Pregenerated sensors for SLCO4C1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040693Ensembl transcript IDs: ENSMUST00000071985.6
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTAGGTCTAGCCCTCAGTTTCCTGAGACTGACCCCTCTAATCTTTaGATATTGAAGGAGCTTGTGAATCTAACTCCTAGCTCATCCCTC | + |
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Preference number: 1 (lower is better) Translates to: SRSSPQFPETDPSNL*ILKELVNLTPSSSL Trigger: GAGGGATGAGCTAGGAGTTAGATTCACAAGCTCCTTCAATATTCAAAGATTAGAGGGGTCAGTCTCAGGAAACTGAGGGCTAGACCTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR TCA 90 bp | TGTAACTCCAGGAGAATCAGATGTCACAGATCATCTTTAGCTACCTaGGTTCCTGAGCTATTGGGGTATGTGAGGCCCTGTCTTAAAGAA | + |
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Preference number: 1 (lower is better) Translates to: CNSRRIRCHRSSLAT*VPELLGYVRPCLKE Trigger: TTCTTTAAGACAGGGCCTCACATACCCCAATAGCTCAGGAACTCAGGTAGCTAAAGATGATCTGTGACATCTGATTCTCCTGGAGTTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR TCA 90 bp | GGTATCCTGTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTTaGTGGAAGTGTTGGCTTCCCAAATACCTGAATTTTGGCTATATT | + |
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Preference number: 1 (lower is better) Translates to: GILWLSLSFLCCSLA*WKCWLPKYLNFGYI Trigger: AATATAGCCAAAATTCAGGTATTTGGGAAGCCAACACTTCCATCAAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGGATACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR CAA 90 bp | AGCATGGGTTTCACACCGTGGTCTACACAACTAGACAATGGTGCCTaGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCAAAGCAA | + |
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Preference number: 2 (lower is better) Translates to: SMGFTPWSTQLDNGA*AQDVLTGRSQFPKQ Trigger: TTGCTTTGGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGTTGTGTAGACCACGGTGTGAAACCCATGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR-3UTR CCA 90 bp | ACTCATAAAGAGCTAACATGGATGGTACGGGGTGTGGGGTGGTTGGCTAGGGAACTCCGTTCTGGAGCATaGGTTTCACACCGTGGTCTA | + |
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Preference number: 2 (lower is better) Translates to: THKELTWMVRGVGWLARELRSGA*VSHRGL Trigger: TAGACCACGGTGTGAAACCCATGCTCCAGAACGGAG...TTCCCTAGCCAACCACCCCACACCCCGTACCATCCATGTTAGCTCTTTATGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR-3UTR TCA 90 bp | ACTCATAAAGAGCTAACATGGATGGTACGGGGTGTGGGGTGGTTGGCTAGGGAAAGCTATTGGGGTATGTaGGGCCCTGTCTTAAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: THKELTWMVRGVGWLARESYWGM*GPVLKK Trigger: TTTCTTTAAGACAGGGCCTCACATACCCCAATAGCT...TTCCCTAGCCAACCACCCCACACCCCGTACCATCCATGTTAGCTCTTTATGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR-3UTR TCA 90 bp | CCTAGCTCATCCCTCCTCCTTCTTGAATTTCAGCTTATAAGAGCTCCCAGGTGCTCATCTTTAGCTACCTaGGTTCCTGAGCTATTGGGG | + |
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Preference number: 2 (lower is better) Translates to: PSSSLLLLEFQLIRAPRCSSLAT*VPELLG Trigger: CCCCAATAGCTCAGGAACTCAGGTAGCTAAAGATGA...GCACCTGGGAGCTCTTATAAGCTGAAATTCAAGAAGGAGGAGGGATGAGCTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR-3UTR TCA 90 bp | ACTCATAAAGAGCTAACATGGATGGTACGGGGTGTGGGGTGGTTGGCTAGGGAATGTAACCTCAGTACATaGGCTGTAACTCCAGGAGAA | + |
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Preference number: 2 (lower is better) Translates to: THKELTWMVRGVGWLARECNLST*AVTPGE Trigger: TTCTCCTGGAGTTACAGCTCATGTACTGAGGTTACA...TTCCCTAGCCAACCACCCCACACCCCGTACCATCCATGTTAGCTCTTTATGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR-3UTR TCA 90 bp | ACTCATAAAGAGCTAACATGGATGGTACGGGGTGTGGGGTGGTTGGCTAGGGAAACCTACACTGTAAAGTaGGTTTTAAACAACTCGTCC | + |
