RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC9A8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039463

Ensembl transcript IDs: ENSMUST00000047815.13, ENSMUST00000073873.5, ENSMUST00000109218.7

Found 309 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGCATGGGTGTGTGTTTCTGTGACCCAAAGTCCCCGGAATCCAAGTaGCCCAAGTGGAGAGCACGGCCCCAGTGCCCTGGAGAGCTGGGG +
Preference number: 1 (lower is better)
Translates to: CMGVCFCDPKSPESK*PKWRARPQCPGELG
Trigger: CCCCAGCTCTCCAGGGCACTGGGGCCGTGCTCTCCACTTGGGCCACTTGGATTCCGGGGACTTTGGGTCACAGAAACACACACCCATGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 90 bp ATCTGCACACCGAGCCCCTCAGCCTGCCAAGCTGCTAGACATGGCTaGCTGGAGGGGCCTGTGACCACAGCACTGCAGGAAGCAAGTCAC +
Preference number: 1 (lower is better)
Translates to: ICTPSPSACQAARHG*LEGPVTTALQEASH
Trigger: GTGACTTGCTTCCTGCAGTGCTGTGGTCACAGGCCCCTCCAGTCAGCCATGTCTAGCAGCTTGGCAGGCTGAGGGGCTCGGTGTGCAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 90 bp TGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCCTCTaGGGGCCATCTTGTGTTCTGAGGAGGCTGAGTGAGGCACTGTGG +
Preference number: 1 (lower is better)
Translates to: WPGREAGRRLVTAVL*GPSCVLRRLSEALW
Trigger: CCACAGTGCCTCACTCAGCCTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR CCA 90 bp CCTGCCAGCTGCTGCTCCAGAGGTGAGGAAGGCATGGCCCAGGCATaGTGTGAGATGAGCAAGCAGCCTTCCAAGGCTTTCTCTGTGGCC +
Preference number: 1 (lower is better)
Translates to: PASCCSRGEEGMAQA*CEMSKQPSKAFSVA
Trigger: GGCCACAGAGAAAGCCTTGGAAGGCTGCTTGCTCATCTCACACCATGCCTGGGCCATGCCTTCCTCACCTCTGGAGCAGCAGCTGGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR TCA 90 bp CCTCAGCCTGCCAAGCTGCTAGACATGGCTGACTGGAGGGGCCTGTaGCCACAGCACTGCAGGAAGCAAGTCACTGATCCCAAGACCTGG +
Preference number: 1 (lower is better)
Translates to: PQPAKLLDMADWRGL*PQHCRKQVTDPKTW
Trigger: CCAGGTCTTGGGATCAGTGACTTGCTTCCTGCAGTGCTGTGGTCACAGGCCCCTCCAGTCAGCCATGTCTAGCAGCTTGGCAGGCTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 90 bp CTGGGAAGCTGGCTTCAGGTCTCAGCTAGAAGGAGGGGCCAAGAATaGTGGACCAGGGACAGGAGACCTGGAGACAAGGGGCCAACGGAA +
Preference number: 1 (lower is better)
Translates to: LGSWLQVSARRRGQE*WTRDRRPGDKGPTE
Trigger: TTCCGTTGGCCCCTTGTCTCCAGGTCTCCTGTCCCTGGTCCATCATTCTTGGCCCCTCCTTCTAGCTGAGACCTGAAGCCAGCTTCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 90 bp TGGTGTGAGATGAGCAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCTaGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGG +
Preference number: 1 (lower is better)
Translates to: WCEMSKQPSKAFSVA*QRSRKEAGNCRPLR
Trigger: CCGCAGAGGACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGAAGGCTGCTTGCTCATCTCACACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR CCA 90 bp GGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGCCTCTCTCTTaGGGACACAGACGCAGACCAGGGGCTGTTCTCTCTTGGCCTTGG +
Preference number: 1 (lower is better)
Translates to: GKCQDHVEKVLQPLS*GHRRRPGAVLSWPW
Trigger: CCAAGGCCAAGAGAGAACAGCCCCTGGTCTGCGTCTGTGTCCCCAAGAGAGAGGCTGAAGGACTTTCTCGACATGGTCCTGGCACTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR CCA 90 bp AGGGTGCTAAGCTTATGTCCTCCAGCAAGAGGCAGAGGCACCTCCTaGTGCTCAGCAGAGCTGGTGCTCAGTGAAGCTGGTGTGCAGAGC +
Preference number: 1 (lower is better)
Translates to: RVLSLCPPARGRGTS*CSAELVLSEAGVQS
Trigger: GCTCTGCACACCAGCTTCACTGAGCACCAGCTCTGCTGAGCACCAGGAGGTGCCTCTGCCTCTTGCTGGAGGACATAAGCTTAGCACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 90 bp GCACCTCCTGGTGCTCAGCAGAGCTGGTGCTCAGTGAAGCTGGTGTaGAGAGCTAACATTCTCACCAAGCTCTGGGAAGCTGGCTTCAGG +
Preference number: 1 (lower is better)
Translates to: APPGAQQSWCSVKLV*RANILTKLWEAGFR
Trigger: CCTGAAGCCAGCTTCCCAGAGCTTGGTGAGAATGTTAGCTCTGCACACCAGCTTCACTGAGCACCAGCTCTGCTGAGCACCAGGAGGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 90 bp GTCCTCCAGCAAGAGGCAGAGGCACCTCCTGGTGCTCAGCAGAGCTaGTGCTCAGTGAAGCTGGTGTGCAGAGCTAACATTCTCACCAAG +
Preference number: 1 (lower is better)
Translates to: VLQQEAEAPPGAQQS*CSVKLVCRANILTK
Trigger: CTTGGTGAGAATGTTAGCTCTGCACACCAGCTTCACTGAGCACCAGCTCTGCTGAGCACCAGGAGGTGCCTCTGCCTCTTGCTGGAGGAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 90 bp GTGAAGAGAGCCTTCAGTACAACTCTACCACTCACCAGCCTGTGCTaGCATGGCTCTAAAACAGGGCCACAGCCACCAAGCCTGGGTGAG +
Preference number: 1 (lower is better)
Translates to: VKRAFSTTLPLTSLC*HGSKTGPQPPSLGE
Trigger: CTCACCCAGGCTTGGTGGCTGTGGCCCTGTTTTAGAGCCATGGCAGCACAGGCTGGTGAGTGGTAGAGTTGTACTGAAGGCTCTCTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 90 bp TTCATTGTGCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTaGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGCCTCTCTC +
Preference number: 1 (lower is better)
Translates to: FIVPTGAIGAFPKAG*EVPGPCRESPSASL
Trigger: GAGAGAGGCTGAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGCACAATGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR CCA 90 bp GGAGGGCAGAGGACCCAAGCTCCAGAAACTGGTAAAAGACAAAGCTaGGCTCTGACCAGCAGCTGGGTGGAAGGAGCTTCACATTACAGG +
Preference number: 1 (lower is better)
Translates to: GGQRTQAPETGKRQS*ALTSSWVEGASHYR
Trigger: CCTGTAATGTGAAGCTCCTTCCACCCAGCTGCTGGTCAGAGCCCAGCTTTGTCTTTTACCAGTTTCTGGAGCTTGGGTCCTCTGCCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 90 bp CCAGGCCCTTCCCAAAGCAGCAAAGGCCTCAGGGACCTTGAACAATaGCTCCCGGCCAGTCTCCTTAAATCACAACAGAAAACTAGGGCT +
Preference number: 1 (lower is better)
Translates to: PGPSQSSKGLRDLEQ*LPASLLKSQQKTRA
Trigger: AGCCCTAGTTTTCTGTTGTGATTTAAGGAGACTGGCCGGGAGCCATTGTTCAAGGTCCCTGAGGCCTTTGCTGCTTTGGGAAGGGCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 90 bp TGCTCAGTGAAGCTGGTGTGCAGAGCTAACATTCTCACCAAGCTCTaGGAAGCTGGCTTCAGGTCTCAGCTAGAAGGAGGGGCCAAGAAT +
Preference number: 1 (lower is better)
Translates to: CSVKLVCRANILTKL*EAGFRSQLEGGAKN
Trigger: ATTCTTGGCCCCTCCTTCTAGCTGAGACCTGAAGCCAGCTTCCCAGAGCTTGGTGAGAATGTTAGCTCTGCACACCAGCTTCACTGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 90 bp ATGTCCCTCCCTACTCTTAAGTATATTAGCTTCTGTGTGCCCAGCTaGCCTGCCCCTTGGCCTAGACCTGAAATGCAACTGGGGCAGCAT +
Preference number: 1 (lower is better)
Translates to: MSLPTLKYISFCVPS*PAPWPRPEMQLGQH
Trigger: ATGCTGCCCCAGTTGCATTTCAGGTCTAGGCCAAGGGGCAGGCCAGCTGGGCACACAGAAGCTAATATACTTAAGAGTAGGGAGGGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 90 bp AGAGGACCCAAGCTCCAGAAACTGGTAAAAGACAAAGCTGGGCTCTaGCCAGCAGCTGGGTGGAAGGAGCTTCACATTACAGGGTCTAGA +
Preference number: 1 (lower is better)
Translates to: RGPKLQKLVKDKAGL*PAAGWKELHITGSR
Trigger: TCTAGACCCTGTAATGTGAAGCTCCTTCCACCCAGCTGCTGGTCAGAGCCCAGCTTTGTCTTTTACCAGTTTCTGGAGCTTGGGTCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 90 bp GAAGCAAACTGCATGTTTCCAACTTCACCGACTTCTGCAGCACAGTaGGGTGGCAGGGCATTAGAGACCTGGCTGTCCTTCCCAACATCA +
Preference number: 1 (lower is better)
Translates to: EANCMFPTSPTSAAQ*GGRALETWLSFPTS
Trigger: TGATGTTGGGAAGGACAGCCAGGTCTCTAATGCCCTGCCACCTCACTGTGCTGCAGAAGTCGGTGAAGTTGGAAACATGCAGTTTGCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 90 bp GTCTCTCAGGTAAAACGTCTGAAAAAGGAAAGGCATCTAGCACTTTaGTCCCTGGCCAATGGCTCTGAAGGGCTGGACAGTCTCTCAGGG +
Preference number: 1 (lower is better)
Translates to: VSQVKRLKKERHLAL*SLANGSEGLDSLSG
Trigger: CCCTGAGAGACTGTCCAGCCCTTCAGAGCCATTGGCCAGGGAGCAAAGTGCTAGATGCCTTTCCTTTTTCAGACGTTTTACCTGAGAGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 90 bp AAACTGCATGTTTCCAACTTCACCGACTTCTGCAGCACAGTGAGGTaGCAGGGCATTAGAGACCTGGCTGTCCTTCCCAACATCAGAACC +
Preference number: 1 (lower is better)
Translates to: KLHVSNFTDFCSTVR*QGIRDLAVLPNIRT
Trigger: GGTTCTGATGTTGGGAAGGACAGCCAGGTCTCTAATGCCCTGCCACCTCACTGTGCTGCAGAAGTCGGTGAAGTTGGAAACATGCAGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 90 bp AGCAAGTCACTGATCCCAAGACCTGGCTTGGAAATAGTGCAGGGATaGACCACCAGCAAGTACAGGGTGGCATGCTTACTGGCTAAAGTG +
Preference number: 1 (lower is better)
Translates to: SKSLIPRPGLEIVQG*TTSKYRVACLLAKV
Trigger: CACTTTAGCCAGTAAGCATGCCACCCTGTACTTGCTGGTGGTCCATCCCTGCACTATTTCCAAGCCAGGTCTTGGGATCAGTGACTTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 90 bp ACTCTTAAGTATATTAGCTTCTGTGTGCCCAGCTGGCCTGCCCCTTaGCCTAGACCTGAAATGCAACTGGGGCAGCATCTTGTAGCATCT +
Preference number: 1 (lower is better)
Translates to: TLKYISFCVPSWPAP*PRPEMQLGQHLVAS
Trigger: AGATGCTACAAGATGCTGCCCCAGTTGCATTTCAGGTCTAGGCCAAGGGGCAGGCCAGCTGGGCACACAGAAGCTAATATACTTAAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 90 bp GAGAGACAAGGAAGAGGACCATACCTTGGCTTTGCCAAGGACACGTaGGCTGCTGTACAGAAGCAAACTGCATGTTTCCAACTTCACCGA +
Preference number: 1 (lower is better)
Translates to: ERQGRGPYLGFAKDT*AAVQKQTACFQLHR
Trigger: TCGGTGAAGTTGGAAACATGCAGTTTGCTTCTGTACAGCAGCTCACGTGTCCTTGGCAAAGCCAAGGTATGGTCCTCTTCCTTGTCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 90 bp GCTTCCAAAACCCTCCATGTCAGAGAAGAAAGAAACCCAGGCTTGTaGAGAGAGCCTTCAGTACAACTCTACCACTCACCAGCCTGTGCT +
Preference number: 1 (lower is better)
Translates to: ASKTLHVREERNPGL*REPSVQLYHSPACA
Trigger: AGCACAGGCTGGTGAGTGGTAGAGTTGTACTGAAGGCTCTCTTCACAAGCCTGGGTTTCTTTCTTCTCTGACATGGAGGGTTTTGGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 90 bp GTCCTTCCCAACATCAGAACCACAGTACCTGAGGTTAGAAACACCTaGATCAAGGCCTACTTGGTCCCCATTGTGAGTCAGGGCCATATA +
Preference number: 1 (lower is better)
Translates to: VLPNIRTTVPEVRNT*IKAYLVPIVSQGHI
Trigger: TATATGGCCCTGACTCACAATGGGGACCAAGTAGGCCTTGATGCAGGTGTTTCTAACCTCAGGTACTGTGGTTCTGATGTTGGGAAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 90 bp CAGGGACAGGAGACCTGGAGACAAGGGGCCAACGGAATGATACCCTaGTTCTTCATCTCAAAGATGGAACCTGAGTTCTCAGAAAGAGAA +
Preference number: 1 (lower is better)
Translates to: QGQETWRQGANGMIP*FFISKMEPEFSERE
Trigger: TTCTCTTTCTGAGAACTCAGGTTCCATCTTTGAGATGAAGAATCAGGGTATCATTCCGTTGGCCCCTTGTCTCCAGGTCTCCTGTCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 90 bp TCTCAAAGATGGAACCTGAGTTCTCAGAAAGAGAACAACCCAGCCTaGACACAGCCCCTTAACCCCATCATTACACAAGGCCACAAAGTG +
Preference number: 1 (lower is better)
Translates to: SQRWNLSSQKENNPA*TQPLNPIITQGHKV
Trigger: CACTTTGTGGCCTTGTGTAATGATGGGGTTAAGGGGCTGTGTTCAGGCTGGGTTGTTCTCTTTCTGAGAACTCAGGTTCCATCTTTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 90 bp GGCCAACGGAATGATACCCTGATTCTTCATCTCAAAGATGGAACCTaGGTTCTCAGAAAGAGAACAACCCAGCCTGAACACAGCCCCTTA +
Preference number: 1 (lower is better)
Translates to: GQRNDTLILHLKDGT*VLRKRTTQPEHSPL
Trigger: TAAGGGGCTGTGTTCAGGCTGGGTTGTTCTCTTTCTGAGAACTCAGGTTCCATCTTTGAGATGAAGAATCAGGGTATCATTCCGTTGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp TCAGGACAGCAGCAGCTGCCTGGCCCCAGACCTACCACGGGCACATGGACCTGGAGTGCCCTGGAGAGCTaGGGCCGTGGCATGGAGGGC +
Preference number: 2 (lower is better)
Translates to: SGQQQLPGPRPTTGTWTWSALES*GRGMEG
Trigger: GCCCTCCATGCCACGGCCCCAGCTCTCCAGGGCACT...CCAGGTCCATGTGCCCGTGGTAGGTCTGGGGCCAGGCAGCTGCTGCTGTCCTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR GCA 90 bp TCGTGGGTGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCAGAGCACGGCCCCAGTaGCCTGGAGAGCTGGGGCCG +
Preference number: 2 (lower is better)
Translates to: SWVADSYWILFAPGAADLRARPQ*PGELGP
Trigger: CGGCCCCAGCTCTCCAGGGCACTGGGGCCGTGCTCT...GAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCACCCACGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp CCCCAAGCTCAGACCCCAGGCCCTTCCCAAAGCAGCAAAGGCCTCAGGGACCTTGCTGGGGCCGTGGCATaGAGGGCAGAGGACCCAAGC +
Preference number: 2 (lower is better)
Translates to: PQAQTPGPSQSSKGLRDLAGAVA*RAEDPS
Trigger: GCTTGGGTCCTCTGCCCTCCATGCCACGGCCCCAGC...AAGGTCCCTGAGGCCTTTGCTGCTTTGGGAAGGGCCTGGGGTCTGAGCTTGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR GCA 90 bp CCTTCCCCCAATTCAGCAGTGAGGGTGAGGGGAGTAGACAGGCAAGAGGGAAGCCAGTCTGCCTCCCCCTaGTGGGACCTGGTGCCCTGG +
Preference number: 2 (lower is better)
Translates to: PSPNSAVRVRGVDRQEGSQSASP*WDLVPW
Trigger: CCAGGGCACCAGGTCCCAGCAGGGGGAGGCAGACTG...GCTTCCCTCTTGCCTGTCTACTCCCCTCACCCTCACTGCTGAATTGGGGGAAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp GAGGCAGAGGCACCTCCTGGTGCTCAGCAGAGCTGGTGCTCAGTGAAGCTGGTGTCCAAGTGGCCCAAGTaGAGAGCACGGCCCCAGTGC +
Preference number: 2 (lower is better)
Translates to: EAEAPPGAQQSWCSVKLVSKWPK*RARPQC
Trigger: GCACTGGGGCCGTGCTCTCCACTTGGGCCACTTGGA...CACCAGCTTCACTGAGCACCAGCTCTGCTGAGCACCAGGAGGTGCCTCTGCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR GCA 90 bp GCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCGATGTGCCTGCCAGCTaGTGCTCCAGAGGTGAGGAA +
Preference number: 2 (lower is better)
Translates to: AHRGHRSLPKSRLGSARTDVPAS*CSRGEE
Trigger: TTCCTCACCTCTGGAGCAGCAGCTGGCAGGCACATC...GGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR-3UTR GCA 90 bp GCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCAATGGCAGATGTGCCTaGCAGCTGCTGCTCCAGAGG +
