RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC7A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031596

Ensembl transcript IDs: ENSMUST00000057784.15, ENSMUST00000098816.10, ENSMUST00000117077.8, ENSMUST00000118432.2

Found 308 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCACTGCCAGTGGACGTGCAAGGGAGGGGCCTAGGGACGAGGTGTaGGTACAGGAGCCTGCCTGCCCTGCAGGCAGCACAAGGCTTTTT +
Preference number: 1 (lower is better)
Translates to: GTASGRAREGPRDEV*VQEPACPAGSTRLF
Trigger: AAAAAGCCTTGTGCTGCCTGCAGGGCAGGCAGGCTCCTGTACCCACACCTCGTCCCTAGGCCCCTCCCTTGCACGTCCACTGGCAGTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR GCA 90 bp GCAAGGGAGGGGCCTAGGGACGAGGTGTGGGTACAGGAGCCTGCCTaGCCTGCAGGCAGCACAAGGCTTTTTGCAATCAGGGTCTTGGTG +
Preference number: 1 (lower is better)
Translates to: AREGPRDEVWVQEPA*PAGSTRLFAIRVLV
Trigger: CACCAAGACCCTGATTGCAAAAAGCCTTGTGCTGCCTGCAGGGCAGGCAGGCTCCTGTACCCACACCTCGTCCCTAGGCCCCTCCCTTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR GCA 90 bp AAGACACCACCAGAGTGTAACAGCAGACACCCACACAGTGCAGCCTaGCTGGCTGTGCATCACACTGGGGTCCTAGGTAATCTCTATGGG +
Preference number: 1 (lower is better)
Translates to: KTPPECNSRHPHSAA*LAVHHTGVLGNLYG
Trigger: CCCATAGAGATTACCTAGGACCCCAGTGTGATGCACAGCCAGGCAGGCTGCACTGTGTGGGTGTCTGCTGTTACACTCTGGTGGTGTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR GCA 90 bp GGGGTCCTAGGTAATCTCTATGGGTCTGTCAGTGGTCAGACAGGCTaGTTAGAGTCCAGAAATTGTGGCAGTGGCTTCAGCTGTGGTAAG +
Preference number: 1 (lower is better)
Translates to: GVLGNLYGSVSGQTG*LESRNCGSGFSCGK
Trigger: CTTACCACAGCTGAAGCCACTGCCACAATTTCTGGACTCTAAGCAGCCTGTCTGACCACTGACAGACCCATAGAGATTACCTAGGACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR GCA 90 bp AACTCACTCTGTAGACCAGGCTGGCTTCGAACTCAGAGATCGGCCTaGTTCTGTCTCTCGAGTGCTGGGATTAAAGGCACTGGAAGAAAA +
Preference number: 1 (lower is better)
Translates to: NSLCRPGWLRTQRSA*FCLSSAGIKGTGRK
Trigger: TTTTCTTCCAGTGCCTTTAATCCCAGCACTCGAGAGACAGAAGCAGGCCGATCTCTGAGTTCGAAGCCAGCCTGGTCTACAGAGTGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR TCA 90 bp TTTTGCAATCAGGGTCTTGGTGATGTACTGCTCACCCTGAGGCTATaGACCTGCAGGAAATACAGCAGGCCAGTCTCTACCATGCCAGTT +
Preference number: 1 (lower is better)
Translates to: FCNQGLGDVLLTLRL*TCRKYSRPVSTMPV
Trigger: AACTGGCATGGTAGAGACTGGCCTGCTGTATTTCCTGCAGGTTCATAGCCTCAGGGTGAGCAGTACATCACCAAGACCCTGATTGCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR TCA 90 bp ACAAGGCTTTTTGCAATCAGGGTCTTGGTGATGTACTGCTCACCCTaGGGCTATGAACCTGCAGGAAATACAGCAGGCCAGTCTCTACCA +
Preference number: 1 (lower is better)
Translates to: TRLFAIRVLVMYCSP*GYEPAGNTAGQSLP
Trigger: TGGTAGAGACTGGCCTGCTGTATTTCCTGCAGGTTCATAGCCTCAGGGTGAGCAGTACATCACCAAGACCCTGATTGCAAAAAGCCTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR GCA 90 bp TTAGAAGAACTATGGGAAGCAACCATCTTCTTTGTCTACGGATTATaGAGGGCAACTAGCATTTGTGGTCTCCTGGGAGTGCCACACCTG +
Preference number: 1 (lower is better)
Translates to: LEELWEATIFFVYGL*RATSICGLLGVPHL
Trigger: CAGGTGTGGCACTCCCAGGAGACCACAAATGCTAGTTGCCCTGCATAATCCGTAGACAAAGAAGATGGTTGCTTCCCATAGTTCTTCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CCA 90 bp AGGGTGGCTGGCCTTCAGATTTTACCACTTGTACCCTGGAAATTTTaGAATGTCAGCACTAAGTTCTGGGTCAAGGATGCATCCCTGACA +