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Preference number: 2 (lower is better) Translates to: THKELTWMVRGVGWLARETYTVK*VLNNSS Trigger: GGACGAGTTGTTTAAAACTCACTTTACAGTGTAGGT...TTCCCTAGCCAACCACCCCACACCCCGTACCATCCATGTTAGCTCTTTATGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR-3UTR TCA 90 bp | TCATCGGAGGTATCCTGTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTTGGCACTTTTTGTCATTaGAGCTGGTTCTTTTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: SSEVSCGFPCLSCAVPLLGTFCH*SWFFSL Trigger: CAGAGAAAAGAACCAGCTTCAATGACAAAAAGTGCC...AAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGGATACCTCCGATGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR-3UTR TCA 90 bp | ACTCATAAAGAGCTAACATGGATGGTACGGGGTGTGGGGTGGTTGGCTAGGGAAGTCAACAGTGCATTATaGCATCTTGTCATGTCTACT | + |
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Preference number: 2 (lower is better) Translates to: THKELTWMVRGVGWLAREVNSAL*HLVMST Trigger: AGTAGACATGACAAGATGTCATAATGCACTGTTGAC...TTCCCTAGCCAACCACCCCACACCCCGTACCATCCATGTTAGCTCTTTATGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR-3UTR TCA 90 bp | TCATCGGAGGTATCCTGTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTTGACCCCTCTAATCTTTaGATATTGAAGGAGCTTGTG | + |
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Preference number: 2 (lower is better) Translates to: SSEVSCGFPCLSCAVPLLDPSNL*ILKELV Trigger: CACAAGCTCCTTCAATATTCAAAGATTAGAGGGGTC...AAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGGATACCTCCGATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR-3UTR TCA 90 bp | CCTAGCTCATCCCTCCTCCTTCTTGAATTTCAGCTTATAAGAGCTCCCAGGTGCGAAAGAATTAAAATATaGCCGTGTGAGCCAATGGTG | + |
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Preference number: 2 (lower is better) Translates to: PSSSLLLLEFQLIRAPRCERIKI*PCEPMV Trigger: CACCATTGGCTCACACGGTCATATTTTAATTCTTTC...GCACCTGGGAGCTCTTATAAGCTGAAATTCAAGAAGGAGGAGGGATGAGCTAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR CAA 90 bp | AGGTATCCTGTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTaGATGGAAGTGTTGGCTTCCCAAATACCTGAATTTTGGCTATAT | + |
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Preference number: 2 (lower is better) Translates to: RYPVAFPVFLVLFPC*MEVLASQIPEFWLY Trigger: ATATAGCCAAAATTCAGGTATTTGGGAAGCCAACACTTCCATCAAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGGATACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR-3UTR CCA 90 bp | TCATCGGAGGTATCCTGTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTTATTCTTCTTACTCCTTaGTGTTTTCATAGGTTGACA | + |
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Preference number: 2 (lower is better) Translates to: SSEVSCGFPCLSCAVPLLILLTP*CFHRLT Trigger: TGTCAACCTATGAAAACACCAAGGAGTAAGAAGAAT...AAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGGATACCTCCGATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR CAA 90 bp | GGGACCATATACTCTTCTACCTGTGCAGACTTCTTATTTCCTTTCTaGTTCTTATTTCACGGTTCTATCGCTAAGCTTCTTAGGATTGCA | + |
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Preference number: 2 (lower is better) Translates to: GTIYSSTCADFLFPF*FLFHGSIAKLLRIA Trigger: TGCAATCCTAAGAAGCTTAGCGATAGAACCGTGAAATAAGAACAAGAAAGGAAATAAGAAGTCTGCACAGGTAGAAGAGTATATGGTCCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR CCA 72 bp | CATGGGTTTCACACCGTGGTCTACACAACTAGACAATaGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAG | + |
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Preference number: 3 (lower is better) Translates to: HGFHTVVYTTRQ*CLGTGCSHRQE Trigger: CTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGTTGTGTAGACCACGGTGTGAAACCCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR GCA 72 bp | CCTGTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTaGTTGATGGAAGTGTTGGCTTCCCAAATACCTGAA | + |
