGACCTGAGTAGCAAA +
Preference number: 2 (lower is better)
Translates to: LAALPHCGRGDHLSA*DTGTLCVISDLSSK
Trigger: TTTGCTACTCAGGTCCGAAATTACACAGAGTGTACCTGTGTCCAAAGCCGACAAGTGATCACCCCGCCCACAGTGGGGCAGCGCAGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR-3UTR GCA 90 bp TCAGCTTTGCTGGGCTGGCCCACTTGCTCACTCACAGTGCTCAGTGGGAATTCCTGCACTCCGCATTCCTaGTGCCAGAGCATACAGGTG +
Preference number: 2 (lower is better)
Translates to: SALLGWPTCSLTVLSGNSCTPHS*CQSIQV
Trigger: CACCTGTATGCTCTGGCAGCAGGAATGCGGAGTGCA...GGAATTCCCACTGAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR-3UTR GCA 90 bp TACAAAGCAGCATCGGGGCTCTCGTCCTGCCCAGGGTCTGCAGAGGAACTTACTCTTGCTCACTCACAGTaGTCAGTGGGAATTCCCTGC +
Preference number: 2 (lower is better)
Translates to: YKAASGLSSCPGSAEELTLAHSQ*SVGIPC
Trigger: GCAGGGAATTCCCACTGAGCACTGTGAGTGAGCAAG...AGTAAGTTCCTCTGCAGACCCTGGGCAGGACGAGAGCCCCGATGCTGCTTTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR-3UTR CCA 90 bp TGCCTTGCTACAGAGCTCATGGGAGAGTTCCCATGGGGGCTTTGGGTCCCGCCATGTGGTGATGTTCCTTaGTGCACACAGGGTTCTACA +
Preference number: 2 (lower is better)
Translates to: CLATELMGEFPWGLWVPPCGDVP*CTQGST
Trigger: TGTAGAACCCTGTGTGCACCAAGGAACATCACCACA...TGGCGGGACCCAAAGCCCCCATGGGAACTCTCCCATGAGCTCTGTAGCAAGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR GCA 90 bp CCAACAAAATCCATCTGTCTGCCTTCTCCGGGCTTCAGCAGGGATGTTACAAAGTCCCAGCAAGAGCCCTaGACTCCGCATTCCTGCTGC +
Preference number: 2 (lower is better)
Translates to: PTKSICLPSPGFSRDVTKSQQEP*TPHSCC
Trigger: GCAGCAGGAATGCGGAGTGCAGGGCTCTTGCTGGGA...CTTTGTAACATCCCTGCTGAAGCCCGGAGAAGGCAGACAGATGGATTTTGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR CAA 90 bp CACGTATGGGTGCCTGCCAGCAGCTTTTCCTTCCTATCCCCTGCTTaGTTTGACTTCTGTCCCTCTGCAATAGGCTCTCTCAAGCACTGC +
Preference number: 2 (lower is better)
Translates to: HVWVPASSFSFLSPA*FDFCPSAIGSLKHC
Trigger: GCAGTGCTTGAGAGAGCCTATTGCAGAGGGACAGAAGTCAAACAAAGCAGGGGATAGGAAGGAAAAGCTGCTGGCAGGCACCCATACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR-3UTR TCA 90 bp CGGGAGTACTTCTCAGCTTTGCTGGGCTGGCCCACTTGCTCACTCACAGTGCTCGTAGACAAAACGAAATaGCGTCACGTTGTACTCCCA +
Preference number: 2 (lower is better)
Translates to: REYFSALLGWPTCSLTVLVDKTK*RHVVLP
Trigger: TGGGAGTACAACGTGACGTCATTTCGTTTTGTCTAC...GAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGAGAAGTACTCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR-3UTR TCA 90 bp AGGCTAGGGTGCTGCTCGGGGAGAGAGAACATGTCATATGCAGGGTCCCTCGCTATTCCCTCAGGACTTTaGGGACTTACTCTACAGTCA +
Preference number: 2 (lower is better)
Translates to: RLGCCSGRENMSYAGSLAIPSGL*GLTLQS
Trigger: TGACTGTAGAGTAAGTCCTCAAAGTCCTGAGGGAAT...AGCGAGGGACCCTGCATATGACATGTTCTCTCTCCCCGAGCAGCACCCTAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR TCA 90 bp AACACACACATGATGGCTTCCGGTGTGCAGACGGGCTGGCCTAGGGATGCTGGTCTATTTGGAGCCTCATaGACAAGGGAAACTGAAGTC +
Preference number: 2 (lower is better)
Translates to: NTHMMASGVQTGWPRDAGLFGAS*TRETEV
Trigger: GACTTCAGTTTCCCTTGTTCATGAGGCTCCAAATAG...ACCAGCATCCCTAGGCCAGCCCGTCTGCACACCGGAAGCCATCATGTGTGTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp CCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCCTGCTTCAATCTCCAGAGCTTaGCAGCTATGTCATTGGGAA +
Preference number: 2 (lower is better)
Translates to: PRPSSLDSGRLQLSENPASISRA*QLCHWE
Trigger: TTCCCAATGACATAGCTGGCAAGCTCTGGAGATTGA...AGCAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp TGCCTTGCTACAGAGCTCATGGGAGAGTTCCCATGGGGGCTTTGGGTCCCGCCAAGCCCTCATCAACAGTaGCTGTGTATACTGAGTTTT +
Preference number: 2 (lower is better)
Translates to: CLATELMGEFPWGLWVPPSPHQQ*LCILSF
Trigger: AAAACTCAGTATACACAGCCACTGTTGATGAGGGCT...TGGCGGGACCCAAAGCCCCCATGGGAACTCTCCCATGAGCTCTGTAGCAAGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CCA 90 bp TGCCTTGCTACAGAGCTCATGGGAGAGTTCCCATGGGGGCTTTGGGTCCCGCCAGACAGATGGGGTCTGTaGCTTGGAGTATATTTTCTA +
Preference number: 2 (lower is better)
Translates to: CLATELMGEFPWGLWVPPDRWGL*LGVYFL
Trigger: TAGAAAATATACTCCAAGCCACAGACCCCATCTGTC...TGGCGGGACCCAAAGCCCCCATGGGAACTCTCCCATGAGCTCTGTAGCAAGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR GCA 90 bp TGCCTTGCTACAGAGCTCATGGGAGAGTTCCCATGGGGGCTTTGGGTCCCGCCAAAAGCCAAAGGGACATaGCACACTTTTCTATTTCCA +
Preference number: 2 (lower is better)
Translates to: CLATELMGEFPWGLWVPPKAKGT*HTFLFP
Trigger: TGGAAATAGAAAAGTGTGGCATGTCCCTTTGGCTTT...TGGCGGGACCCAAAGCCCCCATGGGAACTCTCCCATGAGCTCTGTAGCAAGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR GCA 90 bp AGCCCAGAAGAGCACGTATGGGTGCCTGCCAGCAGCTTTTCCTTCCTATCCCCTTCTCATTCAATGCCATaGAACAGGGGCTTCACTGAA +
Preference number: 2 (lower is better)
Translates to: SPEEHVWVPASSFSFLSPSHSMP*NRGFTE
Trigger: TTCAGTGAAGCCCCTGTTGCATGGCATTGAATGAGA...AGGGGATAGGAAGGAAAAGCTGCTGGCAGGCACCCATACGTGCTCTTCTGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR-3UTR TCA 90 bp GTGAAGGGATGGAGTCGTCATCACTTCAGTGTGTACTCCAGCCTCGGCCCAGTTACACATTGTGTCTACTaGGCAAGACACAAAGGTCAG +
Preference number: 2 (lower is better)
Translates to: VKGWSRHHFSVYSSLGPVTHCVY*ARHKGQ
Trigger: CTGACCTTTGTGTCTTGCTCAGTAGACACAATGTGT...AACTGGGCCGAGGCTGGAGTACACACTGAAGTGATGACGACTCCATCCCTTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR TCA 90 bp AACACACACATGATGGCTTCCGGTGTGCAGACGGGCTGGCCTAGGGATGCTGGTAAACAGAATCCAGCTTaGTTTTTATGTGTGCTCACC +
Preference number: 2 (lower is better)
Translates to: NTHMMASGVQTGWPRDAGKQNPA*FLCVLT
Trigger: GGTGAGCACACATAAAAATCAAGCTGGATTCTGTTT...ACCAGCATCCCTAGGCCAGCCCGTCTGCACACCGGAAGCCATCATGTGTGTGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp TCCAGCCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCCTTGATTTTTATGTGTaGTCACCAGAGTGCCTAACA +
Preference number: 2 (lower is better)
Translates to: SSLGPVLWTLADSSCLKTLDFYV*SPECLT
Trigger: TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAG...GGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp GTCCCGCCACACTGTGGTGATGTTCCTTGGTGCACACAGGGTTCTACAAAGCAGGTTAACCAGGAAGTGTaGGTGGCTCTCATAGATATG +
Preference number: 2 (lower is better)
Translates to: VPPHCGDVPWCTQGSTKQVNQEV*VALIDM
Trigger: CATATCTATGAGAGCCACCCACACTTCCTGGTTAAC...CTGCTTTGTAGAACCCTGTGTGCACCAAGGAACATCACCACAGTGTGGCGGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CCA 90 bp CCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCCTGCTGAAATATCTTTACTCTaGAAGTTAAGGGGTAGGGGA +
Preference number: 2 (lower is better)
Translates to: PRPSSLDSGRLQLSENPAEISLL*KLRGRG
Trigger: TCCCCTACCCCTTAACTTCCAGAGTAAAGATATTTC...AGCAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp CCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTACGCAGCCAGCCAGACATaGGTTGAAGTATGTGATCCC +
Preference number: 2 (lower is better)
Translates to: PAGLHIACLFSPTYVWPYAASQT*VEVCDP
Trigger: GGGATCACATACTTCAACCCATGTCTGGCTGGCTGC...GTAGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR TCA 90 bp CCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCCTGCTTTCACTGAAAAGAAATaGTCTCATGACCTCAATAGG +
Preference number: 2 (lower is better)
Translates to: PRPSSLDSGRLQLSENPAFTEKK*SHDLNR
Trigger: CCTATTGAGGTCATGAGATCATTTCTTTTCAGTGAA...AGCAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR TCA 90 bp AACACACACATGATGGCTTCCGGTGTGCAGACGGGCTGGCCTAGGGATGCTGGTTTCACTGAAAAGAAATaGTCTCATGACCTCAATAGG +
Preference number: 2 (lower is better)
Translates to: NTHMMASGVQTGWPRDAGFTEKK*SHDLNR
Trigger: CCTATTGAGGTCATGAGATCATTTCTTTTCAGTGAA...ACCAGCATCCCTAGGCCAGCCCGTCTGCACACCGGAAGCCATCATGTGTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR TCA 90 bp TGTGCACCTTTTGCATGTCTGGTGCCTGTGATGGGGACAAGAAGGTGTCACATGATCCCCTGCTTTGTTTaGCTTCTGTCCCTCTGCAAT +
Preference number: 2 (lower is better)
Translates to: CAPFACLVPVMGTRRCHMIPCFV*LLSLCN
Trigger: ATTGCAGAGGGACAGAAGTCAAACAAAGCAGGGGAT...CATGTGACACCTTCTTGTCCCCATCACAGGCACCAGACATGCAAAAGGTGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR-3UTR GCA 90 bp TGCCCAGGGTCTGCAGAGGAACTTACTGCTTCTGAGAAAGGTCCCGGATATGTCCATGGGAATCCCTTTTaGAGAGCAGTTTCTTCATGG +
Preference number: 2 (lower is better)
Translates to: CPGSAEELTASEKGPGYVHGNPF*RAVSSW
Trigger: CCATGAAGAAACTGCTCTGCAAAAGGGATTCCCATG...GACATATCCGGGACCTTTCTCAGAAGCAGTAAGTTCCTCTGCAGACCCTGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR-3UTR GCA 90 bp AACATGCTGTTAGAGGGCACTGAAGACAGAGGGGTAAAGGAGACCACGTCTTCTCGAGGTCTCATTCAATaGCATGCAACAGGGGCTTCA +
Preference number: 2 (lower is better)
Translates to: NMLLEGTEDRGVKETTSSRGLIQ*HATGAS
Trigger: TGAAGCCCCTGTTGCATGGCATTGAATGAGACCTCG...AGAAGACGTGGTCTCCTTTACCCCTCTGTCTTCAGTGCCCTCTAACAGCATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp CCTCAGCAAGCTGGTGACCTTCAGGTGAAGGGATGGAGTCGTCATCACTTCAGTTGCTGGGCTCCACATTaGTTGTCTATTTTCTCCAAC +
Preference number: 2 (lower is better)
Translates to: PQQAGDLQVKGWSRHHFSCWAPH*LSIFSN
Trigger: GTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCA...ACTGAAGTGATGACGACTCCATCCCTTCACCTGAAGGTCACCAGCTTGCTGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp GTGAAGGGATGGAGTCGTCATCACTTCAGTGTGTACTCCAGCCTCGGCCCAGTTAAGAAATGGGAAGCCTaGAGTCCAACCTTATCAAGT +
Preference number: 2 (lower is better)
Translates to: VKGWSRHHFSVYSSLGPVKKWEA*SPTLSS
Trigger: ACTTGATAAGGTTGGACTCCAGGCTTCCCATTTCTT...AACTGGGCCGAGGCTGGAGTACACACTGAAGTGATGACGACTCCATCCCTTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CAA 90 bp AAGACTGTGACCCAGAGCTGTGGAATAAACAGAAATTTTGGGTGGTaGGTGGGATGGGATTCTGAGAGCTTTGGGAGCCTCACTCTACCA +
Preference number: 2 (lower is better)
Translates to: KTVTQSCGINRNFGW*VGWDSESFGSLTLP
Trigger: TGGTAGAGTGAGGCTCCCAAAGCTCTCAGAATCCCATCCCACCAACCACCCAAAATTTCTGTTTATTCCACAGCTCTGGGTCACAGTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR GCA 90 bp TCCAGCCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCGGCCAATTTATCCTCTaGCTATCATGTTACTTTTTA +
Preference number: 2 (lower is better)
Translates to: SSLGPVLWTLADSSCLKTGQFIL*LSCYFL
Trigger: TAAAAAGTAACATGATAGGCAGAGGATAAATTGGCC...GGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp TGTGCACCTTTTGCATGTCTGGTGCCTGTGATGGGGACAAGAAGGTGTCACATGTGCTGGGCTCCACATTaGTTGTCTATTTTCTCCAAC +
Preference number: 2 (lower is better)
Translates to: CAPFACLVPVMGTRRCHMCWAPH*LSIFSN
Trigger: GTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCA...CATGTGACACCTTCTTGTCCCCATCACAGGCACCAGACATGCAAAAGGTGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR-3UTR CCA 90 bp GTGAAGGGATGGAGTCGTCATCACTTCAGTGTGTACTCCAGCCTCGGCCCAGTTGAAATATCTTTACTCTaGAAGTTAAGGGGTAGGGGA +
Preference number: 2 (lower is better)
Translates to: VKGWSRHHFSVYSSLGPVEISLL*KLRGRG
Trigger: TCCCCTACCCCTTAACTTCCAGAGTAAAGATATTTC...AACTGGGCCGAGGCTGGAGTACACACTGAAGTGATGACGACTCCATCCCTTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CAA 90 bp ACTCTGGCAGACTCCAGCTGTCTGAAAACCCTGCTGGGCTCCACATaGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTACTAATGTA +
Preference number: 2 (lower is better)
Translates to: TLADSSCLKTLLGST*LVYFLQHMSGPTNV
Trigger: TACATTAGTAGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CAA 90 bp CCAGTGGTAAGATTACCACTGTTAATGCAGCCAGCCAGACATGGGTaGAAGTATGTGATCCCATCTGATCCACAGACTGGCTCATATTCG +
Preference number: 2 (lower is better)
Translates to: PVVRLPLLMQPARHG*KYVIPSDPQTGSYS
Trigger: CGAATATGAGCCAGTCTGTGGATCAGATGGGATCACATACTTCAACCCATGTCTGGCTGGCTGCATTAACAGTGGTAATCTTACCACTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR TCA 90 bp CACAGCATAGCCGTTCTCATTGAGATAGGTTTTGACGATGACCACTCGGAGCTGACACATTGTGTCTACTaGGCAAGACACAAAGGTCAG +
Preference number: 2 (lower is better)
Translates to: HSIAVLIEIGFDDDHSELTHCVY*ARHKGQ
Trigger: CTGACCTTTGTGTCTTGCTCAGTAGACACAATGTGT...CAGCTCCGAGTGGTCATCGTCAAAACCTATCTCAATGAGAACGGCTATGCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR-3UTR GCA 90 bp GATGATGTCTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTCTGGGCTGGCCCACTTaGTCACTCACAGTGCTCAGT +
Preference number: 2 (lower is better)
Translates to: DDVCGGLQKERRHRCFSTLGWPT*SLTVLS
Trigger: ACTGAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAG...AGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAGACATCATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR-3UTR GCA 90 bp CCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTACTCAATCTCCAGAGCTTaGCAGCTATGTCATTGGGAA +
Preference number: 2 (lower is better)
Translates to: PAGLHIACLFSPTYVWPYSISRA*QLCHWE
Trigger: TTCCCAATGACATAGCTGGCAAGCTCTGGAGATTGA...GTAGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp TGCTGGTTTCAGTACAGTGATGAGGGACGTTCCGTTGGCTATTCCAGTTTACCCTCTCATTCAATGCCATaGAACAGGGGCTTCACTGAA +
Preference number: 2 (lower is better)
Translates to: CWFQYSDEGRSVGYSSLPSHSMP*NRGFTE
Trigger: TTCAGTGAAGCCCCTGTTGCATGGCATTGAATGAGA...GGGTAAACTGGAATAGCCAACGGAACGTCCCTCATCACTGTACTGAAACCAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CAA 90 bp ACCGCATTAGACTGCTCCCAAGTCTGGAAAACAGAATTAGCGTGCTaGGCTTCTAGGCTATTCTGGGGCTTGCAACATTCTGGTTTCTAT +
Preference number: 2 (lower is better)
Translates to: TALDCSQVWKTELAC*ASRLFWGLQHSGFY
Trigger: ATAGAAACCAGAATGTTGCAAGCCCCAGAATAGCCTAGAAGCCAAGCACGCTAATTCTGTTTTCCAGACTTGGGAGCAGTCTAATGCGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR TCA 90 bp CTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTACTACACATTGTGTCTACTaGGCAAGACACAAAGGTCAG +
Preference number: 2 (lower is better)
Translates to: LLGSTLLVYFLQHMSGPTTHCVY*ARHKGQ
Trigger: CTGACCTTTGTGTCTTGCTCAGTAGACACAATGTGT...AGTAGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR TCA 90 bp CCTGAAAACAGAATCCAGCTTGATTTTTATGTGTGCTCACCAGAGTGCCTAACAGCTGTTAGAGGGCACTaGAGACAGAGGGGTAAAGGA +
Preference number: 2 (lower is better)
Translates to: PENRIQLDFYVCSPECLTAVRGH*RQRGKG
Trigger: TCCTTTACCCCTCTGTCTTCAGTGCCCTCTAACAGC...TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAGCTGGATTCTGTTTTCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR TCA 90 bp AAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTATTTGGAGCCTCATaGACAAGGGAAACTGAAGTC +
Preference number: 2 (lower is better)
Translates to: KPCWAPHCLSIFSNICLALFGAS*TRETEV
Trigger: GACTTCAGTTTCCCTTGTTCATGAGGCTCCAAATAG...GGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp ATAGTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCACTGCACCTCCGCCTCTaGAATCCGTCCTCTTTGTAC +
Preference number: 2 (lower is better)
Translates to: IVEANSIVLCWRTHSRCSLHLRL*NPSSLY
Trigger: GTACAAAGAGGACGGATTGCAGAGGCGGAGGTGCAG...TGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR-3UTR GCA 90 bp AACATGCTGTTAGAGGGCACTGAAGACAGAGGGGTAAAGGAGACCACGTCTTCTATGAATAATGGCCATTaGCCATCTTCACAACCACCA +
Preference number: 2 (lower is better)
Translates to: NMLLEGTEDRGVKETTSSMNNGH*PSSQPP
Trigger: TGGTGGTTGTGAAGATGGGCAATGGCCATTATTCAT...AGAAGACGTGGTCTCCTTTACCCCTCTGTCTTCAGTGCCCTCTAACAGCATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp TTGCAAATGCAAAGTCATGGTCAAGCTCACCTTTATCTGGAGTGTATGCTAATGACTCACAGTGCTCAGTaGGAATTCCCTGCACCTCCG +
Preference number: 2 (lower is better)
Translates to: LQMQSHGQAHLYLECMLMTHSAQ*EFPAPP
Trigger: CGGAGGTGCAGGGAATTCCCACTGAGCACTGTGAGT...CATTAGCATACACTCCAGATAAAGGTGAGCTTGACCATGACTTTGCATTTGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR-3UTR TCA 90 bp GGTCAAGCTCACCTTTATCTGGAGTGTATGCTAATGATATGTGTGGTCATAGCCAAGCTATCAGGTGCATaGTTCAGCAGCCTCTTGATC +
Preference number: 2 (lower is better)
Translates to: GQAHLYLECMLMICVVIAKLSGA*FSSLLI
Trigger: GATCAAGAGGCTGCTGAATCATGCACCTGATAGCTT...GGCTATGACCACACATATCATTAGCATACACTCCAGATAAAGGTGAGCTTGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR TCA 90 bp TGCTGGTTTCAGTACAGTGATGAGGGACGTTCCGTTGGCTATTCCAGTTTACCCAAACAGAATCCAGCTTaGTTTTTATGTGTGCTCACC +
Preference number: 2 (lower is better)
Translates to: CWFQYSDEGRSVGYSSLPKQNPA*FLCVLT
Trigger: GGTGAGCACACATAAAAATCAAGCTGGATTCTGTTT...GGGTAAACTGGAATAGCCAACGGAACGTCCCTCATCACTGTACTGAAACCAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp AAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCATGAATAATGGCCATTaGCCATCTTCACAACCACCA +
Preference number: 2 (lower is better)
Translates to: KPCWAPHCLSIFSNICLAMNNGH*PSSQPP
Trigger: TGGTGGTTGTGAAGATGGGCAATGGCCATTATTCAT...GGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp CTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTACTATGAATAATGGCCATTaGCCATCTTCACAACCACCA +
Preference number: 2 (lower is better)
Translates to: LLGSTLLVYFLQHMSGPTMNNGH*PSSQPP
Trigger: TGGTGGTTGTGAAGATGGGCAATGGCCATTATTCAT...AGTAGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp ACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTTCATTAAAAAGACCCTaGCAGAGGAAGAAATGGGAA +
Preference number: 2 (lower is better)
Translates to: TLLGSTLLVYFLQHMSGPSLKRP*QRKKWE
Trigger: TTCCCATTTCTTCCTCTGCCAGGGTCTTTTTAATGA...AGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp ACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTTGCCAGCTATGTCATTaGGAACCAGCAATAGTAATA +
Preference number: 2 (lower is better)
Translates to: TLLGSTLLVYFLQHMSGPCQLCH*EPAIVI
Trigger: TATTACTATTGCTGGTTCCCAATGACATAGCTGGCA...AGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp CCTGAAAACAGAATCCAGCTTGATTTTTATGTGTGCTCACCAGAGTGCCTAACAAAACTGAAGTCATCATaGGTGCCTGGGGTCCCATCA +
Preference number: 2 (lower is better)
Translates to: PENRIQLDFYVCSPECLTKLKSS*VPGVPS
Trigger: TGATGGGACCCCAGGCACCCATGATGACTTCAGTTT...TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAGCTGGATTCTGTTTTCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp ATGCTAATGATATGTGTGGTCATAGCCTTTCCCATGGCTAACCATGGACCTCAGAGCCCTCATCAACAGTaGCTGTGTATACTGAGTTTT +
Preference number: 2 (lower is better)
Translates to: MLMICVVIAFPMANHGPQSPHQQ*LCILSF
Trigger: AAAACTCAGTATACACAGCCACTGTTGATGAGGGCT...CTGAGGTCCATGGTTAGCCATGGGAAAGGCTATGACCACACATATCATTAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 90 bp TGGAAAACAGAATTAGCGTGCTTGGCTTCTAGGCTATTCTGGGGCTaGCAACATTCTGGTTTCTATCACTACATAGAATCCTCAGCATGT +
Preference number: 2 (lower is better)
Translates to: WKTELACLASRLFWG*QHSGFYHYIESSAC
Trigger: ACATGCTGAGGATTCTATGTAGTGATAGAAACCAGAATGTTGCAAGCCCCAGAATAGCCTAGAAGCCAAGCACGCTAATTCTGTTTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR GCA 90 bp CCTGAAAACAGAATCCAGCTTGATTTTTATGTGTGCTCACCAGAGTGCCTAACATCAATCTCCAGAGCTTaGCAGCTATGTCATTGGGAA +
Preference number: 2 (lower is better)
Translates to: PENRIQLDFYVCSPECLTSISRA*QLCHWE
Trigger: TTCCCAATGACATAGCTGGCAAGCTCTGGAGATTGA...TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAGCTGGATTCTGTTTTCAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp GTCTATTTTCTCCAACATATGTCTGGCCCTACTAATGTAGAACATGCTGTTAGACGAGGTCTCATTCAATaGCATGCAACAGGGGCTTCA +
Preference number: 2 (lower is better)
Translates to: VYFLQHMSGPTNVEHAVRRGLIQ*HATGAS
Trigger: TGAAGCCCCTGTTGCATGGCATTGAATGAGACCTCG...TCTAACAGCATGTTCTACATTAGTAGGGCCAGACATATGTTGGAGAAAATAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp AAAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCGAAATATCTTTACTCTaGAAGTTAAGGGGTAGGGGA +
Preference number: 2 (lower is better)
Translates to: KTLLGSTLLVYFLQHMSGEISLL*KLRGRG
Trigger: TCCCCTACCCCTTAACTTCCAGAGTAAAGATATTTC...GCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CAA 90 bp CTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTaGCCGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCT +
Preference number: 2 (lower is better)
Translates to: LWRFTKRKKAQVFLN*PYSTQPTKSICLPS
Trigger: AGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR TCA 90 bp AAAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCTGTTACCAAACAAGATaGGAAATACTAAACTGGCCA +
Preference number: 2 (lower is better)
Translates to: KTLLGSTLLVYFLQHMSGCYQTR*EILNWP
Trigger: TGGCCAGTTTAGTATTTCTCATCTTGTTTGGTAACA...GCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp TTCTGGTTTCTATCACTACATAGAATCCTCAGCATGTACCTCTGCAGCAAGTTAGCTCTGACTTGCAAATaGAAAGTCATGGTCAAGCTC +
Preference number: 2 (lower is better)
Translates to: FWFLSLHRILSMYLCSKLALTCK*KVMVKL
Trigger: GAGCTTGACCATGACTTTGCATTTGCAAGTCAGAGC...TAACTTGCTGCAGAGGTACATGCTGAGGATTCTATGTAGTGATAGAAACCAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CCA 90 bp TTCTGGTTTCTATCACTACATAGAATCCTCAGCATGTACCTCTGCAGCAAGTTATCAATTGTGCTTTGCTaGAGAACTCACAGTAGGTGC +