Preference number: 1 (lower is better)
Translates to: RVAGLQILPLVPWKF*NVSTKFWVKDASLT
Trigger: TGTCAGGGATGCATCCTTGACCCAGAACTTAGTGCTGACATTCCAAAATTTCCAGGGTACAAGTGGTAAAATCTGAAGGCCAGCCACCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR TCA 90 bp TGCTGCCCATTCGGTTCTTCACAGGAAAGGAAAAGGCACGGTCACTaGGATAGCATGTCTTTACAGACATTCATGTTTCCAACGTGCTCT +
Preference number: 1 (lower is better)
Translates to: CCPFGSSQERKRHGH*DSMSLQTFMFPTCS
Trigger: AGAGCACGTTGGAAACATGAATGTCTGTAAAGACATGCTATCTCAGTGACCGTGCCTTTTCCTTTCCTGTGAAGAACCGAATGGGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR TCA 90 bp TTACAATGTATAGACAATGCCCATTCCTTGTCCCTTCCCCACCCATaGCCACTGTTAAACATCCTGACAGGGGATGGCATTTCAGTATGT +
Preference number: 1 (lower is better)
Translates to: LQCIDNAHSLSLPHP*PLLNILTGDGISVC
Trigger: ACATACTGAAATGCCATCCCCTGTCAGGATGTTTAACAGTGGTCATGGGTGGGGAAGGGACAAGGAATGGGCATTGTCTATACATTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CCA 90 bp TCATCCAACTCCTCCTCTGTAAAGCACGCAGTTAGAAAGGGTGGCTaGCCTTCAGATTTTACCACTTGTACCCTGGAAATTTTGGAATGT +
Preference number: 1 (lower is better)
Translates to: SSNSSSVKHAVRKGG*PSDFTTCTLEILEC
Trigger: ACATTCCAAAATTTCCAGGGTACAAGTGGTAAAATCTGAAGGCCAGCCACCCTTTCTAACTGCGTGCTTTACAGAGGAGGAGTTGGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CCA 90 bp GTCCCTTCCCCACCCATGACCACTGTTAAACATCCTGACAGGGGATaGCATTTCAGTATGTTTAAACTGATGGTCATATACCTAATAAAG +
Preference number: 1 (lower is better)
Translates to: VPSPPMTTVKHPDRG*HFSMFKLMVIYLIK
Trigger: CTTTATTAGGTATATGACCATCAGTTTAAACATACTGAAATGCCATCCCCTGTCAGGATGTTTAACAGTGGTCATGGGTGGGGAAGGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CCA 90 bp GACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTCTCCCTaGCCGTTTAAGAAAGCTGTCTTAGCAAGTAGGAGAAGGATATAT +
Preference number: 1 (lower is better)
Translates to: DYLFILSYRGKKHSP*PFKKAVLASRRRIY
Trigger: ATATATCCTTCTCCTACTTGCTAAGACAGCTTTCTTAAACGGCCAGGGAGAGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CCA 90 bp ATGCCAAAGAGCACCAGTAAAATAAATGATCTCTTAGAAGAACTATaGGAAGCAACCATCTTCTTTGTCTACGGATTATGCAGGGCAACT +
Preference number: 1 (lower is better)
Translates to: MPKSTSKINDLLEEL*EATIFFVYGLCRAT
Trigger: AGTTGCCCTGCATAATCCGTAGACAAAGAAGATGGTTGCTTCCCATAGTTCTTCTAAGAGATCATTTATTTTACTGGTGCTCTTTGGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR GCA 90 bp AAGCTATCATGGGGCTCGTCCCTGATTCTCCCTCTCCGAGCAGCCATCAATGACCTCATTGTTAAGGTATaGGTGGTAAGACCGAGGGCC +
Preference number: 2 (lower is better)
Translates to: KLSWGSSLILPLRAAINDLIVKV*VVRPRA
Trigger: GGCCCTCGGTCTTACCACGCATACCTTAACAATGAG...GTCATTGATGGCTGCTCGGAGAGGGAGAATCAGGGACGAGCCCCATGATAGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp GACCAAGGCTCTCAAAACCAGGATTGGCCATCTCCAGCCACAGACTACCTCTTCACAGAATCCACCATCTaGAGAGAAGCTGTCTGGAGG +
Preference number: 2 (lower is better)
Translates to: DQGSQNQDWPSPATDYLFTESTI*REAVWR
Trigger: CCTCCAGACAGCTTCTCTTCAGATGGTGGATTCTGT...GAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAGCCTTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR TCA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCTCCCTTCCCCACCCATaGCCACTGTTAAACATCCTG +
Preference number: 2 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSSLPHP*PLLNIL