Preference number: 2 (lower is better)
Translates to: AHRGHRSLPKSRLGSARTNGRCA*QLLLQR
Trigger: CCTCTGGAGCAGCAGCTGGCAGGCACATCTGCCATT...GGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR-3UTR CCA 90 bp GCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCGAGGTGAGGAAGGCATaGCCCAGGCATGGTGTGAGA +
Preference number: 2 (lower is better)
Translates to: AHRGHRSLPKSRLGSARTEVRKA*PRHGVR
Trigger: TCTCACACCATGCCTGGGCCATGCCTTCCTCACCTC...GGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR-3UTR CCA 90 bp GATGGAGAAGCAGGGTCACTAGAAGGCCCTTCCTCCCACAGGCTCTCGCTGCCTGGCAGAGGCACCTCCTaGTGCTCAGCAGAGCTGGTG +
Preference number: 2 (lower is better)
Translates to: DGEAGSLEGPSSHRLSLPGRGTS*CSAELV
Trigger: CACCAGCTCTGCTGAGCACCAGGAGGTGCCTCTGCC...AGGCAGCGAGAGCCTGTGGGAGGAAGGGCCTTCTAGTGACCCTGCTTCTCCATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR TCA 90 bp CAACTCTACCACTCACCAGCCTGTGCTGCCATGGCTCTAAAACAGGGCCACAGCCTGCTGCTCCAGAGGTaGGGAAGGCATGGCCCAGGC +
Preference number: 2 (lower is better)
Translates to: QLYHSPACAAMALKQGHSLLLQR*GRHGPG
Trigger: GCCTGGGCCATGCCTTCCTCACCTCTGGAGCAGCAG...GCTGTGGCCCTGTTTTAGAGCCATGGCAGCACAGGCTGGTGAGTGGTAGAGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp GCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCGCTTTCTCTGTGGCCTaGCAGAGAAGCAGGAAGGAG +
Preference number: 2 (lower is better)
Translates to: AHRGHRSLPKSRLGSARTAFSVA*QRSRKE
Trigger: CTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGC...GGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR-3UTR CCA 90 bp TCAGGACAGCAGCAGCTGCCTGGCCCCAGACCTACCACGGGCACATGGACCTGGCAAGCTCTGGGAAGCTaGCTTCAGGTCTCAGCTAGA +
Preference number: 2 (lower is better)
Translates to: SGQQQLPGPRPTTGTWTWQALGS*LQVSAR
Trigger: TCTAGCTGAGACCTGAAGCCAGCTTCCCAGAGCTTG...CCAGGTCCATGTGCCCGTGGTAGGTCTGGGGCCAGGCAGCTGCTGCTGTCCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR GCA 90 bp TGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCTACTACACAGGACAGCAGCAGCTaGCTGGCCCCAGACCTACCA +
Preference number: 2 (lower is better)
Translates to: WQTATGSCLRQERLTSTTQDSSS*LAPDLP
Trigger: TGGTAGGTCTGGGGCCAGGCAGCTGCTGCTGTCCTG...TGTAGTAGAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR GCA 90 bp CAACTCTACCACTCACCAGCCTGTGCTGCCATGGCTCTAAAACAGGGCCACAGCCCTGCTGGGACCTGGTaGCCTGGACACATGCCAGCA +
Preference number: 2 (lower is better)
Translates to: QLYHSPACAAMALKQGHSPAGTW*PGHMPA
Trigger: TGCTGGCATGTGTCCAGGGCACCAGGTCCCAGCAGG...GCTGTGGCCCTGTTTTAGAGCCATGGCAGCACAGGCTGGTGAGTGGTAGAGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp CCCCAAGCTCAGACCCCAGGCCCTTCCCAAAGCAGCAAAGGCCTCAGGGACCTTGCTTTCTCTGTGGCCTaGCAGAGAAGCAGGAAGGAG +
Preference number: 2 (lower is better)
Translates to: PQAQTPGPSQSSKGLRDLAFSVA*QRSRKE
Trigger: CTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGC...AAGGTCCCTGAGGCCTTTGCTGCTTTGGGAAGGGCCTGGGGTCTGAGCTTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp TTCCTCCCACAGGCTCTCGCTGCCTCCTGTTCCTATGCGCGTTCAGTTAACAGTACAGCAGCAGCTGCCTaGCCCCAGACCTACCACGGG +
Preference number: 2 (lower is better)
Translates to: FLPQALAASCSYARSVNSTAAAA*PQTYHG
Trigger: CCCGTGGTAGGTCTGGGGCCAGGCAGCTGCTGCTGT...ACTGTTAACTGAACGCGCATAGGAACAGGAGGCAGCGAGAGCCTGTGGGAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR TCA 90 bp CAGAGCTGGTGCTCAGTGAAGCTGGTGTGCAGAGCTAACATTCTCACCAAGCTCCTGCTGCTCCAGAGGTaGGGAAGGCATGGCCCAGGC +
Preference number: 2 (lower is better)
Translates to: QSWCSVKLVCRANILTKLLLLQR*GRHGPG
Trigger: GCCTGGGCCATGCCTTCCTCACCTCTGGAGCAGCAG...GAGCTTGGTGAGAATGTTAGCTCTGCACACCAGCTTCACTGAGCACCAGCTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR TCA 90 bp ATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCTGCTGCTCCAGAGGTaGGGAAGGCATGGCCCAGGC +
Preference number: 2 (lower is better)
Translates to: IGAFPKAGWEVPGPCRESLLLQR*GRHGPG
Trigger: GCCTGGGCCATGCCTTCCTCACCTCTGGAGCAGCAG...ACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR-3UTR TCA 90 bp GATGGAGAAGCAGGGTCACTAGAAGGCCCTTCCTCCCACAGGCTCTCGCTGCCTCCAAGTTACTGCTGCTaGCACCAAGGCACCGTGACA +
Preference number: 2 (lower is better)
Translates to: DGEAGSLEGPSSHRLSLPPSYCC*HQGTVT
Trigger: TGTCACGGTGCCTTGGTGTCAGCAGCAGTAACTTGG...AGGCAGCGAGAGCCTGTGGGAGGAAGGGCCTTCTAGTGACCCTGCTTCTCCATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR GCA 90 bp ACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTAATGGCAGATGTGCCTaGCAGCTGCTGCTCCAGAGG +
Preference number: 2 (lower is better)
Translates to: TGAIGAFPKAGWEVPGPCNGRCA*QLLLQR
Trigger: CCTCTGGAGCAGCAGCTGGCAGGCACATCTGCCATT...ACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR-3UTR GCA 90 bp GGGGCCTGTGACCACAGCACTGCAGGAAGCAAGTCACTGATCCCAAGACCTGGCTCCAGCCCCTTATCCTaGGACATGCATGGGTGTGTG +
Preference number: 2 (lower is better)
Translates to: GACDHSTAGSKSLIPRPGSSPLS*DMHGCV
Trigger: CACACACCCATGCATGTCGCAGGATAAGGGGCTGGA...GCCAGGTCTTGGGATCAGTGACTTGCTTCCTGCAGTGCTGTGGTCACAGGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp CTCAGAAAGAGAACAACCCAGCCTGAACACAGCCCCTTAACCCCATCATTACACACGGCCCCAGTGCCCTaGAGAGCTGGGGCCGTGGCA +
Preference number: 2 (lower is better)
Translates to: LRKRTTQPEHSPLTPSLHTAPVP*RAGAVA
Trigger: TGCCACGGCCCCAGCTCTCCAGGGCACTGGGGCCGT...GTGTAATGATGGGGTTAAGGGGCTGTGTTCAGGCTGGGTTGTTCTCTTTCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp CAACTCTACCACTCACCAGCCTGTGCTGCCATGGCTCTAAAACAGGGCCACAGCTTCTGTGTGCCCAGCTaGCCTGCCCCTTGGCCTAGA +
Preference number: 2 (lower is better)
Translates to: QLYHSPACAAMALKQGHSFCVPS*PAPWPR
Trigger: TCTAGGCCAAGGGGCAGGCCAGCTGGGCACACAGAA...GCTGTGGCCCTGTTTTAGAGCCATGGCAGCACAGGCTGGTGAGTGGTAGAGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR TCA 90 bp GTGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCTACTACAGGCATGGTGTGAGATaGGCAAGCAGCCTTCCAAGG +
Preference number: 2 (lower is better)
Translates to: VADSYWILFAPGAADLYYRHGVR*ASSLPR
Trigger: CCTTGGAAGGCTGCTTGCTCATCTCACACCATGCCT...GTAGTAGAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp GTGCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACAATTCCAGGACAAATaGCAGATGTGCCTGCCAGCT +
Preference number: 2 (lower is better)
Translates to: VPTGAIGAFPKAGWEVPGQFQDK*QMCLPA
Trigger: AGCTGGCAGGCACATCTGCCATTTGTCCTGGAATTG...TCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR-3UTR CCA 90 bp CCCCAAGCTCAGACCCCAGGCCCTTCCCAAAGCAGCAAAGGCCTCAGGGACCTTATCCTGCGACATGCATaGGTGTGTGTTTCTGTGACC +
Preference number: 2 (lower is better)
Translates to: PQAQTPGPSQSSKGLRDLILRHA*VCVSVT
Trigger: GGTCACAGAAACACACACCCATGCATGTCGCAGGAT...AAGGTCCCTGAGGCCTTTGCTGCTTTGGGAAGGGCCTGGGGTCTGAGCTTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR GCA 90 bp TTCCTCCCACAGGCTCTCGCTGCCTCCTGTTCCTATGCGCGTTCAGTTAACAGTGATGTGCCTGCCAGCTaGTGCTCCAGAGGTGAGGAA +
Preference number: 2 (lower is better)
Translates to: FLPQALAASCSYARSVNSDVPAS*CSRGEE
Trigger: TTCCTCACCTCTGGAGCAGCAGCTGGCAGGCACATC...ACTGTTAACTGAACGCGCATAGGAACAGGAGGCAGCGAGAGCCTGTGGGAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp CTGGGCTCTGACCAGCAGCTGGGTGGAAGGAGCTTCACATTACAGGGTCTAGAAGGCATGGCCCAGGCATaGTGTGAGATGAGCAAGCAG +
Preference number: 2 (lower is better)
Translates to: LGSDQQLGGRSFTLQGLEGMAQA*CEMSKQ
Trigger: CTGCTTGCTCATCTCACACCATGCCTGGGCCATGCC...TTCTAGACCCTGTAATGTGAAGCTCCTTCCACCCAGCTGCTGGTCAGAGCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp CTGGGCTCTGACCAGCAGCTGGGTGGAAGGAGCTTCACATTACAGGGTCTAGAAGAGGTGAGGAAGGCATaGCCCAGGCATGGTGTGAGA +
Preference number: 2 (lower is better)
Translates to: LGSDQQLGGRSFTLQGLEEVRKA*PRHGVR
Trigger: TCTCACACCATGCCTGGGCCATGCCTTCCTCACCTC...TTCTAGACCCTGTAATGTGAAGCTCCTTCCACCCAGCTGCTGGTCAGAGCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR TCA 90 bp GGGGCCTGTGACCACAGCACTGCAGGAAGCAAGTCACTGATCCCAAGACCTGGCAAGGGGCCAACGGAATaGTACCCTGATTCTTCATCT +
Preference number: 2 (lower is better)
Translates to: GACDHSTAGSKSLIPRPGKGPTE*YPDSSS
Trigger: AGATGAAGAATCAGGGTATCATTCCGTTGGCCCCTT...GCCAGGTCTTGGGATCAGTGACTTGCTTCCTGCAGTGCTGTGGTCACAGGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp TTCCTCCCACAGGCTCTCGCTGCCTCCTGTTCCTATGCGCGTTCAGTTAACAGTCCAAGGCTTTCTCTGTaGCCTGGCAGAGAAGCAGGA +
Preference number: 2 (lower is better)
Translates to: FLPQALAASCSYARSVNSPRLSL*PGREAG
Trigger: TCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGG...ACTGTTAACTGAACGCGCATAGGAACAGGAGGCAGCGAGAGCCTGTGGGAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp CTGACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGCCAAGGCTTTCTCTGTaGCCTGGCAGAGAAGCAGGA +
Preference number: 2 (lower is better)
Translates to: LTPRHRDNSRTNGRCACQPRLSL*PGREAG
Trigger: TCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGG...CTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR-3UTR CCA 90 bp CATGTTTCCAACTTCACCGACTTCTGCAGCACAGTGAGGTGGCAGGGCATTAGATCCCCGGAATCCAAGTaGCCCAAGTGGAGAGCACGG +
Preference number: 2 (lower is better)
Translates to: HVSNFTDFCSTVRWQGIRSPESK*PKWRAR
Trigger: CCGTGCTCTCCACTTGGGCCACTTGGATTCCGGGGA...TCTAATGCCCTGCCACCTCACTGTGCTGCAGAAGTCGGTGAAGTTGGAAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp GATGGAGAAGCAGGGTCACTAGAAGGCCCTTCCTCCCACAGGCTCTCGCTGCCTGACCCTGTCTCCACATaGTATCTTAGAAACCTCGTG +
Preference number: 2 (lower is better)
Translates to: DGEAGSLEGPSSHRLSLPDPVST*YLRNLV
Trigger: CACGAGGTTTCTAAGATACCATGTGGAGACAGGGTC...AGGCAGCGAGAGCCTGTGGGAGGAAGGGCCTTCTAGTGACCCTGCTTCTCCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp CAACTCTACCACTCACCAGCCTGTGCTGCCATGGCTCTAAAACAGGGCCACAGCAACTCTGAAACTGGGTaGACAGGAGGGAGGCAGGAT +
Preference number: 2 (lower is better)
Translates to: QLYHSPACAAMALKQGHSNSETG*TGGRQD
Trigger: ATCCTGCCTCCCTCCTGTCCACCCAGTTTCAGAGTT...GCTGTGGCCCTGTTTTAGAGCCATGGCAGCACAGGCTGGTGAGTGGTAGAGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CAA 90 bp CTCAGACCCCAGGCCCTTCCCAAAGCAGCAAAGGCCTCAGGGACCTaGAACAATGGCTCCCGGCCAGTCTCCTTAAATCACAACAGAAAA +
Preference number: 2 (lower is better)
Translates to: LRPQALPKAAKASGT*NNGSRPVSLNHNRK
Trigger: TTTTCTGTTGTGATTTAAGGAGACTGGCCGGGAGCCATTGTTCAAGGTCCCTGAGGCCTTTGCTGCTTTGGGAAGGGCCTGGGGTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR TCA 90 bp CAGAGCTGGTGCTCAGTGAAGCTGGTGTGCAGAGCTAACATTCTCACCAAGCTCACTTCTGCAGCACAGTaGGGTGGCAGGGCATTAGAG +
Preference number: 2 (lower is better)
Translates to: QSWCSVKLVCRANILTKLTSAAQ*GGRALE
Trigger: CTCTAATGCCCTGCCACCTCACTGTGCTGCAGAAGT...GAGCTTGGTGAGAATGTTAGCTCTGCACACCAGCTTCACTGAGCACCAGCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR TCA 90 bp TCTGTGTGCCCAGCTGGCCTGCCCCTTGGCCTAGACCTGAAATGCAACTGGGGCCTCAAAGATGGAACCTaGGTTCTCAGAAAGAGAACA +
Preference number: 2 (lower is better)
Translates to: SVCPAGLPLGLDLKCNWGLKDGT*VLRKRT
Trigger: TGTTCTCTTTCTGAGAACTCAGGTTCCATCTTTGAG...GCCCCAGTTGCATTTCAGGTCTAGGCCAAGGGGCAGGCCAGCTGGGCACACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp CAGAGCTGGTGCTCAGTGAAGCTGGTGTGCAGAGCTAACATTCTCACCAAGCTCCCAAGGCTTTCTCTGTaGCCTGGCAGAGAAGCAGGA +
Preference number: 2 (lower is better)
Translates to: QSWCSVKLVCRANILTKLPRLSL*PGREAG
Trigger: TCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGG...GAGCTTGGTGAGAATGTTAGCTCTGCACACCAGCTTCACTGAGCACCAGCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR TCA 90 bp CTGTCCTTCCCAACATCAGAACCACAGTACCTGAGGTTAGAAACACCTGCATCAGACAAAGCTGGGCTCTaGCCAGCAGCTGGGTGGAAG +
Preference number: 2 (lower is better)
Translates to: LSFPTSEPQYLRLETPASDKAGL*PAAGWK
Trigger: CTTCCACCCAGCTGCTGGTCAGAGCCCAGCTTTGTC...TGATGCAGGTGTTTCTAACCTCAGGTACTGTGGTTCTGATGTTGGGAAGGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR GCA 90 bp CAACTCTACCACTCACCAGCCTGTGCTGCCATGGCTCTAAAACAGGGCCACAGCCCTTATCCTGCGACATaGATGGGTGTGTGTTTCTGT +
Preference number: 2 (lower is better)
Translates to: QLYHSPACAAMALKQGHSPYPAT*MGVCFC
Trigger: ACAGAAACACACACCCATGCATGTCGCAGGATAAGG...GCTGTGGCCCTGTTTTAGAGCCATGGCAGCACAGGCTGGTGAGTGGTAGAGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp GCTAAAGTGCCAGGTACCCAAGGGCACCCATGTCCCTCCCTACTCTTAAGTATAGCTCTGACCAGCAGCTaGGTGGAAGGAGCTTCACAT +
Preference number: 2 (lower is better)
Translates to: AKVPGTQGHPCPSLLLSIALTSS*VEGASH
Trigger: ATGTGAAGCTCCTTCCACCCAGCTGCTGGTCAGAGC...TATACTTAAGAGTAGGGAGGGACATGGGTGCCCTTGGGTACCTGGCACTTTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR TCA 90 bp TCAGAGAAGAAAGAAACCCAGGCTTGTGAAGAGAGCCTTCAGTACAACTCTACCCCTGGCCAATGGCTCTaGAGGGCTGGACAGTCTCTC +
Preference number: 2 (lower is better)
Translates to: SEKKETQACEESLQYNSTPGQWL*RAGQSL
Trigger: GAGAGACTGTCCAGCCCTTCAGAGCCATTGGCCAGG...GGTAGAGTTGTACTGAAGGCTCTCTTCACAAGCCTGGGTTTCTTTCTTCTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp TCAGAGAAGAAAGAAACCCAGGCTTGTGAAGAGAGCCTTCAGTACAACTCTACCTCCCCGGAATCCAAGTaGCCCAAGTGGAGAGCACGG +