Preference number: 2 (lower is better)
Translates to: FWFLSLHRILSMYLCSKLSIVLC*RTHSRC
Trigger: GCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGA...TAACTTGCTGCAGAGGTACATGCTGAGGATTCTATGTAGTGATAGAAACCAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CCA 90 bp TTCTGGTTTCTATCACTACATAGAATCCTCAGCATGTACCTCTGCAGCAAGTTACCAGTCAGCAATTGCTaGACTGAATTCAAGGTAGAG +
Preference number: 2 (lower is better)
Translates to: FWFLSLHRILSMYLCSKLPVSNC*TEFKVE
Trigger: CTCTACCTTGAATTCAGTCCAGCAATTGCTGACTGG...TAACTTGCTGCAGAGGTACATGCTGAGGATTCTATGTAGTGATAGAAACCAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CCA 90 bp AAAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCAAGTTTCCCTGAGTTaGCATGAATGTAAAACAGAA +
Preference number: 2 (lower is better)
Translates to: KTLLGSTLLVYFLQHMSGQVSLS*HECKTE
Trigger: TTCTGTTTTACATTCATGCCAACTCAGGGAAACTTG...GCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp GCAAGACACAAAGGTCAGGAACTCTTCTTGATGTTACTTGATGTTACCAAACAATCTCATTCAATGCCATaGAACAGGGGCTTCACTGAA +
Preference number: 2 (lower is better)
Translates to: ARHKGQELFLMLLDVTKQSHSMP*NRGFTE
Trigger: TTCAGTGAAGCCCCTGTTGCATGGCATTGAATGAGA...TTGTTTGGTAACATCAAGTAACATCAAGAAGAGTTCCTGACCTTTGTGTCTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp CCTGAAAACAGAATCCAGCTTGATTTTTATGTGTGCTCACCAGAGTGCCTAACATCATTAAAAAGACCCTaGCAGAGGAAGAAATGGGAA +
Preference number: 2 (lower is better)
Translates to: PENRIQLDFYVCSPECLTSLKRP*QRKKWE
Trigger: TTCCCATTTCTTCCTCTGCCAGGGTCTTTTTAATGA...TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAGCTGGATTCTGTTTTCAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp ATGTTACTTTTTACTAAATGGAAATCAACTGAACTAGTTCTCATGGTGCCTGCTAAACTGAAGTCATCATaGGTGCCTGGGGTCCCATCA +
Preference number: 2 (lower is better)
Translates to: MLLFTKWKSTELVLMVPAKLKSS*VPGVPS
Trigger: TGATGGGACCCCAGGCACCCATGATGACTTCAGTTT...AGCAGGCACCATGAGAACTAGTTCAGTTGATTTCCATTTAGTAAAAAGTAACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CAA 90 bp ACACACACACACACACACACACTTCACAGATATCCTAATACCAGTTaGACACAGTTTCACATTTCCTTACACTACAAAGTTAAAGGCTGG +
Preference number: 2 (lower is better)
Translates to: THTHTHTLHRYPNTS*TQFHISLHYKVKGW
Trigger: CCAGCCTTTAACTTTGTAGTGTAAGGAAATGTGAAACTGTGTCAAACTGGTATTAGGATATCTGTGAAGTGTGTGTGTGTGTGTGTGTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 90 bp CTAAGAAGCTTCAAAGTTCAATTCTGTGACATGCTACGTGCTCATTaGGGGTCACAAATACACACAGCTTTGATTGCTGTTGAACTTGTA +
Preference number: 2 (lower is better)
Translates to: LRSFKVQFCDMLRAH*GSQIHTALIAVELV
Trigger: TACAAGTTCAACAGCAATCAAAGCTGTGTGTATTTGTGACCCCAAATGAGCACGTAGCATGTCACAGAATTGAACTTTGAAGCTTCTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR-3UTR GCA 90 bp GTGGCTCTCATAGATATGTACTATGTTTCTTGTATTCATACAAGGAAATGTCTCTCAACACATAACCAGTaGCCAGTCAGCAATTGCTGG +
Preference number: 2 (lower is better)
Translates to: VALIDMYYVSCIHTRKCLSTHNQ*PVSNCW
Trigger: CCAGCAATTGCTGACTGGGCACTGGTTATGTGTTGA...GAGACATTTCCTTGTATGAATACAAGAAACATAGTACATATCTATGAGAGCCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CCA 90 bp CTTTTCTCAGTGGCAACAGTGATAACCTTGACCTTCAGATTCATTAAAAAGACCAAGAAATGGGAAGCCTaGAGTCCAACCTTATCAAGT +
Preference number: 2 (lower is better)
Translates to: LFSVATVITLTFRFIKKTKKWEA*SPTLSS
Trigger: ACTTGATAAGGTTGGACTCCAGGCTTCCCATTTCTT...GGTCTTTTTAATGAATCTGAAGGTCAAGGTTATCACTGTTGCCACTGAGAAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CAA 90 bp AACAACCAGTTTTCTAGAAACAGAAGACCTCTTCTATATGTACAGTaGAATGGTACTGCCTATGAAATAGCCACTCATTGGCTAGGCAAT +
Preference number: 2 (lower is better)
Translates to: NNQFSRNRRPLLYVQ*NGTAYEIATHWLGN
Trigger: ATTGCCTAGCCAATGAGTGGCTATTTCATAGGCAGTACCATTCAACTGTACATATAGAAGAGGTCTTCTGTTTCTAGAAAACTGGTTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR TCA 90 bp GTGGCTCTCATAGATATGTACTATGTTTCTTGTATTCATACAAGGAAATGTCTCTATTCCATGTTCAGCTaGCAACTCTGGATACTGTGC +
Preference number: 2 (lower is better)
Translates to: VALIDMYYVSCIHTRKCLYSMFS*QLWILC
Trigger: GCACAGTATCCAGAGTTGTCAGCTGAACATGGAATA...GAGACATTTCCTTGTATGAATACAAGAAACATAGTACATATCTATGAGAGCCAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR TCA 90 bp AACAGAAGACCTCTTCTATATGTACAGTTGAATGGTACTGCCTATGAAATAGCCGATTTCATGGAGCAGTaGATGGTATCAACACATAAC +
Preference number: 2 (lower is better)
Translates to: NRRPLLYVQLNGTAYEIADFMEQ*MVSTHN
Trigger: GTTATGTGTTGATACCATTCACTGCTCCATGAAATC...GGCTATTTCATAGGCAGTACCATTCAACTGTACATATAGAAGAGGTCTTCTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR GCA 90 bp CCTGAAAACAGAATCCAGCTTGATTTTTATGTGTGCTCACCAGAGTGCCTAACAGGCCAATTTATCCTCTaGCTATCATGTTACTTTTTA +
Preference number: 2 (lower is better)
Translates to: PENRIQLDFYVCSPECLTGQFIL*LSCYFL
Trigger: TAAAAAGTAACATGATAGGCAGAGGATAAATTGGCC...TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAGCTGGATTCTGTTTTCAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp GTGGCTCTCATAGATATGTACTATGTTTCTTGTATTCATACAAGGAAATGTCTCGAAATTCTACCTGTGTaGCCTGCCAAGAATGTAGGT +
Preference number: 2 (lower is better)
Translates to: VALIDMYYVSCIHTRKCLEILPV*PAKNVG
Trigger: ACCTACATTCTTGGCAGGCCACACAGGTAGAATTTC...GAGACATTTCCTTGTATGAATACAAGAAACATAGTACATATCTATGAGAGCCAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR TCA 90 bp GCAAGACACAAAGGTCAGGAACTCTTCTTGATGTTACTTGATGTTACCAAACAATTCACTGAAAAGAAATaGTCTCATGACCTCAATAGG +
Preference number: 2 (lower is better)
Translates to: ARHKGQELFLMLLDVTKQFTEKK*SHDLNR
Trigger: CCTATTGAGGTCATGAGATCATTTCTTTTCAGTGAA...TTGTTTGGTAACATCAAGTAACATCAAGAAGAGTTCCTGACCTTTGTGTCTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR GCA 90 bp GTCACATGTAACTGGAATTACAGAAGATTATGTGTGTGGGTACTGGAAATCAAACTTGATTTTTATGTGTaGTCACCAGAGTGCCTAACA +
Preference number: 2 (lower is better)
Translates to: VTCNWNYRRLCVWVLEIKLDFYV*SPECLT
Trigger: TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAG...TTTGATTTCCAGTACCCACACACATAATCTTCTGTAATTCCAGTTACATGTGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR-3UTR CCA 90 bp GTCTATTTTCTCCAACATATGTCTGGCCCTACTAATGTAGAACATGCTGTTAGACAAGTTTCCCTGAGTTaGCATGAATGTAAAACAGAA +
Preference number: 2 (lower is better)
Translates to: VYFLQHMSGPTNVEHAVRQVSLS*HECKTE
Trigger: TTCTGTTTTACATTCATGCCAACTCAGGGAAACTTG...TCTAACAGCATGTTCTACATTAGTAGGGCCAGACATATGTTGGAGAAAATAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CCA 90 bp GTCACATGTAACTGGAATTACAGAAGATTATGTGTGTGGGTACTGGAAATCAAACAAGTTTCCCTGAGTTaGCATGAATGTAAAACAGAA +
Preference number: 2 (lower is better)
Translates to: VTCNWNYRRLCVWVLEIKQVSLS*HECKTE
Trigger: TTCTGTTTTACATTCATGCCAACTCAGGGAAACTTG...TTTGATTTCCAGTACCCACACACATAATCTTCTGTAATTCCAGTTACATGTGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR-3UTR CCA 90 bp ATGTTACTTTTTACTAAATGGAAATCAACTGAACTAGTTCTCATGGTGCCTGCTTCATTAAAAAGACCCTaGCAGAGGAAGAAATGGGAA +
Preference number: 2 (lower is better)
Translates to: MLLFTKWKSTELVLMVPASLKRP*QRKKWE
Trigger: TTCCCATTTCTTCCTCTGCCAGGGTCTTTTTAATGA...AGCAGGCACCATGAGAACTAGTTCAGTTGATTTCCATTTAGTAAAAAGTAACAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 72 bp CTCGGAGCTGGCTGCGCTGCCCCACTGTGGGCGGGGTaGTCACTTGTCGGCTTTGGACACAGGTACACTCTG +
Preference number: 3 (lower is better)
Translates to: LGAGCAAPLWAG*SLVGFGHRYTL
Trigger: CAGAGTGTACCTGTGTCCAAAGCCGACAAGTGATCACCCCGCCCACAGTGGGGCAGCGCAGCCAGCTCCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR CCA 72 bp GCTGGGCTGGCCCACTTGCTCACTCACAGTGCTCAGTaGGAATTCCCTGCACCTCCGCCTCTGCAATCCGTC +
Preference number: 3 (lower is better)
Translates to: AGLAHLLTHSAQ*EFPAPPPLQSV
Trigger: GACGGATTGCAGAGGCGGAGGTGCAGGGAATTCCCACTGAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR GCA 72 bp CAGCTTTGCTGGGCTGGCCCACTTGCTCACTCACAGTaGTCAGTGGGAATTCCCTGCACCTCCGCCTCTGCA +
Preference number: 3 (lower is better)
Translates to: QLCWAGPLAHSQ*SVGIPCTSASA
Trigger: TGCAGAGGCGGAGGTGCAGGGAATTCCCACTGAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR CCA 72 bp GCTTGCCTTGCTACAGAGCTCATGGGAGAGTTCCCATaGGGGCTTTGGGTCCCGCCACACTGTGGTGATGTT +
Preference number: 3 (lower is better)
Translates to: ACLATELMGEFP*GLWVPPHCGDV
Trigger: AACATCACCACAGTGTGGCGGGACCCAAAGCCCCCATGGGAACTCTCCCATGAGCTCTGTAGCAAGGCAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp GTTCCCATGGGGGCTTTGGGTCCCGCCACACTGTGGTaGTGTTCCTTGGTGCACACAGGGTTCTACAAAGCA +
Preference number: 3 (lower is better)
Translates to: VPMGALGPATLW*CSLVHTGFYKA
Trigger: TGCTTTGTAGAACCCTGTGTGCACCAAGGAACATCACCACAGTGTGGCGGGACCCAAAGCCCCCATGGGAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 72 bp CAGGGATGTTACAAAGCAGCATCGGGGCTCTCGTCCTaGCCAGGGTCTGCAGAGGAACTTACTGCTTCTGAG +
Preference number: 3 (lower is better)
Translates to: QGCYKAASGLSS*PGSAEELTASE
Trigger: CTCAGAAGCAGTAAGTTCCTCTGCAGACCCTGGGCAGGACGAGAGCCCCGATGCTGCTTTGTAACATCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR CCA 72 bp CCCTTTTGCAGAGCAGTTTCTTCATGGACTTCCCCCTaGGTGCTGAAGGCTGGGCATGATGTAGTCCGGGAG +
Preference number: 3 (lower is better)
Translates to: PFCRAVSSWTSP*VLKAGHDVVRE
Trigger: CTCCCGGACTACATCATGCCCAGCCTTCAGCACCCAGGGGGAAGTCCATGAAGAAACTGCTCTGCAAAAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR CCA 72 bp CACTTCAGTGTGTACTCCAGCCTCGGCCCAGTTCTCTaGACTCTGGCAGACTCCAGCTGTCTGAAAACCCTG +
Preference number: 3 (lower is better)
Translates to: HFSVYSSLGPVL*TLADSSCLKTL
Trigger: CAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGGAGTACACACTGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 72 bp GAGGCCAGCCGCCAAGCCAAAGTAGACAAAACGAAATaGCGTCACGTTGTACTCCCAGCAAGAGCCCTGCAC +
Preference number: 3 (lower is better)
Translates to: EASRQAKVDKTK*RHVVLPARALH
Trigger: GTGCAGGGCTCTTGCTGGGAGTACAACGTGACGTCATTTCGTTTTGTCTACTTTGGCTTGGCGGCTGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR TCA 72 bp TCAAACCCAGCCCCTCTGGAGGAGCATTCAATGCTCTaGACGGTGAGCCATCTCTCCAGCCCCATAAACAGG +
Preference number: 3 (lower is better)
Translates to: SNPAPLEEHSML*TVSHLSSPINR
Trigger: CCTGTTTATGGGGCTGGAGAGATGGCTCACCGTTCAGAGCATTGAATGCTCCTCCAGAGGGGCTGGGTTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR GCA 72 bp CCACTTGCTCACTCACAGTGCTCAGTGGGAATTCCCTaGACCTCCGCCTCTGCAATCCGTCCTCTTTGTACT +
Preference number: 3 (lower is better)
Translates to: PLAHSQCSVGIP*TSASAIRPLCT
Trigger: AGTACAAAGAGGACGGATTGCAGAGGCGGAGGTGCAGGGAATTCCCACTGAGCACTGTGAGTGAGCAAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR GCA 72 bp ACACACACAGCTAGCACCTTAGGCAAGTGCTTGCCTTaGTACAGAGCTCATGGGAGAGTTCCCATGGGGGCT +
Preference number: 3 (lower is better)
Translates to: THTASTLGKCLP*YRAHGRVPMGA
Trigger: AGCCCCCATGGGAACTCTCCCATGAGCTCTGTAGCAAGGCAAGCACTTGCCTAAGGTGCTAGCTGTGTGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 72 bp AACACACACATGATGGCTTCCGGTGTGCAGACGGGCTaGCCTAGGGATGCTGGTTTCAGTACAGTGATGAGG +
Preference number: 3 (lower is better)
Translates to: NTHMMASGVQTG*PRDAGFSTVMR
Trigger: CCTCATCACTGTACTGAAACCAGCATCCCTAGGCCAGCCCGTCTGCACACCGGAAGCCATCATGTGTGTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CAA 90 bp TCCAGCCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCGCCCTGCACAATTTTTaGTCTCGGGAGAGGTTTTTC +
Preference number: 3 (lower is better)
Translates to: SSLGPVLWTLADSSCLKTALHNF*SRERFF
Trigger: GAAAAACCTCTCCCGAGACAAAAAATTGTGCAGGGC...GGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 72 bp ATTCTACCTGTGTGGCCTGCCAAGAATGTAGGTGTCTaGATCATGGCCTGTCTGCCAGCCCCCTCTCTTCCA +
Preference number: 3 (lower is better)
Translates to: ILPVWPAKNVGV*IMACLPAPSLP
Trigger: TGGAAGAGAGGGGGCTGGCAGACAGGCCATGATTCAGACACCTACATTCTTGGCAGGCCACACAGGTAGAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 72 bp CCCGGATATGTCTGTGTGGTGCATGGGAATCCCTTTTaGAGAGCAGTTTCTTCATGGACTTCCCCCTGGGTG +
Preference number: 3 (lower is better)
Translates to: PGYVCVVHGNPF*RAVSSWTSPWV
Trigger: CACCCAGGGGGAAGTCCATGAAGAAACTGCTCTGCAAAAGGGATTCCCATGCACCACACAGACATATCCGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR CCA 72 bp TCATGGGTGCTGAGCATTGGGAGACCATTCTGCCAATaGTCGCCACACCAAATGCTCTTTCCCACCATCCCT +
Preference number: 3 (lower is better)
Translates to: SWVLSIGRPFCQ*SPHQMLFPTIP
Trigger: AGGGATGGTGGGAAAGAGCATTTGGTGTGGCGACCATTGGCAGAATGGTCTCCCAATGCTCAGCACCCATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp GAGAACATGTCATATGCAGGGTCCCTCGCTCAGTCCTaGAGCACTGAAGGGAAGCATTGCTTCCATGCTCCT +
Preference number: 3 (lower is better)
Translates to: ENMSYAGSLAQS*STEGKHCFHAP
Trigger: AGGAGCATGGAAGCAATGCTTCCCTTCAGTGCTTCAGGACTGAGCGAGGGACCCTGCATATGACATGTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 72 bp GAAATGTCATGGGTGCTGAGCATTGGGAGACCATTCTaGCAATGGTCGCCACACCAAATGCTCTTTCCCACC +
Preference number: 3 (lower is better)
Translates to: EMSWVLSIGRPF*QWSPHQMLFPT
Trigger: GGTGGGAAAGAGCATTTGGTGTGGCGACCATTGGCAGAATGGTCTCCCAATGCTCAGCACCCATGACATTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 72 bp CACCTGCCAGCCACATCCTTCCACACCGCATTAGACTaGTCCCAAGTCTGGAAAACAGAATTAGCGTGCTTG +
Preference number: 3 (lower is better)
Translates to: HLPATSFHTALD*SQVWKTELACL
Trigger: CAAGCACGCTAATTCTGTTTTCCAGACTTGGGAGCAGTCTAATGCGGTGTGGAAGGATGTGGCTGGCAGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 72 bp GCTCCTAACGCAGGAAATGTCATGGGTGCTGAGCATTaGGAGACCATTCTGCCAATGGTCGCCACACCAAAT +
Preference number: 3 (lower is better)
Translates to: APNAGNVMGAEH*ETILPMVATPN
Trigger: ATTTGGTGTGGCGACCATTGGCAGAATGGTCTCCCAATGCTCAGCACCCATGACATTTCCTGCGTTAGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp CCATGGACCTCAGGCTTCTACCAAACGGGAGCAGGAACATTAAGTGAACCTAGCAGGCTGTCAGTCTTGTaGAGGTATCCAGCCCTCATC +
Preference number: 3 (lower is better)
Translates to: PWTSGFYQTGAGTLSEPSRLSVL*RYPALI
Trigger: GATGAGGGCTGGATACCTCAACAAGACTGACAGCCT...GCTAGGTTCACTTAATGTTCCTGCTCCCGTTTGGTAGAAGCCTGAGGTCCATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp TCCAGCCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCTGGGCTCCACATTGCTaGTCTATTTTCTCCAACATA +
Preference number: 3 (lower is better)
Translates to: SSLGPVLWTLADSSCLKTWAPHC*SIFSNI
Trigger: TATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCA...GGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CAA 90 bp AGGCTAGGGTGCTGCTCGGGGAGAGAGAACATGTCATATGCAGGGTCCCTCGCTTCTAAAAGCTCTGACTaGCAAATGCAAAGTCATGGT +
Preference number: 3 (lower is better)
Translates to: RLGCCSGRENMSYAGSLASKSSD*QMQSHG
Trigger: ACCATGACTTTGCATTTGCAAGTCAGAGCTTTTAGA...AGCGAGGGACCCTGCATATGACATGTTCTCTCTCCCCGAGCAGCACCCTAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp CCCTGGAGAAAAGAGGGGAAAGGCTGTCAGTCTTGTTaGGGTATCCAGCCCTCATCAACAGTGGCTGTGTAT +
Preference number: 3 (lower is better)
Translates to: PWRKEGKGCQSC*GIQPSSTVAVY
Trigger: ATACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCCCCTCTTTTCTCCAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp GGCCCTACTAATGTAGAACATGCTGTTAGAGGGCACTaGAGACAGAGGGGTAAAGGAGACCACGTCTTCTCC +
Preference number: 3 (lower is better)
Translates to: GPTNVEHAVRGH*RQRGKGDHVFS
Trigger: GGAGAAGACGTGGTCTCCTTTACCCCTCTGTCTTCAGTGCCCTCTAACAGCATGTTCTACATTAGTAGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR GCA 72 bp CAAAACAAGAATCCTTTCCAGAGAAGGCTAGGGTGCTaGTCGGGGAGAGAGAACATGTCATATGCAGGGTCC +
Preference number: 3 (lower is better)
Translates to: QNKNPFQRRLGC*SGRENMSYAGS
Trigger: GGACCCTGCATATGACATGTTCTCTCTCCCCGAGCAGCACCCTAGCCTTCTCTGGAAAGGATTCTTGTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp ATGCTAATGATATGTGTGGTCATAGCCTTTCCCATGGCTAACCATGGACCTCAGCGAAATGACGTCACGTaGTACTCCCAGCAAGAGCCC +
Preference number: 3 (lower is better)
Translates to: MLMICVVIAFPMANHGPQRNDVT*YSQQEP
Trigger: GGGCTCTTGCTGGGAGTACAACGTGACGTCATTTCG...CTGAGGTCCATGGTTAGCCATGGGAAAGGCTATGACCACACATATCATTAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR-3UTR CAA 90 bp CTAATGATATGTGTGGTCATAGCCTTTCCCATGGCTAACCATGGACCTCAGGCTGAAAGGCTGTCAGTCTaGTTGAGGTATCCAGCCCTC +
Preference number: 3 (lower is better)
Translates to: LMICVVIAFPMANHGPQAERLSV*LRYPAL
Trigger: GAGGGCTGGATACCTCAACAAGACTGACAGCCTTTC...AGCCTGAGGTCCATGGTTAGCCATGGGAAAGGCTATGACCACACATATCATTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp AACATGCTGTTAGAGGGCACTGAAGACAGAGGGGTAAAGGAGACCACGTCTTCTCCAGCCAGACATGGGTaGAAGTATGTGATCCCATCT +
Preference number: 3 (lower is better)
Translates to: NMLLEGTEDRGVKETTSSPARHG*KYVIPS
Trigger: AGATGGGATCACATACTTCAACCCATGTCTGGCTGG...AGAAGACGTGGTCTCCTTTACCCCTCTGTCTTCAGTGCCCTCTAACAGCATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CAA 90 bp CCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTACCCAGCCAGACATGGGTaGAAGTATGTGATCCCATCT +
Preference number: 3 (lower is better)
Translates to: PAGLHIACLFSPTYVWPYPARHG*KYVIPS
Trigger: AGATGGGATCACATACTTCAACCCATGTCTGGCTGG...GTAGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 72 bp TTTTCAGAGGTACCTGGAGGGCTATTTGGAGCCTCATaGACAAGGGAAACTGAAGTCATCATGGGTGCCTGG +
Preference number: 3 (lower is better)
Translates to: FSEVPGGLFGAS*TRETEVIMGAW
Trigger: CCAGGCACCCATGATGACTTCAGTTTCCCTTGTTCATGAGGCTCCAAATAGCCCTCCAGGTACCTCTGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR GCA 72 bp GACTTCTGTCCCTCTGCAATAGGCTCTCTCAAGCACTaGCTGGAGCTGTTCTCACCTGAGAGTCACTATAAT +
Preference number: 3 (lower is better)
Translates to: DFCPSAIGSLKH*LELFSPESHYN
Trigger: ATTATAGTGACTCTCAGGTGAGAACAGCTCCAGGCAGTGCTTGAGAGAGCCTATTGCAGAGGGACAGAAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR-3UTR CAA 90 bp AAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCGTCAATCTCCAGAGCTaGCCAGCTATGTCATTGGGA +
Preference number: 3 (lower is better)
Translates to: KPCWAPHCLSIFSNICLAVNLQS*PAMSLG
Trigger: TCCCAATGACATAGCTGGCAAGCTCTGGAGATTGAC...GGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CAA 90 bp CCTCAGCAAGCTGGTGACCTTCAGGTGAAGGGATGGAGTCGTCATCACTTCAGTTCCAGTAATCACACATaGTGTCTACTGAGCAAGACA +
Preference number: 3 (lower is better)
Translates to: PQQAGDLQVKGWSRHHFSSSNHT*CLLSKT
Trigger: TGTCTTGCTCAGTAGACACAATGTGTGATTACTGGA...ACTGAAGTGATGACGACTCCATCCCTTCACCTGAAGGTCACCAGCTTGCTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CAA 90 bp ACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTCTGCTGGGCTCCACATaGCTTGTCTATTTTCTCCAA +
Preference number: 3 (lower is better)
Translates to: TLLGSTLLVYFLQHMSGPLLGST*LVYFLQ
Trigger: TTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAG...AGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 72 bp TCTGACCTCAGCCTTCCAAAGGATTTCATGGAGCAGTaGATGGTATCAACACATAACCAGTGCCCAGTCAGC +
Preference number: 3 (lower is better)
Translates to: SDLSLPKDFMEQ*MVSTHNQCPVS
Trigger: GCTGACTGGGCACTGGTTATGTGTTGATACCATTCACTGCTCCATGAAATCCTTTGGAAGGCTGAGGTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp CTCGGGAGAATCCCCAGGTTTCCAAACCCAAAGCTCTaGAACACTGACTTCAAAGAGGAACATGCCTCTACA +
Preference number: 3 (lower is better)
Translates to: LGRIPRFPNPKL*NTDFKEEHAST
Trigger: TGTAGAGGCATGTTCCTCTTTGAAGTCAGTGTTTCAGAGCTTTGGGTTTGGAAACCTGGGGATTCTCCCGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 72 bp TGCCGTATTCAACTCAACCAACAAAATCCATCTGTCTaGCTTCTCCGGGCTTCAGCAGGGATGTTACAAAGC +
Preference number: 3 (lower is better)
Translates to: CRIQLNQQNPSV*LLRASAGMLQS
Trigger: GCTTTGTAACATCCCTGCTGAAGCCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR GCA 72 bp AAACAAAACAAGAATCCTTTCCAGAGAAGGCTAGGGTaGTGCTCGGGGAGAGAGAACATGTCATATGCAGGG +
Preference number: 3 (lower is better)
Translates to: KQNKNPFQRRLG*CSGRENMSYAG
Trigger: CCCTGCATATGACATGTTCTCTCTCCCCGAGCAGCACCCTAGCCTTCTCTGGAAAGGATTCTTGTTTTGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 72 bp GCTGAGATAATGCTGTCAATGGACCCAAGGTGCCTTTaGGAAGGGAATTATCCTGTCTCAGAGCCACTTAAG +
Preference number: 3 (lower is better)
Translates to: AEIMLSMDPRCL*EGNYPVSEPLK
Trigger: CTTAAGTGGCTCTGAGACAGGATAATTCCCTTCCCAAAGGCACCTTGGGTCCATTGACAGCATTATCTCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 72 bp ACATCCTTCCACACCGCATTAGACTGCTCCCAAGTCTaGAAAACAGAATTAGCGTGCTTGGCTTCTAGGCTA +
Preference number: 3 (lower is better)
Translates to: TSFHTALDCSQV*KTELACLASRL