Trigger: CAGGATGTTTAACAGTGGTCATGGGTGGGGAAGGGA...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR TCA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCACAGAATCCACCATCTaGAGAGAAGCTGTCTGGAGG +
Preference number: 2 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSTESTI*REAVWR
Trigger: CCTCCAGACAGCTTCTCTTCAGATGGTGGATTCTGT...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR GCA 90 bp GTCACTCATCTCACCAGCCCCAAGCCCTACATAGTAGGTGACTGTGAACCATTTCTCATTGTTAAGGTATaGGTGGTAAGACCGAGGGCC +
Preference number: 2 (lower is better)
Translates to: VTHLTSPKPYIVGDCEPFLIVKV*VVRPRA
Trigger: GGCCCTCGGTCTTACCACGCATACCTTAACAATGAG...AAATGGTTCACAGTCACCTACTATGTAGGGCTTGGGGCTGGTGAGATGAGTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CAA 90 bp TTCTGGGTCAAGGATGCATCCCTGACAACCAGGATCCCAGAACCTTaGCCTGCTGATCTGAGAGCTAATCACAATGAACGTCAGCTTATG +
Preference number: 2 (lower is better)
Translates to: FWVKDASLTTRIPEP*PADLRANHNERQLM
Trigger: CATAAGCTGACGTTCATTGTGATTAGCTCTCAGATCAGCAGGCAAAGGTTCTGGGATCCTGGTTGTCAGGGATGCATCCTTGACCCAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp GGAGGCCTATTCTGCCTTCAGTCTCTGCCAAGCATCTTTGTAAGTCATCTGATCACAGAATCCACCATCTaGAGAGAAGCTGTCTGGAGG +
Preference number: 2 (lower is better)
Translates to: GGLFCLQSLPSIFVSHLITESTI*REAVWR
Trigger: CCTCCAGACAGCTTCTCTTCAGATGGTGGATTCTGT...GATCAGATGACTTACAAAGATGCTTGGCAGAGACTGAAGGCAGAATAGGCCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR TCA 90 bp CCATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTCCCTTCCCCACCCATaGCCACTGTTAAACATCCTG +
Preference number: 2 (lower is better)
Translates to: PSPATDYLFILSYRGKKHSLPHP*PLLNIL
Trigger: CAGGATGTTTAACAGTGGTCATGGGTGGGGAAGGGA...GTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR TCA 90 bp GTCACTCATCTCACCAGCCCCAAGCCCTACATAGTAGGTGACTGTGAACCATTTCCGAGCAGCCATCAATaGCATCAATTCCTGATCATG +
Preference number: 2 (lower is better)
Translates to: VTHLTSPKPYIVGDCEPFPSSHQ*HQFLIM
Trigger: CATGATCAGGAATTGATGTCATTGATGGCTGCTCGG...AAATGGTTCACAGTCACCTACTATGTAGGGCTTGGGGCTGGTGAGATGAGTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR GCA 90 bp CTCTGGTGTGAACATATTGAGCTAGATTCTGCCCCTGACTGCACACACAGTGGGCTGTGTGAAGGGCACTaGTGGAACAGTAAGGATTTT +
Preference number: 2 (lower is better)
Translates to: LWCEHIELDSAPDCTHSGLCEGH*WNSKDF
Trigger: AAAATCCTTACTGTTCCAGCAGTGCCCTTCACACAG...CCCACTGTGTGTGCAGTCAGGGGCAGAATCTAGCTCAATATGTTCACACCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CCA 90 bp AAGCTATCATGGGGCTCGTCCCTGATTCTCCCTCTCCGAGCAGCCATCAATGACGTACCCTGGAAATTTTaGAATGTCAGCACTAAGTTC +
Preference number: 2 (lower is better)
Translates to: KLSWGSSLILPLRAAINDVPWKF*NVSTKF
Trigger: GAACTTAGTGCTGACATTCCAAAATTTCCAGGGTAC...GTCATTGATGGCTGCTCGGAGAGGGAGAATCAGGGACGAGCCCCATGATAGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR GCA 90 bp TCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCTCTGGCTTAAAGGGTCCCAGTGTGTGCAGTATATaGCACCAATTACCATGCTGG +
Preference number: 2 (lower is better)
Translates to: SDLLKPLELRSLSGLKGPSVCSI*HQLPCW
Trigger: CCAGCATGGTAATTGGTGGCATATACTGCACACACT...GGGACCCTTTAAGCCAGAGAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR CCA 90 bp GACCAAGGCTCTCAAAACCAGGATTGGCCATCTCCAGCCACAGACTACCTCTTCCATCCTGACAGGGGATaGCATTTCAGTATGTTTAAA +