Preference number: 2 (lower is better)
Translates to: SEKKETQACEESLQYNSTSPESK*PKWRAR
Trigger: CCGTGCTCTCCACTTGGGCCACTTGGATTCCGGGGA...GGTAGAGTTGTACTGAAGGCTCTCTTCACAAGCCTGGGTTTCTTTCTTCTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp TCGTGGGTGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCTCTTCATCTCAAAGATaGAACCTGAGTTCTCAGAAA +
Preference number: 2 (lower is better)
Translates to: SWVADSYWILFAPGAADLSSSQR*NLSSQK
Trigger: TTTCTGAGAACTCAGGTTCCATCTTTGAGATGAAGA...GAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCACCCACGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CAA 90 bp TCCAGGGCTAAGGTGAGAGACAAGGAAGAGGACCATACCTTGGCTTaGCCAAGGACACGTGAGCTGCTGTACAGAAGCAAACTGCATGTT +
Preference number: 2 (lower is better)
Translates to: SRAKVRDKEEDHTLA*PRTRELLYRSKLHV
Trigger: AACATGCAGTTTGCTTCTGTACAGCAGCTCACGTGTCCTTGGCAAAGCCAAGGTATGGTCCTCTTCCTTGTCTCTCACCTTAGCCCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR TCA 90 bp CATCAGTGTAAACATTTTCATTGTGCCCACAGGGGCCATAGGAGCCTTCCCAAAAGGCATGGTGTGAGATaGGCAAGCAGCCTTCCAAGG +
Preference number: 2 (lower is better)
Translates to: HQCKHFHCAHRGHRSLPKRHGVR*ASSLPR
Trigger: CCTTGGAAGGCTGCTTGCTCATCTCACACCATGCCT...TTTGGGAAGGCTCCTATGGCCCCTGTGGGCACAATGAAAATGTTTACACTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR TCA 90 bp TCAGAGAAGAAAGAAACCCAGGCTTGTGAAGAGAGCCTTCAGTACAACTCTACCAGGAGGGGCCAAGAATaGTGGACCAGGGACAGGAGA +
Preference number: 2 (lower is better)
Translates to: SEKKETQACEESLQYNSTRRGQE*WTRDRR
Trigger: TCTCCTGTCCCTGGTCCATCATTCTTGGCCCCTCCT...GGTAGAGTTGTACTGAAGGCTCTCTTCACAAGCCTGGGTTTCTTTCTTCTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR GCA 90 bp CCTTCCCCCAATTCAGCAGTGAGGGTGAGGGGAGTAGACAGGCAAGAGGGAAGCTTTAAGAAGACTCTCTaGTCAGTCTCTTGGCATTCT +
Preference number: 2 (lower is better)
Translates to: PSPNSAVRVRGVDRQEGSFKKTL*SVSWHS
Trigger: AGAATGCCAAGAGACTGAGCAGAGAGTCTTCTTAAA...GCTTCCCTCTTGCCTGTCTACTCCCCTCACCCTCACTGCTGAATTGGGGGAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR GCA 90 bp TCAGAGAAGAAAGAAACCCAGGCTTGTGAAGAGAGCCTTCAGTACAACTCTACCAAGCAGGCTGGGAAGTaGCAGGACCATGTCGAGAAA +
Preference number: 2 (lower is better)
Translates to: SEKKETQACEESLQYNSTKQAGK*QDHVEK
Trigger: TTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTT...GGTAGAGTTGTACTGAAGGCTCTCTTCACAAGCCTGGGTTTCTTTCTTCTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR GCA 90 bp CTCAGAAAGAGAACAACCCAGCCTGAACACAGCCCCTTAACCCCATCATTACACGAGGTTAGAAACACCTaGATCAAGGCCTACTTGGTC +
Preference number: 2 (lower is better)
Translates to: LRKRTTQPEHSPLTPSLHEVRNT*IKAYLV
Trigger: GACCAAGTAGGCCTTGATGCAGGTGTTTCTAACCTC...GTGTAATGATGGGGTTAAGGGGCTGTGTTCAGGCTGGGTTGTTCTCTTTCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CCA 90 bp TCAGAGAAGAAAGAAACCCAGGCTTGTGAAGAGAGCCTTCAGTACAACTCTACCATCCTGCGACATGCATaGGTGTGTGTTTCTGTGACC +
Preference number: 2 (lower is better)
Translates to: SEKKETQACEESLQYNSTILRHA*VCVSVT
Trigger: GGTCACAGAAACACACACCCATGCATGTCGCAGGAT...GGTAGAGTTGTACTGAAGGCTCTCTTCACAAGCCTGGGTTTCTTTCTTCTCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp CAAGTGGCCCAAGTGGAGAGCACGGCCCCAGTGCCCTaGAGAGCTGGGGCCGTGGCATGGAGGGCAGAGGAC +
Preference number: 3 (lower is better)
Translates to: QVAQVESTAPVP*RAGAVAWRAED
Trigger: GTCCTCTGCCCTCCATGCCACGGCCCCAGCTCTCCAGGGCACTGGGGCCGTGCTCTCCACTTGGGCCACTTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 72 bp GAATCCAAGTGGCCCAAGTGGAGAGCACGGCCCCAGTaGCCTGGAGAGCTGGGGCCGTGGCATGGAGGGCAG +
Preference number: 3 (lower is better)
Translates to: ESKWPKWRARPQ*PGELGPWHGGQ
Trigger: CTGCCCTCCATGCCACGGCCCCAGCTCTCCAGGGCACTGGGGCCGTGCTCTCCACTTGGGCCACTTGGATTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp AGAGCACGGCCCCAGTGCCCTGGAGAGCTGGGGCCGTaGCATGGAGGGCAGAGGACCCAAGCTCCAGAAACT +
Preference number: 3 (lower is better)
Translates to: RARPQCPGELGP*HGGQRTQAPET
Trigger: AGTTTCTGGAGCTTGGGTCCTCTGCCCTCCATGCCACGGCCCCAGCTCTCCAGGGCACTGGGGCCGTGCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp TGTGACCCAAAGTCCCCGGAATCCAAGTGGCCCAAGTaGAGAGCACGGCCCCAGTGCCCTGGAGAGCTGGGG +
Preference number: 3 (lower is better)
Translates to: CDPKSPESKWPK*RARPQCPGELG
Trigger: CCCCAGCTCTCCAGGGCACTGGGGCCGTGCTCTCCACTTGGGCCACTTGGATTCCGGGGACTTTGGGTCACA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp GCCATGGCTCTAAAACAGGGCCACAGCCACCAAGCCTaGGTGAGGGAGCCATGGCTCCTCCCCTCCCAACTC +
Preference number: 3 (lower is better)
Translates to: AMALKQGHSHQA*VREPWLLPSQL
Trigger: GAGTTGGGAGGGGAGGAGCCATGGCTCCCTCACCCAGGCTTGGTGGCTGTGGCCCTGTTTTAGAGCCATGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 72 bp GTACAGTGGCGGATGAAGGCCCACATGGGTAGTCGCTaGAGGGCCACGGATGGGCAGAGGGCACCACTCGTA +
Preference number: 3 (lower is better)
Translates to: VQWRMKAHMGSR*RATDGQRAPLV
Trigger: TACGAGTGGTGCCCTCTGCCCATCCGTGGCCCTTCAGCGACTACCCATGTGGGCCTTCATCCGCCACTGTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 72 bp CTGCCTCCTGTTCCTATGCGCGTTCAGTTAACAGTCTaGCTCCCCCTGCTGGGACCTGGTGCCCTGGACACA +
Preference number: 3 (lower is better)
Translates to: LPPVPMRVQLTV*LPLLGPGALDT
Trigger: TGTGTCCAGGGCACCAGGTCCCAGCAGGGGGAGGCAGACTGTTAACTGAACGCGCATAGGAACAGGAGGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp GTGTGTTTCTGTGACCCAAAGTCCCCGGAATCCAAGTaGCCCAAGTGGAGAGCACGGCCCCAGTGCCCTGGA +
Preference number: 3 (lower is better)
Translates to: VCFCDPKSPESK*PKWRARPQCPG
Trigger: TCCAGGGCACTGGGGCCGTGCTCTCCACTTGGGCCACTTGGATTCCGGGGACTTTGGGTCACAGAAACACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 72 bp GCCAAGCTGCTAGACATGGCTGACTGGAGGGGCCTGTaGCCACAGCACTGCAGGAAGCAAGTCACTGATCCC +
Preference number: 3 (lower is better)
Translates to: AKLLDMADWRGL*PQHCRKQVTDP
Trigger: GGGATCAGTGACTTGCTTCCTGCAGTGCTGTGGTCACAGGCCCCTCCAGTCAGCCATGTCTAGCAGCTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp CACAGACGCAGACCAGGGGCTGTTCTCTCTTGGCCTTaGCACCAAGTTACTGCTGCTGACACCAAGGCACCG +
Preference number: 3 (lower is better)
Translates to: HRRRPGAVLSWP*HQVTAADTKAP
Trigger: CGGTGCCTTGGTGTCAGCAGCAGTAACTTGGTGCCAAGGCCAAGAGAGAACAGCCCCTGGTCTGCGTCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR-3UTR CAA 90 bp CCCCAAGCTCAGACCCCAGGCCCTTCCCAAAGCAGCAAAGGCCTCAGGGACCTTATCCCAAGACCTGGCTaGGAAATAGTGCAGGGATGG +
Preference number: 3 (lower is better)
Translates to: PQAQTPGPSQSSKGLRDLIPRPG*EIVQGW
Trigger: CCATCCCTGCACTATTTCCAAGCCAGGTCTTGGGAT...AAGGTCCCTGAGGCCTTTGCTGCTTTGGGAAGGGCCTGGGGTCTGAGCTTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 72 bp AGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCCTCTaGGGGCCATCTTGTGTTCTGAGGAGGCTGAGTGAG +
Preference number: 3 (lower is better)
Translates to: REAGRRLVTAVL*GPSCVLRRLSE
Trigger: CTCACTCAGCCTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCTGCTTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR GCA 72 bp TTATGTCCTCCAGCAAGAGGCAGAGGCACCTCCTGGTaGTCAGCAGAGCTGGTGCTCAGTGAAGCTGGTGTG +
Preference number: 3 (lower is better)
Translates to: LCPPARGRGTSW*SAELVLSEAGV
Trigger: CACACCAGCTTCACTGAGCACCAGCTCTGCTGAGCACCAGGAGGTGCCTCTGCCTCTTGCTGGAGGACATAA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp TGCTGCTCCAGAGGTGAGGAAGGCATGGCCCAGGCATaGTGTGAGATGAGCAAGCAGCCTTCCAAGGCTTTC +
Preference number: 3 (lower is better)
Translates to: CCSRGEEGMAQA*CEMSKQPSKAF
Trigger: GAAAGCCTTGGAAGGCTGCTTGCTCATCTCACACCATGCCTGGGCCATGCCTTCCTCACCTCTGGAGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR CCA 72 bp AGCTTATGTCCTCCAGCAAGAGGCAGAGGCACCTCCTaGTGCTCAGCAGAGCTGGTGCTCAGTGAAGCTGGT +
Preference number: 3 (lower is better)
Translates to: SLCPPARGRGTS*CSAELVLSEAG
Trigger: ACCAGCTTCACTGAGCACCAGCTCTGCTGAGCACCAGGAGGTGCCTCTGCCTCTTGCTGGAGGACATAAGCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CAA 90 bp GTGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCTACTACGAAGAGGACCATACCTaGGCTTTGCCAAGGACACGT +
Preference number: 3 (lower is better)
Translates to: VADSYWILFAPGAADLYYEEDHT*ALPRTR
Trigger: ACGTGTCCTTGGCAAAGCCAAGGTATGGTCCTCTTC...GTAGTAGAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 72 bp GCCTTCAGTACAACTCTACCACTCACCAGCCTGTGCTaGCATGGCTCTAAAACAGGGCCACAGCCACCAAGC +
Preference number: 3 (lower is better)
Translates to: AFSTTLPLTSLC*HGSKTGPQPPS
Trigger: GCTTGGTGGCTGTGGCCCTGTTTTAGAGCCATGGCAGCACAGGCTGGTGAGTGGTAGAGTTGTACTGAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp ATGAGCAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCTaGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGT +
Preference number: 3 (lower is better)
Translates to: MSKQPSKAFSVA*QRSRKEAGNCR
Trigger: ACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGAAGGCTGCTTGCTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR CCA 72 bp CAGGACCATGTCGAGAAAGTCCTTCAGCCTCTCTCTTaGGGACACAGACGCAGACCAGGGGCTGTTCTCTCT +
Preference number: 3 (lower is better)
Translates to: QDHVEKVLQPLS*GHRRRPGAVLS
Trigger: AGAGAGAACAGCCCCTGGTCTGCGTCTGTGTCCCCAAGAGAGAGGCTGAAGGACTTTCTCGACATGGTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR CCA 72 bp CAAGAGGCAGAGGCACCTCCTGGTGCTCAGCAGAGCTaGTGCTCAGTGAAGCTGGTGTGCAGAGCTAACATT +
Preference number: 3 (lower is better)
Translates to: QEAEAPPGAQQS*CSVKLVCRANI
Trigger: AATGTTAGCTCTGCACACCAGCTTCACTGAGCACCAGCTCTGCTGAGCACCAGGAGGTGCCTCTGCCTCTTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp GATGGACCACCAGCAAGTACAGGGTGGCATGCTTACTaGCTAAAGTGCCAGGTACCCAAGGGCACCCATGTC +
Preference number: 3 (lower is better)
Translates to: DGPPASTGWHAY*LKCQVPKGTHV
Trigger: GACATGGGTGCCCTTGGGTACCTGGCACTTTAGCCAGTAAGCATGCCACCCTGTACTTGCTGGTGGTCCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 72 bp CCCTTATCCTGCGACATGCATGGGTGTGTGTTTCTGTaGCCCAAAGTCCCCGGAATCCAAGTGGCCCAAGTG +
Preference number: 3 (lower is better)
Translates to: PLSCDMHGCVFL*PKVPGIQVAQV
Trigger: CACTTGGGCCACTTGGATTCCGGGGACTTTGGGTCACAGAAACACACACCCATGCATGTCGCAGGATAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 72 bp AGAGCCTTCAGTACAACTCTACCACTCACCAGCCTGTaGTGCCATGGCTCTAAAACAGGGCCACAGCCACCA +
Preference number: 3 (lower is better)
Translates to: RAFSTTLPLTSL*CHGSKTGPQPP
Trigger: TGGTGGCTGTGGCCCTGTTTTAGAGCCATGGCAGCACAGGCTGGTGAGTGGTAGAGTTGTACTGAAGGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 72 bp AAGGCATCTAGCACTTTGCTCCCTGGCCAATGGCTCTaGAGGGCTGGACAGTCTCTCAGGGTGCTAAGCTTA +
Preference number: 3 (lower is better)
Translates to: KASSTLLPGQWL*RAGQSLRVLSL
Trigger: TAAGCTTAGCACCCTGAGAGACTGTCCAGCCCTTCAGAGCCATTGGCCAGGGAGCAAAGTGCTAGATGCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp AGGACCCAAGCTCCAGAAACTGGTAAAAGACAAAGCTaGGCTCTGACCAGCAGCTGGGTGGAAGGAGCTTCA +
Preference number: 3 (lower is better)
Translates to: RTQAPETGKRQS*ALTSSWVEGAS
Trigger: TGAAGCTCCTTCCACCCAGCTGCTGGTCAGAGCCCAGCTTTGTCTTTTACCAGTTTCTGGAGCTTGGGTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp AAGCTGGTGTGCAGAGCTAACATTCTCACCAAGCTCTaGGAAGCTGGCTTCAGGTCTCAGCTAGAAGGAGGG +
Preference number: 3 (lower is better)
Translates to: KLVCRANILTKL*EAGFRSQLEGG
Trigger: CCCTCCTTCTAGCTGAGACCTGAAGCCAGCTTCCCAGAGCTTGGTGAGAATGTTAGCTCTGCACACCAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp TATATTAGCTTCTGTGTGCCCAGCTGGCCTGCCCCTTaGCCTAGACCTGAAATGCAACTGGGGCAGCATCTT +
Preference number: 3 (lower is better)
Translates to: YISFCVPSWPAP*PRPEMQLGQHL
Trigger: AAGATGCTGCCCCAGTTGCATTTCAGGTCTAGGCCAAGGGGCAGGCCAGCTGGGCACACAGAAGCTAATATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp CTGATCCCAAGACCTGGCTTGGAAATAGTGCAGGGATaGACCACCAGCAAGTACAGGGTGGCATGCTTACTG +
Preference number: 3 (lower is better)
Translates to: LIPRPGLEIVQG*TTSKYRVACLL
Trigger: CAGTAAGCATGCCACCCTGTACTTGCTGGTGGTCCATCCCTGCACTATTTCCAAGCCAGGTCTTGGGATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp CAGCACTGCAGGAAGCAAGTCACTGATCCCAAGACCTaGCTTGGAAATAGTGCAGGGATGGACCACCAGCAA +
Preference number: 3 (lower is better)
Translates to: QHCRKQVTDPKT*LGNSAGMDHQQ
Trigger: TTGCTGGTGGTCCATCCCTGCACTATTTCCAAGCCAGGTCTTGGGATCAGTGACTTGCTTCCTGCAGTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp AGGACCCTGTCTCCACATGGTATCTTAGAAACCTCGTaGGTGGCAGACAGCTACTGGATCCTGTTTGCGCCA +
Preference number: 3 (lower is better)
Translates to: RTLSPHGILETS*VADSYWILFAP
Trigger: TGGCGCAAACAGGATCCAGTAGCTGTCTGCCACCCACGAGGTTTCTAAGATACCATGTGGAGACAGGGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 72 bp TGTCCCTCCCTACTCTTAAGTATATTAGCTTCTGTGTaGCCAGCTGGCCTGCCCCTTGGCCTAGACCTGAAA +
Preference number: 3 (lower is better)