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Preference number: 3 (lower is better) Translates to: PVAFPVFLVLFP*LMEVLASQIPE Trigger: TTCAGGTATTTGGGAAGCCAACACTTCCATCAAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR CCA 72 bp | GAGAACCTGATTCATGAAACTCATAAAGAGCTAACATaGATGGTACGGGGTGTGGGGTGGTTGGCTAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: ENLIHETHKELT*MVRGVGWLARE Trigger: TTCCCTAGCCAACCACCCCACACCCCGTACCATCCATGTTAGCTCTTTATGAGTTTCATGAATCAGGTTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR TCA 72 bp | AGGAGAATCAGATGTCACAGATCATCTTTAGCTACCTaGGTTCCTGAGCTATTGGGGTATGTGAGGCCCTGT | + |
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Preference number: 3 (lower is better) Translates to: RRIRCHRSSLAT*VPELLGYVRPC Trigger: ACAGGGCCTCACATACCCCAATAGCTCAGGAACTCAGGTAGCTAAAGATGATCTGTGACATCTGATTCTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR CCA 72 bp | AAAGTGGGGAAGAATATTCTCATCGGAGGTATCCTGTaGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCT | + |
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Preference number: 3 (lower is better) Translates to: KVGKNILIGGIL*LSLSFLCCSLA Trigger: AGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGGATACCTCCGATGAGAATATTCTTCCCCACTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR TCA 72 bp | AGCCCTCAGTTTCCTGAGACTGACCCCTCTAATCTTTaGATATTGAAGGAGCTTGTGAATCTAACTCCTAGC | + |
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Preference number: 3 (lower is better) Translates to: SPQFPETDPSNL*ILKELVNLTPS Trigger: GCTAGGAGTTAGATTCACAAGCTCCTTCAATATTCAAAGATTAGAGGGGTCAGTCTCAGGAAACTGAGGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR TCA 72 bp | TGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTTaGTGGAAGTGTTGGCTTCCCAAATACCTGAATTTT | + |
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Preference number: 3 (lower is better) Translates to: WLSLSFLCCSLA*WKCWLPKYLNF Trigger: AAAATTCAGGTATTTGGGAAGCCAACACTTCCATCAAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR GCA 72 bp | TTACCCTTGATCACAATGGAGGCAGTATTTAAGATGTaGCCAGAAAGTGGGGAAGAATATTCTCATCGGAGG | + |
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Preference number: 3 (lower is better) Translates to: LPLITMEAVFKM*PESGEEYSHRR Trigger: CCTCCGATGAGAATATTCTTCCCCACTTTCTGGGCACATCTTAAATACTGCCTCCATTGTGATCAAGGGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR TCA 72 bp | ACATGGGATTGTAGAAAATCTGACTCCTATTACCCTTaGTCACAATGGAGGCAGTATTTAAGATGTGCCCAG | + |
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Preference number: 3 (lower is better) Translates to: TWDCRKSDSYYP*SQWRQYLRCAQ Trigger: CTGGGCACATCTTAAATACTGCCTCCATTGTGATCAAGGGTAATAGGAGTCAGATTTTCTACAATCCCATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CCA 90 bp | CCTAGCTCATCCCTCCTCCTTCTTGAATTTCAGCTTATAAGAGCTCCCAGGTGCAGCAGACGCACGGCGTaGGGTGCCTGGGCTGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: PSSSLLLLEFQLIRAPRCSRRTA*GAWAGR Trigger: CCTTCCAGCCCAGGCACCCCACGCCGTGCGTCTGCT...GCACCTGGGAGCTCTTATAAGCTGAAATTCAAGAAGGAGGAGGGATGAGCTAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR TCA 90 bp | CCTAGCTCATCCCTCCTCCTTCTTGAATTTCAGCTTATAAGAGCTCCCAGGTGCTGGAGACACTGGGGGTaGAAGCCCCTCCACCCGCAA | + |
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Preference number: 4 (lower is better) Translates to: PSSSLLLLEFQLIRAPRCWRHWG*KPLHPQ Trigger: TTGCGGGTGGAGGGGCTTTCACCCCCAGTGTCTCCA...GCACCTGGGAGCTCTTATAAGCTGAAATTCAAGAAGGAGGAGGGATGAGCTAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR TCA 90 bp | CCTAGCTCATCCCTCCTCCTTCTTGAATTTCAGCTTATAAGAGCTCCCAGGTGCTGCGAACCCCCATTCTaGTTCCTGGAGGCCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: PSSSLLLLEFQLIRAPRCCEPPF*FLEATA Trigger: TGCTGTGGCCTCCAGGAATCAGAATGGGGGTTCGCA...GCACCTGGGAGCTCTTATAAGCTGAAATTCAAGAAGGAGGAGGGATGAGCTAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR TCA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCACACCACCTAAGATTTaGCCAAGAGCAGCTCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPTPPKI*PRAAPG Trigger: TCCTGGAGCTGCTCTTGGTCAAATCTTAGGTGGTGT...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CCA 90 bp | ACTCATAAAGAGCTAACATGGATGGTACGGGGTGTGGGGTGGTTGGCTAGGGAACCCCATTCTGATTCCTaGAGGCCACAGCAGAGACCT | + |