Trigger: TAGCCTAGAAGCCAAGCACGCTAATTCTGTTTTCCAGACTTGGGAGCAGTCTAATGCGGTGTGGAAGGATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp GTCCCGCCACACTGTGGTGATGTTCCTTGGTGCACACAGGGTTCTACAAAGCAGGGAAATGTCTCTACTTaGAAGAATGTCTCTAAAACC +
Preference number: 3 (lower is better)
Translates to: VPPHCGDVPWCTQGSTKQGNVST*KNVSKT
Trigger: GGTTTTAGAGACATTCTTCAAAGTAGAGACATTTCC...CTGCTTTGTAGAACCCTGTGTGCACCAAGGAACATCACCACAGTGTGGCGGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp AAAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCGTCAATCTCCAGAGCTaGCCAGCTATGTCATTGGGA +
Preference number: 3 (lower is better)
Translates to: KTLLGSTLLVYFLQHMSGVNLQS*PAMSLG
Trigger: TCCCAATGACATAGCTGGCAAGCTCTGGAGATTGAC...GCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CAA 90 bp GTGAAGGGATGGAGTCGTCATCACTTCAGTGTGTACTCCAGCCTCGGCCCAGTTAAAACAGAATCCAGCTaGATTTTTATGTGTGCTCAC +
Preference number: 3 (lower is better)
Translates to: VKGWSRHHFSVYSSLGPVKTESS*IFMCAH
Trigger: GTGAGCACACATAAAAATCAAGCTGGATTCTGTTTT...AACTGGGCCGAGGCTGGAGTACACACTGAAGTGATGACGACTCCATCCCTTCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CAA 90 bp TTCTGGTTTCTATCACTACATAGAATCCTCAGCATGTACCTCTGCAGCAAGTTATTCCTCCCTAGGCTCTaGGGAGTCAATGAGCTGCAC +
Preference number: 3 (lower is better)
Translates to: FWFLSLHRILSMYLCSKLFLPRL*GVNELH
Trigger: GTGCAGCTCATTGACTCCCAAGAGCCTAGGGAGGAA...TAACTTGCTGCAGAGGTACATGCTGAGGATTCTATGTAGTGATAGAAACCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp ACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTTTGCCAGCTATGTCATaGGGAACCAGCAATAGTAAT +
Preference number: 3 (lower is better)
Translates to: TLLGSTLLVYFLQHMSGPLPAMS*GTSNSN
Trigger: ATTACTATTGCTGGTTCCCAATGACATAGCTGGCAA...AGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CAA 90 bp CCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTACGGTCAGGAACTCTTCTaGATGTTACTTGATGTTACC +
Preference number: 3 (lower is better)
Translates to: PAGLHIACLFSPTYVWPYGQELF*MLLDVT
Trigger: GGTAACATCAAGTAACATCAAGAAGAGTTCCTGACC...GTAGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 72 bp CTGAGTACAAAGATGCAGTTAACCGTCACAGTCACTTaGGGTGACAGATGGGGTCTGTGGCTTGGAGTATAT +
Preference number: 3 (lower is better)
Translates to: LSTKMQLTVTVT*GDRWGLWLGVY
Trigger: ATATACTCCAAGCCACAGACCCCATCTGTCACCTCAAGTGACTGTGACGGTTAACTGCATCTTTGTACTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp CTGGAGCTGTTCTCACCTGAGAGTCACTATAATGGCTaGTGGTTGGGCACATGCTGTGATGAAGGTAACTAT +
Preference number: 3 (lower is better)
Translates to: LELFSPESHYNG*WLGTCCDEGNY
Trigger: ATAGTTACCTTCATCACAGCATGTGCCCAACCATCAGCCATTATAGTGACTCTCAGGTGAGAACAGCTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR GCA 72 bp AATGAAGCTGAGATAATGCTGTCAATGGACCCAAGGTaGCTTTGGGAAGGGAATTATCCTGTCTCAGAGCCA +
Preference number: 3 (lower is better)
Translates to: NEAEIMLSMDPR*LWEGNYPVSEP
Trigger: TGGCTCTGAGACAGGATAATTCCCTTCCCAAAGGCACCTTGGGTCCATTGACAGCATTATCTCAGCTTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 72 bp TTAGACTGCTCCCAAGTCTGGAAAACAGAATTAGCGTaGTTGGCTTCTAGGCTATTCTGGGGCTTGCAACAT +
Preference number: 3 (lower is better)
Translates to: LDCSQVWKTELA*LASRLFWGLQH
Trigger: ATGTTGCAAGCCCCAGAATAGCCTAGAAGCCAAGCACGCTAATTCTGTTTTCCAGACTTGGGAGCAGTCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 72 bp AGAAAGTTAACTGACGGGCTTATGAATAATGGCCATTaGCCATCTTCACAACCACCACTTAGCAGACCAGCC +
Preference number: 3 (lower is better)
Translates to: RKLTDGLMNNGH*PSSQPPLSRPA
Trigger: GGCTGGTCTGCTAAGTGGTGGTTGTGAAGATGGGCAATGGCCATTATTCATAAGCCCGTCAGTTAACTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CAA 90 bp TGCTGGTTTCAGTACAGTGATGAGGGACGTTCCGTTGGCTATTCCAGTTTACCCATGCTAACAGCCAAATaGGGCTCAGTAAAGAATAGA +
Preference number: 3 (lower is better)
Translates to: CWFQYSDEGRSVGYSSLPMLTAK*GSVKNR
Trigger: TCTATTCTTTACTGAGCCCAATTTGGCTGTTAGCAT...GGGTAAACTGGAATAGCCAACGGAACGTCCCTCATCACTGTACTGAAACCAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CAA 90 bp AAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCTTGCCAGCTATGTCATaGGGAACCAGCAATAGTAAT +
Preference number: 3 (lower is better)
Translates to: KPCWAPHCLSIFSNICLALPAMS*GTSNSN
Trigger: ATTACTATTGCTGGTTCCCAATGACATAGCTGGCAA...GGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 72 bp CAGCATGTACCTCTGCAGCAAGTTACTGTCACGTTCTaGTCTCTAGGACACACACACATACACACACATACA +
Preference number: 3 (lower is better)
Translates to: QHVPLQQVTVTF*SLGHTHIHTHT
Trigger: TGTATGTGTGTGTATGTGTGTGTGTCCTAGAGATCAGAACGTGACAGTAACTTGCTGCAGAGGTACATGCTG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp AGATTAACATTTGGGTTTGGGGTAGAGGTATATAGCTaGAGACAACTGCCCACCGTCGAGTCTTACTCCTCA +
Preference number: 3 (lower is better)
Translates to: RLTFGFGVEVYS*RQLPTVESYSS
Trigger: TGAGGAGTAAGACTCGACGGTGGGCAGTTGTCTTCAGCTATATACCTCTACCCCAAACCCAAATGTTAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp GCCAGCCAGACATGGGTTGAAGTATGTGATCCCATCTaGTCCACAGACTGGCTCATATTCGTGTATTTTACA +
Preference number: 3 (lower is better)
Translates to: ASQTWVEVCDPI*STDWLIFVYFT
Trigger: TGTAAAATACACGAATATGAGCCAGTCTGTGGATCAGATGGGATCACATACTTCAACCCATGTCTGGCTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR GCA 72 bp CTGGTTGAAACACAACAGGAAGTCTGGGACAGACAATaGCAGCAGCATTTCTTTGCCTTTGACAGTAGAGTA +
Preference number: 3 (lower is better)
Translates to: LVETQQEVWDRQ*QQHFFAFDSRV
Trigger: TACTCTACTGTCAAAGGCAAAGAAATGCTGCTGGCATTGTCTGTCCCAGACTTCCTGTTGTGTTTCAACCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 72 bp ACCTCAGCCTTCCAAAGGATTTCATGGAGCAGTGAATaGTATCAACACATAACCAGTGCCCAGTCAGCAATT +
Preference number: 3 (lower is better)
Translates to: TSAFQRISWSSE*YQHITSAQSAI
Trigger: AATTGCTGACTGGGCACTGGTTATGTGTTGATACCATTCACTGCTCCATGAAATCCTTTGGAAGGCTGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 72 bp GTAACTGGAATTACAGAAGATTATGTGTGTGGGTACTaGAAATCAAACCCAGCCCCTCTGGAGGAGCATTCA +
Preference number: 3 (lower is better)
Translates to: VTGITEDYVCGY*KSNPAPLEEHS
Trigger: TGAATGCTCCTCCAGAGGGGCTGGGTTTGATTTCCAGTACCCACACACATAATCTTCTGTAATTCCAGTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR-3UTR CAA 90 bp AACAGAAGACCTCTTCTATATGTACAGTTGAATGGTACTGCCTATGAAATAGCCGGACCCAAGGTGCCTTaGGGAAGGGAATTATCCTGT +
Preference number: 3 (lower is better)
Translates to: NRRPLLYVQLNGTAYEIAGPKVP*GRELSC
Trigger: ACAGGATAATTCCCTTCCCAAAGGCACCTTGGGTCC...GGCTATTTCATAGGCAGTACCATTCAACTGTACATATAGAAGAGGTCTTCTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp TACAAAGATGCAGTTAACCGTCACAGTCACTTGAGGTaGCAGATGGGGTCTGTGGCTTGGAGTATATTTTCT +
Preference number: 3 (lower is better)
Translates to: YKDAVNRHSHLR*QMGSVAWSIFS
Trigger: AGAAAATATACTCCAAGCCACAGACCCCATCTGTCACCTCAAGTGACTGTGACGGTTAACTGCATCTTTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp GTTCCTTGGTGCACACAGGGTTCTACAAAGCAGCCTTaGAAACAAAACACACAAGACACTTTCTGGCTAGAA +
Preference number: 3 (lower is better)
Translates to: VPWCTQGSTKQP*KQNTQDTFWLE
Trigger: TTCTAGCCAGAAAGTGTCTTGTGTGTTTTGTTTTCAAGGCTGCTTTGTAGAACCCTGTGTGCACCAAGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp TCAATGCCATGCAACAGGGGCTTCACTGAAAAGAAATaGTCTCATGACCTCAATAGGTCAATCTCCAGAGCT +
Preference number: 3 (lower is better)
Translates to: SMPCNRGFTEKK*SHDLNRSISRA
Trigger: AGCTCTGGAGATTGACCTATTGAGGTCATGAGATCATTTCTTTTCAGTGAAGCCCCTGTTGCATGGCATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 72 bp TGTATATATGTGCACCTTTTGCATGTCTGGTGCCTGTaGTGGGGACAAGAAGGTGTCACATGTAACTGGAAT +
Preference number: 3 (lower is better)
Translates to: CIYVHLLHVWCL*WGQEGVTCNWN
Trigger: ATTCCAGTTACATGTGACACCTTCTTGTCCCCATCACAGGCACCAGACATGCAAAAGGTGCACATATATACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR CCA 72 bp AGCCAACAAGGGACACCAAGTCCCAAGAGTACACTGTaGGCTAATCTTCACTACTTTATGAAAACCTCTCAT +
Preference number: 3 (lower is better)
Translates to: SQQGTPSPKSTL*ANLHYFMKTSH
Trigger: ATGAGAGGTTTTCATAAAGTAGTGAAGATTAGCCCACAGTGTACTCTTGGGACTTGGTGTCCCTTGTTGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 72 bp AATAGGTCAATCTCCAGAGCTTGCCAGCTATGTCATTaGGAACCAGCAATAGTAATATCCATGTTGCCCTCT +
Preference number: 3 (lower is better)
Translates to: NRSISRACQLCH*EPAIVISMLPS
Trigger: AGAGGGCAACATGGATATTACTATTGCTGGTTCCCAATGACATAGCTGGCAAGCTCTGGAGATTGACCTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CCA 72 bp TGTTCTCACCTGAGAGTCACTATAATGGCTGATGGTTaGGCACATGCTGTGATGAAGGTAACTATGAAAAGG +
Preference number: 3 (lower is better)
Translates to: CSHLRVTIMADG*AHAVMKVTMKR
Trigger: CCTTTTCATAGTTACCTTCATCACAGCATGTGCCCAACCATCAGCCATTATAGTGACTCTCAGGTGAGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR TCA 72 bp AGGAAGGATAGAAGAACACATATACAAAGGGCACCGTaGAATGATGCTAGCTTTGAGAGTGCAGGATTCAGT +
Preference number: 3 (lower is better)
Translates to: RKDRRTHIQRAP*NDASFESAGFS
Trigger: ACTGAATCCTGCACTCTCAAAGCTAGCATCATTTCACGGTGCCCTTTGTATATGTGTTCTTCTATCCTTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp ACCAGAGCCCAAACCCTCTGGAGAGCAGTCTTTAATTaGTATATAATGCAGGACTTTATTCCCTCAGGACTT +
Preference number: 3 (lower is better)
Translates to: TRAQTLWRAVFN*YIMQDFIPSGL
Trigger: AAGTCCTGAGGGAATAAAGTCCTGCATTATATATCAATTAAAGACTGCTCTCCAGAGGGTTTGGGCTCTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR TCA 72 bp ATGGGAAGCCTGGAGTCCAACCTTATCAAGTTTCCCTaGGTTGGCATGAATGTAAAACAGAATCCAGCTAAT +
Preference number: 3 (lower is better)
Translates to: MGSLESNLIKFP*VGMNVKQNPAN
Trigger: ATTAGCTGGATTCTGTTTTACATTCATGCCAACTCAGGGAAACTTGATAAGGTTGGACTCCAGGCTTCCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR GCA 72 bp TGTATTAAGAATACTGGAAATTCTACCTGTGTGGCCTaGCAAGAATGTAGGTGTCTGAATCATGGCCTGTCT +
Preference number: 3 (lower is better)
Translates to: CIKNTGNSTCVA*QECRCLNHGLS
Trigger: AGACAGGCCATGATTCAGACACCTACATTCTTGGCAGGCCACACAGGTAGAATTTCCAGTATTCTTAATACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp GTGGCTCTCATAGATATGTACTATGTTTCTTGTATTCATACAAGGAAATGTCTCGAAAGGCTGTCAGTCTaGTTGAGGTATCCAGCCCTC +
Preference number: 3 (lower is better)
Translates to: VALIDMYYVSCIHTRKCLERLSV*LRYPAL
Trigger: GAGGGCTGGATACCTCAACAAGACTGACAGCCTTTC...GAGACATTTCCTTGTATGAATACAAGAAACATAGTACATATCTATGAGAGCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp TCAATCTTAGTACCAAAACAGGTCCAAGTCCACCAGAAATCTCTTCATATAATAGGACCCAAGGTGCCTTaGGGAAGGGAATTATCCTGT +
Preference number: 3 (lower is better)
Translates to: SILVPKQVQVHQKSLHIIGPKVP*GRELSC
Trigger: ACAGGATAATTCCCTTCCCAAAGGCACCTTGGGTCC...TATTATATGAAGAGATTTCTGGTGGACTTGGACCTGTTTTGGTACTAAGATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp GTCACATGTAACTGGAATTACAGAAGATTATGTGTGTGGGTACTGGAAATCAAAGTCAATCTCCAGAGCTaGCCAGCTATGTCATTGGGA +
Preference number: 3 (lower is better)
Translates to: VTCNWNYRRLCVWVLEIKVNLQS*PAMSLG
Trigger: TCCCAATGACATAGCTGGCAAGCTCTGGAGATTGAC...TTTGATTTCCAGTACCCACACACATAATCTTCTGTAATTCCAGTTACATGTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR TCA 72 bp AATCCCCAGGTTTCCAAACCCAAAGCTCTGAAACACTaGCTTCAAAGAGGAACATGCCTCTACAAATACTTT +
Preference number: 3 (lower is better)
Translates to: NPQVSKPKALKH*LQRGTCLYKYF
Trigger: AAAGTATTTGTAGAGGCATGTTCCTCTTTGAAGTCAGTGTTTCAGAGCTTTGGGTTTGGAAACCTGGGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 72 bp AGTAGGTGCTCAAATCTAAAAGCTCTGACTTGCAAATaGAAAGTCATGGTCAAGCTCACCTTTATCTGGAGT +
Preference number: 3 (lower is better)
Translates to: SRCSNLKALTCK*KVMVKLTFIWS
Trigger: ACTCCAGATAAAGGTGAGCTTGACCATGACTTTGCATTTGCAAGTCAGAGCTTTTAGATTTGAGCACCTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp GTCTATTTTCTCCAACATATGTCTGGCCCTACTAATGTAGAACATGCTGTTAGAGGTCAGGAACTCTTCTaGATGTTACTTGATGTTACC +
Preference number: 3 (lower is better)
Translates to: VYFLQHMSGPTNVEHAVRGQELF*MLLDVT
Trigger: GGTAACATCAAGTAACATCAAGAAGAGTTCCTGACC...TCTAACAGCATGTTCTACATTAGTAGGGCCAGACATATGTTGGAGAAAATAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR-3UTR CAA 90 bp GCAAGACACAAAGGTCAGGAACTCTTCTTGATGTTACTTGATGTTACCAAACAATGGGCTCCACATTGCTaGTCTATTTTCTCCAACATA +
Preference number: 3 (lower is better)
Translates to: ARHKGQELFLMLLDVTKQWAPHC*SIFSNI
Trigger: TATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCA...TTGTTTGGTAACATCAAGTAACATCAAGAAGAGTTCCTGACCTTTGTGTCTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR TCA 72 bp TATTCAAGCTATCAGGTGCATGATTCAGCAGCCTCTTaGTCTACCTTAAGATGGAGTAAACAGACTAAGAGA +
Preference number: 3 (lower is better)
Translates to: YSSYQVHDSAAS*STLRWSKQTKR
Trigger: TCTCTTAGTCTGTTTACTCCATCTTAAGGTAGATCAAGAGGCTGCTGAATCATGCACCTGATAGCTTGAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 72 bp TACATTATAACTCAAAGCAGCCTTTCATCACAAACATaGCTCTACAGAGAAGTACATAGACACACAGGACAG +
Preference number: 3 (lower is better)
Translates to: YIITQSSLSSQT*LYREVHRHTGQ
Trigger: CTGTCCTGTGTGTCTATGTACTTCTCTGTAGAGGCATGTTTGTGATGAAAGGCTGCTTTGAGTTATAATGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 72 bp AATAATATAACAATGGGTCCACGAGGTCTCATTCAATaGCATGCAACAGGGGCTTCACTGAAAAGAAATGAT +
Preference number: 3 (lower is better)
Translates to: NNITMGPRGLIQ*HATGASLKRND
Trigger: ATCATTTCTTTTCAGTGAAGCCCCTGTTGCATGGCATTGAATGAGACCTCGTGGACCCATTGTTATATTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CCA 72 bp CCCTCATCAACAGTGGCTGTGTATACTGAGTTTTGTTaGTTTAAGGATGATGTCTGTGGAGGTTTACAAAAA +
Preference number: 3 (lower is better)
Translates to: PSSTVAVYTEFC*FKDDVCGGLQK
Trigger: TTTTTGTAAACCTCCACAGACATCATCCTTAAACCAACAAAACTCAGTATACACAGCCACTGTTGATGAGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR-3UTR CAA 90 bp GTCACATGTAACTGGAATTACAGAAGATTATGTGTGTGGGTACTGGAAATCAAATGGGCTCCACATTGCTaGTCTATTTTCTCCAACATA +
Preference number: 3 (lower is better)
Translates to: VTCNWNYRRLCVWVLEIKWAPHC*SIFSNI
Trigger: TATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCA...TTTGATTTCCAGTACCCACACACATAATCTTCTGTAATTCCAGTTACATGTGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
3UTR TCA 72 bp GCTTCCACTTATGAAAAAGATATCTGCTTTACTCTCTaGAAGCCAAAGGGACATGCCACACTTTTCTATTTC +
Preference number: 3 (lower is better)
Translates to: ASTYEKDICFTL*KPKGHATLFYF
Trigger: GAAATAGAAAAGTGTGGCATGTCCCTTTGGCTTTCAGAGAGTAAAGCAGATATCTTTTTCATAAGTGGAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR GCA 72 bp TTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTaGCGTATTCAACTCAACCAACAAAATCCATCTGTC +
Preference number: 3 (lower is better)
Translates to: LQKERRHRCFST*RIQLNQQNPSV
Trigger: GACAGATGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CCA 72 bp CTGCTTAAATTAAACCTCTTCAGACAAACACAAATCTaGTTGAAACACAACAGGAAGTCTGGGACAGACAAT +
Preference number: 3 (lower is better)
Translates to: LLKLNLFRQTQI*LKHNRKSGTDN
Trigger: ATTGTCTGTCCCAGACTTCCTGTTGTGTTTCAACCAGATTTGTGTTTGTCTGAAGAGGTTTAATTTAAGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp TCCAGCCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCGGCCACCAAAGTAGCTaGCGAACACCACCACCACCA +
Preference number: 4 (lower is better)
Translates to: SSLGPVLWTLADSSCLKTGHQSS*RTPPPP
Trigger: TGGTGGTGGTGGTGTTCGTCAGCTACTTTGGTGGCC...GGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp AGGCTAGGGTGCTGCTCGGGGAGAGAGAACATGTCATATGCAGGGTCCCTCGCTCGGCAGGAGGCGCTGTaGAGGACCGGTAAACTCTTA +
Preference number: 4 (lower is better)
Translates to: RLGCCSGRENMSYAGSLARQEAL*RTGKLL
Trigger: TAAGAGTTTACCGGTCCTGCACAGCGCCTCCTGCCG...AGCGAGGGACCCTGCATATGACATGTTCTCTCTCCCCGAGCAGCACCCTAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp AGGCTAGGGTGCTGCTCGGGGAGAGAGAACATGTCATATGCAGGGTCCCTCGCTCTGGGCTGGCCCACTTaGTCACTCACAGTGCTCAGT +
Preference number: 4 (lower is better)
Translates to: RLGCCSGRENMSYAGSLALGWPT*SLTVLS
Trigger: ACTGAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAG...AGCGAGGGACCCTGCATATGACATGTTCTCTCTCCCCGAGCAGCACCCTAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp TGCCTTGCTACAGAGCTCATGGGAGAGTTCCCATGGGGGCTTTGGGTCCCGCCAGACCTGGAGCTTCATTaGAACCCAAGGCCAGTTTGC +
Preference number: 4 (lower is better)
Translates to: CLATELMGEFPWGLWVPPDLELH*NPRPVC
Trigger: GCAAACTGGCCTTGGGTTGCAATGAAGCTCCAGGTC...TGGCGGGACCCAAAGCCCCCATGGGAACTCTCCCATGAGCTCTGTAGCAAGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 72 bp CCGGGAGTACTTCTCAGCTTTGCTGGGCTGGCCCACTaGCTCACTCACAGTGCTCAGTGGGAATTCCCTGCA +
Preference number: 4 (lower is better)
Translates to: PGVLLSFAGLAH*LTHSAQWEFPA
Trigger: TGCAGGGAATTCCCACTGAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGAGAAGTACTCCCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR CAA 72 bp GCTGGGCATGATGTAGTCCGGGAGTACTTCTCAGCTTaGCTGGGCTGGCCCACTTGCTCACTCACAGTGCTC +
Preference number: 4 (lower is better)
Translates to: AGHDVVREYFSA*LGWPTCSLTVL
Trigger: GAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGAGAAGTACTCCCGGACTACATCATGCCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
3UTR CAA 72 bp CTGGCTGCGCTGCCCCACTGTGGGCGGGGTGATCACTaGTCGGCTTTGGACACAGGTACACTCTGTGTAATT +
Preference number: 4 (lower is better)
Translates to: LAALPHCGRGDH*SALDTGTLCVI
Trigger: AATTACACAGAGTGTACCTGTGTCCAAAGCCGACAAGTGATCACCCCGCCCACAGTGGGGCAGCGCAGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR TCA 90 bp TCCAGCCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCGTGGAGTTGCCATTCTaGCAAAGGCCATCGTTGGAG +
Preference number: 4 (lower is better)
Translates to: SSLGPVLWTLADSSCLKTVELPF*QRPSLE
Trigger: CTCCAACGATGGCCTTTGTCAGAATGGCAACTCCAC...GGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp AGGCTAGGGTGCTGCTCGGGGAGAGAGAACATGTCATATGCAGGGTCCCTCGCTAACCCAAGGCCAGTTTaGCATCTGCATTCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: RLGCCSGRENMSYAGSLANPRPV*HLHSQH
Trigger: GTGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTT...AGCGAGGGACCCTGCATATGACATGTTCTCTCTCCCCGAGCAGCACCCTAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp ACTCACAGTGCTCAGTGGGAATTCCCTGCACCTCCGCCTCTGCAATCCGTCCTCGACCTGGAGCTTCATTaGAACCCAAGGCCAGTTTGC +
Preference number: 4 (lower is better)
Translates to: THSAQWEFPAPPPLQSVLDLELH*NPRPVC
Trigger: GCAAACTGGCCTTGGGTTGCAATGAAGCTCCAGGTC...GAGGACGGATTGCAGAGGCGGAGGTGCAGGGAATTCCCACTGAGCACTGTGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR GCA 90 bp AACACACACATGATGGCTTCCGGTGTGCAGACGGGCTGGCCTAGGGATGCTGGTGACCTGGAGCTTCATTaGAACCCAAGGCCAGTTTGC +
Preference number: 4 (lower is better)
Translates to: NTHMMASGVQTGWPRDAGDLELH*NPRPVC
Trigger: GCAAACTGGCCTTGGGTTGCAATGAAGCTCCAGGTC...ACCAGCATCCCTAGGCCAGCCCGTCTGCACACCGGAAGCCATCATGTGTGTGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp CCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCCTGCTATGGAGCAGAAGGGCTaGGGACTATCAAGTTCCGTC +
Preference number: 4 (lower is better)
Translates to: PRPSSLDSGRLQLSENPAMEQKG*GLSSSV
Trigger: GACGGAACTTGATAGTCCCCAGCCCTTCTGCTCCAT...AGCAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp AACACACACATGATGGCTTCCGGTGTGCAGACGGGCTGGCCTAGGGATGCTGGTCTGGGGTCCATCCTGTaGTTACAGTCCATGAGTTCC +
Preference number: 4 (lower is better)
Translates to: NTHMMASGVQTGWPRDAGLGSIL*LQSMSS
Trigger: GGAACTCATGGACTGTAACCACAGGATGGACCCCAG...ACCAGCATCCCTAGGCCAGCCCGTCTGCACACCGGAAGCCATCATGTGTGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CAA 72 bp CTGCCCCACTGTGGGCGGGGTGATCACTTGTCGGCTTaGGACACAGGTACACTCTGTGTAATTTCGGACCTG +
Preference number: 4 (lower is better)
Translates to: LPHCGRGDHLSA*DTGTLCVISDL
Trigger: CAGGTCCGAAATTACACAGAGTGTACCTGTGTCCAAAGCCGACAAGTGATCACCCCGCCCACAGTGGGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR GCA 90 bp AGCCCAGAAGAGCACGTATGGGTGCCTGCCAGCAGCTTTTCCTTCCTATCCCCTAACCCAAGGCCAGTTTaGCATCTGCATTCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: SPEEHVWVPASSFSFLSPNPRPV*HLHSQH
Trigger: GTGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTT...AGGGGATAGGAAGGAAAAGCTGCTGGCAGGCACCCATACGTGCTCTTCTGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR CCA 90 bp TGTGCACCTTTTGCATGTCTGGTGCCTGTGATGGGGACAAGAAGGTGTCACATGTTCCTCCCGAGTCCTTaGGACAGGGAGGAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: CAPFACLVPVMGTRRCHMFLPSP*DREEAP
Trigger: TGGAGCCTCCTCCCTGTCCCAAGGACTCGGGAGGAA...CATGTGACACCTTCTTGTCCCCATCACAGGCACCAGACATGCAAAAGGTGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR CCA 90 bp AGGCTAGGGTGCTGCTCGGGGAGAGAGAACATGTCATATGCAGGGTCCCTCGCTCACCAGTGTAGATGCTaGCATTGGAAGCTGGGATAC +
