Pregenerated sensors for SLCO1B2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030236Ensembl transcript IDs: ENSMUST00000042812.9, ENSMUST00000203597.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGTGTCTGGCACACACTTATCTCAGAACTGAAAGGCCTCCGGAGTaGAGGCTTACTTATTCATTGCTCTTAGCTTTCTTCAGTCAATGT | + |
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Preference number: 1 (lower is better) Translates to: QCLAHTYLRTERPPE*RLTYSLLLAFFSQC Trigger: ACATTGACTGAAGAAAGCTAAGAGCAATGAATAAGTAAGCCTTCACTCCGGAGGCCTTTCAGTTCTGAGATAAGTGTGTGCCAGACACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| 3UTR TCA 90 bp | TGCAAAATATATGACTTAACATGTGTACCAAAATATGCCACATCATaGAGCCCTCCATTGCAGAGACTTCAGGAGAGAATAGCACCATGC | + |
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Preference number: 1 (lower is better) Translates to: CKIYDLTCVPKYATS*SPPLQRLQERIAPC Trigger: GCATGGTGCTATTCTCTCCTGAAGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAGTCATATATTTTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| 3UTR CAA 90 bp | CCCTCCATTGCAGAGACTTCAGGAGAGAATAGCACCATGCAAATTTaGATTTTTGAAGACACTAATTTAAAGTCACCAATTTTCACATTC | + |
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Preference number: 2 (lower is better) Translates to: PSIAETSGENSTMQI*IFEDTNLKSPIFTF Trigger: GAATGTGAAAATTGGTGACTTTAAATTAGTGTCTTCAAAAATCAAAATTTGCATGGTGCTATTCTCTCCTGAAGTCTCTGCAATGGAGGG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| 3UTR-3UTR CAA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTAAGAACCGGGGTTGTTaGAAAACACAGCAACAGATG | + |
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Preference number: 3 (lower is better) Translates to: LNMCTKICHIMKPSIAETKNRGC*KTQQQM Trigger: CATCTGTTGCTGTGTTTTCAAACAACCCCGGTTCTT...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| 3UTR-3UTR CAA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTGTGAAAGAACCGGGGTaGTTTGAAAACACAGCAACA | + |
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Preference number: 3 (lower is better) Translates to: LNMCTKICHIMKPSIAETVKEPG*FENTAT Trigger: TGTTGCTGTGTTTTCAAACAACCCCGGTTCTTTCAC...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| 3UTR TCA 72 bp | TATGACTTAACATGTGTACCAAAATATGCCACATCATaGAGCCCTCCATTGCAGAGACTTCAGGAGAGAATA | + |
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Preference number: 3 (lower is better) Translates to: YDLTCVPKYATS*SPPLQRLQERI Trigger: TATTCTCTCCTGAAGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAGTCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| 3UTR GCA 72 bp | CTGTTTTTCTATTGGAACCTAACCAACTTCATTCATTaGATTCAGTCTTTACAACCCATACAGCTTCAGATG | + |
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Preference number: 3 (lower is better) Translates to: LFFYWNLTNFIH*IQSLQPIQLQM Trigger: CATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTTGGTTAGGTTCCAATAGAAAAACAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR TCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCGCCTGCGATGCTGTCTaGCCAAACTGCTGCTCTATA | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSACDAV*PNCCSI Trigger: TATAGAGCAGCAGTTTGGTCAGACAGCATCGCAGGC...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CCA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTCACGTGCTCCACAGCTaGTTACAGACCACTTCATAC | + |
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Preference number: 4 (lower is better) Translates to: LNMCTKICHIMKPSIAETHVLHS*LQTTSY Trigger: GTATGAAGTGGTCTGTAACCAGCTGTGGAGCACGTG...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR GCA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTAAGGTTGGGCAGCTTTaGTTGGATGCTGAGTTTGGT | + |
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Preference number: 4 (lower is better) Translates to: LNMCTKICHIMKPSIAETKVGQL*LDAEFG Trigger: ACCAAACTCAGCATCCAAGCAAAGCTGCCCAACCTT...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CCA 90 bp | TACAGATTCTCCATCATATGTAACATGAGAAATTCCTCAGTGAAAGAACCGGGGGAATGGTTTCCCTTCTaGAAACCAGAGCCGCTGACA | + |