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Preference number: 4 (lower is better) Translates to: THKELTWMVRGVGWLAREPHSDS*RPQQRP Trigger: AGGTCTCTGCTGTGGCCTCCAGGAATCAGAATGGGG...TTCCCTAGCCAACCACCCCACACCCCGTACCATCCATGTTAGCTCTTTATGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CCA 90 bp | ACTCATAAAGAGCTAACATGGATGGTACGGGGTGTGGGGTGGTTGGCTAGGGAACAGCCCCTCCAAGAGTaGCTGCAAAGCTCGATGTCA | + |
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Preference number: 4 (lower is better) Translates to: THKELTWMVRGVGWLAREQPLQE*LQSSMS Trigger: TGACATCGAGCTTTGCAGCCACTCTTGGAGGGGCTG...TTCCCTAGCCAACCACCCCACACCCCGTACCATCCATGTTAGCTCTTTATGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR CAA 72 bp | TTCACACCGTGGTCTACACAACTAGACAATGGTGCCTaGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: FTPWSTQLDNGA*AQDVLTGRSQF Trigger: GAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGTTGTGTAGACCACGGTGTGAA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR GCA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCAGGACCGCAAACAGTTaGAGTTGGCATTACAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPRTANS*SWHYKV Trigger: CACCTTGTAATGCCAACTGCAACTGTTTGCGGTCCT...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR GCA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCCGAAGAAGCATGAACTaGACTCCCAATGCTAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPRRSMN*TPNARD Trigger: GTCTCTAGCATTGGGAGTGCAGTTCATGCTTCTTCG...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CCA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCCCAACACATATCCAATaGCAGGGCCTAGGATTGACA | + |
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Preference number: 4 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPPTHIQ*QGLGLT Trigger: TGTCAATCCTAGGCCCTGCCATTGGATATGTGTTGG...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR TCA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCGAAGTTTTGCCAGCTTaGATTTTTGCTGTCCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPEVLPA*IFAVPG Trigger: ACCAGGGACAGCAAAAATTCAAGCTGGCAAAACTTC...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CCA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCGCAAACAGTTGCAGTTaGCATTACAAGGTGCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPANSCS*HYKVQS Trigger: TGACTGCACCTTGTAATGCCAACTGCAACTGTTTGC...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR TCA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCGTTCATATCTTCCACTaGAGAAGTGTGGTAAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPVHIFH*RSVVRK Trigger: TTTCCTTACCACACTTCTTCAGTGGAAGATATGAAC...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR TCA 90 bp | TCATCGGAGGTATCCTGTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTTATTCTGACTTTGAAATaGTACCTCTGTTCCTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: SSEVSCGFPCLSCAVPLLILTLK*YLCSWG Trigger: CCCCCAGGAACAGAGGTATCATTTCAAAGTCAGAAT...AAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGGATACCTCCGATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR GCA 90 bp | TCATCGGAGGTATCCTGTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTTGAGTCTGGGAAGTTTTaGCAGCTTGAATTTTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: SSEVSCGFPCLSCAVPLLESGKF*QLEFLL Trigger: CAGCAAAAATTCAAGCTGGCAAAACTTCCCAGACTC...AAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGGATACCTCCGATGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CCA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCACGTATCTTCAAAAATaGATCCCAGTTCATATCTTC | + |