Preference number: 4 (lower is better)
Translates to: RLGCCSGRENMSYAGSLAHQCRC*HWKLGY
Trigger: GTATCCCAGCTTCCAATGCCAGCATCTACACTGGTG...AGCGAGGGACCCTGCATATGACATGTTCTCTCTCCCCGAGCAGCACCCTAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AACACACACATGATGGCTTCCGGTGTGCAGACGGGCTGGCCTAGGGATGCTGGTAAACTGAAGTCATCATaGGTGCCTGGGGTCCCATCA +
Preference number: 4 (lower is better)
Translates to: NTHMMASGVQTGWPRDAGKLKSS*VPGVPS
Trigger: TGATGGGACCCCAGGCACCCATGATGACTTCAGTTT...ACCAGCATCCCTAGGCCAGCCCGTCTGCACACCGGAAGCCATCATGTGTGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR TCA 90 bp CCTATGAGGCATGGTCAGAGAAGGTCCCGTTGTGTAAGGGATGTTTATGCCTCCCTGCATTCCCAGCACTaGAATTCTGCCGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: PMRHGQRRSRCVRDVYASLHSQH*NSAGRR
Trigger: CCTCCTGCCGGCAGAATTTCAGTGCTGGGAATGCAG...GGAGGCATAAACATCCCTTACACAACGGGACCTTCTCTGACCATGCCTCATAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146763.8
CDS-3UTR TCA 90 bp CCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCCTGCTCAAAGTGGAAGATACTaGCACAGTTTTGCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: PRPSSLDSGRLQLSENPAQSGRY*HSFAGV
Trigger: GACCCCAGCAAAACTGTGTCAGTATCTTCCACTTTG...AGCAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp GTCCCGCCACACTGTGGTGATGTTCCTTGGTGCACACAGGGTTCTACAAAGCAGCTATATCAAAGCAGCTaGCCAGCAGCCCTGACTCAG +
Preference number: 4 (lower is better)
Translates to: VPPHCGDVPWCTQGSTKQLYQSS*PAALTQ
Trigger: CTGAGTCAGGGCTGCTGGTCAGCTGCTTTGATATAG...CTGCTTTGTAGAACCCTGTGTGCACCAAGGAACATCACCACAGTGTGGCGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp GTCCCGCCACACTGTGGTGATGTTCCTTGGTGCACACAGGGTTCTACAAAGCAGGTGGAGTTGCCATTCTaGCAAAGGCCATCGTTGGAG +
Preference number: 4 (lower is better)
Translates to: VPPHCGDVPWCTQGSTKQVELPF*QRPSLE
Trigger: CTCCAACGATGGCCTTTGTCAGAATGGCAACTCCAC...CTGCTTTGTAGAACCCTGTGTGCACCAAGGAACATCACCACAGTGTGGCGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp TCGTCCTGCCCAGGGTCTGCAGAGGAACTTACTGCTTCTGAGAAAGGTCCCGGATCACTCTGGTCAAGGTaGACAGGATTTCTGGGATCC +
Preference number: 4 (lower is better)
Translates to: SSCPGSAEELTASEKGPGSLWSR*TGFLGS
Trigger: GGATCCCAGAAATCCTGTTCACCTTGACCAGAGTGA...TCCGGGACCTTTCTCAGAAGCAGTAAGTTCCTCTGCAGACCCTGGGCAGGACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR TCA 90 bp TCCAGCCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCTGTTGCTTAAGATCCTaGCAGCTGCTCTTGGTAGGT +
Preference number: 4 (lower is better)
Translates to: SSLGPVLWTLADSSCLKTCCLRS*QLLLVG
Trigger: ACCTACCAAGAGCAGCTGTCAGGATCTTAAGCAACA...GGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp GTGAAGGGATGGAGTCGTCATCACTTCAGTGTGTACTCCAGCCTCGGCCCAGTTTTCCGTTGTAGTGCCTaGCGAAGTGGATGGAGCAGA +
Preference number: 4 (lower is better)
Translates to: VKGWSRHHFSVYSSLGPVFRCSA*RSGWSR
Trigger: TCTGCTCCATCCACTTCGGCAGGCACTACAACGGAA...AACTGGGCCGAGGCTGGAGTACACACTGAAGTGATGACGACTCCATCCCTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp CCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCCTGCTAGATGGCTGTGGAGTTaGCATTCTGACAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: PRPSSLDSGRLQLSENPARWLWS*HSDKGH
Trigger: ATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCT...AGCAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp AGCCCAGAAGAGCACGTATGGGTGCCTGCCAGCAGCTTTTCCTTCCTATCCCCTTACTGCAGGGCCGAGTaGTCCCATGACATACATGAT +
Preference number: 4 (lower is better)
Translates to: SPEEHVWVPASSFSFLSPYCRAE*SHDIHD
Trigger: ATCATGTATGTCATGGGAGCACTCGGCCCTGCAGTA...AGGGGATAGGAAGGAAAAGCTGCTGGCAGGCACCCATACGTGCTCTTCTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR CCA 90 bp TACAAAGCAGCATCGGGGCTCTCGTCCTGCCCAGGGTCTGCAGAGGAACTTACTCTGACACAGTTTTGCTaGGGTCCATCCTGTGGTTAC +
Preference number: 4 (lower is better)
Translates to: YKAASGLSSCPGSAEELTLTQFC*GPSCGY
Trigger: GTAACCACAGGATGGACCCCAGCAAAACTGTGTCAG...AGTAAGTTCCTCTGCAGACCCTGGGCAGGACGAGAGCCCCGATGCTGCTTTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR CCA 90 bp AGCCCAGAAGAGCACGTATGGGTGCCTGCCAGCAGCTTTTCCTTCCTATCCCCTCTGACACAGTTTTGCTaGGGTCCATCCTGTGGTTAC +
Preference number: 4 (lower is better)
Translates to: SPEEHVWVPASSFSFLSPLTQFC*GPSCGY
Trigger: GTAACCACAGGATGGACCCCAGCAAAACTGTGTCAG...AGGGGATAGGAAGGAAAAGCTGCTGGCAGGCACCCATACGTGCTCTTCTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR CCA 90 bp AGCCCAGAAGAGCACGTATGGGTGCCTGCCAGCAGCTTTTCCTTCCTATCCCCTAGACACCTTCTCTCCTaGAGTGTGGCCAAAGTGGAA +
Preference number: 4 (lower is better)
Translates to: SPEEHVWVPASSFSFLSPRHLLS*SVAKVE
Trigger: TTCCACTTTGGCCACACTCCAGGAGAGAAGGTGTCT...AGGGGATAGGAAGGAAAAGCTGCTGGCAGGCACCCATACGTGCTCTTCTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR CCA 90 bp GTGAAGGGATGGAGTCGTCATCACTTCAGTGTGTACTCCAGCCTCGGCCCAGTTGAGGAGGCTCCAAGATaGCTGTGGAGTTGCCATTCT +
Preference number: 4 (lower is better)
Translates to: VKGWSRHHFSVYSSLGPVEEAPR*LWSCHS
Trigger: AGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTC...AACTGGGCCGAGGCTGGAGTACACACTGAAGTGATGACGACTCCATCCCTTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp CCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTACTTCCTCCCGAGTCCTTaGGACAGGGAGGAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: PAGLHIACLFSPTYVWPYFLPSP*DREEAP
Trigger: TGGAGCCTCCTCCCTGTCCCAAGGACTCGGGAGGAA...GTAGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp CACCTGTCTCATGATGCTGGCCTCACAATAGAAGAACAACGTAGGGCGTCTACTTTCCTCCCGAGTCCTTaGGACAGGGAGGAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: HLSHDAGLTIEEQRRASTFLPSP*DREEAP
Trigger: TGGAGCCTCCTCCCTGTCCCAAGGACTCGGGAGGAA...AGTAGACGCCCTACGTTGTTCTTCTATTGTGAGGCCAGCATCATGAGACAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp TCGTCCTGCCCAGGGTCTGCAGAGGAACTTACTGCTTCTGAGAAAGGTCCCGGACACCAGTGTAGATGCTaGCATTGGAAGCTGGGATAC +
Preference number: 4 (lower is better)
Translates to: SSCPGSAEELTASEKGPGHQCRC*HWKLGY
Trigger: GTATCCCAGCTTCCAATGCCAGCATCTACACTGGTG...TCCGGGACCTTTCTCAGAAGCAGTAAGTTCCTCTGCAGACCCTGGGCAGGACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR CCA 90 bp GAAATGACGTCACGTTGTACTCCCAGCAAGAGCCCTGCACTCCGCATTCCTGCTCCCCGCTGCAGATCATaGCTAGCTTTGCAGATTCTC +
Preference number: 4 (lower is better)
Translates to: EMTSRCTPSKSPALRIPAPRCRS*LALQIL
Trigger: GAGAATCTGCAAAGCTAGCCATGATCTGCAGCGGGG...AGCAGGAATGCGGAGTGCAGGGCTCTTGCTGGGAGTACAACGTGACGTCATTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR CCA 90 bp CCCTCTGCAATAGGCTCTCTCAAGCACTGCCTGGAGCTGTTCTCACCTGAGAGTGCAGCCAGCCAGACATaGGTTGAAGTATGTGATCCC +
Preference number: 4 (lower is better)
Translates to: PSAIGSLKHCLELFSPESAASQT*VEVCDP
Trigger: GGGATCACATACTTCAACCCATGTCTGGCTGGCTGC...ACTCTCAGGTGAGAACAGCTCCAGGCAGTGCTTGAGAGAGCCTATTGCAGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR CCA 90 bp GTCCCGCCACACTGTGGTGATGTTCCTTGGTGCACACAGGGTTCTACAAAGCAGAGAGCAGTTTCTTCATaGACTTCCCCCTGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: VPPHCGDVPWCTQGSTKQRAVSS*TSPWVL
Trigger: CAGCACCCAGGGGGAAGTCCATGAAGAAACTGCTCT...CTGCTTTGTAGAACCCTGTGTGCACCAAGGAACATCACCACAGTGTGGCGGGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp GAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTACTGCATTCCCAGCACTaGAATTCTGCCGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: ERLSVLLRYPALINSGCVLHSQH*NSAGRR
Trigger: CCTCCTGCCGGCAGAATTTCAGTGCTGGGAATGCAG...TACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp ATAGCCTTTCCCATGGCTAACCATGGACCTCAGGCTTCTACCAAACGGGAGCAGCTATATCAAAGCAGCTaGCCAGCAGCCCTGACTCAG +
Preference number: 4 (lower is better)
Translates to: IAFPMANHGPQASTKREQLYQSS*PAALTQ
Trigger: CTGAGTCAGGGCTGCTGGTCAGCTGCTTTGATATAG...CTGCTCCCGTTTGGTAGAAGCCTGAGGTCCATGGTTAGCCATGGGAAAGGCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp AACATGCTGTTAGAGGGCACTGAAGACAGAGGGGTAAAGGAGACCACGTCTTCTGGCCACCAAAGTAGCTaGCGAACACCACCACCACCA +
Preference number: 4 (lower is better)
Translates to: NMLLEGTEDRGVKETTSSGHQSS*RTPPPP
Trigger: TGGTGGTGGTGGTGTTCGTCAGCTACTTTGGTGGCC...AGAAGACGTGGTCTCCTTTACCCCTCTGTCTTCAGTGCCCTCTAACAGCATGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp AGCCCAGAAGAGCACGTATGGGTGCCTGCCAGCAGCTTTTCCTTCCTATCCCCTCTCTTGGTAGGTCTCTaGCATTCTTTCCAAAGCCCA +
Preference number: 4 (lower is better)
Translates to: SPEEHVWVPASSFSFLSPLLVGL*HSFQSP
Trigger: TGGGCTTTGGAAAGAATGTCAGAGACCTACCAAGAG...AGGGGATAGGAAGGAAAAGCTGCTGGCAGGCACCCATACGTGCTCTTCTGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR GCA 90 bp TGCTGGTTTCAGTACAGTGATGAGGGACGTTCCGTTGGCTATTCCAGTTTACCCCGGCAGGAGGCGCTGTaGAGGACCGGTAAACTCTTA +
Preference number: 4 (lower is better)
Translates to: CWFQYSDEGRSVGYSSLPRQEAL*RTGKLL
Trigger: TAAGAGTTTACCGGTCCTGCACAGCGCCTCCTGCCG...GGGTAAACTGGAATAGCCAACGGAACGTCCCTCATCACTGTACTGAAACCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp CCTCAGCAAGCTGGTGACCTTCAGGTGAAGGGATGGAGTCGTCATCACTTCAGTGACCTGGAGCTTCATTaGAACCCAAGGCCAGTTTGC +
Preference number: 4 (lower is better)
Translates to: PQQAGDLQVKGWSRHHFSDLELH*NPRPVC
Trigger: GCAAACTGGCCTTGGGTTGCAATGAAGCTCCAGGTC...ACTGAAGTGATGACGACTCCATCCCTTCACCTGAAGGTCACCAGCTTGCTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp AGGGGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTTCCGTTGTAGTGCCTaGCGAAGTGGATGGAGCAGA +
Preference number: 4 (lower is better)
Translates to: RGKAVSLVEVSSPHQQWLFRCSA*RSGWSR
Trigger: TCTGCTCCATCCACTTCGGCAGGCACTACAACGGAA...CAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp AGTCCGGGAGTACTTCTCAGCTTTGCTGGGCTGGCCCACTTGCTCACTCACAGTAGATGGCTGTGGAGTTaGCATTCTGACAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: SPGVLLSFAGLAHLLTHSRWLWS*HSDKGH
Trigger: ATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCT...ACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGAGAAGTACTCCCGGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR GCA 90 bp AGAGGGGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCCTTGCTCACTCACAGTaGTCAGTGGGAATTCCCTGC +
Preference number: 4 (lower is better)
Translates to: RGERLSVLLRYPALINSGLAHSQ*SVGIPC
Trigger: GCAGGGAATTCCCACTGAGCACTGTGAGTGAGCAAG...GCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCCCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp AGGCTAGGGTGCTGCTCGGGGAGAGAGAACATGTCATATGCAGGGTCCCTCGCTGATATGTCTGTGTGGTaGATGGGAATCCCTTTTGCA +
Preference number: 4 (lower is better)
Translates to: RLGCCSGRENMSYAGSLADMSVW*MGIPFA
Trigger: TGCAAAAGGGATTCCCATGCACCACACAGACATATC...AGCGAGGGACCCTGCATATGACATGTTCTCTCTCCCCGAGCAGCACCCTAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AGGGGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGGAGGAGGCTCCAAGATaGCTGTGGAGTTGCCATTCT +
Preference number: 4 (lower is better)
Translates to: RGKAVSLVEVSSPHQQWLEEAPR*LWSCHS
Trigger: AGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTC...CAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp ATAGCCTTTCCCATGGCTAACCATGGACCTCAGGCTTCTACCAAACGGGAGCAGGAGGAGGCTCCAAGATaGCTGTGGAGTTGCCATTCT +
Preference number: 4 (lower is better)
Translates to: IAFPMANHGPQASTKREQEEAPR*LWSCHS
Trigger: AGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTC...CTGCTCCCGTTTGGTAGAAGCCTGAGGTCCATGGTTAGCCATGGGAAAGGCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCTCCGGGCTTCAGCATTCCTCCCGAGTCCTTaGGACAGGGAGGAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: RIQLNQQNPSVCLLRASAFLPSP*DREEAP
Trigger: TGGAGCCTCCTCCCTGTCCCAAGGACTCGGGAGGAA...TGCTGAAGCCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AGAGGGGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCGCAGCCAGCCAGACATaGGTTGAAGTATGTGATCCC +
Preference number: 4 (lower is better)
Translates to: RGERLSVLLRYPALINSGAASQT*VEVCDP
Trigger: GGGATCACATACTTCAACCCATGTCTGGCTGGCTGC...GCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCCCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 72 bp TCCCGGATATGTCTGTGTGGTGCATGGGAATCCCTTTaGCAGAGCAGTTTCTTCATGGACTTCCCCCTGGGT +
Preference number: 4 (lower is better)
Translates to: SRICLCGAWESL*QSSFFMDFPLG
Trigger: ACCCAGGGGGAAGTCCATGAAGAAACTGCTCTGCAAAAGGGATTCCCATGCACCACACAGACATATCCGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR TCA 90 bp CCTATGAGGCATGGTCAGAGAAGGTCCCGTTGTGTAAGGGATGTTTATGCCTCCCTATATCAAAGCAGCTaGCCAGCAGCCCTGACTCAG +
Preference number: 4 (lower is better)
Translates to: PMRHGQRRSRCVRDVYASLYQSS*PAALTQ
Trigger: CTGAGTCAGGGCTGCTGGTCAGCTGCTTTGATATAG...GGAGGCATAAACATCCCTTACACAACGGGACCTTCTCTGACCATGCCTCATAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146763.8
CDS-3UTR TCA 90 bp GTGAAGGGATGGAGTCGTCATCACTTCAGTGTGTACTCCAGCCTCGGCCCAGTTTGGGATACCAAACTGTaGCTCGATGAACTTGGGGAT +
Preference number: 4 (lower is better)
Translates to: VKGWSRHHFSVYSSLGPVWDTKL*LDELGD
Trigger: ATCCCCAAGTTCATCGAGTCACAGTTTGGTATCCCA...AACTGGGCCGAGGCTGGAGTACACACTGAAGTGATGACGACTCCATCCCTTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp CCATGGACCTCAGGCTTCTACCAAACGGGAGCAGGAACATTAAGTGAACCTAGCTTCCGTTGTAGTGCCTaGCGAAGTGGATGGAGCAGA +
Preference number: 4 (lower is better)
Translates to: PWTSGFYQTGAGTLSEPSFRCSA*RSGWSR
Trigger: TCTGCTCCATCCACTTCGGCAGGCACTACAACGGAA...GCTAGGTTCACTTAATGTTCCTGCTCCCGTTTGGTAGAAGCCTGAGGTCCATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp AGGGGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGCGCAACAAAACAAACTaGATTCCCAACGCGAAGGGC +
Preference number: 4 (lower is better)
Translates to: RGKAVSLVEVSSPHQQWLRNKTN*IPNAKG
Trigger: GCCCTTCGCGTTGGGAATGCAGTTTGTTTTGTTGCG...CAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AGAGGGGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCCTGACACAGTTTTGCTaGGGTCCATCCTGTGGTTAC +
Preference number: 4 (lower is better)
Translates to: RGERLSVLLRYPALINSGLTQFC*GPSCGY
Trigger: GTAACCACAGGATGGACCCCAGCAAAACTGTGTCAG...GCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCCCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp ATAGCCTTTCCCATGGCTAACCATGGACCTCAGGCTTCTACCAAACGGGAGCAGAGACACCTTCTCTCCTaGAGTGTGGCCAAAGTGGAA +
Preference number: 4 (lower is better)
Translates to: IAFPMANHGPQASTKREQRHLLS*SVAKVE
Trigger: TTCCACTTTGGCCACACTCCAGGAGAGAAGGTGTCT...CTGCTCCCGTTTGGTAGAAGCCTGAGGTCCATGGTTAGCCATGGGAAAGGCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AACACACACATGATGGCTTCCGGTGTGCAGACGGGCTGGCCTAGGGATGCTGGTGAGACCATTAACGCCTaGATGAAAGTCAGAAAACAC +
Preference number: 4 (lower is better)
Translates to: NTHMMASGVQTGWPRDAGETINA*MKVRKH
Trigger: GTGTTTTCTGACTTTCATCCAGGCGTTAATGGTCTC...ACCAGCATCCCTAGGCCAGCCCGTCTGCACACCGGAAGCCATCATGTGTGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp CTGAGAAAGGTCCCGGATATGTCTGTGTGGTGCATGGGAATCCCTTTTGCAGAGGAGGAGGCTCCAAGATaGCTGTGGAGTTGCCATTCT +
Preference number: 4 (lower is better)
Translates to: LRKVPDMSVWCMGIPFAEEEAPR*LWSCHS
Trigger: AGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTC...CTCTGCAAAAGGGATTCCCATGCACCACACAGACATATCCGGGACCTTTCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR CCA 90 bp ATGCTAATGATATGTGTGGTCATAGCCTTTCCCATGGCTAACCATGGACCTCAGTTCCTCCCGAGTCCTTaGGACAGGGAGGAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: MLMICVVIAFPMANHGPQFLPSP*DREEAP
Trigger: TGGAGCCTCCTCCCTGTCCCAAGGACTCGGGAGGAA...CTGAGGTCCATGGTTAGCCATGGGAAAGGCTATGACCACACATATCATTAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CCTCAGCAAGCTGGTGACCTTCAGGTGAAGGGATGGAGTCGTCATCACTTCAGTGGTCAGTGTAGATGCTaGCATTGGAAGCTGGGATAC +
Preference number: 4 (lower is better)
Translates to: PQQAGDLQVKGWSRHHFSGQCRC*HWKLGY
Trigger: GTATCCCAGCTTCCAATGCCAGCATCTACACTGACC...ACTGAAGTGATGACGACTCCATCCCTTCACCTGAAGGTCACCAGCTTGCTGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp AAAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCTGCATTCCCAGCACTaGAATTCTGCCGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: KTLLGSTLLVYFLQHMSGLHSQH*NSAGRR
Trigger: CCTCCTGCCGGCAGAATTTCAGTGCTGGGAATGCAG...GCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp ACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTCTATATCAAAGCAGCTaGCCAGCAGCCCTGACTCAG +
Preference number: 4 (lower is better)
Translates to: TLLGSTLLVYFLQHMSGPLYQSS*PAALTQ
Trigger: CTGAGTCAGGGCTGCTGGTCAGCTGCTTTGATATAG...AGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp ATGCTAATGATATGTGTGGTCATAGCCTTTCCCATGGCTAACCATGGACCTCAGGGCCACCAAAGTAGCTaGCGAACACCACCACCACCA +
Preference number: 4 (lower is better)
Translates to: MLMICVVIAFPMANHGPQGHQSS*RTPPPP
Trigger: TGGTGGTGGTGGTGTTCGTCAGCTACTTTGGTGGCC...CTGAGGTCCATGGTTAGCCATGGGAAAGGCTATGACCACACATATCATTAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp ACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTTCCACCAGTTTCCGATaGAACGAGGGTCACTCTGGT +
Preference number: 4 (lower is better)
Translates to: TLLGSTLLVYFLQHMSGPSTSFR*NEGHSG
Trigger: ACCAGAGTGACCCTCGTTTCATCGGAAACTGGTGGA...AGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp AGAGGGGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCCTCTTGGTAGGTCTCTaGCATTCTTTCCAAAGCCCA +
Preference number: 4 (lower is better)
Translates to: RGERLSVLLRYPALINSGLLVGL*HSFQSP
Trigger: TGGGCTTTGGAAAGAATGTCAGAGACCTACCAAGAG...GCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCCCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp CCTCCGCCTCTGCAATCCGTCCTCTTTGTACTTGATAGAGTACCAGGCCAGGAATGTTGCTTAAGATCCTaGCAGCTGCTCTTGGTAGGT +
Preference number: 4 (lower is better)
Translates to: PPPLQSVLFVLDRVPGQECCLRS*QLLLVG
Trigger: ACCTACCAAGAGCAGCTGTCAGGATCTTAAGCAACA...TTCCTGGCCTGGTACTCTATCAAGTACAAAGAGGACGGATTGCAGAGGCGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR GCA 90 bp GTGGTAAGATTACCACTGTTAATGCAGCCAGCCAGACATGGGTTGAAGTATGTGCGGCAGGAGGCGCTGTaGAGGACCGGTAAACTCTTA +
Preference number: 4 (lower is better)
Translates to: VVRLPLLMQPARHGLKYVRQEAL*RTGKLL
Trigger: TAAGAGTTTACCGGTCCTGCACAGCGCCTCCTGCCG...CACATACTTCAACCCATGTCTGGCTGGCTGCATTAACAGTGGTAATCTTACCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp AACATGCTGTTAGAGGGCACTGAAGACAGAGGGGTAAAGGAGACCACGTCTTCTAACCCAAGGCCAGTTTaGCATCTGCATTCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: NMLLEGTEDRGVKETTSSNPRPV*HLHSQH
Trigger: GTGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTT...AGAAGACGTGGTCTCCTTTACCCCTCTGTCTTCAGTGCCCTCTAACAGCATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp TGCTGGTTTCAGTACAGTGATGAGGGACGTTCCGTTGGCTATTCCAGTTTACCCGACCTGGAGCTTCATTaGAACCCAAGGCCAGTTTGC +
Preference number: 4 (lower is better)
Translates to: CWFQYSDEGRSVGYSSLPDLELH*NPRPVC
Trigger: GCAAACTGGCCTTGGGTTGCAATGAAGCTCCAGGTC...GGGTAAACTGGAATAGCCAACGGAACGTCCCTCATCACTGTACTGAAACCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp GGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTTACTGCAGGGCCGAGTaGTCCCATGACATACATGAT +
Preference number: 4 (lower is better)
Translates to: GKAVSLVEVSSPHQQWLCYCRAE*SHDIHD
Trigger: ATCATGTATGTCATGGGAGCACTCGGCCCTGCAGTA...ACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp AGGGGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTATTGCAGGTGCGTTTaGACTTCCCAGACACAGCAT +
Preference number: 4 (lower is better)
Translates to: RGKAVSLVEVSSPHQQWLYCRCV*TSQTQH
Trigger: ATGCTGTGTCTGGGAAGTGCAAACGCACCTGCAATA...CAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp CAACTTGCCGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCTCCGGGCTGCACCTCCGCCTCTaGAATCCGTCCTCTTTGTAC +
Preference number: 4 (lower is better)
Translates to: QLAVFNSTNKIHLSAFSGLHLRL*NPSSLY
Trigger: GTACAAAGAGGACGGATTGCAGAGGCGGAGGTGCAG...CCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AACATGCTGTTAGAGGGCACTGAAGACAGAGGGGTAAAGGAGACCACGTCTTCTCTGGGGTCCATCCTGTaGTTACAGTCCATGAGTTCC +
Preference number: 4 (lower is better)
Translates to: NMLLEGTEDRGVKETTSSLGSIL*LQSMSS
Trigger: GGAACTCATGGACTGTAACCACAGGATGGACCCCAG...AGAAGACGTGGTCTCCTTTACCCCTCTGTCTTCAGTGCCCTCTAACAGCATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp GGGTCCCATCACCTGTCTCATGATGCTGGCCTCACAATAGAAGAACAACGTAGGCTGACACAGTTTTGCTaGGGTCCATCCTGTGGTTAC +