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Preference number: 4 (lower is better) Translates to: YRFSIICNMRNSSVKEPGEWFPF*KPEPLT Trigger: TGTCAGCGGCTCTGGTTTCCAGAAGGGAAACCATTC...CCCCGGTTCTTTCACTGAGGAATTTCTCATGTTACATATGATGGAGAATCTGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR TCA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTCTTATCACCACGAAATaGTTTGCATCCTGCCAGACA | + |
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Preference number: 4 (lower is better) Translates to: LNMCTKICHIMKPSIAETLITTK*FASCQT Trigger: TGTCTGGCAGGATGCAAATCATTTCGTGGTGATAAG...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR GCA 90 bp | TACAGATTCTCCATCATATGTAACATGAGAAATTCCTCAGTGAAAGAACCGGGGCACCACGAAATGATTTaGATCCTGCCAGACAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: YRFSIICNMRNSSVKEPGHHEMI*ILPDKV Trigger: CACCTTGTCTGGCAGGATGCAAATCATTTCGTGGTG...CCCCGGTTCTTTCACTGAGGAATTTCTCATGTTACATATGATGGAGAATCTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCTTGGGCAGCTTTGCTTaGATGCTGAGTTTGGTCCAT | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSLGSFA*MLSLVH Trigger: ATGGACCAAACTCAGCATCCAAGCAAAGCTGCCCAA...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR TCA 90 bp | TACAGATTCTCCATCATATGTAACATGAGAAATTCCTCAGTGAAAGAACCGGGGACCTGTAATATCCCATaGAGAAATGTGGCAACGCAG | + |
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Preference number: 4 (lower is better) Translates to: YRFSIICNMRNSSVKEPGTCNIP*RNVATQ Trigger: CTGCGTTGCCACATTTCTTCATGGGATATTACAGGT...CCCCGGTTCTTTCACTGAGGAATTTCTCATGTTACATATGATGGAGAATCTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR TCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCTCCTGCCAGACAAGGTaGAATGTAAGTCACTCCATT | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSSCQTR*NVSHSI Trigger: AATGGAGTGACTTACATTTCACCTTGTCTGGCAGGA...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR TCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCTGTTCGTACAACCAGTaGATGGAATCCCATTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSCSYNQ*MESHSK Trigger: CTTGGAATGGGATTCCATTCACTGGTTGTACGAACA...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR GCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCCTGAATCCATCGCAGTaGCTTGTCTTCTCTGATCTT | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSLNPSQ*LVFSDL Trigger: AAGATCAGAGAAGACAAGGCACTGCGATGGATTCAG...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCTCCAGGTGTATGAGTTaGACCCCTTTTCACAACCTT | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSSRCMS*TPFHNL Trigger: AAGGTTGTGAAAAGGGGTCCAACTCATACACCTGGA...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CCA 90 bp | TACAGATTCTCCATCATATGTAACATGAGAAATTCCTCAGTGAAAGAACCGGGGGAAAACCAGTCAGGTTaGCAGGAGCTTGTTTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: YRFSIICNMRNSSVKEPGENQSG*QELVSL Trigger: AAGAGAAACAAGCTCCTGCCAACCTGACTGGTTTTC...CCCCGGTTCTTTCACTGAGGAATTTCTCATGTTACATATGATGGAGAATCTGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCTTTGCATTTGTCTCTTaGGCATTCACCCAAACGTGC | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSFAFVS*AFTQTC Trigger: GCACGTTTGGGTGAATGCCCAAGAGACAAATGCAAA...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CCA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTCGTACAACCAGTGAATaGAATCCCATTCCAAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: LNMCTKICHIMKPSIAETRTTSE*NPIPSD Trigger: ATCACTTGGAATGGGATTCCATTCACTGGTTGTACG...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR TCA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTCAGACAGGTTCCCATTaGTTTTTATCACAAATGCAG | + |
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Preference number: 4 (lower is better) Translates to: LNMCTKICHIMKPSIAETQTGSH*FLSQMQ Trigger: CTGCATTTGTGATAAAAATCAATGGGAACCTGTCTG...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CCA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTGATAAAGCCAAGGATTaGTCCGATCATTGCTATAGT | + |