Translates to: CPSLLLSILASV*PAGLPLGLDLK
Trigger: TTTCAGGTCTAGGCCAAGGGGCAGGCCAGCTGGGCACACAGAAGCTAATATACTTAAGAGTAGGGAGGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 72 bp TCAGTCTCTTGGCATTCTGCTGCACAAAAAGAAATCTaGACACCGAGCCCCTCAGCCTGCCAAGCTGCTAGA +
Preference number: 3 (lower is better)
Translates to: SVSWHSAAQKEI*TPSPSACQAAR
Trigger: TCTAGCAGCTTGGCAGGCTGAGGGGCTCGGTGTGCAGATTTCTTTTTGTGCAGCAGAATGCCAAGAGACTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp AGGAGCTTCACATTACAGGGTCTAGAAAGAGGCCGCTaGGGAGACAGAAGAATGAGAGATGAGGCAGTGGGA +
Preference number: 3 (lower is better)
Translates to: RSFTLQGLERGR*GDRRMRDEAVG
Trigger: TCCCACTGCCTCATCTCTCATTCTTCTGTCTCCCCAGCGGCCTCTTTCTAGACCCTGTAATGTGAAGCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 72 bp TGTTCTCTCTTGGCCTTGGCACCAAGTTACTGCTGCTaGCACCAAGGCACCGTGACAATTCCAGGACAAATG +
Preference number: 3 (lower is better)
Translates to: CSLLALAPSYCC*HQGTVTIPGQM
Trigger: CATTTGTCCTGGAATTGTCACGGTGCCTTGGTGTCAGCAGCAGTAACTTGGTGCCAAGGCCAAGAGAGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR TCA 72 bp AGGGACAGGAGACCTGGAGACAAGGGGCCAACGGAATaGTACCCTGATTCTTCATCTCAAAGATGGAACCTG +
Preference number: 3 (lower is better)
Translates to: RDRRPGDKGPTE*YPDSSSQRWNL
Trigger: CAGGTTCCATCTTTGAGATGAAGAATCAGGGTATCATTCCGTTGGCCCCTTGTCTCCAGGTCTCCTGTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 72 bp AGAAGCAAACTGCATGTTTCCAACTTCACCGACTTCTaGAGCACAGTGAGGTGGCAGGGCATTAGAGACCTG +
Preference number: 3 (lower is better)
Translates to: RSKLHVSNFTDF*STVRWQGIRDL
Trigger: CAGGTCTCTAATGCCCTGCCACCTCACTGTGCTGCAGAAGTCGGTGAAGTTGGAAACATGCAGTTTGCTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 72 bp TGCCAAGGACACGTGAGCTGCTGTACAGAAGCAAACTaGATGTTTCCAACTTCACCGACTTCTGCAGCACAG +
Preference number: 3 (lower is better)
Translates to: CQGHVSCCTEAN*MFPTSPTSAAQ
Trigger: CTGTGCTGCAGAAGTCGGTGAAGTTGGAAACATGCAGTTTGCTTCTGTACAGCAGCTCACGTGTCCTTGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp CACGCACACATCAGAACGAGCAGGTCTGAGAGGTGCTaGCAGCAGTTTGTCTCTCAGGTAAAACGTCTGAAA +
Preference number: 3 (lower is better)
Translates to: HAHIRTSRSERC*QQFVSQVKRLK
Trigger: TTTCAGACGTTTTACCTGAGAGACAAACTGCTGCCAGCACCTCTCAGACCTGCTCGTTCTGATGTGTGCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp TCCCAAAGCAGCAAAGGCCTCAGGGACCTTGAACAATaGCTCCCGGCCAGTCTCCTTAAATCACAACAGAAA +
Preference number: 3 (lower is better)
Translates to: SQSSKGLRDLEQ*LPASLLKSQQK
Trigger: TTTCTGTTGTGATTTAAGGAGACTGGCCGGGAGCCATTGTTCAAGGTCCCTGAGGCCTTTGCTGCTTTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 72 bp AAGCTCCAGAAACTGGTAAAAGACAAAGCTGGGCTCTaGCCAGCAGCTGGGTGGAAGGAGCTTCACATTACA +
Preference number: 3 (lower is better)
Translates to: KLQKLVKDKAGL*PAAGWKELHIT
Trigger: TGTAATGTGAAGCTCCTTCCACCCAGCTGCTGGTCAGAGCCCAGCTTTGTCTTTTACCAGTTTCTGGAGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR TCA 72 bp GGAAGAGGACCATACCTTGGCTTTGCCAAGGACACGTaGGCTGCTGTACAGAAGCAAACTGCATGTTTCCAA +
Preference number: 3 (lower is better)
Translates to: GRGPYLGFAKDT*AAVQKQTACFQ
Trigger: TTGGAAACATGCAGTTTGCTTCTGTACAGCAGCTCACGTGTCCTTGGCAAAGCCAAGGTATGGTCCTCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 72 bp GTAAAACGTCTGAAAAAGGAAAGGCATCTAGCACTTTaGTCCCTGGCCAATGGCTCTGAAGGGCTGGACAGT +
Preference number: 3 (lower is better)
Translates to: VKRLKKERHLAL*SLANGSEGLDS
Trigger: ACTGTCCAGCCCTTCAGAGCCATTGGCCAGGGAGCAAAGTGCTAGATGCCTTTCCTTTTTCAGACGTTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR-3UTR CAA 90 bp CTCAGAAAGAGAACAACCCAGCCTGAACACAGCCCCTTAACCCCATCATTACACCACTTGGGTTCCATTTaGTCTCTTCAGAGAACACTC +
Preference number: 3 (lower is better)
Translates to: LRKRTTQPEHSPLTPSLHHLGSI*SLQRTL
Trigger: GAGTGTTCTCTGAAGAGACAAAATGGAACCCAAGTG...GTGTAATGATGGGGTTAAGGGGCTGTGTTCAGGCTGGGTTGTTCTCTTTCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR GCA 72 bp CTGGCAGCCCTTAGGGTAGGTTTTAAGAAGACTCTCTaGTCAGTCTCTTGGCATTCTGCTGCACAAAAAGAA +
Preference number: 3 (lower is better)
Translates to: LAALRVGFKKTL*SVSWHSAAQKE
Trigger: TTCTTTTTGTGCAGCAGAATGCCAAGAGACTGAGCAGAGAGTCTTCTTAAAACCTACCCTAAGGGCTGCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CCA 72 bp TTTTGTCTCTTCAGAGAACACTCCAAACCCAGGGGATaGGTGAACACCTTTGCTAGAAGCATTCAGGCTGAA +
Preference number: 3 (lower is better)
Translates to: FCLFREHSKPRG*VNTFARSIQAE
Trigger: TTCAGCCTGAATGCTTCTAGCAAAGGTGTTCACCCATCCCCTGGGTTTGGAGTGTTCTCTGAAGAGACAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp GCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCCTTGTCCACGAGGCGGATaGGGGGCATGGTGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: AFSVAWQRSRKEAGNCRPCPRGG*GAWCCR
Trigger: GCGGCAGCACCATGCCCCTCATCCGCCTCGTGGACA...AGGACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp ACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTTGTCCACGAGGCGGATaGGGGGCATGGTGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: TGAIGAFPKAGWEVPGPCCPRGG*GAWCCR
Trigger: GCGGCAGCACCATGCCCCTCATCCGCCTCGTGGACA...ACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp TCAGGACAGCAGCAGCTGCCTGGCCCCAGACCTACCACGGGCACATGGACCTGGGTGTCAGCCGCCGTGTaGAGAAGGGGTTCAGGTACT +
Preference number: 4 (lower is better)
Translates to: SGQQQLPGPRPTTGTWTWVSAAV*RRGSGT
Trigger: AGTACCTGAACCCCTTCTTCACACGGCGGCTGACAC...CCAGGTCCATGTGCCCGTGGTAGGTCTGGGGCCAGGCAGCTGCTGCTGTCCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp TCGTGGGTGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCTGGTGGTGGTGCCGATaGGCTGACGCTTCTCCATGG +
Preference number: 4 (lower is better)
Translates to: SWVADSYWILFAPGAADLWWWCR*ADASPW
Trigger: CCATGGAGAAGCGTCAGCTCATCGGCACCACCACCA...GAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCACCCACGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp TGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCTACTACATGTCCACGAGGCGGATaGGGGGCATGGTGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: WQTATGSCLRQERLTSTTCPRGG*GAWCCR
Trigger: GCGGCAGCACCATGCCCCTCATCCGCCTCGTGGACA...TGTAGTAGAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR GCA 90 bp GTGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCTACTACTCCTCCTGCTGGGCCTaGTCTCCCGTCTGCACCGGA +
Preference number: 4 (lower is better)
Translates to: VADSYWILFAPGAADLYYSSCWA*SPVCTG
Trigger: TCCGGTGCAGACGGGAGAGCAGGCCCAGCAGGAGGA...GTAGTAGAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR GCA 90 bp ACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTTCCTCCTGCTGGGCCTaGTCTCCCGTCTGCACCGGA +
Preference number: 4 (lower is better)
Translates to: TGAIGAFPKAGWEVPGPCSSCWA*SPVCTG
Trigger: TCCGGTGCAGACGGGAGAGCAGGCCCAGCAGGAGGA...ACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp AGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGGCTGAGTGTCATGCCGCTCGACTaGTCCTCCTGCTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: RLVTAVLCGPSCVLRRLSVMPLD*SSCWAC
Trigger: GCAGGCCCAGCAGGAGGAGCAGTCGAGCGGCATGAC...ACTCAGCCTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp AGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCGTCATGCCGCTCGACTaGTCCTCCTGCTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: RLSLWPGREAGRRLVTAVVMPLD*SSCWAC
Trigger: GCAGGCCCAGCAGGAGGAGCAGTCGAGCGGCATGAC...GACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp CAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCGACTGCTCCTCCTGCTaGGCCTGCTCTCCCGTCTGC +
Preference number: 4 (lower is better)
Translates to: QAAFQGFLCGLAEKQEGGDCSSC*ACSPVC
Trigger: GCAGACGGGAGAGCAGGCCCAGCAGGAGGAGCAGTC...GCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGAAGGCTGCTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp AGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGGACTGCTCCTCCTGCTaGGCCTGCTCTCCCGTCTGC +
Preference number: 4 (lower is better)
Translates to: RKEAGNCRPLRAILCSEEDCSSC*ACSPVC
Trigger: GCAGACGGGAGAGCAGGCCCAGCAGGAGGAGCAGTC...CTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp GGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGGGCTGACGCTTCTCCATaGGCTCCAGGCCCAGGTGCA +
Preference number: 4 (lower is better)
Translates to: GRRLVTAVLCGPSCVLRRADASP*APGPGA
Trigger: TGCACCTGGGCCTGGAGCCCATGGAGAAGCGTCAGC...CCTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp GGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGCTGACGCTTCTCCATaGGCTCCAGGCCCAGGTGCA +
Preference number: 4 (lower is better)
Translates to: GAIGAFPKAGWEVPGPCRADASP*APGPGA
Trigger: TGCACCTGGGCCTGGAGCCCATGGAGAAGCGTCAGC...TCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp GGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGGTGGTGGTGGTGCCGATaGGCTGACGCTTCTCCATGG +
Preference number: 4 (lower is better)
Translates to: GRRLVTAVLCGPSCVLRRWWWCR*ADASPW
Trigger: CCATGGAGAAGCGTCAGCTCATCGGCACCACCACCA...CCTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CCCCAAGCTCAGACCCCAGGCCCTTCCCAAAGCAGCAAAGGCCTCAGGGACCTTGTGTCAGCCGCCGTGTaGAGAAGGGGTTCAGGTACT +
Preference number: 4 (lower is better)
Translates to: PQAQTPGPSQSSKGLRDLVSAAV*RRGSGT
Trigger: AGTACCTGAACCCCTTCTTCACACGGCGGCTGACAC...AAGGTCCCTGAGGCCTTTGCTGCTTTGGGAAGGGCCTGGGGTCTGAGCTTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp CATTGTGCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCATCATCCTCAGAGCCTaGCGGTCCCTGACGGACCTC +
Preference number: 4 (lower is better)
Translates to: HCAHRGHRSLPKSRLGSAIILRA*RSLTDL
Trigger: GAGGTCCGTCAGGGACCGTCAGGCTCTGAGGATGAT...GGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGCACAATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp TGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCTACTACATCCTCCTGCTGGGCCTaGTCTCCCGTCTGCACCGGA +
Preference number: 4 (lower is better)
Translates to: WQTATGSCLRQERLTSTTSSCWA*SPVCTG
Trigger: TCCGGTGCAGACGGGAGAGCAGGCCCAGCAGGAGGA...TGTAGTAGAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR GCA 90 bp TCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCTCGACTGCTCCTCCTaGTGGGCCTGCTCTCCCGTC +
Preference number: 4 (lower is better)
Translates to: SKAFSVAWQRSRKEAGNCLDCSS*WACSPV
Trigger: GACGGGAGAGCAGGCCCAGCAGGAGGAGCAGTCGAG...GCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp ACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTGCTGACGCTTCTCCATaGGCTCCAGGCCCAGGTGCA +
Preference number: 4 (lower is better)
Translates to: TGAIGAFPKAGWEVPGPCADASP*APGPGA
Trigger: TGCACCTGGGCCTGGAGCCCATGGAGAAGCGTCAGC...ACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp GCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCACACCCAAGGTGGTGTaGAGGGTGAAGTTGAAGGTC +
Preference number: 4 (lower is better)
Translates to: AHRGHRSLPKSRLGSARTTPKVV*RVKLKV
Trigger: GACCTTCAACTTCACCCTTCACACCACCTTGGGTGT...GGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp AGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGGCTGAGTATCATCCTCAGAGCCTaGCGGTCCCTGACGGACCTC +
Preference number: 4 (lower is better)
Translates to: RLVTAVLCGPSCVLRRLSIILRA*RSLTDL
Trigger: GAGGTCCGTCAGGGACCGTCAGGCTCTGAGGATGAT...ACTCAGCCTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp ACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGCTGCTCGACTGCTCCTCCTaGTGGGCCTGCTCTCCCGTC +
Preference number: 4 (lower is better)
Translates to: TPRHRDNSRTNGRCACQLLDCSS*WACSPV
Trigger: GACGGGAGAGCAGGCCCAGCAGGAGGAGCAGTCGAG...CAGCTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp GGGGCCTGTGACCACAGCACTGCAGGAAGCAAGTCACTGATCCCAAGACCTGGCTCAAGCCAGTCAGCGTaGCAAGTGCTGCGGAGCCAA +
Preference number: 4 (lower is better)
Translates to: GACDHSTAGSKSLIPRPGSSQSA*QVLRSQ
Trigger: TTGGCTCCGCAGCACTTGGCACGCTGACTGGCTTGA...GCCAGGTCTTGGGATCAGTGACTTGCTTCCTGCAGTGCTGTGGTCACAGGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR CCA 90 bp GCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCCGCAATAGTGGCGACTaGGTCGACTGCAGATATCAG +
Preference number: 4 (lower is better)
Translates to: AHRGHRSLPKSRLGSARTRNSGD*VDCRYQ
Trigger: CTGATATCTGCAGTCGACCCAGTCGCCACTATTGCG...GGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp GGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGACTAGGACGAGGAGGCTaGAGAAAATGGTCATGCCGC +
Preference number: 4 (lower is better)
Translates to: GAIGAFPKAGWEVPGPCRLGRGG*RKWSCR
Trigger: GCGGCATGACCATTTTCTTCAGCCTCCTCGTCCTAG...TCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCGCAGGTGCACCAGGATaGTGCAGATGGCTAGGACGA +
Preference number: 4 (lower is better)
Translates to: QAAFQGFLCGLAEKQEGGAGAPG*CRWLGR
Trigger: TCGTCCTAGCCATCTGCATCATCCTGGTGCACCTGC...GCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGAAGGCTGCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047815.13