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Preference number: 4 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPTYLQK*IPVHIF Trigger: GAAGATATGAACTGGGATCCATTTTTGAAGATACGT...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| 3UTR CAA 72 bp | GTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTaGATGGAAGTGTTGGCTTCCCAAATACCTGAATTT | + |
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Preference number: 4 (lower is better) Translates to: VAFPVFLVLFPC*MEVLASQIPEF Trigger: AAATTCAGGTATTTGGGAAGCCAACACTTCCATCAAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR TCA 90 bp | TCATCGGAGGTATCCTGTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTTAGAGACCGATGTCTGTaGTTAACACACCTTAATATA | + |
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Preference number: 4 (lower is better) Translates to: SSEVSCGFPCLSCAVPLLRDRCL*LTHLNI Trigger: TATATTAAGGTGTGTTAATCACAGACATCGGTCTCT...AAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGGATACCTCCGATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR GCA 90 bp | TTGAGGCTTTTGGTGAACTTTAGAGGCATGAACCTTTATGTTTTGAGTTTGTGGCCCTCCAAGAGTGGCTaGAAAGCTCGATGTCAATCC | + |
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Preference number: 4 (lower is better) Translates to: LRLLVNFRGMNLYVLSLWPSKSG*KARCQS Trigger: GGATTGACATCGAGCTTTGCAGCCACTCTTGGAGGG...CCACAAACTCAAAACATAAAGGTTCATGCCTCTAAAGTTCACCAAAAGCCTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR TCA 90 bp | TTGAGGCTTTTGGTGAACTTTAGAGGCATGAACCTTTATGTTTTGAGTTTGTGGTATCAGGCCTGTCAGTaGGCTTTTCATTTCATAACG | + |
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Preference number: 4 (lower is better) Translates to: LRLLVNFRGMNLYVLSLWYQACQ*AFHFIT Trigger: CGTTATGAAATGAAAAGCTCACTGACAGGCCTGATA...CCACAAACTCAAAACATAAAGGTTCATGCCTCTAAAGTTCACCAAAAGCCTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR TCA 90 bp | TTGAGGCTTTTGGTGAACTTTAGAGGCATGAACCTTTATGTTTTGAGTTTGTGGTTATTCCACATTCATTaGCATCCCACAGAACACATG | + |
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Preference number: 4 (lower is better) Translates to: LRLLVNFRGMNLYVLSLWLFHIH*HPTEHM Trigger: CATGTGTTCTGTGGGATGTCAATGAATGTGGAATAA...CCACAAACTCAAAACATAAAGGTTCATGCCTCTAAAGTTCACCAAAAGCCTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CCA 90 bp | TTGAGGCTTTTGGTGAACTTTAGAGGCATGAACCTTTATGTTTTGAGTTTGTGGAAATGCCAAGAAATATaGGCAAGTTTGAACACCGAG | + |
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Preference number: 4 (lower is better) Translates to: LRLLVNFRGMNLYVLSLWKCQEI*ASLNTE Trigger: CTCGGTGTTCAAACTTGCCCATATTTCTTGGCATTT...CCACAAACTCAAAACATAAAGGTTCATGCCTCTAAAGTTCACCAAAAGCCTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR GCA 90 bp | TTGAGGCTTTTGGTGAACTTTAGAGGCATGAACCTTTATGTTTTGAGTTTGTGGAGCTACCAGCATATGTaGCATCTTGATGTTATCATA | + |
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Preference number: 4 (lower is better) Translates to: LRLLVNFRGMNLYVLSLWSYQHM*HLDVII Trigger: TATGATAACATCAAGATGGCACATATGCTGGTAGCT...CCACAAACTCAAAACATAAAGGTTCATGCCTCTAAAGTTCACCAAAAGCCTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CCA 90 bp | CCACCTGGGAGGGCGAAGCAGACGCACGGCGTGGGGTGCCTGGGCTaGAAGGGACGAAAGCCGGGTTCTCTATTCCTTTGGAGCCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: PPGRAKQTHGVGCLG*KGRKPGSLFLWSPA Trigger: TGCAGGGCTCCAAAGGAATAGAGAACCCGGCTTTCGTCCCTTCCAGCCCAGGCACCCCACGCCGTGCGTCTGCTTCGCCCTCCCAGGTGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CCA 90 bp | GACCTCCACCTGGGAGGGCGAAGCAGACGCACGGCGTGGGGTGCCTaGGCTGGAAGGGACGAAAGCCGGGTTCTCTATTCCTTTGGAGCC | + |