Preference number: 4 (lower is better)
Translates to: GSHHLSHDAGLTIEEQRRLTQFC*GPSCGY
Trigger: GTAACCACAGGATGGACCCCAGCAAAACTGTGTCAG...CCTACGTTGTTCTTCTATTGTGAGGCCAGCATCATGAGACAGGTGATGGGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp CCTCAGCAAGCTGGTGACCTTCAGGTGAAGGGATGGAGTCGTCATCACTTCAGTTTCTCTCCTGGAGTGTaGCCAAAGTGGAAGATACTG +
Preference number: 4 (lower is better)
Translates to: PQQAGDLQVKGWSRHHFSFSPGV*PKWKIL
Trigger: CAGTATCTTCCACTTTGGCCACACTCCAGGAGAGAA...ACTGAAGTGATGACGACTCCATCCCTTCACCTGAAGGTCACCAGCTTGCTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp GAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTAGCAGCCAGCCAGACATaGGTTGAAGTATGTGATCCC +
Preference number: 4 (lower is better)
Translates to: ERLSVLLRYPALINSGCVAASQT*VEVCDP
Trigger: GGGATCACATACTTCAACCCATGTCTGGCTGGCTGC...TACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp GGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTGCCAGAGCATACAGGTaGTGTCAATCACAGCTCCAA +
Preference number: 4 (lower is better)
Translates to: GKAVSLVEVSSPHQQWLCARAYR*CQSQLQ
Trigger: TTGGAGCTGTGATTGACACCACCTGTATGCTCTGGC...ACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCTCCGGGCTTCAGCATCAGCTTTGCTGGGCTaGCCCACTTGCTCACTCACA +
Preference number: 4 (lower is better)
Translates to: RIQLNQQNPSVCLLRASASALLG*PTCSLT
Trigger: TGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGA...TGCTGAAGCCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 72 bp TCCCTGGAGAAAAGAGGGGAAAGGCTGTCAGTCTTGTaGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTA +
Preference number: 4 (lower is better)
Translates to: SLEKRGERLSVL*RYPALINSGCV
Trigger: TACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCCCCTCTTTTCTCCAGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp GAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTATCACTCTGGTCAAGGTaGACAGGATTTCTGGGATCC +
Preference number: 4 (lower is better)
Translates to: ERLSVLLRYPALINSGCVSLWSR*TGFLGS
Trigger: GGATCCCAGAAATCCTGTTCACCTTGACCAGAGTGA...TACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp GCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTATACTGTCACTCTGGTCAAGGTaGACAGGATTTCTGGGATCC +
Preference number: 4 (lower is better)
Translates to: AVSLVEVSSPHQQWLCILSLWSR*TGFLGS
Trigger: GGATCCCAGAAATCCTGTTCACCTTGACCAGAGTGA...CAGTATACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp AATCCCTTTTGCAGAGCAGTTTCTTCATGGACTTCCCCCTGGGTGCTGAAGGCTCTCTTGGTAGGTCTCTaGCATTCTTTCCAAAGCCCA +
Preference number: 4 (lower is better)
Translates to: NPFCRAVSSWTSPWVLKALLVGL*HSFQSP
Trigger: TGGGCTTTGGAAAGAATGTCAGAGACCTACCAAGAG...AGCCTTCAGCACCCAGGGGGAAGTCCATGAAGAAACTGCTCTGCAAAAGGGATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR TCA 90 bp GGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTGGAACTTACTGCTTCTaGGAAAGGTCCCGGATATGT +
Preference number: 4 (lower is better)
Translates to: GKAVSLVEVSSPHQQWLCGTYCF*ERSRIC
Trigger: ACATATCCGGGACCTTTCTCAGAAGCAGTAAGTTCC...ACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp CCTCAGCAAGCTGGTGACCTTCAGGTGAAGGGATGGAGTCGTCATCACTTCAGTCTATTTGGAGCCTCATaGACAAGGGAAACTGAAGTC +
Preference number: 4 (lower is better)
Translates to: PQQAGDLQVKGWSRHHFSLFGAS*TRETEV
Trigger: GACTTCAGTTTCCCTTGTTCATGAGGCTCCAAATAG...ACTGAAGTGATGACGACTCCATCCCTTCACCTGAAGGTCACCAGCTTGCTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR TCA 90 bp AAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCGACACCAGTTTCCGATaGAACGAGGGTCACTCTGGT +
Preference number: 4 (lower is better)
Translates to: KPCWAPHCLSIFSNICLADTSFR*NEGHSG
Trigger: ACCAGAGTGACCCTCGTTTCATCGGAAACTGGTGTC...GGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146763.8
CDS-3UTR GCA 90 bp CTAATGATATGTGTGGTCATAGCCTTTCCCATGGCTAACCATGGACCTCAGGCTAACCCAAGGCCAGTTTaGCATCTGCATTCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: LMICVVIAFPMANHGPQANPRPV*HLHSQH
Trigger: GTGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTT...AGCCTGAGGTCCATGGTTAGCCATGGGAAAGGCTATGACCACACATATCATTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp GTGAAGGGATGGAGTCGTCATCACTTCAGTGTGTACTCCAGCCTCGGCCCAGTTAAGTCAGAAAACACATaGACACTAAGAAGCAGCGAG +
Preference number: 4 (lower is better)
Translates to: VKGWSRHHFSVYSSLGPVKSENT*TLRSSE
Trigger: CTCGCTGCTTCTTAGTGTGCATGTGTTTTCTGACTT...AACTGGGCCGAGGCTGGAGTACACACTGAAGTGATGACGACTCCATCCCTTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp CAACTTGCCGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCTCCGGGCTTGCTCACTCACAGTaGTCAGTGGGAATTCCCTGC +
Preference number: 4 (lower is better)
Translates to: QLAVFNSTNKIHLSAFSGLAHSQ*SVGIPC
Trigger: GCAGGGAATTCCCACTGAGCACTGTGAGTGAGCAAG...CCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCATGGAGCAGAAGGGCTaGGGACTATCAAGTTCCGTC +
Preference number: 4 (lower is better)
Translates to: KPCWAPHCLSIFSNICLAMEQKG*GLSSSV
Trigger: GACGGAACTTGATAGTCCCCAGCCCTTCTGCTCCAT...GGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp CGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCTCCGGGCTTCAGCACTGGGGTCCATCCTGTaGTTACAGTCCATGAGTTCC +
Preference number: 4 (lower is better)
Translates to: RIQLNQQNPSVCLLRASALGSIL*LQSMSS
Trigger: GGAACTCATGGACTGTAACCACAGGATGGACCCCAG...TGCTGAAGCCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp GGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTTTCTCTCCTGGAGTGTaGCCAAAGTGGAAGATACTG +
Preference number: 4 (lower is better)
Translates to: GKAVSLVEVSSPHQQWLCFSPGV*PKWKIL
Trigger: CAGTATCTTCCACTTTGGCCACACTCCAGGAGAGAA...ACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CACCTGTCTCATGATGCTGGCCTCACAATAGAAGAACAACGTAGGGCGTCTACTAGACACCTTCTCTCCTaGAGTGTGGCCAAAGTGGAA +
Preference number: 4 (lower is better)
Translates to: HLSHDAGLTIEEQRRASTRHLLS*SVAKVE
Trigger: TTCCACTTTGGCCACACTCCAGGAGAGAAGGTGTCT...AGTAGACGCCCTACGTTGTTCTTCTATTGTGAGGCCAGCATCATGAGACAGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp ATTACAGCTTCCTGTCAGATTCCTATGAGGCATGGTCAGAGAAGGTCCCGTTGTCCCCGCTGCAGATCATaGCTAGCTTTGCAGATTCTC +
Preference number: 4 (lower is better)
Translates to: ITASCQIPMRHGQRRSRCPRCRS*LALQIL
Trigger: GAGAATCTGCAAAGCTAGCCATGATCTGCAGCGGGG...ACAACGGGACCTTCTCTGACCATGCCTCATAGGAATCTGACAGGAAGCTGTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146763.8
CDS-3UTR TCA 90 bp AGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAATCCACTGCATTCCCAGCACTaGAATTCTGCCGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: RRHRCFSTCRIQLNQQNPLHSQH*NSAGRR
Trigger: CCTCCTGCCGGCAGAATTTCAGTGCTGGGAATGCAG...TGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp GCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTATACTGCAAAGTGGAAGATACTaGCACAGTTTTGCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: AVSLVEVSSPHQQWLCILQSGRY*HSFAGV
Trigger: GACCCCAGCAAAACTGTGTCAGTATCTTCCACTTTG...CAGTATACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp AACATGCTGTTAGAGGGCACTGAAGACAGAGGGGTAAAGGAGACCACGTCTTCTCAAAGTGGAAGATACTaGCACAGTTTTGCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: NMLLEGTEDRGVKETTSSQSGRY*HSFAGV
Trigger: GACCCCAGCAAAACTGTGTCAGTATCTTCCACTTTG...AGAAGACGTGGTCTCCTTTACCCCTCTGTCTTCAGTGCCCTCTAACAGCATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp ACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTCAAAGTGGAAGATACTaGCACAGTTTTGCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: TLLGSTLLVYFLQHMSGPQSGRY*HSFAGV
Trigger: GACCCCAGCAAAACTGTGTCAGTATCTTCCACTTTG...AGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp GAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTACAAAGTGGAAGATACTaGCACAGTTTTGCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: ERLSVLLRYPALINSGCVQSGRY*HSFAGV
Trigger: GACCCCAGCAAAACTGTGTCAGTATCTTCCACTTTG...TACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp CTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATGGCCACCAAAGTAGCTaGCGAACACCACCACCACCA +
Preference number: 4 (lower is better)
Translates to: LWRFTKRKKAQVFLNLPYGHQSS*RTPPPP
Trigger: TGGTGGTGGTGGTGTTCGTCAGCTACTTTGGTGGCC...ATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp TCAGATTCCTATGAGGCATGGTCAGAGAAGGTCCCGTTGTGTAAGGGATGTTTAGTGGAGTTGCCATTCTaGCAAAGGCCATCGTTGGAG +
Preference number: 4 (lower is better)
Translates to: SDSYEAWSEKVPLCKGCLVELPF*QRPSLE
Trigger: CTCCAACGATGGCCTTTGTCAGAATGGCAACTCCAC...TAAACATCCCTTACACAACGGGACCTTCTCTGACCATGCCTCATAGGAATCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146763.8
CDS-3UTR TCA 90 bp CCATGGACCTCAGGCTTCTACCAAACGGGAGCAGGAACATTAAGTGAACCTAGCGTAGACAAAACGAAATaGCGTCACGTTGTACTCCCA +
Preference number: 4 (lower is better)
Translates to: PWTSGFYQTGAGTLSEPSVDKTK*RHVVLP
Trigger: TGGGAGTACAACGTGACGTCATTTCGTTTTGTCTAC...GCTAGGTTCACTTAATGTTCCTGCTCCCGTTTGGTAGAAGCCTGAGGTCCATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp CCTGAAAACAGAATCCAGCTTGATTTTTATGTGTGCTCACCAGAGTGCCTAACACGGCAGGAGGCGCTGTaGAGGACCGGTAAACTCTTA +
Preference number: 4 (lower is better)
Translates to: PENRIQLDFYVCSPECLTRQEAL*RTGKLL
Trigger: TAAGAGTTTACCGGTCCTGCACAGCGCCTCCTGCCG...TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAGCTGGATTCTGTTTTCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp TCAGATTCCTATGAGGCATGGTCAGAGAAGGTCCCGTTGTGTAAGGGATGTTTAAACCCAAGGCCAGTTTaGCATCTGCATTCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: SDSYEAWSEKVPLCKGCLNPRPV*HLHSQH
Trigger: GTGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTT...TAAACATCCCTTACACAACGGGACCTTCTCTGACCATGCCTCATAGGAATCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146763.8
CDS-3UTR GCA 90 bp GCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTATACTGAGATGGCTGTGGAGTTaGCATTCTGACAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: AVSLVEVSSPHQQWLCILRWLWS*HSDKGH
Trigger: ATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCT...CAGTATACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp AACATGCTGTTAGAGGGCACTGAAGACAGAGGGGTAAAGGAGACCACGTCTTCTAGATGGCTGTGGAGTTaGCATTCTGACAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: NMLLEGTEDRGVKETTSSRWLWS*HSDKGH
Trigger: ATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCT...AGAAGACGTGGTCTCCTTTACCCCTCTGTCTTCAGTGCCCTCTAACAGCATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp ATGCTAATGATATGTGTGGTCATAGCCTTTCCCATGGCTAACCATGGACCTCAGATGGAGCAGAAGGGCTaGGGACTATCAAGTTCCGTC +
Preference number: 4 (lower is better)
Translates to: MLMICVVIAFPMANHGPQMEQKG*GLSSSV
Trigger: GACGGAACTTGATAGTCCCCAGCCCTTCTGCTCCAT...CTGAGGTCCATGGTTAGCCATGGGAAAGGCTATGACCACACATATCATTAGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CAACTTGCCGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCTCCGGGCTGACACAGTTTTGCTaGGGTCCATCCTGTGGTTAC +
Preference number: 4 (lower is better)
Translates to: QLAVFNSTNKIHLSAFSGLTQFC*GPSCGY
Trigger: GTAACCACAGGATGGACCCCAGCAAAACTGTGTCAG...CCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CCAACAAAATCCATCTGTCTGCCTTCTCCGGGCTTCAGCAGGGATGTTACAAAGTTCTCTCCTGGAGTGTaGCCAAAGTGGAAGATACTG +
Preference number: 4 (lower is better)
Translates to: PTKSICLPSPGFSRDVTKFSPGV*PKWKIL
Trigger: CAGTATCTTCCACTTTGGCCACACTCCAGGAGAGAA...CTTTGTAACATCCCTGCTGAAGCCCGGAGAAGGCAGACAGATGGATTTTGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR CCA 90 bp CACCTGTCTCATGATGCTGGCCTCACAATAGAAGAACAACGTAGGGCGTCTACTTTCTCTCCTGGAGTGTaGCCAAAGTGGAAGATACTG +
Preference number: 4 (lower is better)
Translates to: HLSHDAGLTIEEQRRASTFSPGV*PKWKIL
Trigger: CAGTATCTTCCACTTTGGCCACACTCCAGGAGAGAA...AGTAGACGCCCTACGTTGTTCTTCTATTGTGAGGCCAGCATCATGAGACAGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp TTGCAAATGCAAAGTCATGGTCAAGCTCACCTTTATCTGGAGTGTATGCTAATGTTCCTCCCGAGTCCTTaGGACAGGGAGGAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: LQMQSHGQAHLYLECMLMFLPSP*DREEAP
Trigger: TGGAGCCTCCTCCCTGTCCCAAGGACTCGGGAGGAA...CATTAGCATACACTCCAGATAAAGGTGAGCTTGACCATGACTTTGCATTTGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 72 bp GACTGCTCCCAAGTCTGGAAAACAGAATTAGCGTGCTaGGCTTCTAGGCTATTCTGGGGCTTGCAACATTCT +
Preference number: 4 (lower is better)
Translates to: DCSQVWKTELAC*ASRLFWGLQHS
Trigger: AGAATGTTGCAAGCCCCAGAATAGCCTAGAAGCCAAGCACGCTAATTCTGTTTTCCAGACTTGGGAGCAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp CGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCTCCGGGCTTCAGCACAAAGTGGAAGATACTaGCACAGTTTTGCTGGGGTC +
Preference number: 4 (lower is better)
Translates to: RIQLNQQNPSVCLLRASAQSGRY*HSFAGV
Trigger: GACCCCAGCAAAACTGTGTCAGTATCTTCCACTTTG...TGCTGAAGCCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp ATAGTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAGGCCACCAAAGTAGCTaGCGAACACCACCACCACCA +
Preference number: 4 (lower is better)
Translates to: IVEANSIVLCWRTHSRCSGHQSS*RTPPPP
Trigger: TGGTGGTGGTGGTGTTCGTCAGCTACTTTGGTGGCC...TGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp GTGGTAAGATTACCACTGTTAATGCAGCCAGCCAGACATGGGTTGAAGTATGTGTCACTCTGGTCAAGGTaGACAGGATTTCTGGGATCC +
Preference number: 4 (lower is better)
Translates to: VVRLPLLMQPARHGLKYVSLWSR*TGFLGS
Trigger: GGATCCCAGAAATCCTGTTCACCTTGACCAGAGTGA...CACATACTTCAACCCATGTCTGGCTGGCTGCATTAACAGTGGTAATCTTACCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp CTAATGATATGTGTGGTCATAGCCTTTCCCATGGCTAACCATGGACCTCAGGCTTGTTGCTTAAGATCCTaGCAGCTGCTCTTGGTAGGT +
Preference number: 4 (lower is better)
Translates to: LMICVVIAFPMANHGPQACCLRS*QLLLVG
Trigger: ACCTACCAAGAGCAGCTGTCAGGATCTTAAGCAACA...AGCCTGAGGTCCATGGTTAGCCATGGGAAAGGCTATGACCACACATATCATTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp AAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCTGGGATACCAAACTGTaGCTCGATGAACTTGGGGAT +
Preference number: 4 (lower is better)
Translates to: KPCWAPHCLSIFSNICLAWDTKL*LDELGD
Trigger: ATCCCCAAGTTCATCGAGTCACAGTTTGGTATCCCA...GGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp CAACTTGCCGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCTCCGGGGGAACTTACTGCTTCTaGGAAAGGTCCCGGATATGT +
Preference number: 4 (lower is better)
Translates to: QLAVFNSTNKIHLSAFSGGTYCF*ERSRIC
Trigger: ACATATCCGGGACCTTTCTCAGAAGCAGTAAGTTCC...CCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp GGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTAAGTCAGAAAACACATaGACACTAAGAAGCAGCGAG +
Preference number: 4 (lower is better)
Translates to: GKAVSLVEVSSPHQQWLCKSENT*TLRSSE
Trigger: CTCGCTGCTTCTTAGTGTGCATGTGTTTTCTGACTT...ACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp TGCATAGTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTGCACTCCGCATTCCTaGTGCCAGAGCATACAGGTG +
Preference number: 4 (lower is better)
Translates to: CIVEANSIVLCWRTHSRCCTPHS*CQSIQV
Trigger: CACCTGTATGCTCTGGCAGCAGGAATGCGGAGTGCA...GCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTATGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp GTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAAATCTGGGCTGGCCCACTTaGTCACTCACAGTGCTCAGT +
Preference number: 4 (lower is better)
Translates to: VEANSIVLCWRTHSRCSNLGWPT*SLTVLS
Trigger: ACTGAGCACTGTGAGTGAGCAAGTGGGCCAGCCCAG...ATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAATCCAACTCACAGTGCTCAGTaGGAATTCCCTGCACCTCCG +
Preference number: 4 (lower is better)
Translates to: RRHRCFSTCRIQLNQQNPTHSAQ*EFPAPP
Trigger: CGGAGGTGCAGGGAATTCCCACTGAGCACTGTGAGT...TGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CTAATGATATGTGTGGTCATAGCCTTTCCCATGGCTAACCATGGACCTCAGGCTCCGGATATGTCTGTGTaGTGCATGGGAATCCCTTTT +
Preference number: 4 (lower is better)
Translates to: LMICVVIAFPMANHGPQAPDMSV*CMGIPF
Trigger: AAAAGGGATTCCCATGCACCACACAGACATATCCGG...AGCCTGAGGTCCATGGTTAGCCATGGGAAAGGCTATGACCACACATATCATTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp GTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCCTATATCAAAGCAGCTaGCCAGCAGCCCTGACTCAG +
Preference number: 4 (lower is better)
Translates to: VEVYKKKEGTGVSQLAVFLYQSS*PAALTQ
Trigger: CTGAGTCAGGGCTGCTGGTCAGCTGCTTTGATATAG...GAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp CTTTTCTCAGTGGCAACAGTGATAACCTTGACCTTCAGATTCATTAAAAAGACCGGCCACCAAAGTAGCTaGCGAACACCACCACCACCA +
Preference number: 4 (lower is better)
Translates to: LFSVATVITLTFRFIKKTGHQSS*RTPPPP
Trigger: TGGTGGTGGTGGTGTTCGTCAGCTACTTTGGTGGCC...GGTCTTTTTAATGAATCTGAAGGTCAAGGTTATCACTGTTGCCACTGAGAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp CCTGAAAACAGAATCCAGCTTGATTTTTATGTGTGCTCACCAGAGTGCCTAACAGTGGAGTTGCCATTCTaGCAAAGGCCATCGTTGGAG +
Preference number: 4 (lower is better)
Translates to: PENRIQLDFYVCSPECLTVELPF*QRPSLE
Trigger: CTCCAACGATGGCCTTTGTCAGAATGGCAACTCCAC...TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAGCTGGATTCTGTTTTCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp AGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAATCCAGTGGAGTTGCCATTCTaGCAAAGGCCATCGTTGGAG +
Preference number: 4 (lower is better)
Translates to: RRHRCFSTCRIQLNQQNPVELPF*QRPSLE
Trigger: CTCCAACGATGGCCTTTGTCAGAATGGCAACTCCAC...TGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp GTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCTCCACCAGTTTCCGATaGAACGAGGGTCACTCTGGT +
Preference number: 4 (lower is better)
Translates to: VEVYKKKEGTGVSQLAVFSTSFR*NEGHSG
Trigger: ACCAGAGTGACCCTCGTTTCATCGGAAACTGGTGGA...GAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp CCAAAGGGACATGCCACACTTTTCTATTTCCAATCAAATTGCATAGTTGAAGCACGGCAGGAGGCGCTGTaGAGGACCGGTAAACTCTTA +
Preference number: 4 (lower is better)
Translates to: PKGHATLFYFQSNCIVEARQEAL*RTGKLL
Trigger: TAAGAGTTTACCGGTCCTGCACAGCGCCTCCTGCCG...TGCTTCAACTATGCAATTTGATTGGAAATAGAAAAGTGTGGCATGTCCCTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp GTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCGACCTGGAGCTTCATTaGAACCCAAGGCCAGTTTGC +
Preference number: 4 (lower is better)
Translates to: VEVYKKKEGTGVSQLAVFDLELH*NPRPVC
Trigger: GCAAACTGGCCTTGGGTTGCAATGAAGCTCCAGGTC...GAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp TGCATAGTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTTCCGTTGTAGTGCCTaGCGAAGTGGATGGAGCAGA +
Preference number: 4 (lower is better)
Translates to: CIVEANSIVLCWRTHSRCFRCSA*RSGWSR
Trigger: TCTGCTCCATCCACTTCGGCAGGCACTACAACGGAA...GCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTATGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp CACAGCATAGCCGTTCTCATTGAGATAGGTTTTGACGATGACCACTCGGAGCTGAAGTCAGAAAACACATaGACACTAAGAAGCAGCGAG +
Preference number: 4 (lower is better)
Translates to: HSIAVLIEIGFDDDHSELKSENT*TLRSSE
Trigger: CTCGCTGCTTCTTAGTGTGCATGTGTTTTCTGACTT...CAGCTCCGAGTGGTCATCGTCAAAACCTATCTCAATGAGAACGGCTATGCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR GCA 90 bp ATAGTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCATGCACTCCGCATTCCTaGTGCCAGAGCATACAGGTG +
Preference number: 4 (lower is better)
Translates to: IVEANSIVLCWRTHSRCSCTPHS*CQSIQV
Trigger: CACCTGTATGCTCTGGCAGCAGGAATGCGGAGTGCA...TGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp TGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCTGCACCTCCGCCTCTaGAATCCGTCCTCTTTGTAC +
Preference number: 4 (lower is better)
Translates to: CGGLQKERRHRCFSTCRILHLRL*NPSSLY
Trigger: GTACAAAGAGGACGGATTGCAGAGGCGGAGGTGCAG...AATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATATGGAGCAGAAGGGCTaGGGACTATCAAGTTCCGTC +
Preference number: 4 (lower is better)
Translates to: LWRFTKRKKAQVFLNLPYMEQKG*GLSSSV
Trigger: GACGGAACTTGATAGTCCCCAGCCCTTCTGCTCCAT...ATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAATCCCTGGGGTCCATCCTGTaGTTACAGTCCATGAGTTCC +
Preference number: 4 (lower is better)
Translates to: KKAQVFLNLPYSTQPTKSLGSIL*LQSMSS
Trigger: GGAACTCATGGACTGTAACCACAGGATGGACCCCAG...GGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp GTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCCTGGGGTCCATCCTGTaGTTACAGTCCATGAGTTCC +
Preference number: 4 (lower is better)
Translates to: VEVYKKKEGTGVSQLAVFLGSIL*LQSMSS