Preference number: 2 (lower is better)
Translates to: DQGSQNQDWPSPATDYLFHPDRG*HFSMFK
Trigger: TTTAAACATACTGAAATGCCATCCCCTGTCAGGATG...GAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAGCCTTGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CAA 90 bp CAAAACCAGGATTGGCCATCTCCAGCCACAGACTACCTCTTCATCTaGTCATACAGAGGAAAGAAACACTCTCCCTGGCCGTTTAAGAAA +
Preference number: 2 (lower is better)
Translates to: QNQDWPSPATDYLFI*SYRGKKHSPWPFKK
Trigger: TTTCTTAAACGGCCAGGGAGAGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR TCA 90 bp AACCACCACTATTTCCCCAGCCACCTAGGACATATACAGAATACATCTCTATTCGGGGATACATATAGCTaGGGAGTGCTCTCAGGCAGT +
Preference number: 2 (lower is better)
Translates to: NHHYFPSHLGHIQNTSLFGDTYS*GVLSGS
Trigger: ACTGCCTGAGAGCACTCCTCAGCTATATGTATCCCC...GAATAGAGATGTATTCTGTATATGTCCTAGGTGGCTGGGGAAATAGTGGTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR TCA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCAATAACCAACAACATTaGACACTCACATCGCAGACA +
Preference number: 2 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSNNQQH*TLTSQT
Trigger: TGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATT...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR TCA 90 bp CTTAAAACGACACTACCAAACAACACATTCTTTACATTTGCACAAGTACTTGCACATGGGGCTCGTCCCTaGTTCTCCCTCTCCGAGCAG +
Preference number: 2 (lower is better)
Translates to: LKTTLPNNTFFTFAQVLAHGARP*FSLSEQ
Trigger: CTGCTCGGAGAGGGAGAATCAGGGACGAGCCCCATG...TGCAAGTACTTGTGCAAATGTAAAGAATGTGTTGTTTGGTAGTGTCGTTTTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR GCA 90 bp ATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGCCTCATTGTTAAGGTATaGGTGGTAAGACCGAGGGCC +
Preference number: 2 (lower is better)
Translates to: IADIHVRTRTYCFGDTYSLIVKV*VVRPRA
Trigger: GGCCCTCGGTCTTACCACGCATACCTTAACAATGAG...GCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR GCA 90 bp GGAGGCCTATTCTGCCTTCAGTCTCTGCCAAGCATCTTTGTAAGTCATCTGATCAGTGTGTGCAGTATATaGCACCAATTACCATGCTGG +
Preference number: 2 (lower is better)
Translates to: GGLFCLQSLPSIFVSHLISVCSI*HQLPCW
Trigger: CCAGCATGGTAATTGGTGGCATATACTGCACACACT...GATCAGATGACTTACAAAGATGCTTGGCAGAGACTGAAGGCAGAATAGGCCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR CCA 90 bp CTATCGTCCTTCCCAAACTATTTTAGCCCTTGTTCATCCAACTCCTCCTCTGTAATGGTCAGGCAGTGGTaGCACACGCCTTTAATTCCA +
Preference number: 2 (lower is better)
Translates to: LSSFPNYFSPCSSNSSSVMVRQW*HTPLIP
Trigger: TGGAATTAAAGGCGTGTGCCACCACTGCCTGACCAT...TACAGAGGAGGAGTTGGATGAACAAGGGCTAAAATAGTTTGGGAAGGACGATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp AACCACCACTATTTCCCCAGCCACCTAGGACATATACAGAATACATCTCTATTCACAGAATCCACCATCTaGAGAGAAGCTGTCTGGAGG +
Preference number: 2 (lower is better)
Translates to: NHHYFPSHLGHIQNTSLFTESTI*REAVWR
Trigger: CCTCCAGACAGCTTCTCTTCAGATGGTGGATTCTGT...GAATAGAGATGTATTCTGTATATGTCCTAGGTGGCTGGGGAAATAGTGGTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR TCA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCAGACTTTCAAGGAGTTaGTGGGTATATCATTTACAG +
Preference number: 2 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSRLSRS*WVYHLQ