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Preference number: 4 (lower is better) Translates to: LNMCTKICHIMKPSIAETDKAKD*SDHCYS Trigger: ACTATAGCAATGATCGGACCAATCCTTGGCTTTATC...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR TCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCCTTAGCAAACACAGATaGCATGATAAAGCCAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSLSKHR*HDKAKD Trigger: ATCCTTGGCTTTATCATGTCATCTGTGTTTGCTAAG...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR TCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCTTTCCTTTCCTTCTGTaGTCTCTTTGGAATTTTGGG | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSFPFLL*SLWNFG Trigger: CCCAAAATTCCAAAGAGATCACAGAAGGAAAGGAAA...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR TCA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTTACATGAAGAGATGCTaGATTTTTCCTTTCCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LNMCTKICHIMKPSIAETYMKRC*IFPFLL Trigger: CAGAAGGAAAGGAAAAATTCAGCATCTCTTCATGTA...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR TCA 90 bp | TACAGATTCTCCATCATATGTAACATGAGAAATTCCTCAGTGAAAGAACCGGGGTGTCTTCATCTGTTTTaGGTACATGAAGAGATGCTG | + |
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Preference number: 4 (lower is better) Translates to: YRFSIICNMRNSSVKEPGCLHLF*VHEEML Trigger: CAGCATCTCTTCATGTACTCAAAACAGATGAAGACA...CCCCGGTTCTTTCACTGAGGAATTTCTCATGTTACATATGATGGAGAATCTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| 3UTR CAA 72 bp | TGTAACATGAGAAATTCCTCAGTGAAAGAACCGGGGTaGTTTGAAAACACAGCAACAGATGTGTCTTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: CNMRNSSVKEPG*FENTATDVSFS Trigger: AGAGAAAGACACATCTGTTGCTGTGTTTTCAAACAACCCCGGTTCTTTCACTGAGGAATTTCTCATGTTACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCCAATCAAACCGGAAATaGAAGATGGTATGTCAAATC | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSQSNRK*KMVCQI Trigger: GATTTGACATACCATCTTCCATTTCCGGTTTGATTG...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCTTTCTCTTGTGTTGTTaGATTAGTCACGGGATTCTT | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSFLLCC*ISHGIL Trigger: AAGAATCCCGTGACTAATCCAACAACACAAGAGAAA...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR GCA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCGATTTTTATCACAAATaGAGTCCGAGTTGCAATAAG | + |
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Preference number: 4 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSDFYHK*SPSCNK Trigger: CTTATTGCAACTCGGACTGCATTTGTGATAAAAATC...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| 3UTR CAA 72 bp | CCTGTTTTTCTATTGGAACCTAACCAACTTCATTCATaGCATTCAGTCTTTACAACCCATACAGCTTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: PVFLLEPNQLHS*HSVFTTHTASD Trigger: ATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTTGGTTAGGTTCCAATAGAAAAACAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CAA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCGTTGGGCAGCTTTGCTaGGATGCTGAGTTTGGTCCA | + |
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Preference number: 5 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSVGQLC*DAEFGP Trigger: TGGACCAAACTCAGCATCCAAGCAAAGCTGCCCAAC...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CAA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTTTTTGCATTTGTCTCTaGGGCATTCACCCAAACGTG | + |
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Preference number: 5 (lower is better) Translates to: LNMCTKICHIMKPSIAETFCICL*GIHPNV Trigger: CACGTTTGGGTGAATGCCCAAGAGACAAATGCAAAA...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CAA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTTTAGTCACGGGATTCTaGTCTTCATCTGTTTTGAGT | + |