Trigger: GGAACTCATGGACTGTAACCACAGGATGGACCCCAG...GAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CCTGAAAACAGAATCCAGCTTGATTTTTATGTGTGCTCACCAGAGTGCCTAACACTGGGGTCCATCCTGTaGTTACAGTCCATGAGTTCC +
Preference number: 4 (lower is better)
Translates to: PENRIQLDFYVCSPECLTLGSIL*LQSMSS
Trigger: GGAACTCATGGACTGTAACCACAGGATGGACCCCAG...TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAGCTGGATTCTGTTTTCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp GAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTAGAGACCATTAACGCCTaGATGAAAGTCAGAAAACAC +
Preference number: 4 (lower is better)
Translates to: ERLSVLLRYPALINSGCVETINA*MKVRKH
Trigger: GTGTTTTCTGACTTTCATCCAGGCGTTAATGGTCTC...TACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp GCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTATACTGGAGACCATTAACGCCTaGATGAAAGTCAGAAAACAC +
Preference number: 4 (lower is better)
Translates to: AVSLVEVSSPHQQWLCILETINA*MKVRKH
Trigger: GTGTTTTCTGACTTTCATCCAGGCGTTAATGGTCTC...CAGTATACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp TGCATAGTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCCCCCGCTGCAGATCATaGCTAGCTTTGCAGATTCTC +
Preference number: 4 (lower is better)
Translates to: CIVEANSIVLCWRTHSRCPRCRS*LALQIL
Trigger: GAGAATCTGCAAAGCTAGCCATGATCTGCAGCGGGG...GCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp GAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAAATCTAACTCACAGTGCTCAGTaGGAATTCCCTGCACCTCCG +
Preference number: 4 (lower is better)
Translates to: EANSIVLCWRTHSRCSNLTHSAQ*EFPAPP
Trigger: CGGAGGTGCAGGGAATTCCCACTGAGCACTGTGAGT...TAGATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp GATGATGTCTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTCAGCTTTGCTGGGCTaGCCCACTTGCTCACTCACA +
Preference number: 4 (lower is better)
Translates to: DDVCGGLQKERRHRCFSTSALLG*PTCSLT
Trigger: TGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGA...AGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAGACATCATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 72 bp CTTGCACACTGTAGTGCACATCCCAGGTCAATGTCTTaGAGTTCTGACCTCAGCCTTCCAAAGGATTTCATG +
Preference number: 4 (lower is better)
Translates to: LAHCSAHPRSMS*SSDLSLPKDFM
Trigger: CATGAAATCCTTTGGAAGGCTGAGGTCAGAACTCAAAGACATTGACCTGGGATGTGCACTACAGTGTGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp AAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAGTGGAGTTGCCATTCTaGCAAAGGCCATCGTTGGAG +
Preference number: 4 (lower is better)
Translates to: KKEGTGVSQLAVFNSTNKVELPF*QRPSLE
Trigger: CTCCAACGATGGCCTTTGTCAGAATGGCAACTCCAC...TTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp CCTGAAAACAGAATCCAGCTTGATTTTTATGTGTGCTCACCAGAGTGCCTAACATCACTCTGGTCAAGGTaGACAGGATTTCTGGGATCC +
Preference number: 4 (lower is better)
Translates to: PENRIQLDFYVCSPECLTSLWSR*TGFLGS
Trigger: GGATCCCAGAAATCCTGTTCACCTTGACCAGAGTGA...TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAGCTGGATTCTGTTTTCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp TGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTTCCACCAGTTTCCGATaGAACGAGGGTCACTCTGGT +
Preference number: 4 (lower is better)
Translates to: CGGLQKERRHRCFSTCRISTSFR*NEGHSG
Trigger: ACCAGAGTGACCCTCGTTTCATCGGAAACTGGTGGA...AATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp CTAATGATATGTGTGGTCATAGCCTTTCCCATGGCTAACCATGGACCTCAGGCTAAGTCAGAAAACACATaGACACTAAGAAGCAGCGAG +
Preference number: 4 (lower is better)
Translates to: LMICVVIAFPMANHGPQAKSENT*TLRSSE
Trigger: CTCGCTGCTTCTTAGTGTGCATGTGTTTTCTGACTT...AGCCTGAGGTCCATGGTTAGCCATGGGAAAGGCTATGACCACACATATCATTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp CTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTACTAAGTCAGAAAACACATaGACACTAAGAAGCAGCGAG +
Preference number: 4 (lower is better)
Translates to: LLGSTLLVYFLQHMSGPTKSENT*TLRSSE
Trigger: CTCGCTGCTTCTTAGTGTGCATGTGTTTTCTGACTT...AGTAGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp CTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATCGCAACAAAACAAACTaGATTCCCAACGCGAAGGGC +
Preference number: 4 (lower is better)
Translates to: LWRFTKRKKAQVFLNLPYRNKTN*IPNAKG
Trigger: GCCCTTCGCGTTGGGAATGCAGTTTGTTTTGTTGCG...ATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp GTGGCTCTCATAGATATGTACTATGTTTCTTGTATTCATACAAGGAAATGTCTCTCCCAGCAAGAGCCCTaGACTCCGCATTCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: VALIDMYYVSCIHTRKCLSQQEP*TPHSCC
Trigger: GCAGCAGGAATGCGGAGTGCAGGGCTCTTGCTGGGA...GAGACATTTCCTTGTATGAATACAAGAAACATAGTACATATCTATGAGAGCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAAATGGAGCAGAAGGGCTaGGGACTATCAAGTTCCGTC +
Preference number: 4 (lower is better)
Translates to: RKKAQVFLNLPYSTQPTKMEQKG*GLSSSV
Trigger: GACGGAACTTGATAGTCCCCAGCCCTTCTGCTCCAT...TTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATAGACACCTTCTCTCCTaGAGTGTGGCCAAAGTGGAA +
Preference number: 4 (lower is better)
Translates to: LWRFTKRKKAQVFLNLPYRHLLS*SVAKVE
Trigger: TTCCACTTTGGCCACACTCCAGGAGAGAAGGTGTCT...ATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTACCAAGAAACATTGCAATaGCACAAAGAAGGAATCCAC +
Preference number: 4 (lower is better)
Translates to: PAGLHIACLFSPTYVWPYQETLQ*HKEGIH
Trigger: GTGGATTCCTTCTTTGTGCCATTGCAATGTTTCTTG...GTAGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp ATAGTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCACCCCGCTGCAGATCATaGCTAGCTTTGCAGATTCTC +
Preference number: 4 (lower is better)
Translates to: IVEANSIVLCWRTHSRCSPRCRS*LALQIL
Trigger: GAGAATCTGCAAAGCTAGCCATGATCTGCAGCGGGG...TGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp GTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAAATAGAGCAGTTTCTTCATaGACTTCCCCCTGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: VEANSIVLCWRTHSRCSNRAVSS*TSPWVL
Trigger: CAGCACCCAGGGGGAAGTCCATGAAGAAACTGCTCT...ATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp TCATATTCGTGTATTTTACAGCCACAATTAACATTACAGCTTCCTGTCAGATTCCTGCATTCCCAGCACTaGAATTCTGCCGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: SYSCILQPQLTLQLPVRFLHSQH*NSAGRR
Trigger: CCTCCTGCCGGCAGAATTTCAGTGCTGGGAATGCAG...GAATCTGACAGGAAGCTGTAATGTTAATTGTGGCTGTAAAATACACGAATATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp CTTTTCTCAGTGGCAACAGTGATAACCTTGACCTTCAGATTCATTAAAAAGACCCTATATCAAAGCAGCTaGCCAGCAGCCCTGACTCAG +
Preference number: 4 (lower is better)
Translates to: LFSVATVITLTFRFIKKTLYQSS*PAALTQ
Trigger: CTGAGTCAGGGCTGCTGGTCAGCTGCTTTGATATAG...GGTCTTTTTAATGAATCTGAAGGTCAAGGTTATCACTGTTGCCACTGAGAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp GACTGGCTCATATTCGTGTATTTTACAGCCACAATTAACATTACAGCTTCCTGTTCCACCAGTTTCCGATaGAACGAGGGTCACTCTGGT +
Preference number: 4 (lower is better)
Translates to: DWLIFVYFTATINITASCSTSFR*NEGHSG
Trigger: ACCAGAGTGACCCTCGTTTCATCGGAAACTGGTGGA...ACAGGAAGCTGTAATGTTAATTGTGGCTGTAAAATACACGAATATGAGCCAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp AGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAATCCATGGGATACCAAACTGTaGCTCGATGAACTTGGGGAT +
Preference number: 4 (lower is better)
Translates to: RRHRCFSTCRIQLNQQNPWDTKL*LDELGD
Trigger: ATCCCCAAGTTCATCGAGTCACAGTTTGGTATCCCA...TGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp CTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTGGGATACCAAACTGTaGCTCGATGAACTTGGGGAT +
Preference number: 4 (lower is better)
Translates to: LWRFTKRKKAQVFLNLPYWDTKL*LDELGD
Trigger: ATCCCCAAGTTCATCGAGTCACAGTTTGGTATCCCA...ATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp TGCATAGTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTGGGATACCAAACTGTaGCTCGATGAACTTGGGGAT +
Preference number: 4 (lower is better)
Translates to: CIVEANSIVLCWRTHSRCWDTKL*LDELGD
Trigger: ATCCCCAAGTTCATCGAGTCACAGTTTGGTATCCCA...GCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTATGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp AGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAATCCAAGTCACTATAATGGCTaGTGGTTGGGCACATGCTGT +
Preference number: 4 (lower is better)
Translates to: RRHRCFSTCRIQLNQQNPSHYNG*WLGTCC
Trigger: ACAGCATGTGCCCAACCATCAGCCATTATAGTGACT...TGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp CCAAAGGGACATGCCACACTTTTCTATTTCCAATCAAATTGCATAGTTGAAGCAAACCCAAGGCCAGTTTaGCATCTGCATTCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: PKGHATLFYFQSNCIVEANPRPV*HLHSQH
Trigger: GTGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTT...TGCTTCAACTATGCAATTTGATTGGAAATAGAAAAGTGTGGCATGTCCCTTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp CTTTTCTCAGTGGCAACAGTGATAACCTTGACCTTCAGATTCATTAAAAAGACCTTCCGTTGTAGTGCCTaGCGAAGTGGATGGAGCAGA +
Preference number: 4 (lower is better)
Translates to: LFSVATVITLTFRFIKKTFRCSA*RSGWSR
Trigger: TCTGCTCCATCCACTTCGGCAGGCACTACAACGGAA...GGTCTTTTTAATGAATCTGAAGGTCAAGGTTATCACTGTTGCCACTGAGAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp GATGATGTCTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTACTGCAGGGCCGAGTaGTCCCATGACATACATGAT +
Preference number: 4 (lower is better)
Translates to: DDVCGGLQKERRHRCFSTYCRAE*SHDIHD
Trigger: ATCATGTATGTCATGGGAGCACTCGGCCCTGCAGTA...AGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAGACATCATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAATCCTTCTCTCCTGGAGTGTaGCCAAAGTGGAAGATACTG +
Preference number: 4 (lower is better)
Translates to: KKAQVFLNLPYSTQPTKSFSPGV*PKWKIL
Trigger: CAGTATCTTCCACTTTGGCCACACTCCAGGAGAGAA...GGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp GCAAGACACAAAGGTCAGGAACTCTTCTTGATGTTACTTGATGTTACCAAACAAGAGGAGGCTCCAAGATaGCTGTGGAGTTGCCATTCT +
Preference number: 4 (lower is better)
Translates to: ARHKGQELFLMLLDVTKQEEAPR*LWSCHS
Trigger: AGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTC...TTGTTTGGTAACATCAAGTAACATCAAGAAGAGTTCCTGACCTTTGTGTCTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp AAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCAAGAAACATTGCAATaGCACAAAGAAGGAATCCAC +
Preference number: 4 (lower is better)
Translates to: KPCWAPHCLSIFSNICLAQETLQ*HKEGIH
Trigger: GTGGATTCCTTCTTTGTGCCATTGCAATGTTTCTTG...GGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp CTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATCCGGATATGTCTGTGTaGTGCATGGGAATCCCTTTT +
Preference number: 4 (lower is better)
Translates to: LWRFTKRKKAQVFLNLPYPDMSV*CMGIPF
Trigger: AAAAGGGATTCCCATGCACCACACAGACATATCCGG...ATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 72 bp ATATTTCCTGAGGTCGCCTTACATGACATGAGGTTCTaGACAGAGAGGCCACAATTTTATGGCGTATTGGAC +
Preference number: 4 (lower is better)
Translates to: IFPEVALHDMRF*TERPQFYGVLD
Trigger: GTCCAATACGCCATAAAATTGTGGCCTCTCTGTCAAGAACCTCATGTCATGTAAGGCGACCTCAGGAAATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 72 bp GAATTAGCGTGCTTGGCTTCTAGGCTATTCTGGGGCTaGCAACATTCTGGTTTCTATCACTACATAGAATCC +
Preference number: 4 (lower is better)
Translates to: ELACLASRLFWG*QHSGFYHYIES
Trigger: GGATTCTATGTAGTGATAGAAACCAGAATGTTGCAAGCCCCAGAATAGCCTAGAAGCCAAGCACGCTAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp GTCTATTTTCTCCAACATATGTCTGGCCCTACTAATGTAGAACATGCTGTTAGATCACTCTGGTCAAGGTaGACAGGATTTCTGGGATCC +
Preference number: 4 (lower is better)
Translates to: VYFLQHMSGPTNVEHAVRSLWSR*TGFLGS
Trigger: GGATCCCAGAAATCCTGTTCACCTTGACCAGAGTGA...TCTAACAGCATGTTCTACATTAGTAGGGCCAGACATATGTTGGAGAAAATAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp GTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAAATCTCTTGGTAGGTCTCTaGCATTCTTTCCAAAGCCCA +
Preference number: 4 (lower is better)
Translates to: VEANSIVLCWRTHSRCSNLLVGL*HSFQSP
Trigger: TGGGCTTTGGAAAGAATGTCAGAGACCTACCAAGAG...ATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp AGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAATGTTGCTTAAGATCCTaGCAGCTGCTCTTGGTAGGT +
Preference number: 4 (lower is better)
Translates to: RKKAQVFLNLPYSTQPTKCCLRS*QLLLVG
Trigger: ACCTACCAAGAGCAGCTGTCAGGATCTTAAGCAACA...TTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp TGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTAGTCACTATAATGGCTaGTGGTTGGGCACATGCTGT +
Preference number: 4 (lower is better)
Translates to: CGGLQKERRHRCFSTCRISHYNG*WLGTCC
Trigger: ACAGCATGTGCCCAACCATCAGCCATTATAGTGACT...AATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp GTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAAATAGTCACTATAATGGCTaGTGGTTGGGCACATGCTGT +
Preference number: 4 (lower is better)
Translates to: VEANSIVLCWRTHSRCSNSHYNG*WLGTCC
Trigger: ACAGCATGTGCCCAACCATCAGCCATTATAGTGACT...ATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp GTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAAATAGATGGCTGTGGAGTTaGCATTCTGACAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: VEANSIVLCWRTHSRCSNRWLWS*HSDKGH
Trigger: ATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCT...ATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp GCAAGACACAAAGGTCAGGAACTCTTCTTGATGTTACTTGATGTTACCAAACAATACTGCAGGGCCGAGTaGTCCCATGACATACATGAT +
Preference number: 4 (lower is better)
Translates to: ARHKGQELFLMLLDVTKQYCRAE*SHDIHD
Trigger: ATCATGTATGTCATGGGAGCACTCGGCCCTGCAGTA...TTGTTTGGTAACATCAAGTAACATCAAGAAGAGTTCCTGACCTTTGTGTCTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp GTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAAATTATTGCAGGTGCGTTTaGACTTCCCAGACACAGCAT +
Preference number: 4 (lower is better)
Translates to: VEANSIVLCWRTHSRCSNYCRCV*TSQTQH
Trigger: ATGCTGTGTCTGGGAAGTGCAAACGCACCTGCAATA...ATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp TTGCAAATGCAAAGTCATGGTCAAGCTCACCTTTATCTGGAGTGTATGCTAATGTATTGCAGGTGCGTTTaGACTTCCCAGACACAGCAT +
Preference number: 4 (lower is better)
Translates to: LQMQSHGQAHLYLECMLMYCRCV*TSQTQH
Trigger: ATGCTGTGTCTGGGAAGTGCAAACGCACCTGCAATA...CATTAGCATACACTCCAGATAAAGGTGAGCTTGACCATGACTTTGCATTTGCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp AAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAATCCCATGGGAATCCCTTTTaGAGAGCAGTTTCTTCATGG +
Preference number: 4 (lower is better)
Translates to: KKAQVFLNLPYSTQPTKSHGNPF*RAVSSW
Trigger: CCATGAAGAAACTGCTCTGCAAAAGGGATTCCCATG...GGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp GTCTATTTTCTCCAACATATGTCTGGCCCTACTAATGTAGAACATGCTGTTAGAGAAGGTCAGTGTAGATaGTGGCATTGGAAGCTGGGA +
Preference number: 4 (lower is better)
Translates to: VYFLQHMSGPTNVEHAVREGQCR*WHWKLG
Trigger: TCCCAGCTTCCAATGCCAGCATCTACACTGACCTTC...TCTAACAGCATGTTCTACATTAGTAGGGCCAGACATATGTTGGAGAAAATAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp CCATCTGATCCACAGACTGGCTCATATTCGTGTATTTTACAGCCACAATTAACATTCTCTCCTGGAGTGTaGCCAAAGTGGAAGATACTG +
Preference number: 4 (lower is better)
Translates to: PSDPQTGSYSCILQPQLTFSPGV*PKWKIL
Trigger: CAGTATCTTCCACTTTGGCCACACTCCAGGAGAGAA...TGTTAATTGTGGCTGTAAAATACACGAATATGAGCCAGTCTGTGGATCAGATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp CCAAAGGGACATGCCACACTTTTCTATTTCCAATCAAATTGCATAGTTGAAGCAAGACACCTTCTCTCCTaGAGTGTGGCCAAAGTGGAA +
Preference number: 4 (lower is better)
Translates to: PKGHATLFYFQSNCIVEARHLLS*SVAKVE
Trigger: TTCCACTTTGGCCACACTCCAGGAGAGAAGGTGTCT...TGCTTCAACTATGCAATTTGATTGGAAATAGAAAAGTGTGGCATGTCCCTTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp GTCTATTTTCTCCAACATATGTCTGGCCCTACTAATGTAGAACATGCTGTTAGACACCAGTGTAGATGCTaGCATTGGAAGCTGGGATAC +
Preference number: 4 (lower is better)
Translates to: VYFLQHMSGPTNVEHAVRHQCRC*HWKLGY
Trigger: GTATCCCAGCTTCCAATGCCAGCATCTACACTGGTG...TCTAACAGCATGTTCTACATTAGTAGGGCCAGACATATGTTGGAGAAAATAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR CCA 90 bp TTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACGCCAGAGCATACAGGTaGTGTCAATCACAGCTCCAA +
Preference number: 4 (lower is better)
Translates to: LQKERRHRCFSTCRIQLNARAYR*CQSQLQ
Trigger: TTGGAGCTGTGATTGACACCACCTGTATGCTCTGGC...GTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp GCAAGACACAAAGGTCAGGAACTCTTCTTGATGTTACTTGATGTTACCAAACAACTCTTGGTAGGTCTCTaGCATTCTTTCCAAAGCCCA +
Preference number: 4 (lower is better)
Translates to: ARHKGQELFLMLLDVTKQLLVGL*HSFQSP
Trigger: TGGGCTTTGGAAAGAATGTCAGAGACCTACCAAGAG...TTGTTTGGTAACATCAAGTAACATCAAGAAGAGTTCCTGACCTTTGTGTCTTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp GCAAGACACAAAGGTCAGGAACTCTTCTTGATGTTACTTGATGTTACCAAACAATGTTGCTTAAGATCCTaGCAGCTGCTCTTGGTAGGT +
Preference number: 4 (lower is better)
Translates to: ARHKGQELFLMLLDVTKQCCLRS*QLLLVG
Trigger: ACCTACCAAGAGCAGCTGTCAGGATCTTAAGCAACA...TTGTTTGGTAACATCAAGTAACATCAAGAAGAGTTCCTGACCTTTGTGTCTTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000147606.3
CDS-3UTR TCA 90 bp GAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAAATCTAGTAGACAAAACGAAATaGCGTCACGTTGTACTCCCA +
Preference number: 4 (lower is better)
Translates to: EANSIVLCWRTHSRCSNLVDKTK*RHVVLP
Trigger: TGGGAGTACAACGTGACGTCATTTCGTTTTGTCTAC...TAGATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp TCATATTCGTGTATTTTACAGCCACAATTAACATTACAGCTTCCTGTCAGATTCTTCCGTTGTAGTGCCTaGCGAAGTGGATGGAGCAGA +
Preference number: 4 (lower is better)
Translates to: SYSCILQPQLTLQLPVRFFRCSA*RSGWSR
Trigger: TCTGCTCCATCCACTTCGGCAGGCACTACAACGGAA...GAATCTGACAGGAAGCTGTAATGTTAATTGTGGCTGTAAAATACACGAATATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp CTTTTCTCAGTGGCAACAGTGATAACCTTGACCTTCAGATTCATTAAAAAGACCAGATGGCTGTGGAGTTaGCATTCTGACAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: LFSVATVITLTFRFIKKTRWLWS*HSDKGH
Trigger: ATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCT...GGTCTTTTTAATGAATCTGAAGGTCAAGGTTATCACTGTTGCCACTGAGAAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp TTGCAAATGCAAAGTCATGGTCAAGCTCACCTTTATCTGGAGTGTATGCTAATGCATGGGAATCCCTTTTaGAGAGCAGTTTCTTCATGG +
Preference number: 4 (lower is better)
Translates to: LQMQSHGQAHLYLECMLMHGNPF*RAVSSW
Trigger: CCATGAAGAAACTGCTCTGCAAAAGGGATTCCCATG...CATTAGCATACACTCCAGATAAAGGTGAGCTTGACCATGACTTTGCATTTGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp TGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTGATATGTCTGTGTGGTaGATGGGAATCCCTTTTGCA +
Preference number: 4 (lower is better)
Translates to: CGGLQKERRHRCFSTCRIDMSVW*MGIPFA
Trigger: TGCAAAAGGGATTCCCATGCACCACACAGACATATC...AATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp CTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATGAGACCATTAACGCCTaGATGAAAGTCAGAAAACAC +
Preference number: 4 (lower is better)
Translates to: LWRFTKRKKAQVFLNLPYETINA*MKVRKH
Trigger: GTGTTTTCTGACTTTCATCCAGGCGTTAATGGTCTC...ATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp ATGTTACTTTTTACTAAATGGAAATCAACTGAACTAGTTCTCATGGTGCCTGCTGAGGAGGCTCCAAGATaGCTGTGGAGTTGCCATTCT +
Preference number: 4 (lower is better)
Translates to: MLLFTKWKSTELVLMVPAEEAPR*LWSCHS
Trigger: AGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTC...AGCAGGCACCATGAGAACTAGTTCAGTTGATTTCCATTTAGTAAAAAGTAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp ATGTTACTTTTTACTAAATGGAAATCAACTGAACTAGTTCTCATGGTGCCTGCTCCCCGCTGCAGATCATaGCTAGCTTTGCAGATTCTC +
Preference number: 4 (lower is better)
Translates to: MLLFTKWKSTELVLMVPAPRCRS*LALQIL
Trigger: GAGAATCTGCAAAGCTAGCCATGATCTGCAGCGGGG...AGCAGGCACCATGAGAACTAGTTCAGTTGATTTCCATTTAGTAAAAAGTAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
CDS-3UTR CCA 90 bp GTGGCTCTCATAGATATGTACTATGTTTCTTGTATTCATACAAGGAAATGTCTCGCAGCCAGCCAGACATaGGTTGAAGTATGTGATCCC +
Preference number: 4 (lower is better)
Translates to: VALIDMYYVSCIHTRKCLAASQT*VEVCDP
Trigger: GGGATCACATACTTCAACCCATGTCTGGCTGGCTGC...GAGACATTTCCTTGTATGAATACAAGAAACATAGTACATATCTATGAGAGCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAATAATGGCTGATGGTTaGGCACATGCTGTGATGAAG +
Preference number: 4 (lower is better)
Translates to: KKEGTGVSQLAVFNSTNKIMADG*AHAVMK
Trigger: CTTCATCACAGCATGTGCCCAACCATCAGCCATTAT...TTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp GAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAAATCTAATAATGGCTGATGGTTaGGCACATGCTGTGATGAAG +