CDS-3UTR TCA 90 bp TTCCTCCCACAGGCTCTCGCTGCCTCCTGTTCCTATGCGCGTTCAGTTAACAGTGTGGTGCCGATGAGCTaGCGCTTCTCCATGGGCTCC +
Preference number: 4 (lower is better)
Translates to: FLPQALAASCSYARSVNSVVPMS*RFSMGS
Trigger: GGAGCCCATGGAGAAGCGTCAGCTCATCGGCACCAC...ACTGTTAACTGAACGCGCATAGGAACAGGAGGCAGCGAGAGCCTGTGGGAGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp CCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGGTGGTGCCGATGAGCTaGCGCTTCTCCATGGGCTCC +
Preference number: 4 (lower is better)
Translates to: PSQKQAGKCQDHVEKVLQVVPMS*RFSMGS
Trigger: GGAGCCCATGGAGAAGCGTCAGCTCATCGGCACCAC...CTGAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp AGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCGTGGTGCCGATGAGCTaGCGCTTCTCCATGGGCTCC +
Preference number: 4 (lower is better)
Translates to: SLPKSRLGSARTMSRKSFVVPMS*RFSMGS
Trigger: GGAGCCCATGGAGAAGCGTCAGCTCATCGGCACCAC...GAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp TCTGTGTGCCCAGCTGGCCTGCCCCTTGGCCTAGACCTGAAATGCAACTGGGGCCGTACTCTTCTTCAGTaGGCTCTGACAGGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: SVCPAGLPLGLDLKCNWGRTLLQ*ALTGAL
Trigger: CAGAGCACCTGTCAGAGCTCACTGAAGAAGAGTACG...GCCCCAGTTGCATTTCAGGTCTAGGCCAAGGGGCAGGCCAGCTGGGCACACAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR GCA 90 bp GGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGGCGACTGGGTCGACTaGAGATATCAGGGAGCCAAA +
Preference number: 4 (lower is better)
Translates to: GAIGAFPKAGWEVPGPCRGDWVD*RYQGAK
Trigger: TTTGGCTCCCTGATATCTGCAGTCGACCCAGTCGCC...TCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp TCGTGGGTGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCGCCTGTGAGAACGTTTaGCACCCACTGACATCTGAC +
Preference number: 4 (lower is better)
Translates to: SWVADSYWILFAPGAADLACENV*HPLTSD
Trigger: GTCAGATGTCAGTGGGTGGCAAACGTTCTCACAGGC...GAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCACCCACGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR GCA 90 bp AGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGTCAAGCCAGTCAGCGTaGCAAGTGCTGCGGAGCCAA +
Preference number: 4 (lower is better)
Translates to: RKEAGNCRPLRAILCSEESSQSA*QVLRSQ
Trigger: TTGGCTCCGCAGCACTTGGCACGCTGACTGGCTTGA...CTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp TCTGTGTGCCCAGCTGGCCTGCCCCTTGGCCTAGACCTGAAATGCAACTGGGGCGTTCGGAGAGTCTGCTaGATGAGGATCTGGGTGACT +
Preference number: 4 (lower is better)
Translates to: SVCPAGLPLGLDLKCNWGVRRVC*MRIWVT
Trigger: AGTCACCCAGATCCTCATGCAGCAGACTCTCCGAAC...GCCCCAGTTGCATTTCAGGTCTAGGCCAAGGGGCAGGCCAGCTGGGCACACAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR CCA 90 bp GTGCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGATCTCATGGGTTGTGTTaGAGAACTCCTCCTCCGCCA +
Preference number: 4 (lower is better)
Translates to: VPTGAIGAFPKAGWEVPGSHGLC*RTPPPP
Trigger: TGGCGGAGGAGGAGTTCTCCAACACAACCCATGAGA...TCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp ATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTGACTGCTCCTCCTGCTaGGCCTGCTCTCCCGTCTGC +
Preference number: 4 (lower is better)
Translates to: IGAFPKAGWEVPGPCRESDCSSC*ACSPVC
Trigger: GCAGACGGGAGAGCAGGCCCAGCAGGAGGAGCAGTC...ACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp GTGCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACGCAATAGTGGCGACTaGGTCGACTGCAGATATCAG +
Preference number: 4 (lower is better)
Translates to: VPTGAIGAFPKAGWEVPGRNSGD*VDCRYQ
Trigger: CTGATATCTGCAGTCGACCCAGTCGCCACTATTGCG...TCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp GTGCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGAGAGGATCTGGGTGACTaGGGAGAGGTTATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: VPTGAIGAFPKAGWEVPGEDLGD*GEVMVC
Trigger: ACACACCATAACCTCTCCCCAGTCACCCAGATCCTC...TCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp AGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGCTAGGACGAGGAGGCTaGAGAAAATGGTCATGCCGC +
Preference number: 4 (lower is better)
Translates to: RKEAGNCRPLRAILCSEELGRGG*RKWSCR
Trigger: GCGGCATGACCATTTTCTTCAGCCTCCTCGTCCTAG...CTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp GGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGACAAACACCAGCATGTTaGGCACAGGGTCCACATGCA +
Preference number: 4 (lower is better)
Translates to: GAIGAFPKAGWEVPGPCRQTPAC*AQGPHA
Trigger: TGCATGTGGACCCTGTGCTCAACATGCTGGTGTTTG...TCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp TCAGGACAGCAGCAGCTGCCTGGCCCCAGACCTACCACGGGCACATGGACCTGGACGTTTGCCACCCACTaGCATCTGACATATGTTTTC +
Preference number: 4 (lower is better)
Translates to: SGQQQLPGPRPTTGTWTWTFATH*HLTYVF
Trigger: GAAAACATATGTCAGATGTCAGTGGGTGGCAAACGT...CCAGGTCCATGTGCCCGTGGTAGGTCTGGGGCCAGGCAGCTGCTGCTGTCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp GGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGACGTACTCTTCTTCAGTaGGCTCTGACAGGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: GAIGAFPKAGWEVPGPCRRTLLQ*ALTGAL
Trigger: CAGAGCACCTGTCAGAGCTCACTGAAGAAGAGTACG...TCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp GCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAGTGTCAGCCGCCGTGTaGAGAAGGGGTTCAGGTACT +
Preference number: 4 (lower is better)
Translates to: AIGAFPKAGWEVPGPCREVSAAV*RRGSGT
Trigger: AGTACCTGAACCCCTTCTTCACACGGCGGCTGACAC...TTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CTGACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGATCATCCTCAGAGCCTaGCGGTCCCTGACGGACCTC +
Preference number: 4 (lower is better)
Translates to: LTPRHRDNSRTNGRCACQIILRA*RSLTDL
Trigger: GAGGTCCGTCAGGGACCGTCAGGCTCTGAGGATGAT...CTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp AAAAGGGCAGGTGAGGACATCAGGCAACAACCATTGCTTGTGGTAGGATCCAGCGTCATGCCGCTCGACTaGTCCTCCTGCTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: KRAGEDIRQQPLLVVGSSVMPLD*SSCWAC
Trigger: GCAGGCCCAGCAGGAGGAGCAGTCGAGCGGCATGAC...GCTGGATCCTACCACAAGCAATGGTTGTTGCCTGATGTCCTCACCTGCCCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR CCA 90 bp CATTGTGCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCTCTCATGGGTTGTGTTaGAGAACTCCTCCTCCGCCA +
Preference number: 4 (lower is better)
Translates to: HCAHRGHRSLPKSRLGSASHGLC*RTPPPP
Trigger: TGGCGGAGGAGGAGTTCTCCAACACAACCCATGAGA...GGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGCACAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp ACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGCTGGTAGCCAAGGGCCTGTaGGAACGTTTGCCACCCACT +
Preference number: 4 (lower is better)
Translates to: TPRHRDNSRTNGRCACQLVAKGL*ERLPPT
Trigger: AGTGGGTGGCAAACGTTCTCACAGGCCCTTGGCTAC...CAGCTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp AGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGACAGAGGGAAGATGTTaGCGGCTCTGCCAAACAGGA +
Preference number: 4 (lower is better)
Translates to: RKEAGNCRPLRAILCSEETEGRC*RLCQTG
Trigger: TCCTGTTTGGCAGAGCCGTCAACATCTTCCCTCTGT...CTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCACAGAGGGAAGATGTTaGCGGCTCTGCCAAACAGGA +
Preference number: 4 (lower is better)
Translates to: PRLSLWPGREAGRRLVTATEGRC*RLCQTG
Trigger: TCCTGTTTGGCAGAGCCGTCAACATCTTCCCTCTGT...GGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp AGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGCGTACTCTTCTTCAGTaGGCTCTGACAGGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: RKEAGNCRPLRAILCSEERTLLQ*ALTGAL
Trigger: CAGAGCACCTGTCAGAGCTCACTGAAGAAGAGTACG...CTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp GCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCTTATTACTGCTCCCATaGGAATACCTAGGACGAGGA +
Preference number: 4 (lower is better)
Translates to: AHRGHRSLPKSRLGSARTLLLLP*EYLGRG
Trigger: TCCTCGTCCTAGGTATTCTCATGGGAGCAGTAATAA...GGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp TCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCGGCGACTGGGTCGACTaGAGATATCAGGGAGCCAAA +
Preference number: 4 (lower is better)
Translates to: SKAFSVAWQRSRKEAGNCGDWVD*RYQGAK
Trigger: TTTGGCTCCCTGATATCTGCAGTCGACCCAGTCGCC...GCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp ACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTGCCTGTGAGAACGTTTaGCACCCACTGACATCTGAC +
Preference number: 4 (lower is better)
Translates to: TGAIGAFPKAGWEVPGPCACENV*HPLTSD
Trigger: GTCAGATGTCAGTGGGTGGCAAACGTTCTCACAGGC...ACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp ACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGCTGTCAAGCCAGTCAGCGTaGCAAGTGCTGCGGAGCCAA +
Preference number: 4 (lower is better)
Translates to: TPRHRDNSRTNGRCACQLSSQSA*QVLRSQ
Trigger: TTGGCTCCGCAGCACTTGGCACGCTGACTGGCTTGA...CAGCTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp CAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCACAGTTCGGAGAGTCTaGTGCATGAGGATCTGGGTG +
Preference number: 4 (lower is better)
Translates to: QAAFQGFLCGLAEKQEGGTVRRV*CMRIWV
Trigger: CACCCAGATCCTCATGCAGCAGACTCTCCGAACTGT...GCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGAAGGCTGCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp CCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCTCTCATGGGTTGTGTTaGAGAACTCCTCCTCCGCCA +
Preference number: 4 (lower is better)
Translates to: PRLSLWPGREAGRRLVTASHGLC*RTPPPP
Trigger: TGGCGGAGGAGGAGTTCTCCAACACAACCCATGAGA...GGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp GCCCAGGCATGGTGTGAGATGAGCAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCCGCAATAGTGGCGACTaGGTCGACTGCAGATATCAG +
Preference number: 4 (lower is better)
Translates to: AQAWCEMSKQPSKAFSVARNSGD*VDCRYQ
Trigger: CTGATATCTGCAGTCGACCCAGTCGCCACTATTGCG...GGCCACAGAGAAAGCCTTGGAAGGCTGCTTGCTCATCTCACACCATGCCTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp CAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCGAGGATCTGGGTGACTaGGGAGAGGTTATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: QAAFQGFLCGLAEKQEGGEDLGD*GEVMVC
Trigger: ACACACCATAACCTCTCCCCAGTCACCCAGATCCTC...GCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGAAGGCTGCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp GCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCCTTGCTGCATGAGGATCTaGGTGACTGGGGAGAGGTTA +
Preference number: 4 (lower is better)
Translates to: AFSVAWQRSRKEAGNCRPCCMRI*VTGERL
Trigger: TAACCTCTCCCCAGTCACCCAGATCCTCATGCAGCA...AGGACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR CAA 72 bp CAGGCCCTTCCCAAAGCAGCAAAGGCCTCAGGGACCTaGAACAATGGCTCCCGGCCAGTCTCCTTAAATCAC +
Preference number: 4 (lower is better)
Translates to: QALPKAAKASGT*NNGSRPVSLNH
Trigger: GTGATTTAAGGAGACTGGCCGGGAGCCATTGTTCAAGGTCCCTGAGGCCTTTGCTGCTTTGGGAAGGGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp GTGCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGAACATCATCTTGGGGGTaGTTTTGTGATCTCGGAAGA +
Preference number: 4 (lower is better)
Translates to: VPTGAIGAFPKAGWEVPGTSSWG*FCDLGR
Trigger: TCTTCCGAGATCACAAAATCACCCCCAAGATGATGT...TCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp GTGCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGATTATTACTGCTCCCATaGGAATACCTAGGACGAGGA +
Preference number: 4 (lower is better)
Translates to: VPTGAIGAFPKAGWEVPGLLLLP*EYLGRG
Trigger: TCCTCGTCCTAGGTATTCTCATGGGAGCAGTAATAA...TCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGTGGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp GGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGGGAGGACGATGGAGACTaGATCGTTGAGAATGCTTTC +
Preference number: 4 (lower is better)
Translates to: GRRLVTAVLCGPSCVLRREDDGD*IVENAF
Trigger: GAAAGCATTCTCAACGATGCAGTCTCCATCGTCCTC...CCTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp AGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGCAGCGTGCCAAGTGCTaGGGAGCCAAAGAACATTTT +
Preference number: 4 (lower is better)
Translates to: RKEAGNCRPLRAILCSEEQRAKC*GAKEHF
Trigger: AAAATGTTCTTTGGCTCCGCAGCACTTGGCACGCTG...CTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp GCCCAGGCATGGTGTGAGATGAGCAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCCAGCGTGCCAAGTGCTaGGGAGCCAAAGAACATTTT +
Preference number: 4 (lower is better)
Translates to: AQAWCEMSKQPSKAFSVAQRAKC*GAKEHF
Trigger: AAAATGTTCTTTGGCTCCGCAGCACTTGGCACGCTG...GGCCACAGAGAAAGCCTTGGAAGGCTGCTTGCTCATCTCACACCATGCCTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp CAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCCAGCGTGCCAAGTGCTaGGGAGCCAAAGAACATTTT +
Preference number: 4 (lower is better)
Translates to: QAAFQGFLCGLAEKQEGGQRAKC*GAKEHF
Trigger: AAAATGTTCTTTGGCTCCGCAGCACTTGGCACGCTG...GCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGAAGGCTGCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGACACCCAAGGTGGTGTaGAGGGTGAAGTTGAAGGTC +