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Preference number: 5 (lower is better) Translates to: DLHLGGRSRRTAWGA*AGRDESRVLYSFGA Trigger: GGCTCCAAAGGAATAGAGAACCCGGCTTTCGTCCCTTCCAGCCCAGGCACCCCACGCCGTGCGTCTGCTTCGCCCTCCCAGGTGGAGGTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CCA 90 bp | CACAGCAGAGACCTCCACCTGGGAGGGCGAAGCAGACGCACGGCGTaGGGTGCCTGGGCTGGAAGGGACGAAAGCCGGGTTCTCTATTCC | + |
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Preference number: 5 (lower is better) Translates to: HSRDLHLGGRSRRTA*GAWAGRDESRVLYS Trigger: GGAATAGAGAACCCGGCTTTCGTCCCTTCCAGCCCAGGCACCCCACGCCGTGCGTCTGCTTCGCCCTCCCAGGTGGAGGTCTCTGCTGTG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS GCA 90 bp | CAGAGACCTCCACCTGGGAGGGCGAAGCAGACGCACGGCGTGGGGTaGCTGGGCTGGAAGGGACGAAAGCCGGGTTCTCTATTCCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: QRPPPGRAKQTHGVG*LGWKGRKPGSLFLW Trigger: CCAAAGGAATAGAGAACCCGGCTTTCGTCCCTTCCAGCCCAGGCACCCCACGCCGTGCGTCTGCTTCGCCCTCCCAGGTGGAGGTCTCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CCA 90 bp | GAGGCTCCTCAGATTCCCGAGGCTGCGAACCCCCATTCTGATTCCTaGAGGCCACAGCAGAGACCTCCACCTGGGAGGGCGAAGCAGACG | + |
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Preference number: 5 (lower is better) Translates to: EAPQIPEAANPHSDS*RPQQRPPPGRAKQT Trigger: CGTCTGCTTCGCCCTCCCAGGTGGAGGTCTCTGCTGTGGCCTCCAGGAATCAGAATGGGGGTTCGCAGCCTCGGGAATCTGAGGAGCCTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CAA 90 bp | ACTCATAAAGAGCTAACATGGATGGTACGGGGTGTGGGGTGGTTGGCTAGGGAAGCGGGGATGGCTCAGTaGACTTCTGAGGCTCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: THKELTWMVRGVGWLAREAGMAQ*TSEAPQ Trigger: CTGAGGAGCCTCAGAAGTCAACTGAGCCATCCCCGC...TTCCCTAGCCAACCACCCCACACCCCGTACCATCCATGTTAGCTCTTTATGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CAA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCGGTCCCCAGCAACAATaGTCCCAGGACAAAGACATA | + |
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Preference number: 5 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPGPQQQ*SQDKDI Trigger: TATGTCTTTGTCCTGGGACAATTGTTGCTGGGGACC...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CAA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCGTCCCTGGTAAATGCTaGGGAAAACAGGAGAAAGGC | + |
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Preference number: 5 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPVPGKC*GKQEKG Trigger: GCCTTTCTCCTGTTTTCCCAAGCATTTACCAGGGAC...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CAA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCGGAAGTTTTGCCAGCTaGAATTTTTGCTGTCCCTGG | + |
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Preference number: 5 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPGSFAS*NFCCPW Trigger: CCAGGGACAGCAAAAATTCAAGCTGGCAAAACTTCC...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CAA 90 bp | TCATCGGAGGTATCCTGTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTTCGCAAACAGTTGCAGTaGGCATTACAAGGTGCAGTC | + |
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Preference number: 5 (lower is better) Translates to: SSEVSCGFPCLSCAVPLLRKQLQ*ALQGAV Trigger: GACTGCACCTTGTAATGCCAACTGCAACTGTTTGCG...AAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGGATACCTCCGATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CAA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCCCTTGGGTTTCCTGTTaGAAACTGAGTTTAAACAAC | + |