Preference number: 4 (lower is better)
Translates to: EANSIVLCWRTHSRCSNLIMADG*AHAVMK
Trigger: CTTCATCACAGCATGTGCCCAACCATCAGCCATTAT...TAGATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR TCA 90 bp ATGTTACTTTTTACTAAATGGAAATCAACTGAACTAGTTCTCATGGTGCCTGCTCCATCACCTGTCTCATaGTGCTGGCCTCACAATAGA +
Preference number: 4 (lower is better)
Translates to: MLLFTKWKSTELVLMVPAPSPVS*CWPHNR
Trigger: TCTATTGTGAGGCCAGCATCATGAGACAGGTGATGG...AGCAGGCACCATGAGAACTAGTTCAGTTGATTTCCATTTAGTAAAAAGTAACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR GCA 90 bp ATGTTACTTTTTACTAAATGGAAATCAACTGAACTAGTTCTCATGGTGCCTGCTTACTGCAGGGCCGAGTaGTCCCATGACATACATGAT +
Preference number: 4 (lower is better)
Translates to: MLLFTKWKSTELVLMVPAYCRAE*SHDIHD
Trigger: ATCATGTATGTCATGGGAGCACTCGGCCCTGCAGTA...AGCAGGCACCATGAGAACTAGTTCAGTTGATTTCCATTTAGTAAAAAGTAACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR GCA 90 bp GTGGCTCTCATAGATATGTACTATGTTTCTTGTATTCATACAAGGAAATGTCTCTACTGCAGGGCCGAGTaGTCCCATGACATACATGAT +
Preference number: 4 (lower is better)
Translates to: VALIDMYYVSCIHTRKCLYCRAE*SHDIHD
Trigger: ATCATGTATGTCATGGGAGCACTCGGCCCTGCAGTA...GAGACATTTCCTTGTATGAATACAAGAAACATAGTACATATCTATGAGAGCCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp ATGTTACTTTTTACTAAATGGAAATCAACTGAACTAGTTCTCATGGTGCCTGCTCTGACACAGTTTTGCTaGGGTCCATCCTGTGGTTAC +
Preference number: 4 (lower is better)
Translates to: MLLFTKWKSTELVLMVPALTQFC*GPSCGY
Trigger: GTAACCACAGGATGGACCCCAGCAAAACTGTGTCAG...AGCAGGCACCATGAGAACTAGTTCAGTTGATTTCCATTTAGTAAAAAGTAACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp CCATCTGATCCACAGACTGGCTCATATTCGTGTATTTTACAGCCACAATTAACAGAGACCATTAACGCCTaGATGAAAGTCAGAAAACAC +
Preference number: 4 (lower is better)
Translates to: PSDPQTGSYSCILQPQLTETINA*MKVRKH
Trigger: GTGTTTTCTGACTTTCATCCAGGCGTTAATGGTCTC...TGTTAATTGTGGCTGTAAAATACACGAATATGAGCCAGTCTGTGGATCAGATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CCA 90 bp TCAATCTTAGTACCAAAACAGGTCCAAGTCCACCAGAAATCTCTTCATATAATACACCAGTGTAGATGCTaGCATTGGAAGCTGGGATAC +
Preference number: 4 (lower is better)
Translates to: SILVPKQVQVHQKSLHIIHQCRC*HWKLGY
Trigger: GTATCCCAGCTTCCAATGCCAGCATCTACACTGGTG...TATTATATGAAGAGATTTCTGGTGGACTTGGACCTGTTTTGGTACTAAGATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp TTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACATAATGGCTGATGGTTaGGCACATGCTGTGATGAAG +
Preference number: 4 (lower is better)
Translates to: LQKERRHRCFSTCRIQLNIMADG*AHAVMK
Trigger: CTTCATCACAGCATGTGCCCAACCATCAGCCATTAT...GTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp TGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAAGAAACATTGCAATaGCACAAAGAAGGAATCCAC +
Preference number: 4 (lower is better)
Translates to: CGGLQKERRHRCFSTCRIQETLQ*HKEGIH
Trigger: GTGGATTCCTTCTTTGTGCCATTGCAATGTTTCTTG...AATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp AGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAACAAGAAACATTGCAATaGCACAAAGAAGGAATCCAC +
Preference number: 4 (lower is better)
Translates to: RKKAQVFLNLPYSTQPTKQETLQ*HKEGIH
Trigger: GTGGATTCCTTCTTTGTGCCATTGCAATGTTTCTTG...TTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp TTCTGGTTTCTATCACTACATAGAATCCTCAGCATGTACCTCTGCAGCAAGTTACAAGAAACATTGCAATaGCACAAAGAAGGAATCCAC +
Preference number: 4 (lower is better)
Translates to: FWFLSLHRILSMYLCSKLQETLQ*HKEGIH
Trigger: GTGGATTCCTTCTTTGTGCCATTGCAATGTTTCTTG...TAACTTGCTGCAGAGGTACATGCTGAGGATTCTATGTAGTGATAGAAACCAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 72 bp CTTAAATTAAACCTCTTCAGACAAACACAAATCTGGTaGAAACACAACAGGAAGTCTGGGACAGACAATGCC +
Preference number: 4 (lower is better)
Translates to: LKLNLFRQTQIW*KHNRKSGTDNA
Trigger: GGCATTGTCTGTCCCAGACTTCCTGTTGTGTTTCAACCAGATTTGTGTTTGTCTGAAGAGGTTTAATTTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR GCA 90 bp TCAATCTTAGTACCAAAACAGGTCCAAGTCCACCAGAAATCTCTTCATATAATAAAGTCAGAAAACACATaGACACTAAGAAGCAGCGAG +
Preference number: 4 (lower is better)
Translates to: SILVPKQVQVHQKSLHIIKSENT*TLRSSE
Trigger: CTCGCTGCTTCTTAGTGTGCATGTGTTTTCTGACTT...TATTATATGAAGAGATTTCTGGTGGACTTGGACCTGTTTTGGTACTAAGATTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CCA 90 bp ATGTTACTTTTTACTAAATGGAAATCAACTGAACTAGTTCTCATGGTGCCTGCTGAGACCATTAACGCCTaGATGAAAGTCAGAAAACAC +
Preference number: 4 (lower is better)
Translates to: MLLFTKWKSTELVLMVPAETINA*MKVRKH
Trigger: GTGTTTTCTGACTTTCATCCAGGCGTTAATGGTCTC...AGCAGGCACCATGAGAACTAGTTCAGTTGATTTCCATTTAGTAAAAAGTAACAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
3UTR CAA 72 bp TTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTaGCCGTATTCAACTCAACCAACAAAATCCATCTGT +
Preference number: 4 (lower is better)
Translates to: FTKRKKAQVFLN*PYSTQPTKSIC
Trigger: ACAGATGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
3UTR CAA 72 bp CACACACACACACTTCACAGATATCCTAATACCAGTTaGACACAGTTTCACATTTCCTTACACTACAAAGTT +
Preference number: 4 (lower is better)
Translates to: HTHTLHRYPNTS*TQFHISLHYKV
Trigger: AACTTTGTAGTGTAAGGAAATGTGAAACTGTGTCAAACTGGTATTAGGATATCTGTGAAGTGTGTGTGTGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS CCA 90 bp TTCCTCCCGAGTCCTTGGGACAGGGAGGAGGCTCCAAGATGGCTGTaGAGTTGCCATTCTGACAAAGGCCATCGTTGGAGGCCGAAGCGT +
Preference number: 5 (lower is better)
Translates to: FLPSPWDREEAPRWL*SCHSDKGHRWRPKR
Trigger: ACGCTTCGGCCTCCAACGATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTCCCTGTCCCAAGGACTCGGGAGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS GCA 90 bp CCGAGTCCTTGGGACAGGGAGGAGGCTCCAAGATGGCTGTGGAGTTaGCATTCTGACAAAGGCCATCGTTGGAGGCCGAAGCGTTCAACT +
Preference number: 5 (lower is better)
Translates to: PSPWDREEAPRWLWS*HSDKGHRWRPKRST
Trigger: AGTTGAACGCTTCGGCCTCCAACGATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTCCCTGTCCCAAGGACTCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS CCA 90 bp GACTATTTCCTCCCGAGTCCTTGGGACAGGGAGGAGGCTCCAAGATaGCTGTGGAGTTGCCATTCTGACAAAGGCCATCGTTGGAGGCCG +
Preference number: 5 (lower is better)
Translates to: DYFLPSPWDREEAPR*LWSCHSDKGHRWRP
Trigger: CGGCCTCCAACGATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTCCCTGTCCCAAGGACTCGGGAGGAAATAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS GCA 90 bp CCATCTGCATTCCCAGCACTGAAATTCTGCCGGCAGGAGGCGCTGTaGAGGACCGGTAAACTCTTAGACCTGAAGGACTCTGACTCGCAC +
Preference number: 5 (lower is better)
Translates to: PSAFPALKFCRQEAL*RTGKLLDLKDSDSH
Trigger: GTGCGAGTCAGAGTCCTTCAGGTCTAAGAGTTTACCGGTCCTGCACAGCGCCTCCTGCCGGCAGAATTTCAGTGCTGGGAATGCAGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS GCA 90 bp CAACCCAAGGCCAGTTTGCCATCTGCATTCCCAGCACTGAAATTCTaGCGGCAGGAGGCGCTGTGCAGGACCGGTAAACTCTTAGACCTG +
Preference number: 5 (lower is better)
Translates to: QPKASLPSAFPALKF*RQEALCRTGKLLDL
Trigger: CAGGTCTAAGAGTTTACCGGTCCTGCACAGCGCCTCCTGCCGGCAGAATTTCAGTGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS GCA 90 bp GGGGTCCATCCTGTGGTTACAGTCCATGAGTTCCGTTGTAGTGCCTaGCGAAGTGGATGGAGCAGAAGGGCTGGGGACTATCAAGTTCCG +
Preference number: 5 (lower is better)
Translates to: GVHPVVTVHEFRCSA*RSGWSRRAGDYQVP
Trigger: CGGAACTTGATAGTCCCCAGCCCTTCTGCTCCATCCACTTCGGCAGGCACTACAACGGAACTCATGGACTGTAACCACAGGATGGACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp AGGGGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGGGGCGGGGTGATCACTaGTCGGCTTTGGACACAGGT +
Preference number: 5 (lower is better)
Translates to: RGKAVSLVEVSSPHQQWLGRGDH*SALDTG
Trigger: ACCTGTGTCCAAAGCCGACAAGTGATCACCCCGCCC...CAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS TCA 90 bp CTTCATTGCAACCCAAGGCCAGTTTGCCATCTGCATTCCCAGCACTaGAATTCTGCCGGCAGGAGGCGCTGTGCAGGACCGGTAAACTCT +
Preference number: 5 (lower is better)
Translates to: LHCNPRPVCHLHSQH*NSAGRRRCAGPVNS
Trigger: AGAGTTTACCGGTCCTGCACAGCGCCTCCTGCCGGCAGAATTTCAGTGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTTGCAATGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS CCA 90 bp ACCGGTAAACTCTTAGACCTGAAGGACTCTGACTCGCACTTCTCTTaGACAGCTCCAACCGAAGACGGTGCCTCTAGCTGCTGTTGGGCC +
Preference number: 5 (lower is better)
Translates to: TGKLLDLKDSDSHFS*TAPTEDGASSCCWA
Trigger: GGCCCAACAGCAGCTAGAGGCACCGTCTTCGGTTGGAGCTGTCCAAGAGAAGTGCGAGTCAGAGTCCTTCAGGTCTAAGAGTTTACCGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp AGCCCAGAAGAGCACGTATGGGTGCCTGCCAGCAGCTTTTCCTTCCTATCCCCTGATACTGACACAGTTTaGCTGGGGTCCATCCTGTGG +
Preference number: 5 (lower is better)
Translates to: SPEEHVWVPASSFSFLSPDTDTV*LGSILW
Trigger: CCACAGGATGGACCCCAGCAAAACTGTGTCAGTATC...AGGGGATAGGAAGGAAAAGCTGCTGGCAGGCACCCATACGTGCTCTTCTGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS TCA 90 bp TTGGGACAGGGAGGAGGCTCCAAGATGGCTGTGGAGTTGCCATTCTaGCAAAGGCCATCGTTGGAGGCCGAAGCGTTCAACTCTTGGATT +
Preference number: 5 (lower is better)
Translates to: LGQGGGSKMAVELPF*QRPSLEAEAFNSWI
Trigger: AATCCAAGAGTTGAACGCTTCGGCCTCCAACGATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTCCCTGTCCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp AGTCCGGGAGTACTTCTCAGCTTTGCTGGGCTGGCCCACTTGCTCACTCACAGTAAGGGAATGAGGGTATaGCAGGTGCGTTTGCACTTC +
Preference number: 5 (lower is better)
Translates to: SPGVLLSFAGLAHLLTHSKGMRV*QVRLHF
Trigger: GAAGTGCAAACGCACCTGCAATACCCTCATTCCCTT...ACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGAGAAGTACTCCCGGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR CAA 90 bp AACACACACATGATGGCTTCCGGTGTGCAGACGGGCTGGCCTAGGGATGCTGGTGCCCTGCACAATTTTTaGTCTCGGGAGAGGTTTTTC +
Preference number: 5 (lower is better)
Translates to: NTHMMASGVQTGWPRDAGALHNF*SRERFF
Trigger: GAAAAACCTCTCCCGAGACAAAAAATTGTGCAGGGC...ACCAGCATCCCTAGGCCAGCCCGTCTGCACACCGGAAGCCATCATGTGTGTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS CCA 90 bp CGAATAAAGCCACGTAGATCCAGTGACTATTTCCTCCCGAGTCCTTaGGACAGGGAGGAGGCTCCAAGATGGCTGTGGAGTTGCCATTCT +
Preference number: 5 (lower is better)
Translates to: RIKPRRSSDYFLPSP*DREEAPRWLWSCHS
Trigger: AGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTCCCTGTCCCAAGGACTCGGGAGGAAATAGTCACTGGATCTACGTGGCTTTATTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp AGGCTAGGGTGCTGCTCGGGGAGAGAGAACATGTCATATGCAGGGTCCCTCGCTTGTCATCTAAATAGGTaGGTCCCAGGGTGTAAATCG +
Preference number: 5 (lower is better)
Translates to: RLGCCSGRENMSYAGSLACHLNR*VPGCKS
Trigger: CGATTTACACCCTGGGACCAACCTATTTAGATGACA...AGCGAGGGACCCTGCATATGACATGTTCTCTCTCCCCGAGCAGCACCCTAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCCTGCTAGATCATGGCTAGCTTaGCAGATTCTCTTGCACCAA +
Preference number: 5 (lower is better)
Translates to: PRPSSLDSGRLQLSENPARSWLA*QILLHQ
Trigger: TTGGTGCAAGAGAATCTGCAAAGCTAGCCATGATCT...AGCAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
CDS-3UTR CAA 90 bp TCCAGCCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCAGATCATGGCTAGCTTaGCAGATTCTCTTGCACCAA +
Preference number: 5 (lower is better)
Translates to: SSLGPVLWTLADSSCLKTRSWLA*QILLHQ
Trigger: TTGGTGCAAGAGAATCTGCAAAGCTAGCCATGATCT...GGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
CDS-3UTR CAA 90 bp GTCCCGCCACACTGTGGTGATGTTCCTTGGTGCACACAGGGTTCTACAAAGCAGAAGGGAATGAGGGTATaGCAGGTGCGTTTGCACTTC +
Preference number: 5 (lower is better)
Translates to: VPPHCGDVPWCTQGSTKQKGMRV*QVRLHF
Trigger: GAAGTGCAAACGCACCTGCAATACCCTCATTCCCTT...CTGCTTTGTAGAACCCTGTGTGCACCAAGGAACATCACCACAGTGTGGCGGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp ACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTCAACCCAAGGCCAGTTaGCCATCTGCATTCCCAGCA +
Preference number: 5 (lower is better)
Translates to: TLLGSTLLVYFLQHMSGPQPKAS*PSAFPA
Trigger: TGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTTG...AGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp AATCCCTTTTGCAGAGCAGTTTCTTCATGGACTTCCCCCTGGGTGCTGAAGGCTGATACTGACACAGTTTaGCTGGGGTCCATCCTGTGG +
Preference number: 5 (lower is better)
Translates to: NPFCRAVSSWTSPWVLKADTDTV*LGSILW
Trigger: CCACAGGATGGACCCCAGCAAAACTGTGTCAGTATC...AGCCTTCAGCACCCAGGGGGAAGTCCATGAAGAAACTGCTCTGCAAAAGGGATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR CAA 90 bp GGGTCCCATCACCTGTCTCATGATGCTGGCCTCACAATAGAAGAACAACGTAGGGATACTGACACAGTTTaGCTGGGGTCCATCCTGTGG +
Preference number: 5 (lower is better)
Translates to: GSHHLSHDAGLTIEEQRRDTDTV*LGSILW
Trigger: CCACAGGATGGACCCCAGCAAAACTGTGTCAGTATC...CCTACGTTGTTCTTCTATTGTGAGGCCAGCATCATGAGACAGGTGATGGGACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp CCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCCTGCTAGGTACAAGGATGCATaGTCTTTCTTGACGTTGTCA +
Preference number: 5 (lower is better)
Translates to: PRPSSLDSGRLQLSENPARYKDA*SFLTLS
Trigger: TGACAACGTCAAGAAAGACAATGCATCCTTGTACCT...AGCAGGGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS TCA 90 bp GTAGAGACACCTTCTCTCCTGGAGTGTGGCCAAAGTGGAAGATACTaGCACAGTTTTGCTGGGGTCCATCCTGTGGTTACAGTCCATGAG +
Preference number: 5 (lower is better)
Translates to: VETPSLLECGQSGRY*HSFAGVHPVVTVHE
Trigger: CTCATGGACTGTAACCACAGGATGGACCCCAGCAAAACTGTGTCAGTATCTTCCACTTTGGCCACACTCCAGGAGAGAAGGTGTCTCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCTCCGGGCTTCAGCACAACCCAAGGCCAGTTaGCCATCTGCATTCCCAGCA +
Preference number: 5 (lower is better)
Translates to: RIQLNQQNPSVCLLRASAQPKAS*PSAFPA
Trigger: TGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTTG...TGCTGAAGCCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp TCCAGCCTCGGCCCAGTTCTCTGGACTCTGGCAGACTCCAGCTGTCTGAAAACCGTGTTTGATTTCTCCTaGATGATGTCATCGTCGATA +
Preference number: 5 (lower is better)
Translates to: SSLGPVLWTLADSSCLKTVFDFS*MMSSSI
Trigger: TATCGACGATGACATCATCAAGGAGAAATCAAACAC...GGTTTTCAGACAGCTGGAGTCTGCCAGAGTCCAGAGAACTGGGCCGAGGCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp AGTCCGGGAGTACTTCTCAGCTTTGCTGGGCTGGCCCACTTGCTCACTCACAGTTGTGACTCGATGAACTaGGGGATGAAGGTAATGAAA +
Preference number: 5 (lower is better)
Translates to: SPGVLLSFAGLAHLLTHSCDSMN*GMKVMK
Trigger: TTTCATTACCTTCATCCCCAAGTTCATCGAGTCACA...ACTGTGAGTGAGCAAGTGGGCCAGCCCAGCAAAGCTGAGAAGTACTCCCGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR CAA 90 bp GGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTCCAGCCAGACATGGGTaGAAGTATGTGATCCCATCT +
Preference number: 5 (lower is better)
Translates to: GKAVSLVEVSSPHQQWLCPARHG*KYVIPS
Trigger: AGATGGGATCACATACTTCAACCCATGTCTGGCTGG...ACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp GCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTATACTGCCGTCCTCTTTGTACTaGATAGAGTACCAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: AVSLVEVSSPHQQWLCILPSSLY*IEYQAR
Trigger: CCTGGCCTGGTACTCTATCAAGTACAAAGAGGACGG...CAGTATACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS TCA 90 bp TCTGGTCAAGGTGAACAGGATTTCTGGGATCCACATAAAAGCCAATaGGTAGCCCACCTAGTAAGTATCCTACTGCAGGGCCGAGTGCTC +
Preference number: 5 (lower is better)
Translates to: SGQGEQDFWDPHKSQ*VAHLVSILLQGRVL
Trigger: GAGCACTCGGCCCTGCAGTAGGATACTTACTAGGTGGGCTACTCATTGGCTTTTATGTGGATCCCAGAAATCCTGTTCACCTTGACCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp GTCCCGCCACACTGTGGTGATGTTCCTTGGTGCACACAGGGTTCTACAAAGCAGTGTGACTCGATGAACTaGGGGATGAAGGTAATGAAA +
Preference number: 5 (lower is better)
Translates to: VPPHCGDVPWCTQGSTKQCDSMN*GMKVMK
Trigger: TTTCATTACCTTCATCCCCAAGTTCATCGAGTCACA...CTGCTTTGTAGAACCCTGTGTGCACCAAGGAACATCACCACAGTGTGGCGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp ATAGCCTTTCCCATGGCTAACCATGGACCTCAGGCTTCTACCAAACGGGAGCAGAGGTACAAGGATGCATaGTCTTTCTTGACGTTGTCA +
Preference number: 5 (lower is better)
Translates to: IAFPMANHGPQASTKREQRYKDA*SFLTLS
Trigger: TGACAACGTCAAGAAAGACAATGCATCCTTGTACCT...CTGCTCCCGTTTGGTAGAAGCCTGAGGTCCATGGTTAGCCATGGGAAAGGCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp GTCCCGCCACACTGTGGTGATGTTCCTTGGTGCACACAGGGTTCTACAAAGCAGGTGTTTGATTTCTCCTaGATGATGTCATCGTCGATA +
Preference number: 5 (lower is better)
Translates to: VPPHCGDVPWCTQGSTKQVFDFS*MMSSSI
Trigger: TATCGACGATGACATCATCAAGGAGAAATCAAACAC...CTGCTTTGTAGAACCCTGTGTGCACCAAGGAACATCACCACAGTGTGGCGGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CCATGGACCTCAGGCTTCTACCAAACGGGAGCAGGAACATTAAGTGAACCTAGCAGATCATGGCTAGCTTaGCAGATTCTCTTGCACCAA +
Preference number: 5 (lower is better)
Translates to: PWTSGFYQTGAGTLSEPSRSWLA*QILLHQ
Trigger: TTGGTGCAAGAGAATCTGCAAAGCTAGCCATGATCT...GCTAGGTTCACTTAATGTTCCTGCTCCCGTTTGGTAGAAGCCTGAGGTCCATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp GATGATGTCTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTGGGCGGGGTGATCACTaGTCGGCTTTGGACACAGGT +
Preference number: 5 (lower is better)
Translates to: DDVCGGLQKERRHRCFSTGRGDH*SALDTG
Trigger: ACCTGTGTCCAAAGCCGACAAGTGATCACCCCGCCC...AGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAGACATCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATGAGTACTTCTCAGCTTaGCTGGGCTGGCCCACTTGC +
Preference number: 5 (lower is better)
Translates to: LWRFTKRKKAQVFLNLPYEYFSA*LGWPTC
Trigger: GCAAGTGGGCCAGCCCAGCAAAGCTGAGAAGTACTC...ATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp ACTGCTTCTGAGAAAGGTCCCGGATATGTCTGTGTGGTGCATGGGAATCCCTTTTGTCATCTAAATAGGTaGGTCCCAGGGTGTAAATCG +
Preference number: 5 (lower is better)
Translates to: TASEKGPGYVCVVHGNPFCHLNR*VPGCKS
Trigger: CGATTTACACCCTGGGACCAACCTATTTAGATGACA...AAAGGGATTCCCATGCACCACACAGACATATCCGGGACCTTTCTCAGAAGCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8
CDS-3UTR CAA 90 bp GGTCAAGCTCACCTTTATCTGGAGTGTATGCTAATGATATGTGTGGTCATAGCCGTATTGCAGGTGCGTTaGCACTTCCCAGACACAGCA +
Preference number: 5 (lower is better)
Translates to: GQAHLYLECMLMICVVIAVLQVR*HFPDTA
Trigger: TGCTGTGTCTGGGAAGTGCAAACGCACCTGCAATAC...GGCTATGACCACACATATCATTAGCATACACTCCAGATAAAGGTGAGCTTGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp ATGCTAATGATATGTGTGGTCATAGCCTTTCCCATGGCTAACCATGGACCTCAGAAGGGAATGAGGGTATaGCAGGTGCGTTTGCACTTC +
Preference number: 5 (lower is better)
Translates to: MLMICVVIAFPMANHGPQKGMRV*QVRLHF
Trigger: GAAGTGCAAACGCACCTGCAATACCCTCATTCCCTT...CTGAGGTCCATGGTTAGCCATGGGAAAGGCTATGACCACACATATCATTAGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CAACTTGCCGTATTCAACTCAACCAACAAAATCCATCTGTCTGCCTTCTCCGGGGCATGGGAATCCCTTTaGCAGAGCAGTTTCTTCATG +
Preference number: 5 (lower is better)
Translates to: QLAVFNSTNKIHLSAFSGAWESL*QSSFFM
Trigger: CATGAAGAAACTGCTCTGCAAAAGGGATTCCCATGC...CCCGGAGAAGGCAGACAGATGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS TCA 90 bp GGGCCTTTCCTCATCTTCCACAGACCTGAGAGTCACTATAATGGCTaGTGGTTGGGCACATGCTGTGATGAAGGTAACTATGAAAAGGAA +
Preference number: 5 (lower is better)
Translates to: GPFLIFHRPESHYNG*WLGTCCDEGNYEKE
Trigger: TTCCTTTTCATAGTTACCTTCATCACAGCATGTGCCCAACCATCAGCCATTATAGTGACTCTCAGGTCTGTGGAAGATGAGGAAAGGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS CCA 90 bp TCCTCATCTTCCACAGACCTGAGAGTCACTATAATGGCTGATGGTTaGGCACATGCTGTGATGAAGGTAACTATGAAAAGGAAGACCAGG +
Preference number: 5 (lower is better)
Translates to: SSSSTDLRVTIMADG*AHAVMKVTMKRKTR
Trigger: CCTGGTCTTCCTTTTCATAGTTACCTTCATCACAGCATGTGCCCAACCATCAGCCATTATAGTGACTCTCAGGTCTGTGGAAGATGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp AAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAACAACCCAAGGCCAGTTaGCCATCTGCATTCCCAGCA +
Preference number: 5 (lower is better)
Translates to: KKEGTGVSQLAVFNSTNKQPKAS*PSAFPA
Trigger: TGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTTG...TTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CCATCTGATCCACAGACTGGCTCATATTCGTGTATTTTACAGCCACAATTAACACAACCCAAGGCCAGTTaGCCATCTGCATTCCCAGCA +
Preference number: 5 (lower is better)
Translates to: PSDPQTGSYSCILQPQLTQPKAS*PSAFPA
Trigger: TGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTTG...TGTTAATTGTGGCTGTAAAATACACGAATATGAGCCAGTCTGTGGATCAGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp TGCATAGTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCGATACTGACACAGTTTaGCTGGGGTCCATCCTGTGG +
Preference number: 5 (lower is better)
Translates to: CIVEANSIVLCWRTHSRCDTDTV*LGSILW
Trigger: CCACAGGATGGACCCCAGCAAAACTGTGTCAGTATC...GCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp AAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCTGTCATCTAAATAGGTaGGTCCCAGGGTGTAAATCG +