Preference number: 4 (lower is better)
Translates to: PSQKQAGKCQDHVEKVLQTPKVV*RVKLKV
Trigger: GACCTTCAACTTCACCCTTCACACCACCTTGGGTGT...CTGAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGCAAACACCAGCATGTTaGGCACAGGGTCCACATGCA +
Preference number: 4 (lower is better)
Translates to: PSQKQAGKCQDHVEKVLQQTPAC*AQGPHA
Trigger: TGCATGTGGACCCTGTGCTCAACATGCTGGTGTTTG...CTGAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp GATGGAGAAGCAGGGTCACTAGAAGGCCCTTCCTCCCACAGGCTCTCGCTGCCTACGTTTGCCACCCACTaGCATCTGACATATGTTTTC +
Preference number: 4 (lower is better)
Translates to: DGEAGSLEGPSSHRLSLPTFATH*HLTYVF
Trigger: GAAAACATATGTCAGATGTCAGTGGGTGGCAAACGT...AGGCAGCGAGAGCCTGTGGGAGGAAGGGCCTTCTAGTGACCCTGCTTCTCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp ACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTAGCCAAAGAACATTTTaGGGAAGTAGCCAAGGGCCT +
Preference number: 4 (lower is better)
Translates to: TGAIGAFPKAGWEVPGPCSQRTF*GSSQGP
Trigger: AGGCCCTTGGCTACTTCCTCAAAATGTTCTTTGGCT...ACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp ACAGGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTAAAACAGGATCGCCATaGTGCCTGAGAGTGAGATTC +
Preference number: 4 (lower is better)
Translates to: TGAIGAFPKAGWEVPGPCKTGSP*CLRVRF
Trigger: GAATCTCACTCTCAGGCATCATGGCGATCCTGTTTT...ACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp AGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGAAAACAGGATCGCCATaGTGCCTGAGAGTGAGATTC +
Preference number: 4 (lower is better)
Translates to: RKEAGNCRPLRAILCSEEKTGSP*CLRVRF
Trigger: GAATCTCACTCTCAGGCATCATGGCGATCCTGTTTT...CTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp TCGTGGGTGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCATGGTGTGTATAGTGTaGCATCACGATGCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: SWVADSYWILFAPGAADLMVCIV*HHDARK
Trigger: TTTTCTGGCATCGTGATGTCACACTATACACACCAT...GAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCACCCACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp ACACAAGGCCACAAAGTGAGCGGCTCCAGTTCCAGGGCTAAGGTGAGAGACAAGACAGAGGGAAGATGTTaGCGGCTCTGCCAAACAGGA +
Preference number: 4 (lower is better)
Translates to: TQGHKVSGSSSRAKVRDKTEGRC*RLCQTG
Trigger: TCCTGTTTGGCAGAGCCGTCAACATCTTCCCTCTGT...CTTGTCTCTCACCTTAGCCCTGGAACTGGAGCCGCTCACTTTGTGGCCTTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp CAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTTGGGGGTGATTTTGTaGTCTCGGAAGAAGTTCAGC +
Preference number: 4 (lower is better)
Translates to: QAAFQGFLCGLAEKQEGGLGVIL*SRKKFS
Trigger: GCTGAACTTCTTCCGAGATCACAAAATCACCCCCAA...GCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGAAGGCTGCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp AGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGTTGGGGGTGATTTTGTaGTCTCGGAAGAAGTTCAGC +
Preference number: 4 (lower is better)
Translates to: RKEAGNCRPLRAILCSEELGVIL*SRKKFS
Trigger: GCTGAACTTCTTCCGAGATCACAAAATCACCCCCAA...CTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCCATACCACTTATTGGTaGGGCTCTTCATCTGGATGC +
Preference number: 4 (lower is better)
Translates to: PRLSLWPGREAGRRLVTAHTTYW*GSSSGC
Trigger: GCATCCAGATGAAGAGCCTCACCAATAAGTGGTATG...GGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp ATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTGGCGACTGGGTCGACTaGAGATATCAGGGAGCCAAA +
Preference number: 4 (lower is better)
Translates to: IGAFPKAGWEVPGPCRESGDWVD*RYQGAK
Trigger: TTTGGCTCCCTGATATCTGCAGTCGACCCAGTCGCC...ACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp CCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGGTTCGGAGAGTCTGCTaGATGAGGATCTGGGTGACT +
Preference number: 4 (lower is better)
Translates to: PSQKQAGKCQDHVEKVLQVRRVC*MRIWVT
Trigger: AGTCACCCAGATCCTCATGCAGCAGACTCTCCGAAC...CTGAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp ACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGCTGACAGTTCGGAGAGTCTaGTGCATGAGGATCTGGGTG +
Preference number: 4 (lower is better)
Translates to: TPRHRDNSRTNGRCACQLTVRRV*CMRIWV
Trigger: CACCCAGATCCTCATGCAGCAGACTCTCCGAACTGT...CAGCTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
3UTR CAA 72 bp CGTAAAAGGGCAGGTGAGGACATCAGGCAACAACCATaGCTTGTGGTAGGATCCAGCCCCTTATCCTGCGAC +
Preference number: 4 (lower is better)
Translates to: RKRAGEDIRQQP*LVVGSSPLSCD
Trigger: GTCGCAGGATAAGGGGCTGGATCCTACCACAAGCAATGGTTGTTGCCTGATGTCCTCACCTGCCCTTTTACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp ATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTACACCCAAGGTGGTGTaGAGGGTGAAGTTGAAGGTC +
Preference number: 4 (lower is better)
Translates to: IGAFPKAGWEVPGPCRESTPKVV*RVKLKV
Trigger: GACCTTCAACTTCACCCTTCACACCACCTTGGGTGT...ACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp AGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGTGGAGACTGCATCGTTaGGAATGCTTTCTCCAAACA +
Preference number: 4 (lower is better)
Translates to: RKEAGNCRPLRAILCSEEWRLHR*ECFLQT
Trigger: TGTTTGGAGAAAGCATTCTCAACGATGCAGTCTCCA...CTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCACGTTTGCCACCCACTaGCATCTGACATATGTTTTC +
Preference number: 4 (lower is better)
Translates to: QAAFQGFLCGLAEKQEGGTFATH*HLTYVF
Trigger: GAAAACATATGTCAGATGTCAGTGGGTGGCAAACGT...GCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGAAGGCTGCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CTCAGAAAGAGAACAACCCAGCCTGAACACAGCCCCTTAACCCCATCATTACACGTAGCCAAGGGCCTGTaGGAACGTTTGCCACCCACT +
Preference number: 4 (lower is better)
Translates to: LRKRTTQPEHSPLTPSLHVAKGL*ERLPPT
Trigger: AGTGGGTGGCAAACGTTCTCACAGGCCCTTGGCTAC...GTGTAATGATGGGGTTAAGGGGCTGTGTTCAGGCTGGGTTGTTCTCTTTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp GCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGCCAAAGAACATTTTaGGGAAGTAGCCAAGGGCCT +
Preference number: 4 (lower is better)
Translates to: AIGAFPKAGWEVPGPCRESQRTF*GSSQGP
Trigger: AGGCCCTTGGCTACTTCCTCAAAATGTTCTTTGGCT...TTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp GGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAATGGTGTGTATAGTGTaGCATCACGATGCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: GAIGAFPKAGWEVPGPCRMVCIV*HHDARK
Trigger: TTTTCTGGCATCGTGATGTCACACTATACACACCAT...TCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CATCAGTGTAAACATTTTCATTGTGCCCACAGGGGCCATAGGAGCCTTCCCAAATGGTGGTGGTGCCGATaGGCTGACGCTTCTCCATGG +
Preference number: 4 (lower is better)
Translates to: HQCKHFHCAHRGHRSLPKWWWCR*ADASPW
Trigger: CCATGGAGAAGCGTCAGCTCATCGGCACCACCACCA...TTTGGGAAGGCTCCTATGGCCCCTGTGGGCACAATGAAAATGTTTACACTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR GCA 90 bp CTGACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGTACCGAATCAGCAGGTaGACCAGGATGATGCAGATG +
Preference number: 4 (lower is better)
Translates to: LTPRHRDNSRTNGRCACQYRISR*TRMMQM
Trigger: CATCTGCATCATCCTGGTGCACCTGCTGATTCGGTA...CTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047815.13
CDS-3UTR GCA 90 bp AGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCAGGGTCCACATGCAGTaGGTTGAAAATCGCAATAGT +
Preference number: 4 (lower is better)
Translates to: RLSLWPGREAGRRLVTAVRVHMQ*VENRNS
Trigger: ACTATTGCGATTTTCAACGCACTGCATGTGGACCCT...GACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp CAGAGCTGGTGCTCAGTGAAGCTGGTGTGCAGAGCTAACATTCTCACCAAGCTCACAGTTCGGAGAGTCTaGTGCATGAGGATCTGGGTG +
Preference number: 4 (lower is better)
Translates to: QSWCSVKLVCRANILTKLTVRRV*CMRIWV
Trigger: CACCCAGATCCTCATGCAGCAGACTCTCCGAACTGT...GAGCTTGGTGAGAATGTTAGCTCTGCACACCAGCTTCACTGAGCACCAGCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR GCA 90 bp CCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGGAGAGGCCAAGAAATaGAAACACACACGTTTCACA +
Preference number: 4 (lower is better)
Translates to: PRLSLWPGREAGRRLVTAGEAKK*KHTRFT
Trigger: TGTGAAACGTGTGTGTTTGCATTTCTTGGCCTCTCC...GGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp CAGAGCTGGTGCTCAGTGAAGCTGGTGTGCAGAGCTAACATTCTCACCAAGCTCTGCTGCATGAGGATCTaGGTGACTGGGGAGAGGTTA +
Preference number: 4 (lower is better)
Translates to: QSWCSVKLVCRANILTKLCCMRI*VTGERL
Trigger: TAACCTCTCCCCAGTCACCCAGATCCTCATGCAGCA...GAGCTTGGTGAGAATGTTAGCTCTGCACACCAGCTTCACTGAGCACCAGCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CAA 72 bp AGGGCTAAGGTGAGAGACAAGGAAGAGGACCATACCTaGGCTTTGCCAAGGACACGTGAGCTGCTGTACAGA +
Preference number: 4 (lower is better)
Translates to: RAKVRDKEEDHT*ALPRTRELLYR
Trigger: TCTGTACAGCAGCTCACGTGTCCTTGGCAAAGCCAAGGTATGGTCCTCTTCCTTGTCTCTCACCTTAGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CAA 72 bp ACTGCAGGAAGCAAGTCACTGATCCCAAGACCTGGCTaGGAAATAGTGCAGGGATGGACCACCAGCAAGTAC +
Preference number: 4 (lower is better)
Translates to: TAGSKSLIPRPG*EIVQGWTTSKY
Trigger: GTACTTGCTGGTGGTCCATCCCTGCACTATTTCCAAGCCAGGTCTTGGGATCAGTGACTTGCTTCCTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp CATCAGTGTAAACATTTTCATTGTGCCCACAGGGGCCATAGGAGCCTTCCCAAAGTAGCCAAGGGCCTGTaGGAACGTTTGCCACCCACT +
Preference number: 4 (lower is better)
Translates to: HQCKHFHCAHRGHRSLPKVAKGL*ERLPPT
Trigger: AGTGGGTGGCAAACGTTCTCACAGGCCCTTGGCTAC...TTTGGGAAGGCTCCTATGGCCCCTGTGGGCACAATGAAAATGTTTACACTGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp TTCCTCCCACAGGCTCTCGCTGCCTCCTGTTCCTATGCGCGTTCAGTTAACAGTAAAACAGGATCGCCATaGTGCCTGAGAGTGAGATTC +
Preference number: 4 (lower is better)
Translates to: FLPQALAASCSYARSVNSKTGSP*CLRVRF
Trigger: GAATCTCACTCTCAGGCATCATGGCGATCCTGTTTT...ACTGTTAACTGAACGCGCATAGGAACAGGAGGCAGCGAGAGCCTGTGGGAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp GCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCCTATGGTGTGTATAGTGTaGCATCACGATGCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: AFSVAWQRSRKEAGNCRPMVCIV*HHDARK
Trigger: TTTTCTGGCATCGTGATGTCACACTATACACACCAT...AGGACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp GATGGAGAAGCAGGGTCACTAGAAGGCCCTTCCTCCCACAGGCTCTCGCTGCCTGCACTATGCACCAGATaGCAAAGGAAATTTCAAACT +
Preference number: 4 (lower is better)
Translates to: DGEAGSLEGPSSHRLSLPALCTR*QRKFQT
Trigger: AGTTTGAAATTTCCTTTGTCATCTGGTGCATAGTGC...AGGCAGCGAGAGCCTGTGGGAGGAAGGGCCTTCTAGTGACCCTGCTTCTCCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp CTGACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGCATACCACTTATTGGTaGGGCTCTTCATCTGGATGC +
Preference number: 4 (lower is better)
Translates to: LTPRHRDNSRTNGRCACQHTTYW*GSSSGC
Trigger: GCATCCAGATGAAGAGCCTCACCAATAAGTGGTATG...CTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGCATACCACTTATTGGTaGGGCTCTTCATCTGGATGC +
Preference number: 4 (lower is better)
Translates to: PSQKQAGKCQDHVEKVLQHTTYW*GSSSGC
Trigger: GCATCCAGATGAAGAGCCTCACCAATAAGTGGTATG...CTGAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp AGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCTATCAGGGAGCCAAATaGGAAACTGTCTGTCATGTT +
Preference number: 4 (lower is better)
Translates to: RLSLWPGREAGRRLVTAVYQGAK*ETVCHV
Trigger: AACATGACAGACAGTTTCGCATTTGGCTCCCTGATA...GACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp TGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCTACTACAAGGGTCCACATGCAGTaGGTTGAAAATCGCAATAGT +
Preference number: 4 (lower is better)
Translates to: WQTATGSCLRQERLTSTTRVHMQ*VENRNS
Trigger: ACTATTGCGATTTTCAACGCACTGCATGTGGACCCT...TGTAGTAGAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR CCA 90 bp TGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCTACTACAAAGTTGAAGGTCTCATaGGTTGTGTTGGAGAACTCC +
Preference number: 4 (lower is better)
Translates to: WQTATGSCLRQERLTSTTKLKVS*VVLENS
Trigger: GGAGTTCTCCAACACAACCCATGAGACCTTCAACTT...TGTAGTAGAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR CCA 90 bp GCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCCTTTCTGCCAGCCCATATaGCAGGTAAGCAAAAATGAT +
Preference number: 4 (lower is better)
Translates to: AFSVAWQRSRKEAGNCRPFCQPI*QVSKND
Trigger: ATCATTTTTGCTTACCTGCCATATGGGCTGGCAGAA...AGGACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp GCTAAAGTGCCAGGTACCCAAGGGCACCCATGTCCCTCCCTACTCTTAAGTATATGCTGCATGAGGATCTaGGTGACTGGGGAGAGGTTA +
Preference number: 4 (lower is better)
Translates to: AKVPGTQGHPCPSLLLSICCMRI*VTGERL
Trigger: TAACCTCTCCCCAGTCACCCAGATCCTCATGCAGCA...TATACTTAAGAGTAGGGAGGGACATGGGTGCCCTTGGGTACCTGGCACTTTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp ACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGCTGTGGAGACTGCATCGTTaGGAATGCTTTCTCCAAACA +
Preference number: 4 (lower is better)