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Preference number: 5 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPPWVSC*KLSLNN Trigger: GTTGTTTAAACTCAGTTTCAAACAGGAAACCCAAGG...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CAA 90 bp | TTGAGGCTTTTGGTGAACTTTAGAGGCATGAACCTTTATGTTTTGAGTTTGTGGGCGAGCCAGCGAGGTTaGTGTCCTCTCTCCCCAAAG | + |
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Preference number: 5 (lower is better) Translates to: LRLLVNFRGMNLYVLSLWASQRG*CPLSPK Trigger: CTTTGGGGAGAGAGGACACAAACCTCGCTGGCTCGC...CCACAAACTCAAAACATAAAGGTTCATGCCTCTAAAGTTCACCAAAAGCCTCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CAA 90 bp | ACTAGACAATGGTGCCTTGGCACAGGATGTTCTCACAGGCAGGAGCCAGTTCCCACAATCGCAAGTCCATaGAAGAATATGGTGATAACT | + |
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Preference number: 5 (lower is better) Translates to: TRQWCLGTGCSHRQEPVPTIASP*KNMVIT Trigger: AGTTATCACCATATTCTTCAATGGACTTGCGATTGT...GGGAACTGGCTCCTGCCTGTGAGAACATCCTGTGCCAAGGCACCATTGTCTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CAA 90 bp | TCATCGGAGGTATCCTGTGGCTTTCCCTGTCTTTCTTGTGCTGTTCCCTTGCTTCCTTCATTTTCTGCTTaGTCTAGATCCTCTTCGACC | + |
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Preference number: 5 (lower is better) Translates to: SSEVSCGFPCLSCAVPLLPSFSA*SRSSST Trigger: GGTCGAAGAGGATCTAGACAAAGCAGAAAATGAAGG...AAGCAAGGGAACAGCACAAGAAAGACAGGGAAAGCCACAGGATACCTCCGATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS GCA 90 bp | TTCCATCACTTCCACAGAGTGGGTAATAGTAGGACCGCAAACAGTTaGAGTTGGCATTACAAGGTGCAGTCAAATTCCCCATTTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: FHHFHRVGNSRTANS*SWHYKVQSNSPFLQ Trigger: CTGGAGAAATGGGGAATTTGACTGCACCTTGTAATGCCAACTGCAACTGTTTGCGGTCCTACTATTACCCACTCTGTGGAAGTGATGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS TCA 90 bp | CTCTTCGACCGAAATAGTAGACACAATGACATTCTGACTTTGAAATaGTACCTCTGTTCCTGGGGGCGGTGGTTTATAGAGAACAATCGC | + |
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Preference number: 5 (lower is better) Translates to: LFDRNSRHNDILTLK*YLCSWGRWFIENNR Trigger: GCGATTGTTCTCTATAAACCACCGCCCCCAGGAACAGAGGTATCATTTCAAAGTCAGAATGTCATTGTGTCTACTATTTCGGTCGAAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS-3UTR CAA 90 bp | TTGAGGCTTTTGGTGAACTTTAGAGGCATGAACCTTTATGTTTTGAGTTTGTGGTTTATTCCACATTCATaGACATCCCACAGAACACAT | + |
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Preference number: 5 (lower is better) Translates to: LRLLVNFRGMNLYVLSLWFIPHS*TSHRTH Trigger: ATGTGTTCTGTGGGATGTCAATGAATGTGGAATAAA...CCACAAACTCAAAACATAAAGGTTCATGCCTCTAAAGTTCACCAAAAGCCTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CCA 72 bp | GACCTCCACCTGGGAGGGCGAAGCAGACGCACGGCGTaGGGTGCCTGGGCTGGAAGGGACGAAAGCCGGGTT | + |
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Preference number: 6 (lower is better) Translates to: DLHLGGRSRRTA*GAWAGRDESRV Trigger: AACCCGGCTTTCGTCCCTTCCAGCCCAGGCACCCCACGCCGTGCGTCTGCTTCGCCCTCCCAGGTGGAGGTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CCA 72 bp | CTGGGAGGGCGAAGCAGACGCACGGCGTGGGGTGCCTaGGCTGGAAGGGACGAAAGCCGGGTTCTCTATTCC | + |
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Preference number: 6 (lower is better) Translates to: LGGRSRRTAWGA*AGRDESRVLYS Trigger: GGAATAGAGAACCCGGCTTTCGTCCCTTCCAGCCCAGGCACCCCACGCCGTGCGTCTGCTTCGCCCTCCCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CCA 72 bp | CAGATTCCCGAGGCTGCGAACCCCCATTCTGATTCCTaGAGGCCACAGCAGAGACCTCCACCTGGGAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: QIPEAANPHSDS*RPQQRPPPGRA Trigger: CGCCCTCCCAGGTGGAGGTCTCTGCTGTGGCCTCCAGGAATCAGAATGGGGGTTCGCAGCCTCGGGAATCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS TCA 72 bp | GGCTCCTCAGATTCCCGAGGCTGCGAACCCCCATTCTaGTTCCTGGAGGCCACAGCAGAGACCTCCACCTGG | + |