Preference number: 5 (lower is better)
Translates to: KPCWAPHCLSIFSNICLACHLNR*VPGCKS
Trigger: CGATTTACACCCTGGGACCAACCTATTTAGATGACA...GGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp GCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTATACTGAGGTACAAGGATGCATaGTCTTTCTTGACGTTGTCA +
Preference number: 5 (lower is better)
Translates to: AVSLVEVSSPHQQWLCILRYKDA*SFLTLS
Trigger: TGACAACGTCAAGAAAGACAATGCATCCTTGTACCT...CAGTATACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp GGAAAGGCTGTCAGTCTTGTTGAGGTATCCAGCCCTCATCAACAGTGGCTGTGTGTGTTTGATTTCTCCTaGATGATGTCATCGTCGATA +
Preference number: 5 (lower is better)
Translates to: GKAVSLVEVSSPHQQWLCVFDFS*MMSSSI
Trigger: TATCGACGATGACATCATCAAGGAGAAATCAAACAC...ACACAGCCACTGTTGATGAGGGCTGGATACCTCAACAAGACTGACAGCCTTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp GTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCGTATTGCAGGTGCGTTaGCACTTCCCAGACACAGCA +
Preference number: 5 (lower is better)
Translates to: VEVYKKKEGTGVSQLAVFVLQVR*HFPDTA
Trigger: TGCTGTGTCTGGGAAGTGCAAACGCACCTGCAATAC...GAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp TTCTGGTTTCTATCACTACATAGAATCCTCAGCATGTACCTCTGCAGCAAGTTACGAAATGACGTCACGTaGTACTCCCAGCAAGAGCCC +
Preference number: 5 (lower is better)
Translates to: FWFLSLHRILSMYLCSKLRNDVT*YSQQEP
Trigger: GGGCTCTTGCTGGGAGTACAACGTGACGTCATTTCG...TAACTTGCTGCAGAGGTACATGCTGAGGATTCTATGTAGTGATAGAAACCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp AGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAATCCACCGTCCTCTTTGTACTaGATAGAGTACCAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: RRHRCFSTCRIQLNQQNPPSSLY*IEYQAR
Trigger: CCTGGCCTGGTACTCTATCAAGTACAAAGAGGACGG...TGGATTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp GCAAGACACAAAGGTCAGGAACTCTTCTTGATGTTACTTGATGTTACCAAACAACAACCCAAGGCCAGTTaGCCATCTGCATTCCCAGCA +
Preference number: 5 (lower is better)
Translates to: ARHKGQELFLMLLDVTKQQPKAS*PSAFPA
Trigger: TGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTTG...TTGTTTGGTAACATCAAGTAACATCAAGAAGAGTTCCTGACCTTTGTGTCTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp GAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAAATCTAGATACTGACACAGTTTaGCTGGGGTCCATCCTGTGG +
Preference number: 5 (lower is better)
Translates to: EANSIVLCWRTHSRCSNLDTDTV*LGSILW
Trigger: CCACAGGATGGACCCCAGCAAAACTGTGTCAGTATC...TAGATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CCATCTGATCCACAGACTGGCTCATATTCGTGTATTTTACAGCCACAATTAACAGATACTGACACAGTTTaGCTGGGGTCCATCCTGTGG +
Preference number: 5 (lower is better)
Translates to: PSDPQTGSYSCILQPQLTDTDTV*LGSILW
Trigger: CCACAGGATGGACCCCAGCAAAACTGTGTCAGTATC...TGTTAATTGTGGCTGTAAAATACACGAATATGAGCCAGTCTGTGGATCAGATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp ACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCCTGTGTTTGATTTCTCCTaGATGATGTCATCGTCGATA +
Preference number: 5 (lower is better)
Translates to: TLLGSTLLVYFLQHMSGPVFDFS*MMSSSI
Trigger: TATCGACGATGACATCATCAAGGAGAAATCAAACAC...AGGGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp AAACCCTGCTGGGCTCCACATTGCTTGTCTATTTTCTCCAACATATGTCTGGCCGCTTTGCAGATTCTCTaGCACCAAGCTTCAGTTTTT +
Preference number: 5 (lower is better)
Translates to: KPCWAPHCLSIFSNICLAALQIL*HQASVF
Trigger: AAAAACTGAAGCTTGGTGCAAGAGAATCTGCAAAGC...GGCCAGACATATGTTGGAGAAAATAGACAAGCAATGTGGAGCCCAGCAGGGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
CDS-3UTR CAA 90 bp CTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATCCAGCCAGACATGGGTaGAAGTATGTGATCCCATCT +
Preference number: 5 (lower is better)
Translates to: LWRFTKRKKAQVFLNLPYPARHG*KYVIPS
Trigger: AGATGGGATCACATACTTCAACCCATGTCTGGCTGG...ATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp TCAATCTTAGTACCAAAACAGGTCCAAGTCCACCAGAAATCTCTTCATATAATAGGGCGGGGTGATCACTaGTCGGCTTTGGACACAGGT +
Preference number: 5 (lower is better)
Translates to: SILVPKQVQVHQKSLHIIGRGDH*SALDTG
Trigger: ACCTGTGTCCAAAGCCGACAAGTGATCACCCCGCCC...TATTATATGAAGAGATTTCTGGTGGACTTGGACCTGTTTTGGTACTAAGATTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp AAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAGTATTGCAGGTGCGTTaGCACTTCCCAGACACAGCA +
Preference number: 5 (lower is better)
Translates to: KKEGTGVSQLAVFNSTNKVLQVR*HFPDTA
Trigger: TGCTGTGTCTGGGAAGTGCAAACGCACCTGCAATAC...TTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CCAAAGGGACATGCCACACTTTTCTATTTCCAATCAAATTGCATAGTTGAAGCACGAAATGACGTCACGTaGTACTCCCAGCAAGAGCCC +
Preference number: 5 (lower is better)
Translates to: PKGHATLFYFQSNCIVEARNDVT*YSQQEP
Trigger: GGGCTCTTGCTGGGAGTACAACGTGACGTCATTTCG...TGCTTCAACTATGCAATTTGATTGGAAATAGAAAAGTGTGGCATGTCCCTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp AAGAACAACGTAGGGCGTCTACTCACCCCAGTGGTAAGATTACCACTGTTAATGAGGTACAAGGATGCATaGTCTTTCTTGACGTTGTCA +
Preference number: 5 (lower is better)
Translates to: KNNVGRLLTPVVRLPLLMRYKDA*SFLTLS
Trigger: TGACAACGTCAAGAAAGACAATGCATCCTTGTACCT...CATTAACAGTGGTAATCTTACCACTGGGGTGAGTAGACGCCCTACGTTGTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp AGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACCAACAAAACCAGCCAGACATGGGTaGAAGTATGTGATCCCATCT +
Preference number: 5 (lower is better)
Translates to: RKKAQVFLNLPYSTQPTKPARHG*KYVIPS
Trigger: AGATGGGATCACATACTTCAACCCATGTCTGGCTGG...TTTTGTTGGTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp TCAATCTTAGTACCAAAACAGGTCCAAGTCCACCAGAAATCTCTTCATATAATAGAGTACTTCTCAGCTTaGCTGGGCTGGCCCACTTGC +
Preference number: 5 (lower is better)
Translates to: SILVPKQVQVHQKSLHIIEYFSA*LGWPTC
Trigger: GCAAGTGGGCCAGCCCAGCAAAGCTGAGAAGTACTC...TATTATATGAAGAGATTTCTGGTGGACTTGGACCTGTTTTGGTACTAAGATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATAGATCATGGCTAGCTTaGCAGATTCTCTTGCACCAA +
Preference number: 5 (lower is better)
Translates to: LWRFTKRKKAQVFLNLPYRSWLA*QILLHQ
Trigger: TTGGTGCAAGAGAATCTGCAAAGCTAGCCATGATCT...ATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp GCAAGACACAAAGGTCAGGAACTCTTCTTGATGTTACTTGATGTTACCAAACAACCAGCCAGACATGGGTaGAAGTATGTGATCCCATCT +
Preference number: 5 (lower is better)
Translates to: ARHKGQELFLMLLDVTKQPARHG*KYVIPS
Trigger: AGATGGGATCACATACTTCAACCCATGTCTGGCTGG...TTGTTTGGTAACATCAAGTAACATCAAGAAGAGTTCCTGACCTTTGTGTCTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136197.8
CDS-3UTR CAA 90 bp TGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTGCATGGGAATCCCTTTaGCAGAGCAGTTTCTTCATG +
Preference number: 5 (lower is better)
Translates to: CGGLQKERRHRCFSTCRIAWESL*QSSFFM
Trigger: CATGAAGAAACTGCTCTGCAAAAGGGATTCCCATGC...AATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CCTGAAAACAGAATCCAGCTTGATTTTTATGTGTGCTCACCAGAGTGCCTAACATGTGACTCGATGAACTaGGGGATGAAGGTAATGAAA +
Preference number: 5 (lower is better)
Translates to: PENRIQLDFYVCSPECLTCDSMN*GMKVMK
Trigger: TTTCATTACCTTCATCCCCAAGTTCATCGAGTCACA...TGTTAGGCACTCTGGTGAGCACACATAAAAATCAAGCTGGATTCTGTTTTCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000136197.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp TGCATAGTTGAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTGTGACTCGATGAACTaGGGGATGAAGGTAATGAAA +
Preference number: 5 (lower is better)
Translates to: CIVEANSIVLCWRTHSRCCDSMN*GMKVMK
Trigger: TTTCATTACCTTCATCCCCAAGTTCATCGAGTCACA...GCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTCAACTATGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp TTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTCAACTCAACTGTCATCTAAATAGGTaGGTCCCAGGGTGTAAATCG +
Preference number: 5 (lower is better)
Translates to: LQKERRHRCFSTCRIQLNCHLNR*VPGCKS
Trigger: CGATTTACACCCTGGGACCAACCTATTTAGATGACA...GTTGAGTTGAATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CTTTTCTCAGTGGCAACAGTGATAACCTTGACCTTCAGATTCATTAAAAAGACCTGTCATCTAAATAGGTaGGTCCCAGGGTGTAAATCG +
Preference number: 5 (lower is better)
Translates to: LFSVATVITLTFRFIKKTCHLNR*VPGCKS
Trigger: CGATTTACACCCTGGGACCAACCTATTTAGATGACA...GGTCTTTTTAATGAATCTGAAGGTCAAGGTTATCACTGTTGCCACTGAGAAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp GATGATGTCTGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTAGGTACAAGGATGCATaGTCTTTCTTGACGTTGTCA +
Preference number: 5 (lower is better)
Translates to: DDVCGGLQKERRHRCFSTRYKDA*SFLTLS
Trigger: TGACAACGTCAAGAAAGACAATGCATCCTTGTACCT...AGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACAGACATCATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp GAAGCAAATTCAATTGTGCTTTGCTGGAGAACTCACAGTAGGTGCTCAAATCTAGCTTTGCAGATTCTCTaGCACCAAGCTTCAGTTTTT +
Preference number: 5 (lower is better)
Translates to: EANSIVLCWRTHSRCSNLALQIL*HQASVF
Trigger: AAAAACTGAAGCTTGGTGCAAGAGAATCTGCAAAGC...TAGATTTGAGCACCTACTGTGAGTTCTCCAGCAAAGCACAATTGAATTTGCTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp CCAAAGGGACATGCCACACTTTTCTATTTCCAATCAAATTGCATAGTTGAAGCAAGATCATGGCTAGCTTaGCAGATTCTCTTGCACCAA +
Preference number: 5 (lower is better)
Translates to: PKGHATLFYFQSNCIVEARSWLA*QILLHQ
Trigger: TTGGTGCAAGAGAATCTGCAAAGCTAGCCATGATCT...TGCTTCAACTATGCAATTTGATTGGAAATAGAAAAGTGTGGCATGTCCCTTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp GTCTATTTTCTCCAACATATGTCTGGCCCTACTAATGTAGAACATGCTGTTAGAAGGTACAAGGATGCATaGTCTTTCTTGACGTTGTCA +
Preference number: 5 (lower is better)
Translates to: VYFLQHMSGPTNVEHAVRRYKDA*SFLTLS
Trigger: TGACAACGTCAAGAAAGACAATGCATCCTTGTACCT...TCTAACAGCATGTTCTACATTAGTAGGGCCAGACATATGTTGGAGAAAATAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp TGTGGAGGTTTACAAAAAGAAAGAAGGCACAGGTGTTTCTCAACTTGCCGTATTGTGTTTGATTTCTCCTaGATGATGTCATCGTCGATA +
Preference number: 5 (lower is better)
Translates to: CGGLQKERRHRCFSTCRIVFDFS*MMSSSI
Trigger: TATCGACGATGACATCATCAAGGAGAAATCAAACAC...AATACGGCAAGTTGAGAAACACCTGTGCCTTCTTTCTTTTTGTAAACCTCCACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp AACAGAAGACCTCTTCTATATGTACAGTTGAATGGTACTGCCTATGAAATAGCCGCTTTGCAGATTCTCTaGCACCAAGCTTCAGTTTTT +
Preference number: 5 (lower is better)
Translates to: NRRPLLYVQLNGTAYEIAALQIL*HQASVF
Trigger: AAAAACTGAAGCTTGGTGCAAGAGAATCTGCAAAGC...GGCTATTTCATAGGCAGTACCATTCAACTGTACATATAGAAGAGGTCTTCTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS-3UTR CAA 90 bp ATGTTACTTTTTACTAAATGGAAATCAACTGAACTAGTTCTCATGGTGCCTGCTTGTCATCTAAATAGGTaGGTCCCAGGGTGTAAATCG +
Preference number: 5 (lower is better)
Translates to: MLLFTKWKSTELVLMVPACHLNR*VPGCKS
Trigger: CGATTTACACCCTGGGACCAACCTATTTAGATGACA...AGCAGGCACCATGAGAACTAGTTCAGTTGATTTCCATTTAGTAAAAAGTAACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp TCATATTCGTGTATTTTACAGCCACAATTAACATTACAGCTTCCTGTCAGATTCTGTGACTCGATGAACTaGGGGATGAAGGTAATGAAA +
Preference number: 5 (lower is better)
Translates to: SYSCILQPQLTLQLPVRFCDSMN*GMKVMK
Trigger: TTTCATTACCTTCATCCCCAAGTTCATCGAGTCACA...GAATCTGACAGGAAGCTGTAATGTTAATTGTGGCTGTAAAATACACGAATATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147606.3
CDS-3UTR CAA 90 bp TCAATCTTAGTACCAAAACAGGTCCAAGTCCACCAGAAATCTCTTCATATAATAGCTTTGCAGATTCTCTaGCACCAAGCTTCAGTTTTT +
Preference number: 5 (lower is better)
Translates to: SILVPKQVQVHQKSLHIIALQIL*HQASVF
Trigger: AAAAACTGAAGCTTGGTGCAAGAGAATCTGCAAAGC...TATTATATGAAGAGATTTCTGGTGGACTTGGACCTGTTTTGGTACTAAGATTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS GCA 72 bp TCTTGGACAGCTCCAACCGAAGACGGTGCCTCTAGCTaGTGTTGGGCCCGAGACTGCGCATCCCCTTCGTCC +
Preference number: 6 (lower is better)
Translates to: SWTAPTEDGASS*CWARDCASPSS
Trigger: GGACGAAGGGGATGCGCAGTCTCGGGCCCAACAGCAGCTAGAGGCACCGTCTTCGGTTGGAGCTGTCCAAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS CAA 90 bp CACTCGGAGCTGGCTGCGCTGCCCCACTGTGGGCGGGGTGATCACTaGTCGGCTTTGGACACAGGTACACTCTGTGTAATTTCGGACCCC +
Preference number: 6 (lower is better)
Translates to: HSELAALPHCGRGDH*SALDTGTLCVISDP
Trigger: GGGGTCCGAAATTACACAGAGTGTACCTGTGTCCAAAGCCGACAAGTGATCACCCCGCCCACAGTGGGGCAGCGCAGCCAGCTCCGAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS TCA 72 bp AACCCAAGGCCAGTTTGCCATCTGCATTCCCAGCACTaGAATTCTGCCGGCAGGAGGCGCTGTGCAGGACCG +
Preference number: 6 (lower is better)
Translates to: NPRPVCHLHSQH*NSAGRRRCAGP
Trigger: CGGTCCTGCACAGCGCCTCCTGCCGGCAGAATTTCAGTGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS GCA 72 bp GCCAGTTTGCCATCTGCATTCCCAGCACTGAAATTCTaGCGGCAGGAGGCGCTGTGCAGGACCGGTAAACTC +
Preference number: 6 (lower is better)
Translates to: ASLPSAFPALKF*RQEALCRTGKL
Trigger: GAGTTTACCGGTCCTGCACAGCGCCTCCTGCCGGCAGAATTTCAGTGCTGGGAATGCAGATGGCAAACTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS CCA 72 bp CTCCCGAGTCCTTGGGACAGGGAGGAGGCTCCAAGATaGCTGTGGAGTTGCCATTCTGACAAAGGCCATCGT +
Preference number: 6 (lower is better)
Translates to: LPSPWDREEAPR*LWSCHSDKGHR
Trigger: ACGATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTCCCTGTCCCAAGGACTCGGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS CAA 72 bp CTGCCCCACTGTGGGCGGGGTGATCACTTGTCGGCTTaGGACACAGGTACACTCTGTGTAATTTCGGACCCC +
Preference number: 6 (lower is better)
Translates to: LPHCGRGDHLSA*DTGTLCVISDP
Trigger: GGGGTCCGAAATTACACAGAGTGTACCTGTGTCCAAAGCCGACAAGTGATCACCCCGCCCACAGTGGGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS TCA 72 bp GCCATAGGGGCCTTCGCCCACGGCCACCAAAGTAGCTaGCGAACACCACCACCACCAGGTTTCCTATATCAA +
Preference number: 6 (lower is better)
Translates to: AIGAFAHGHQSS*RTPPPPGFLYQ
Trigger: TTGATATAGGAAACCTGGTGGTGGTGGTGTTCGTCAGCTACTTTGGTGGCCGTGGGCGAAGGCCCCTATGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS TCA 72 bp GGAGGAGGCTCCAAGATGGCTGTGGAGTTGCCATTCTaGCAAAGGCCATCGTTGGAGGCCGAAGCGTTCAAC +
Preference number: 6 (lower is better)
Translates to: GGGSKMAVELPF*QRPSLEAEAFN
Trigger: GTTGAACGCTTCGGCCTCCAACGATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS GCA 72 bp GTCCTAGATGCGTCTCCTGGCGACCTGGAGCTTCATTaGAACCCAAGGCCAGTTTGCCATCTGCATTCCCAG +
Preference number: 6 (lower is better)
Translates to: VLDASPGDLELH*NPRPVCHLHSQ
Trigger: CTGGGAATGCAGATGGCAAACTGGCCTTGGGTTGCAATGAAGCTCCAGGTCGCCAGGAGACGCATCTAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS GCA 72 bp TACTCCCAGCAAGAGCCCTGCACTCCGCATTCCTGCTaGCAGAGCATACAGGTGGTGTCAATCACAGCTCCA +
Preference number: 6 (lower is better)
Translates to: YSQQEPCTPHSC*QSIQVVSITAP
Trigger: TGGAGCTGTGATTGACACCACCTGTATGCTCTGGCAGCAGGAATGCGGAGTGCAGGGCTCTTGCTGGGAGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS CCA 72 bp GTCCATGAGTTCCGTTGTAGTGCCTGCCGAAGTGGATaGAGCAGAAGGGCTGGGGACTATCAAGTTCCGTCC +
Preference number: 6 (lower is better)
Translates to: VHEFRCSACRSG*SRRAGDYQVPS
Trigger: GGACGGAACTTGATAGTCCCCAGCCCTTCTGCTCCATCCACTTCGGCAGGCACTACAACGGAACTCATGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS CCA 72 bp CCACGTAGATCCAGTGACTATTTCCTCCCGAGTCCTTaGGACAGGGAGGAGGCTCCAAGATGGCTGTGGAGT +
Preference number: 6 (lower is better)
Translates to: PRRSSDYFLPSP*DREEAPRWLWS
Trigger: ACTCCACAGCCATCTTGGAGCCTCCTCCCTGTCCCAAGGACTCGGGAGGAAATAGTCACTGGATCTACGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS GCA 72 bp TTCCCAGCACTGAAATTCTGCCGGCAGGAGGCGCTGTaGAGGACCGGTAAACTCTTAGACCTGAAGGACTCT +
Preference number: 6 (lower is better)
Translates to: FPALKFCRQEAL*RTGKLLDLKDS
Trigger: AGAGTCCTTCAGGTCTAAGAGTTTACCGGTCCTGCACAGCGCCTCCTGCCGGCAGAATTTCAGTGCTGGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS GCA 72 bp TGGAGCTTCATTGCAACCCAAGGCCAGTTTGCCATCTaGATTCCCAGCACTGAAATTCTGCCGGCAGGAGGC +
Preference number: 6 (lower is better)
Translates to: WSFIATQGQFAI*IPSTEILPAGG
Trigger: GCCTCCTGCCGGCAGAATTTCAGTGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTTGCAATGAAGCTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS GCA 72 bp CCTGTGGTTACAGTCCATGAGTTCCGTTGTAGTGCCTaGCGAAGTGGATGGAGCAGAAGGGCTGGGGACTAT +
Preference number: 6 (lower is better)
Translates to: PVVTVHEFRCSA*RSGWSRRAGDY
Trigger: ATAGTCCCCAGCCCTTCTGCTCCATCCACTTCGGCAGGCACTACAACGGAACTCATGGACTGTAACCACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS CAA 72 bp TGGCGACCTGGAGCTTCATTGCAACCCAAGGCCAGTTaGCCATCTGCATTCCCAGCACTGAAATTCTGCCGG +
Preference number: 6 (lower is better)
Translates to: WRPGASLQPKAS*PSAFPALKFCR
Trigger: CCGGCAGAATTTCAGTGCTGGGAATGCAGATGGCAAACTGGCCTTGGGTTGCAATGAAGCTCCAGGTCGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS TCA 72 bp ACCGGCACTGGGGACAATGATGACACCAGTTTCCGATaGAACGAGGGTCACTCTGGTCAAGGTGAACAGGAT +
Preference number: 6 (lower is better)
Translates to: TGTGDNDDTSFR*NEGHSGQGEQD
Trigger: ATCCTGTTCACCTTGACCAGAGTGACCCTCGTTTCATCGGAAACTGGTGTCATCATTGTCCCCAGTGCCGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146763.8
CDS CCA 72 bp TGGCTGTGGAGTTGCCATTCTGACAAAGGCCATCGTTaGAGGCCGAAGCGTTCAACTCTTGGATTTGATAGG +
Preference number: 6 (lower is better)
Translates to: WLWSCHSDKGHR*RPKRSTLGFDR
Trigger: CCTATCAAATCCAAGAGTTGAACGCTTCGGCCTCCAACGATGGCCTTTGTCAGAATGGCAACTCCACAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS CCA 72 bp TGGAGAAGCACAGCAGAGAAACCCCGCTGCAGATCATaGCTAGCTTTGCAGATTCTCTTGCACCAAGCTTCA +
Preference number: 6 (lower is better)
Translates to: WRSTAEKPRCRS*LALQILLHQAS
Trigger: TGAAGCTTGGTGCAAGAGAATCTGCAAAGCTAGCCATGATCTGCAGCGGGGTTTCTCTGCTGTGCTTCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000188454.7
CDS TCA 72 bp ACACCACCACCACCAGGTTTCCTATATCAAAGCAGCTaGCCAGCAGCCCTGACTCAGAACTCTTCAAGCTAT +
Preference number: 6 (lower is better)
Translates to: TPPPPGFLYQSS*PAALTQNSSSY
Trigger: ATAGCTTGAAGAGTTCTGAGTCAGGGCTGCTGGTCAGCTGCTTTGATATAGGAAACCTGGTGGTGGTGGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS CAA 90 bp ATGCTGGCATTGGAAGCTGGGATACCAAACTGTGACTCGATGAACTaGGGGATGAAGGTAATGAAAGCGGTGACAATGGCACTCTCAGCT +
Preference number: 6 (lower is better)
Translates to: MLALEAGIPNCDSMN*GMKVMKAVTMALSA
Trigger: AGCTGAGAGTGCCATTGTCACCGCTTTCATTACCTTCATCCCCAAGTTCATCGAGTCACAGTTTGGTATCCCAGCTTCCAATGCCAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS TCA 72 bp GGTGAACAGGATTTCTGGGATCCACATAAAAGCCAATaGGTAGCCCACCTAGTAAGTATCCTACTGCAGGGC +
Preference number: 6 (lower is better)
Translates to: GEQDFWDPHKSQ*VAHLVSILLQG
Trigger: GCCCTGCAGTAGGATACTTACTAGGTGGGCTACTCATTGGCTTTTATGTGGATCCCAGAAATCCTGTTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000146763.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS GCA 72 bp GTAGGAATGTATGCAAGTGTTCGCAACAAAACAAACTaGATTCCCAACGCGAAGGGCCTTTCCTCATCTTCC +
Preference number: 6 (lower is better)
Translates to: VGMYASVRNKTN*IPNAKGLSSSS
Trigger: GGAAGATGAGGAAAGGCCCTTCGCGTTGGGAATGCAGTTTGTTTTGTTGCGAACACTTGCATACATTCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS CAA 72 bp TTGGAAGCTGGGATACCAAACTGTGACTCGATGAACTaGGGGATGAAGGTAATGAAAGCGGTGACAATGGCA +
Preference number: 6 (lower is better)
Translates to: LEAGIPNCDSMN*GMKVMKAVTMA
Trigger: TGCCATTGTCACCGCTTTCATTACCTTCATCCCCAAGTTCATCGAGTCACAGTTTGGTATCCCAGCTTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000115402.8
ENSMUST00000115403.9
ENSMUST00000136197.8
ENSMUST00000147606.3
ENSMUST00000188454.7
CDS TCA 72 bp CTCATCTTCCACAGACCTGAGAGTCACTATAATGGCTaGTGGTTGGGCACATGCTGTGATGAAGGTAACTAT +
Preference number: 6 (lower is better)
Translates to: LIFHRPESHYNG*WLGTCCDEGNY
Trigger: ATAGTTACCTTCATCACAGCATGTGCCCAACCATCAGCCATTATAGTGACTCTCAGGTCTGTGGAAGATGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS CCA 72 bp TCCACAGACCTGAGAGTCACTATAATGGCTGATGGTTaGGCACATGCTGTGATGAAGGTAACTATGAAAAGG +
Preference number: 6 (lower is better)
Translates to: STDLRVTIMADG*AHAVMKVTMKR
Trigger: CCTTTTCATAGTTACCTTCATCACAGCATGTGCCCAACCATCAGCCATTATAGTGACTCTCAGGTCTGTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115403.9
ENSMUST00000188454.7
CDS CCA 72 bp GAATGTATGCTGAGAGTCACTATAATGGCTGATGGTTaGGCACATGCTGTGATGAAGGTAACTATGAAAAGG +
Preference number: 6 (lower is better)
Translates to: ECMLRVTIMADG*AHAVMKVTMKR
Trigger: CCTTTTCATAGTTACCTTCATCACAGCATGTGCCCAACCATCAGCCATTATAGTGACTCTCAGCATACATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115402.8