Translates to: TPRHRDNSRTNGRCACQLWRLHR*ECFLQT
Trigger: TGTTTGGAGAAAGCATTCTCAACGATGCAGTCTCCA...CAGCTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCGCACTATGCACCAGATaGCAAAGGAAATTTCAAACT +
Preference number: 4 (lower is better)
Translates to: QAAFQGFLCGLAEKQEGGALCTR*QRKFQT
Trigger: AGTTTGAAATTTCCTTTGTCATCTGGTGCATAGTGC...GCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGAAGGCTGCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CTGACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGACATCATCTTGGGGGTaGTTTTGTGATCTCGGAAGA +
Preference number: 4 (lower is better)
Translates to: LTPRHRDNSRTNGRCACQTSSWG*FCDLGR
Trigger: TCTTCCGAGATCACAAAATCACCCCCAAGATGATGT...CTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR GCA 90 bp CCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGGGAGAGGCCAAGAAATaGAAACACACACGTTTCACA +
Preference number: 4 (lower is better)
Translates to: PSQKQAGKCQDHVEKVLQGEAKK*KHTRFT
Trigger: TGTGAAACGTGTGTGTTTGCATTTCTTGGCCTCTCC...CTGAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp CTGACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGAAGTTGAAGGTCTCATaGGTTGTGTTGGAGAACTCC +
Preference number: 4 (lower is better)
Translates to: LTPRHRDNSRTNGRCACQKLKVS*VVLENS
Trigger: GGAGTTCTCCAACACAACCCATGAGACCTTCAACTT...CTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp GCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAATTCTGCCAGCCCATATaGCAGGTAAGCAAAAATGAT +
Preference number: 4 (lower is better)
Translates to: AIGAFPKAGWEVPGPCREFCQPI*QVSKND
Trigger: ATCATTTTTGCTTACCTGCCATATGGGCTGGCAGAA...TTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CCA 90 bp TCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCTTCTGCCAGCCCATATaGCAGGTAAGCAAAAATGAT +
Preference number: 4 (lower is better)
Translates to: SKAFSVAWQRSRKEAGNCFCQPI*QVSKND
Trigger: ATCATTTTTGCTTACCTGCCATATGGGCTGGCAGAA...GCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR TCA 90 bp CAACTCTACCACTCACCAGCCTGTGCTGCCATGGCTCTAAAACAGGGCCACAGCTTATTACTGCTCCCATaGGAATACCTAGAGAAACCA +
Preference number: 4 (lower is better)
Translates to: QLYHSPACAAMALKQGHSLLLLP*EYLEKP
Trigger: TGGTTTCTCTAGGTATTCTCATGGGAGCAGTAATAA...GCTGTGGCCCTGTTTTAGAGCCATGGCAGCACAGGCTGGTGAGTGGTAGAGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047815.13
CDS-3UTR GCA 90 bp CTGGGCTCTGACCAGCAGCTGGGTGGAAGGAGCTTCACATTACAGGGTCTAGAATATCAGGGAGCCAAATaGGAAACTGTCTGTCATGTT +
Preference number: 4 (lower is better)
Translates to: LGSDQQLGGRSFTLQGLEYQGAK*ETVCHV
Trigger: AACATGACAGACAGTTTCGCATTTGGCTCCCTGATA...TTCTAGACCCTGTAATGTGAAGCTCCTTCCACCCAGCTGCTGGTCAGAGCCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR GCA 90 bp GCTAAAGTGCCAGGTACCCAAGGGCACCCATGTCCCTCCCTACTCTTAAGTATAGAGGACGATGGAGACTaGATCGTTGAGAATGCTTTC +
Preference number: 4 (lower is better)
Translates to: AKVPGTQGHPCPSLLLSIEDDGD*IVENAF
Trigger: GAAAGCATTCTCAACGATGCAGTCTCCATCGTCCTC...TATACTTAAGAGTAGGGAGGGACATGGGTGCCCTTGGGTACCTGGCACTTTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR CCA 90 bp CATCAGTGTAAACATTTTCATTGTGCCCACAGGGGCCATAGGAGCCTTCCCAAAGAGGATCTGGGTGACTaGGGAGAGGTTATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: HQCKHFHCAHRGHRSLPKEDLGD*GEVMVC
Trigger: ACACACCATAACCTCTCCCCAGTCACCCAGATCCTC...TTTGGGAAGGCTCCTATGGCCCCTGTGGGCACAATGAAAATGTTTACACTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CAA 72 bp AAGGTGAGAGACAAGGAAGAGGACCATACCTTGGCTTaGCCAAGGACACGTGAGCTGCTGTACAGAAGCAAA +
Preference number: 4 (lower is better)
Translates to: KVRDKEEDHTLA*PRTRELLYRSK
Trigger: TTTGCTTCTGTACAGCAGCTCACGTGTCCTTGGCAAAGCCAAGGTATGGTCCTCTTCCTTGTCTCTCACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp TCAGAGAAGAAAGAAACCCAGGCTTGTGAAGAGAGCCTTCAGTACAACTCTACCCAAACACCAGCATGTTaGGCACAGGGTCCACATGCA +
Preference number: 4 (lower is better)
Translates to: SEKKETQACEESLQYNSTQTPAC*AQGPHA
Trigger: TGCATGTGGACCCTGTGCTCAACATGCTGGTGTTTG...GGTAGAGTTGTACTGAAGGCTCTCTTCACAAGCCTGGGTTTCTTTCTTCTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp GCTAAAGTGCCAGGTACCCAAGGGCACCCATGTCCCTCCCTACTCTTAAGTATATGGAGACTGCATCGTTaGGAATGCTTTCTCCAAACA +
Preference number: 4 (lower is better)
Translates to: AKVPGTQGHPCPSLLLSIWRLHR*ECFLQT
Trigger: TGTTTGGAGAAAGCATTCTCAACGATGCAGTCTCCA...TATACTTAAGAGTAGGGAGGGACATGGGTGCCCTTGGGTACCTGGCACTTTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR GCA 90 bp CATGTTTCCAACTTCACCGACTTCTGCAGCACAGTGAGGTGGCAGGGCATTAGAAGGGTCCACATGCAGTaGGTTGAAAATCGCAATAGT +
Preference number: 4 (lower is better)
Translates to: HVSNFTDFCSTVRWQGIRRVHMQ*VENRNS
Trigger: ACTATTGCGATTTTCAACGCACTGCATGTGGACCCT...TCTAATGCCCTGCCACCTCACTGTGCTGCAGAAGTCGGTGAAGTTGGAAACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR GCA 90 bp AGGGGACGTGGAGGTGACTCCCACACTTGGGTTCCATTTTGTCTCTTCAGAGAAGGAGAGGCCAAGAAATaGAAACACACACGTTTCACA +
Preference number: 4 (lower is better)
Translates to: RGRGGDSHTWVPFCLFREGEAKK*KHTRFT
Trigger: TGTGAAACGTGTGTGTTTGCATTTCTTGGCCTCTCC...TTCTCTGAAGAGACAAAATGGAACCCAAGTGTGGGAGTCACCTCCACGTCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
3UTR CAA 72 bp GTACCTGAGGTTAGAAACACCTGCATCAAGGCCTACTaGGTCCCCATTGTGAGTCAGGGCCATATACAACTA +
Preference number: 4 (lower is better)
Translates to: VPEVRNTCIKAY*VPIVSQGHIQL
Trigger: TAGTTGTATATGGCCCTGACTCACAATGGGGACCAAGTAGGCCTTGATGCAGGTGTTTCTAACCTCAGGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp CATCAGTGTAAACATTTTCATTGTGCCCACAGGGGCCATAGGAGCCTTCCCAAAAGCCAAAGAACATTTTaGGGAAGTAGCCAAGGGCCT +
Preference number: 4 (lower is better)
Translates to: HQCKHFHCAHRGHRSLPKSQRTF*GSSQGP
Trigger: AGGCCCTTGGCTACTTCCTCAAAATGTTCTTTGGCT...TTTGGGAAGGCTCCTATGGCCCCTGTGGGCACAATGAAAATGTTTACACTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp CAGAGCTGGTGCTCAGTGAAGCTGGTGTGCAGAGCTAACATTCTCACCAAGCTCGCACTATGCACCAGATaGCAAAGGAAATTTCAAACT +
Preference number: 4 (lower is better)
Translates to: QSWCSVKLVCRANILTKLALCTR*QRKFQT
Trigger: AGTTTGAAATTTCCTTTGTCATCTGGTGCATAGTGC...GAGCTTGGTGAGAATGTTAGCTCTGCACACCAGCTTCACTGAGCACCAGCTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR GCA 90 bp AGGGGACGTGGAGGTGACTCCCACACTTGGGTTCCATTTTGTCTCTTCAGAGAATATCAGGGAGCCAAATaGGAAACTGTCTGTCATGTT +
Preference number: 4 (lower is better)
Translates to: RGRGGDSHTWVPFCLFREYQGAK*ETVCHV
Trigger: AACATGACAGACAGTTTCGCATTTGGCTCCCTGATA...TTCTCTGAAGAGACAAAATGGAACCCAAGTGTGGGAGTCACCTCCACGTCCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR TCA 90 bp CATCAGTGTAAACATTTTCATTGTGCCCACAGGGGCCATAGGAGCCTTCCCAAAACATCATCTTGGGGGTaGTTTTGTGATCTCGGAAGA +
Preference number: 4 (lower is better)
Translates to: HQCKHFHCAHRGHRSLPKTSSWG*FCDLGR
Trigger: TCTTCCGAGATCACAAAATCACCCCCAAGATGATGT...TTTGGGAAGGCTCCTATGGCCCCTGTGGGCACAATGAAAATGTTTACACTGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS GCA 90 bp CTGAAGAAAATGGTCATGCCGCTCGACTGCTCCTCCTGCTGGGCCTaGTCTCCCGTCTGCACCGGAAGGATAGGCTTGGCAGGTGTCGGC +
Preference number: 5 (lower is better)
Translates to: LKKMVMPLDCSSCWA*SPVCTGRIGLAGVG
Trigger: GCCGACACCTGCCAAGCCTATCCTTCCGGTGCAGACGGGAGAGCAGGCCCAGCAGGAGGAGCAGTCGAGCGGCATGACCATTTTCTTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS GCA 90 bp ACGAGGAGGCTGAAGAAAATGGTCATGCCGCTCGACTGCTCCTCCTaGTGGGCCTGCTCTCCCGTCTGCACCGGAAGGATAGGCTTGGCA +
Preference number: 5 (lower is better)
Translates to: TRRLKKMVMPLDCSS*WACSPVCTGRIGLA
Trigger: TGCCAAGCCTATCCTTCCGGTGCAGACGGGAGAGCAGGCCCAGCAGGAGGAGCAGTCGAGCGGCATGACCATTTTCTTCAGCCTCCTCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp TCGTGGGTGGCAGACAGCTACTGGATCCTGTTTGCGCCAGGAGCGGCTGACCTCGACAGAGGGAAGATGTaGACGGCTCTGCCAAACAGG +
Preference number: 5 (lower is better)
Translates to: SWVADSYWILFAPGAADLDRGKM*TALPNR
Trigger: CCTGTTTGGCAGAGCCGTCAACATCTTCCCTCTGTC...GAGGTCAGCCGCTCCTGGCGCAAACAGGATCCAGTAGCTGTCTGCCACCCACGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR CAA 90 bp GAGGCAGAGGCACCTCCTGGTGCTCAGCAGAGCTGGTGCTCAGTGAAGCTGGTGAAGGGGTTCAGGTACTaGGCATCCAGCCACATGAAG +
Preference number: 5 (lower is better)
Translates to: EAEAPPGAQQSWCSVKLVKGFRY*ASSHMK
Trigger: CTTCATGTGGCTGGATGCCAAGTACCTGAACCCCTT...CACCAGCTTCACTGAGCACCAGCTCTGCTGAGCACCAGGAGGTGCCTCTGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR CAA 90 bp TCTGTGTGCCCAGCTGGCCTGCCCCTTGGCCTAGACCTGAAATGCAACTGGGGCTCCACATGCAGTGCGTaGAAAATCGCAATAGTGGCG +
Preference number: 5 (lower is better)
Translates to: SVCPAGLPLGLDLKCNWGSTCSA*KIAIVA
Trigger: CGCCACTATTGCGATTTTCAACGCACTGCATGTGGA...GCCCCAGTTGCATTTCAGGTCTAGGCCAAGGGGCAGGCCAGCTGGGCACACAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR CAA 90 bp AGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGCCAAACACCAGCATGTaGAGCACAGGGTCCACATGC +
Preference number: 5 (lower is better)
Translates to: RKEAGNCRPLRAILCSEEPNTSM*STGSTC
Trigger: GCATGTGGACCCTGTGCTCAACATGCTGGTGTTTGG...CTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp AGGAAGGAGGCTGGTAACTGCCGTCCTCTGCGGGCCATCTTGTGTTCTGAGGAGGACAGAGGGAAGATGTaGACGGCTCTGCCAAACAGG +
Preference number: 5 (lower is better)
Translates to: RKEAGNCRPLRAILCSEEDRGKM*TALPNR
Trigger: CCTGTTTGGCAGAGCCGTCAACATCTTCCCTCTGTC...CTCCTCAGAACACAAGATGGCCCGCAGAGGACGGCAGTTACCAGCCTCCTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp GGGGCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAAAGGGGTTCAGGTACTaGGCATCCAGCCACATGAAG +
Preference number: 5 (lower is better)
Translates to: GAIGAFPKAGWEVPGPCRKGFRY*ASSHMK
Trigger: CTTCATGTGGCTGGATGCCAAGTACCTGAACCCCTT...TCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp ACACCAAGGCACCGTGACAATTCCAGGACAAATGGCAGATGTGCCTGCCAGCTGGTCTCATGGGTTGTGTaGGAGAACTCCTCCTCCGCC +
Preference number: 5 (lower is better)
Translates to: TPRHRDNSRTNGRCACQLVSWVV*ENSSSA
Trigger: GGCGGAGGAGGAGTTCTCCAACACAACCCATGAGAC...CAGCTGGCAGGCACATCTGCCATTTGTCCTGGAATTGTCACGGTGCCTTGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp AGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCAGCCACATGAAGCCTTaGAGGTCCTGCTGTCTGATG +
Preference number: 5 (lower is better)
Translates to: RLSLWPGREAGRRLVTAVSHMKP*RSCCLM
Trigger: CATCAGACAGCAGGACCTCAAAGGCTTCATGTGGCT...GACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp CCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCTCCACATGCAGTGCGTaGAAAATCGCAATAGTGGCG +
Preference number: 5 (lower is better)
Translates to: PRLSLWPGREAGRRLVTASTCSA*KIAIVA
Trigger: CGCCACTATTGCGATTTTCAACGCACTGCATGTGGA...GGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp CCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGGACAGAGGGAAGATGTaGACGGCTCTGCCAAACAGG +
Preference number: 5 (lower is better)
Translates to: PSQKQAGKCQDHVEKVLQDRGKM*TALPNR
Trigger: CCTGTTTGGCAGAGCCGTCAACATCTTCCCTCTGTC...CTGAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp GCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAAGGGGTTCAGGTACTaGGCATCCAGCCACATGAAG +
Preference number: 5 (lower is better)
Translates to: AIGAFPKAGWEVPGPCREKGFRY*ASSHMK
Trigger: CTTCATGTGGCTGGATGCCAAGTACCTGAACCCCTT...TTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp CATGTTTCCAACTTCACCGACTTCTGCAGCACAGTGAGGTGGCAGGGCATTAGAGTCTCATGGGTTGTGTaGGAGAACTCCTCCTCCGCC +
Preference number: 5 (lower is better)
Translates to: HVSNFTDFCSTVRWQGIRVSWVV*ENSSSA
Trigger: GGCGGAGGAGGAGTTCTCCAACACAACCCATGAGAC...TCTAATGCCCTGCCACCTCACTGTGCTGCAGAAGTCGGTGAAGTTGGAAACATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR CAA 90 bp AGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGCCACATGAAGCCTTaGAGGTCCTGCTGTCTGATG +
Preference number: 5 (lower is better)
Translates to: SLPKSRLGSARTMSRKSFSHMKP*RSCCLM
Trigger: CATCAGACAGCAGGACCTCAAAGGCTTCATGTGGCT...GAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp CCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGAGCCACATGAAGCCTTaGAGGTCCTGCTGTCTGATG +
Preference number: 5 (lower is better)
Translates to: PSQKQAGKCQDHVEKVLQSHMKP*RSCCLM
Trigger: CATCAGACAGCAGGACCTCAAAGGCTTCATGTGGCT...CTGAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp CAAGCAGCCTTCCAAGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTCCTCATACCACTTATaGGTGAGGCTCTTCATCTGG +
Preference number: 5 (lower is better)
Translates to: QAAFQGFLCGLAEKQEGGSSYHL*VRLFIW
Trigger: CCAGATGAAGAGCCTCACCAATAAGTGGTATGAGGA...GCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCTTGGAAGGCTGCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp AGGCTTTCTCTGTGGCCTGGCAGAGAAGCAGGAAGGAGGCTGGTAACTGCCGTCTCCTCATACCACTTATaGGTGAGGCTCTTCATCTGG +
Preference number: 5 (lower is better)
Translates to: RLSLWPGREAGRRLVTAVSSYHL*VRLFIW