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Preference number: 6 (lower is better) Translates to: GSSDSRGCEPPF*FLEATAETSTW Trigger: CCAGGTGGAGGTCTCTGCTGTGGCCTCCAGGAATCAGAATGGGGGTTCGCAGCCTCGGGAATCTGAGGAGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS TCA 72 bp | GGATTCGAAGAAGGCGGGGATGGCTCAGTTGACTTCTaGGGCTCCTCAGATTCCCGAGGCTGCGAACCCCCA | + |
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Preference number: 6 (lower is better) Translates to: GFEEGGDGSVDF*GSSDSRGCEPP Trigger: TGGGGGTTCGCAGCCTCGGGAATCTGAGGAGCCTCAGAAGTCAACTGAGCCATCCCCGCCTTCTTCGAATCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CAA 72 bp | AAGCTGGGGGATTCGAAGAAGGCGGGGATGGCTCAGTaGACTTCTGAGGCTCCTCAGATTCCCGAGGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: KLGDSKKAGMAQ*TSEAPQIPEAA Trigger: CGCAGCCTCGGGAATCTGAGGAGCCTCAGAAGTCAACTGAGCCATCCCCGCCTTCTTCGAATCCCCCAGCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CAA 90 bp | GCTCCCAGGCCTATCATAAAGGATGCAAAGGCGAGCCAGCGAGGTTaGTGTCCTCTCTCCCCAAAGAAAGACACAAATAGAGATAACACA | + |
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Preference number: 6 (lower is better) Translates to: APRPIIKDAKASQRG*CPLSPKKDTNRDNT Trigger: TGTGTTATCTCTATTTGTGTCTTTCTTTGGGGAGAGAGGACACAAACCTCGCTGGCTCGCCTTTGCATCCTTTATGATAGGCCTGGGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS GCA 72 bp | TTCCACAGAGTGGGTAATAGTAGGACCGCAAACAGTTaGAGTTGGCATTACAAGGTGCAGTCAAATTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: FHRVGNSRTANS*SWHYKVQSNSP Trigger: TGGGGAATTTGACTGCACCTTGTAATGCCAACTGCAACTGTTTGCGGTCCTACTATTACCCACTCTGTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CCA 72 bp | GGGAGAAAAATACTGGATTCCATCACTTCCACAGAGTaGGTAATAGTAGGACCGCAAACAGTTGCAGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: GRKILDSITSTE*VIVGPQTVAVG Trigger: GCCAACTGCAACTGTTTGCGGTCCTACTATTACCCACTCTGTGGAAGTGATGGAATCCAGTATTTTTCTCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CAA 72 bp | CCTATCATAAAGGATGCAAAGGCGAGCCAGCGAGGTTaGTGTCCTCTCTCCCCAAAGAAAGACACAAATAGA | + |
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Preference number: 6 (lower is better) Translates to: PIIKDAKASQRG*CPLSPKKDTNR Trigger: TCTATTTGTGTCTTTCTTTGGGGAGAGAGGACACAAACCTCGCTGGCTCGCCTTTGCATCCTTTATGATAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CAA 72 bp | CAGCCACCGGGGATCATCCTCAGTCAGATCCGAACTTaGTCCCATAGCAATATCAATGTACATTGTCAACAG | + |
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Preference number: 6 (lower is better) Translates to: QPPGIILSQIRT*SHSNINVHCQQ Trigger: CTGTTGACAATGTACATTGATATTGCTATGGGACAAAGTTCGGATCTGACTGAGGATGATCCCCGGTGGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS TCA 72 bp | CGAAATAGTAGACACAATGACATTCTGACTTTGAAATaGTACCTCTGTTCCTGGGGGCGGTGGTTTATAGAG | + |
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Preference number: 6 (lower is better) Translates to: RNSRHNDILTLK*YLCSWGRWFIE Trigger: CTCTATAAACCACCGCCCCCAGGAACAGAGGTATCATTTCAAAGTCAGAATGTCATTGTGTCTACTATTTCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS CAA 72 bp | TACAGGAACAATTATAATATACCTTGGGTTTCCTGTTaGAAACTGAGTTTAAACAACCTGCAAAGCAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: YRNNYNIPWVSC*KLSLNNLQSRE Trigger: CTCCCTGCTTTGCAGGTTGTTTAAACTCAGTTTCAAACAGGAAACCCAAGGTATATTATAATTGTTCCTGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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| CDS GCA 72 bp | AACTTTACAAGTAACACTTATAGCTACCAGCATATGTaGCATCTTGATGTTATCATAAATCCAACATGCTCC | + |
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Preference number: 6 (lower is better) Translates to: NFTSNTYSYQHM*HLDVIINPTCS Trigger: GGAGCATGTTGGATTTATGATAACATCAAGATGGCACATATGCTGGTAGCTATAAGTGTTACTTGTAAAGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071985.6 |
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