Pregenerated sensors for SLC9B1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050150

Ensembl transcript IDs: ENSMUST00000078568.12, ENSMUST00000159658.8, ENSMUST00000161417.6

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	GATAGTGCCAAACCCAAGGTAGCAAGGCACATGCCAATGGTTTTTGATTCAAGACCAAAAAGAAGCGGCTaGAAAACATTCCATGTGTTT	+
Preference number: 2 (lower is better) Translates to: DSAKPKVARHMPMVFDSRPKRSG*KTFHVF Trigger: AAACACATGGAATGTTTTTCAGCCGCTTCTTTTTGG...TCTTGAATCAAAAACCATTGGCATGTGCCTTGCTACCTTGGGTTTGGCACTATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000161417.6
3UTR-3UTR CAA 90 bp	GATAGTGCCAAACCCAAGGTAGCAAGGCACATGCCAATGGTTTTTGATTCAAGAGTTTGCAACAATTTTTaGGATTCCAACCTTCTCTTC	+
Preference number: 3 (lower is better) Translates to: DSAKPKVARHMPMVFDSRVCNNF*DSNLLF Trigger: GAAGAGAAGGTTGGAATCCAAAAAATTGTTGCAAAC...TCTTGAATCAAAAACCATTGGCATGTGCCTTGCTACCTTGGGTTTGGCACTATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000161417.6
CDS-3UTR TCA 90 bp	AAACCCAAGGTAGCAAGGCACATGCCAATGGTTTTTGATTCAAGAGATTCAACAAATGTGCTGGCAGCCTaGTCTCCACTTGGAAAATAC	+
Preference number: 4 (lower is better) Translates to: KPKVARHMPMVFDSRDSTNVLAA*SPLGKY Trigger: GTATTTTCCAAGTGGAGATCAGGCTGCCAGCACATT...TGTTGAATCTCTTGAATCAAAAACCATTGGCATGTGCCTTGCTACCTTGGGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161417.6
CDS-3UTR CCA 90 bp	GATAGTGCCAAACCCAAGGTAGCAAGGCACATGCCAATGGTTTTTGATTCAAGAAGCCTGATCTCCACTTaGAAAATACTGAACAAAAAC	+
Preference number: 4 (lower is better) Translates to: DSAKPKVARHMPMVFDSRSLIST*KILNKN Trigger: GTTTTTGTTCAGTATTTTCCAAGTGGAGATCAGGCT...TCTTGAATCAAAAACCATTGGCATGTGCCTTGCTACCTTGGGTTTGGCACTATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000161417.6
CDS-3UTR CAA 90 bp	AAACCCAAGGTAGCAAGGCACATGCCAATGGTTTTTGATTCAAGAGATTCAACACAGCCTGATCTCCACTaGGAAAATACTGAACAAAAA	+
Preference number: 5 (lower is better) Translates to: KPKVARHMPMVFDSRDSTQPDLH*ENTEQK Trigger: TTTTTGTTCAGTATTTTCCAAGTGGAGATCAGGCTG...TGTTGAATCTCTTGAATCAAAAACCATTGGCATGTGCCTTGCTACCTTGGGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161417.6
CDS CCA 90 bp	CTGGTTTTGGTTCCACAGTTTCTTCATGAAAACTATCAGGATCTTTaGACATCTCAACAGTTACAGATGATTGGAAACCATCATCCTTCT	+
Preference number: 5 (lower is better) Translates to: LVLVPQFLHENYQDL*TSQQLQMIGNHHPS Trigger: AGAAGGATGATGGTTTCCAATCATCTGTAACTGTTGAGATGTCCAAAGATCCTGATAGTTTTCATGAAGAAACTGTGGAACCAAAACCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078568.12
CDS CAA 72 bp	ACCCCAATAAGAACGTCCCGCAAGGACGATAGGATGTaGCTAATCACACTACCCGAGGAAAAGACTATGCTC	+
Preference number: 6 (lower is better) Translates to: TPIRTSRKDDRM*LITLPEEKTML Trigger: GAGCATAGTCTTTTCCTCGGGTAGTGTGATTAGCAACATCCTATCGTCCTTGCGGGACGTTCTTATTGGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078568.12 ENSMUST00000161417.6
CDS CAA 90 bp	TTTTGTTTCCTTCCTTTCTATTTCGGTTGTTTGTGTTTCCTTCGTTaGTGTTTCCCTTCTTCCTGGTACCTTCCTTTCTGGTTCCTTCCT	+
Preference number: 6 (lower is better) Translates to: FCFLPFYFGCLCFLR*CFPSSWYLPFWFLP Trigger: AGGAAGGAACCAGAAAGGAAGGTACCAGGAAGAAGGGAAACACAAACGAAGGAAACACAAACAACCGAAATAGAAAGGAAGGAAACAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078568.12 ENSMUST00000159658.8
CDS CCA 72 bp	GTTCCACAGTTTCTTCATGAAAACTATCAGGATCTTTaGACATCTCAACAGTTACAGATGATTGGAAACCAT	+
Preference number: 6 (lower is better) Translates to: VPQFLHENYQDL*TSQQLQMIGNH Trigger: ATGGTTTCCAATCATCTGTAACTGTTGAGATGTCCAAAGATCCTGATAGTTTTCATGAAGAAACTGTGGAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078568.12