Trigger: CCAGATGAAGAGCCTCACCAATAAGTGGTATGAGGA...GACGGCAGTTACCAGCCTCCTTCCTGCTTCTCTGCCAGGCCACAGAGAAAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS GCA 90 bp ATGAGAATACCTAGAGAAACCACAGCCACGCTCTCAGGCAGAAAGTaGAGGCGGTACCGAATCAGCAGGTGCACCAGGATGATGCAGATG +
Preference number: 5 (lower is better)
Translates to: MRIPRETTATLSGRK*RRYRISRCTRMMQM
Trigger: CATCTGCATCATCCTGGTGCACCTGCTGATTCGGTACCGCCTGCACTTTCTGCCTGAGAGCGTGGCTGTGGTTTCTCTAGGTATTCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047815.13
CDS GCA 90 bp GCAAACACACACGTTTCACACAGGAAGGCCACAGTTCGGAGAGTCTaGTGCATGAGGATCTGGGTGACTGGGGAGAGGTTATGGTGTGTA +
Preference number: 5 (lower is better)
Translates to: ANTHVSHRKATVRRV*CMRIWVTGERLWCV
Trigger: TACACACCATAACCTCTCCCCAGTCACCCAGATCCTCATGCAGCAGACTCTCCGAACTGTGGCCTTCCTGTGTGAAACGTGTGTGTTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp CCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAAAGTCCTTCAGTCCACATGCAGTGCGTaGAAAATCGCAATAGTGGCG +
Preference number: 5 (lower is better)
Translates to: PSQKQAGKCQDHVEKVLQSTCSA*KIAIVA
Trigger: CGCCACTATTGCGATTTTCAACGCACTGCATGTGGA...CTGAAGGACTTTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp CATGTTTCCAACTTCACCGACTTCTGCAGCACAGTGAGGTGGCAGGGCATTAGACCAAACACCAGCATGTaGAGCACAGGGTCCACATGC +
Preference number: 5 (lower is better)
Translates to: HVSNFTDFCSTVRWQGIRPNTSM*STGSTC
Trigger: GCATGTGGACCCTGTGCTCAACATGCTGGTGTTTGG...TCTAATGCCCTGCCACCTCACTGTGCTGCAGAAGTCGGTGAAGTTGGAAACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS-3UTR CAA 90 bp GCCATAGGAGCCTTCCCAAAAGCAGGCTGGGAAGTGCCAGGACCATGTCGAGAATCCTCATACCACTTATaGGTGAGGCTCTTCATCTGG +
Preference number: 5 (lower is better)
Translates to: AIGAFPKAGWEVPGPCRESSYHL*VRLFIW
Trigger: CCAGATGAAGAGCCTCACCAATAAGTGGTATGAGGA...TTCTCGACATGGTCCTGGCACTTCCCAGCCTGCTTTTGGGAAGGCTCCTATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CCA 90 bp CACAGGGTCCACATGCAGTGCGTTGAAAATCGCAATAGTGGCGACTaGGTCGACTGCAGATATCAGGGAGCCAAATGCGAAACTGTCTGT +
Preference number: 5 (lower is better)
Translates to: HRVHMQCVENRNSGD*VDCRYQGAKCETVC
Trigger: ACAGACAGTTTCGCATTTGGCTCCCTGATATCTGCAGTCGACCCAGTCGCCACTATTGCGATTTTCAACGCACTGCATGTGGACCCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS GCA 90 bp AGAATGCTTTCTCCAAACACCAGCATGTTGAGCACAGGGTCCACATaGAGTGCGTTGAAAATCGCAATAGTGGCGACTGGGTCGACTGCA +
Preference number: 5 (lower is better)
Translates to: RMLSPNTSMLSTGST*SALKIAIVATGSTA
Trigger: TGCAGTCGACCCAGTCGCCACTATTGCGATTTTCAACGCACTGCATGTGGACCCTGTGCTCAACATGCTGGTGTTTGGAGAAAGCATTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS-3UTR CAA 90 bp CATCAGTGTAAACATTTTCATTGTGCCCACAGGGGCCATAGGAGCCTTCCCAAACCAAACACCAGCATGTaGAGCACAGGGTCCACATGC +
Preference number: 5 (lower is better)
Translates to: HQCKHFHCAHRGHRSLPKPNTSM*STGSTC
Trigger: GCATGTGGACCCTGTGCTCAACATGCTGGTGTTTGG...TTTGGGAAGGCTCCTATGGCCCCTGTGGGCACAATGAAAATGTTTACACTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS TCA 90 bp CTACTACAAAAGCCGAGATTGCCGTTCCAAAGACAGCGAAGAGAGTaGTGGAACCGATGTTCTGAAAGAAGTTCCCCTTGTGCAGTGAGT +
Preference number: 5 (lower is better)
Translates to: LLQKPRLPFQRQRRE*WNRCSERSSPCAVS
Trigger: ACTCACTGCACAAGGGGAACTTCTTTCAGAACATCGGTTCCATCACTCTCTTCGCTGTCTTTGGAACGGCAATCTCGGCTTTTGTAGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS TCA 90 bp AGAGTGAGATTCCTTCTGCCAGCCCATATGGCAGGTAAGCAAAAATaGTCATCATGCCAAACTCCAGGGAAGGCGTTTTCCTCAGGTCAA +
Preference number: 5 (lower is better)
Translates to: RVRFLLPAHMAGKQK*SSCQTPGKAFSSGQ
Trigger: TTGACCTGAGGAAAACGCCTTCCCTGGAGTTTGGCATGATGATCATTTTTGCTTACCTGCCATATGGGCTGGCAGAAGGAATCTCACTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS GCA 90 bp ATCATCATGCCAAACTCCAGGGAAGGCGTTTTCCTCAGGTCAATGTaGTTCAACACTAATGCTGAAATCAAGCCAGTCAGCGTGCCAAGT +
Preference number: 5 (lower is better)
Translates to: IIMPNSREGVFLRSM*FNTNAEIKPVSVPS
Trigger: ACTTGGCACGCTGACTGGCTTGATTTCAGCATTAGTGTTGAAGCACATTGACCTGAGGAAAACGCCTTCCCTGGAGTTTGGCATGATGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS CAA 72 bp TGGGCCTGCTCTCCCGTCTGCACCGGAAGGATAGGCTaGGCAGGTGTCGGCAGCACCAGCTTCGTGGTGACA +
Preference number: 6 (lower is better)
Translates to: WACSPVCTGRIG*AGVGSTSFVVT
Trigger: TGTCACCACGAAGCTGGTGCTGCCGACACCTGCCAAGCCTATCCTTCCGGTGCAGACGGGAGAGCAGGCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS TCA 72 bp GGCCATGGTGGAGGTCCTCCTGTGTCAGCCGCCGTGTaGAGAAGGGGTTCAGGTACTTGGCATCCAGCCACA +
Preference number: 6 (lower is better)
Translates to: GHGGGPPVSAAV*RRGSGTWHPAT
Trigger: TGTGGCTGGATGCCAAGTACCTGAACCCCTTCTTCACACGGCGGCTGACACAGGAGGACCTCCACCATGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS GCA 72 bp CTGAAGAAAATGGTCATGCCGCTCGACTGCTCCTCCTaGTGGGCCTGCTCTCCCGTCTGCACCGGAAGGATA +
Preference number: 6 (lower is better)
Translates to: LKKMVMPLDCSS*WACSPVCTGRI
Trigger: TATCCTTCCGGTGCAGACGGGAGAGCAGGCCCAGCAGGAGGAGCAGTCGAGCGGCATGACCATTTTCTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CAA 90 bp ATGGCATTACCCATCTTCTCAGTCTTGCTGAGGTTGACGTCTTTCTaGCTCCTTCGGCGAGCCCGGGCATCCTCGATGTCCACGAGGCGG +
Preference number: 6 (lower is better)
Translates to: MALPIFSVLLRLTSF*LLRRARASSMSTRR
Trigger: CCGCCTCGTGGACATCGAGGATGCCCGGGCTCGCCGAAGGAGCAAGAAAGACGTCAACCTCAGCAAGACTGAGAAGATGGGTAATGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CCA 72 bp CACTTATTGGTGAGGCTCTTCATCTGGATGCGGCCATaGTGGAGGTCCTCCTGTGTCAGCCGCCGTGTGAAG +
Preference number: 6 (lower is better)
Translates to: HLLVRLFIWMRP*WRSSCVSRRVK
Trigger: CTTCACACGGCGGCTGACACAGGAGGACCTCCACCATGGCCGCATCCAGATGAAGAGCCTCACCAATAAGTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CAA 72 bp CCCATCTTCTCAGTCTTGCTGAGGTTGACGTCTTTCTaGCTCCTTCGGCGAGCCCGGGCATCCTCGATGTCC +
Preference number: 6 (lower is better)
Translates to: PIFSVLLRLTSF*LLRRARASSMS
Trigger: GGACATCGAGGATGCCCGGGCTCGCCGAAGGAGCAAGAAAGACGTCAACCTCAGCAAGACTGAGAAGATGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CAA 90 bp AGGTCCTCCTGTGTCAGCCGCCGTGTGAAGAAGGGGTTCAGGTACTaGGCATCCAGCCACATGAAGCCTTTGAGGTCCTGCTGTCTGATG +
Preference number: 6 (lower is better)
Translates to: RSSCVSRRVKKGFRY*ASSHMKPLRSCCLM
Trigger: CATCAGACAGCAGGACCTCAAAGGCTTCATGTGGCTGGATGCCAAGTACCTGAACCCCTTCTTCACACGGCGGCTGACACAGGAGGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS TCA 72 bp ACGGTCCCTGACGGACCTCCTCATACCACTTATTGGTaGGGCTCTTCATCTGGATGCGGCCATGGTGGAGGT +
Preference number: 6 (lower is better)
Translates to: TVPDGPPHTTYW*GSSSGCGHGGG
Trigger: ACCTCCACCATGGCCGCATCCAGATGAAGAGCCTCACCAATAAGTGGTATGAGGAGGTCCGTCAGGGACCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CCA 72 bp TTATTGGTGAGGCTCTTCATCTGGATGCGGCCATGGTaGAGGTCCTCCTGTGTCAGCCGCCGTGTGAAGAAG +
Preference number: 6 (lower is better)
Translates to: LLVRLFIWMRPW*RSSCVSRRVKK
Trigger: CTTCTTCACACGGCGGCTGACACAGGAGGACCTCCACCATGGCCGCATCCAGATGAAGAGCCTCACCAATAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CAA 90 bp TGCTCTGACTCGATGGCATTACCCATCTTCTCAGTCTTGCTGAGGTaGACGTCTTTCTTGCTCCTTCGGCGAGCCCGGGCATCCTCGATG +
Preference number: 6 (lower is better)
Translates to: CSDSMALPIFSVLLR*TSFLLLRRARASSM
Trigger: CATCGAGGATGCCCGGGCTCGCCGAAGGAGCAAGAAAGACGTCAACCTCAGCAAGACTGAGAAGATGGGTAATGCCATCGAGTCAGAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CAA 90 bp TCTGACAGGTGCTCTGACTCGATGGCATTACCCATCTTCTCAGTCTaGCTGAGGTTGACGTCTTTCTTGCTCCTTCGGCGAGCCCGGGCA +
Preference number: 6 (lower is better)
Translates to: SDRCSDSMALPIFSV*LRLTSFLLLRRARA
Trigger: TGCCCGGGCTCGCCGAAGGAGCAAGAAAGACGTCAACCTCAGCAAGACTGAGAAGATGGGTAATGCCATCGAGTCAGAGCACCTGTCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS TCA 72 bp GGCAGCACCAGCTTCGTGGTGACACCCAAGGTGGTGTaGAGGGTGAAGTTGAAGGTCTCATGGGTTGTGTTG +
Preference number: 6 (lower is better)
Translates to: GSTSFVVTPKVV*RVKLKVSWVVL
Trigger: CAACACAACCCATGAGACCTTCAACTTCACCCTTCACACCACCTTGGGTGTCACCACGAAGCTGGTGCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS GCA 72 bp CACGTTTCACACAGGAAGGCCACAGTTCGGAGAGTCTaGTGCATGAGGATCTGGGTGACTGGGGAGAGGTTA +
Preference number: 6 (lower is better)
Translates to: HVSHRKATVRRV*CMRIWVTGERL
Trigger: TAACCTCTCCCCAGTCACCCAGATCCTCATGCAGCAGACTCTCCGAACTGTGGCCTTCCTGTGTGAAACGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CAA 72 bp TCGATGGCATTACCCATCTTCTCAGTCTTGCTGAGGTaGACGTCTTTCTTGCTCCTTCGGCGAGCCCGGGCA +
Preference number: 6 (lower is better)
Translates to: SMALPIFSVLLR*TSFLLLRRARA
Trigger: TGCCCGGGCTCGCCGAAGGAGCAAGAAAGACGTCAACCTCAGCAAGACTGAGAAGATGGGTAATGCCATCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS TCA 72 bp TCAGCGTGCCAAGTGCTGCGGAGCCAAAGAACATTTTaGGGAAGTAGCCAAGGGCCTGTGAGAACGTTTGCC +
Preference number: 6 (lower is better)
Translates to: SACQVLRSQRTF*GSSQGPVRTFA
Trigger: GGCAAACGTTCTCACAGGCCCTTGGCTACTTCCTCAAAATGTTCTTTGGCTCCGCAGCACTTGGCACGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CAA 72 bp ACCAGCATGTTGAGCACAGGGTCCACATGCAGTGCGTaGAAAATCGCAATAGTGGCGACTGGGTCGACTGCA +
Preference number: 6 (lower is better)
Translates to: TSMLSTGSTCSA*KIAIVATGSTA
Trigger: TGCAGTCGACCCAGTCGCCACTATTGCGATTTTCAACGCACTGCATGTGGACCCTGTGCTCAACATGCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS GCA 72 bp TCTCCAAACACCAGCATGTTGAGCACAGGGTCCACATaGAGTGCGTTGAAAATCGCAATAGTGGCGACTGGG +
Preference number: 6 (lower is better)
Translates to: SPNTSMLSTGST*SALKIAIVATG
Trigger: CCCAGTCGCCACTATTGCGATTTTCAACGCACTGCATGTGGACCCTGTGCTCAACATGCTGGTGTTTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CAA 90 bp TCTCCAAACACCAGCATGTTGAGCACAGGGTCCACATGCAGTGCGTaGAAAATCGCAATAGTGGCGACTGGGTCGACTGCAGATATCAGG +
Preference number: 6 (lower is better)
Translates to: SPNTSMLSTGSTCSA*KIAIVATGSTADIR
Trigger: CCTGATATCTGCAGTCGACCCAGTCGCCACTATTGCGATTTTCAACGCACTGCATGTGGACCCTGTGCTCAACATGCTGGTGTTTGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CCA 72 bp CACATGCAGTGCGTTGAAAATCGCAATAGTGGCGACTaGGTCGACTGCAGATATCAGGGAGCCAAATGCGAA +
Preference number: 6 (lower is better)
Translates to: HMQCVENRNSGD*VDCRYQGAKCE
Trigger: TTCGCATTTGGCTCCCTGATATCTGCAGTCGACCCAGTCGCCACTATTGCGATTTTCAACGCACTGCATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS CAA 72 bp TGCTCTGACTCGATGGCATTACCCATCTTCTCAGTCTaGCTGAGGTTGACGTCTTTCTTGCTCCTTCGGCGA +
Preference number: 6 (lower is better)
Translates to: CSDSMALPIFSV*LRLTSFLLLRR
Trigger: TCGCCGAAGGAGCAAGAAAGACGTCAACCTCAGCAAGACTGAGAAGATGGGTAATGCCATCGAGTCAGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS TCA 72 bp CTGGGTGACTGGGGAGAGGTTATGGTGTGTATAGTGTaGCATCACGATGCCAGAAAACAGGATCGCCATGAT +
Preference number: 6 (lower is better)
Translates to: LGDWGEVMVCIV*HHDARKQDRHD
Trigger: ATCATGGCGATCCTGTTTTCTGGCATCGTGATGTCACACTATACACACCATAACCTCTCCCCAGTCACCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS GCA 72 bp TGCGTTGAAAATCGCAATAGTGGCGACTGGGTCGACTaGAGATATCAGGGAGCCAAATGCGAAACTGTCTGT +
Preference number: 6 (lower is better)
Translates to: CVENRNSGDWVD*RYQGAKCETVC
Trigger: ACAGACAGTTTCGCATTTGGCTCCCTGATATCTGCAGTCGACCCAGTCGCCACTATTGCGATTTTCAACGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS TCA 72 bp CCAAAGACAGCGAAGAGAGTGATGGAACCGATGTTCTaGAAGAAGTTCCCCTTGTGCAGTGAGTATCCTGAC +
Preference number: 6 (lower is better)
Translates to: PKTAKRVMEPMF*KKFPLCSEYPD
Trigger: GTCAGGATACTCACTGCACAAGGGGAACTTCTTTCAGAACATCGGTTCCATCACTCTCTTCGCTGTCTTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS TCA 72 bp AAGCCGAGATTGCCGTTCCAAAGACAGCGAAGAGAGTaGTGGAACCGATGTTCTGAAAGAAGTTCCCCTTGT +
Preference number: 6 (lower is better)
Translates to: KPRLPFQRQRRE*WNRCSERSSPC
Trigger: ACAAGGGGAACTTCTTTCAGAACATCGGTTCCATCACTCTCTTCGCTGTCTTTGGAACGGCAATCTCGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS TCA 72 bp TTCCTTCTGCCAGCCCATATGGCAGGTAAGCAAAAATaGTCATCATGCCAAACTCCAGGGAAGGCGTTTTCC +
Preference number: 6 (lower is better)
Translates to: FLLPAHMAGKQK*SSCQTPGKAFS
Trigger: GGAAAACGCCTTCCCTGGAGTTTGGCATGATGATCATTTTTGCTTACCTGCCATATGGGCTGGCAGAAGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7
CDS GCA 72 bp CCAAACTCCAGGGAAGGCGTTTTCCTCAGGTCAATGTaGTTCAACACTAATGCTGAAATCAAGCCAGTCAGC +
Preference number: 6 (lower is better)
Translates to: PNSREGVFLRSM*FNTNAEIKPVS
Trigger: GCTGACTGGCTTGATTTCAGCATTAGTGTTGAAGCACATTGACCTGAGGAAAACGCCTTCCCTGGAGTTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
CDS TCA 72 bp AGTAGCCAAGGGCCTGTGAGAACGTTTGCCACCCACTaGCATCTGACATATGTTTTCTTGTTAGACCTTCAG +
Preference number: 6 (lower is better)
Translates to: SSQGPVRTFATH*HLTYVFLLDLQ
Trigger: CTGAAGGTCTAACAAGAAAACATATGTCAGATGTCAGTGGGTGGCAAACGTTCTCACAGGCCCTTGGCTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047815.13
ENSMUST00000073873.5
ENSMUST00000109218.7