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Preference number: 5 (lower is better) Translates to: LNMCTKICHIMKPSIAETLVTGF*SSSVLS Trigger: ACTCAAAACAGATGAAGACAAGAATCCCGTGACTAA...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CAA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCAGGCCAGCAAATGCCTaGTTTTCACAGATTAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSRPANA*FSQIRR Trigger: TCTTCTAATCTGTGAAAACAAGGCATTTGCTGGCCT...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CAA 90 bp | TACAGATTCTCCATCATATGTAACATGAGAAATTCCTCAGTGAAAGAACCGGGGTATTTGGTTTTGCATTaGTCTCTTGGGCATTCACCC | + |
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Preference number: 5 (lower is better) Translates to: YRFSIICNMRNSSVKEPGYLVLH*SLGHSP Trigger: GGGTGAATGCCCAAGAGACAAATGCAAAACCAAATA...CCCCGGTTCTTTCACTGAGGAATTTCTCATGTTACATATGATGGAGAATCTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CAA 90 bp | CTTAACATGTGTACCAAAATATGCCACATCATGAAGCCCTCCATTGCAGAGACTATGACATATTGTTCATaGGTAAGGATGCTTCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: LNMCTKICHIMKPSIAETMTYCS*VRMLLR Trigger: TCTGAGAAGCATCCTTACCAATGAACAATATGTCAT...AGTCTCTGCAATGGAGGGCTTCATGATGTGGCATATTTTGGTACACATGTTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS-3UTR CAA 90 bp | AACTTCATTCATTGCATTCAGTCTTTACAACCCATACAGCTTCAGATGCACAGCACAGACAGGTTCCCATaGATTTTTATCACAAATGCA | + |
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Preference number: 5 (lower is better) Translates to: NFIHCIQSLQPIQLQMHSTDRFP*IFITNA Trigger: TGCATTTGTGATAAAAATCAATGGGAACCTGTCTGT...GCTGTGCATCTGAAGCTGTATGGGTTGTAAAGACTGAATGCAATGAATGAAGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042812.9 |
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| CDS CAA 90 bp | TCATTGGTAAGGATGCTTCTCAGAGACCATAGAAAACCAGTCAGGTaGGCAGGAGCTTGTTTCTCTTGTGTTGTTGGATTAGTCACGGGA | + |
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Preference number: 6 (lower is better) Translates to: SLVRMLLRDHRKPVR*AGACFSCVVGLVTG Trigger: TCCCGTGACTAATCCAACAACACAAGAGAAACAAGCTCCTGCCAACCTGACTGGTTTTCTATGGTCTCTGAGAAGCATCCTTACCAATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042812.9 ENSMUST00000203597.2 |
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| CDS TCA 72 bp | GTGCTGAATGGTTTCCCTTCTGGAAACCAGAGCCGCTaGCACAACTGCAGTCATAGAATTCTATATTCATCA | + |
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Preference number: 6 (lower is better) Translates to: VLNGFPSGNQSR*HNCSHRILYSS Trigger: TGATGAATATAGAATTCTATGACTGCAGTTGTGTCAGCGGCTCTGGTTTCCAGAAGGGAAACCATTCAGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042812.9 ENSMUST00000203597.2 |
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| CDS CAA 72 bp | AGGATGCTTCTCAGAGACCATAGAAAACCAGTCAGGTaGGCAGGAGCTTGTTTCTCTTGTGTTGTTGGATTA | + |
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Preference number: 6 (lower is better) Translates to: RMLLRDHRKPVR*AGACFSCVVGL Trigger: TAATCCAACAACACAAGAGAAACAAGCTCCTGCCAACCTGACTGGTTTTCTATGGTCTCTGAGAAGCATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042812.9 ENSMUST00000203597.2 |
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| CDS CCA 72 bp | AGTCAGGTTGGCAGGAGCTTGTTTCTCTTGTGTTGTTaGATTAGTCACGGGATTCTTGTCTTCATCTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: SQVGRSLFLLCC*ISHGILVFICF Trigger: AAAACAGATGAAGACAAGAATCCCGTGACTAATCCAACAACACAAGAGAAACAAGCTCCTGCCAACCTGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042812.9 ENSMUST00000203597.2 |
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| CDS TCA 72 bp | GTCACGGGATTCTTGTCTTCATCTGTTTTGAGTACATaGAGAGATGCTGAATTTTTCCTTTCCTTCTGTGAT | + |
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Preference number: 6 (lower is better) Translates to: VTGFLSSSVLST*RDAEFFLSFCD Trigger: ATCACAGAAGGAAAGGAAAAATTCAGCATCTCTTCATGTACTCAAAACAGATGAAGACAAGAATCCCGTGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042812.9 ENSMUST00000203597.2 |
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