Trigger: CTGTAAATGATATACCCATCAACTCCTTGAAAGTCT...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR TCA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCAGATCAAAGGAAAGATaGGAAACAAAAGACTGGGTT +
Preference number: 2 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSRSKER*ETKDWV
Trigger: AACCCAGTCTTTTGTTTCTCATCTTTCCTTTGATCT...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR GCA 90 bp AACCACCACTATTTCCCCAGCCACCTAGGACATATACAGAATACATCTCTATTCCTCATTGTTAAGGTATaGGTGGTAAGACCGAGGGCC +
Preference number: 2 (lower is better)
Translates to: NHHYFPSHLGHIQNTSLFLIVKV*VVRPRA
Trigger: GGCCCTCGGTCTTACCACGCATACCTTAACAATGAG...GAATAGAGATGTATTCTGTATATGTCCTAGGTGGCTGGGGAAATAGTGGTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR CCA 90 bp TCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCTCTGGCTTAAAGGGTCCCCATCCTGACAGGGGATaGCATTTCAGTATGTTTAAA +
Preference number: 2 (lower is better)
Translates to: SDLLKPLELRSLSGLKGPHPDRG*HFSMFK
Trigger: TTTAAACATACTGAAATGCCATCCCCTGTCAGGATG...GGGACCCTTTAAGCCAGAGAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR CCA 90 bp CAGAAACAAAACGAAAGTCTCAAGGCCTCAGGTTCTACTCCATTCAGATTCCAATCTCAAAACCAGGATTaGCCATCTCCAGCCACAGAC +
Preference number: 2 (lower is better)
Translates to: QKQNESLKASGSTPFRFQSQNQD*PSPATD
Trigger: GTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGA...TTGGAATCTGAATGGAGTAGAACCTGAGGCCTTGAGACTTTCGTTTTGTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CCA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCAGGAGGCAGAGGCAGGTaGATTTCTGTGAGTTCAAGG +
Preference number: 2 (lower is better)
Translates to: SLLPILPYYLRHHQSVTAGGRGR*ISVSSR
Trigger: CCTTGAACTCACAGAAATCCACCTGCCTCTGCCTCC...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CCA 90 bp CAGAAACAAAACGAAAGTCTCAAGGCCTCAGGTTCTACTCCATTCAGATTCCAAATGGTCAGGCAGTGGTaGCACACGCCTTTAATTCCA +
Preference number: 2 (lower is better)
Translates to: QKQNESLKASGSTPFRFQMVRQW*HTPLIP
Trigger: TGGAATTAAAGGCGTGTGCCACCACTGCCTGACCAT...TTGGAATCTGAATGGAGTAGAACCTGAGGCCTTGAGACTTTCGTTTTGTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CCA 90 bp CAGAAACAAAACGAAAGTCTCAAGGCCTCAGGTTCTACTCCATTCAGATTCCAAGTCAGCACTAAGTTCTaGGTCAAGGATGCATCCCTG +
Preference number: 2 (lower is better)
Translates to: QKQNESLKASGSTPFRFQVSTKF*VKDASL
Trigger: CAGGGATGCATCCTTGACCCAGAACTTAGTGCTGAC...TTGGAATCTGAATGGAGTAGAACCTGAGGCCTTGAGACTTTCGTTTTGTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CCA 90 bp ACCCTAAGGCAGAGACTAGGACGTTTTGTACCAAGTGTGCTGAACTCATGTGTAGTTAGAAAGGGTGGCTaGCCTTCAGATTTTACCACT +
Preference number: 2 (lower is better)
Translates to: TLRQRLGRFVPSVLNSCVVRKGG*PSDFTT
Trigger: AGTGGTAAAATCTGAAGGCCAGCCACCCTTTCTAAC...TACACATGAGTTCAGCACACTTGGTACAAAACGTCCTAGTCTCTGCCTTAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CCA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCACCAGGAAGCAAGAGATaGGGTCTCGGTGCAACTTCA +
Preference number: 2 (lower is better)
Translates to: SLLPILPYYLRHHQSVTAPGSKR*GLGATS
Trigger: TGAAGTTGCACCGAGACCCCATCTCTTGCTTCCTGG...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp GGAGGCCTATTCTGCCTTCAGTCTCTGCCAAGCATCTTTGTAAGTCATCTGATCAATAACCAACAACATTaGACACTCACATCGCAGACA +
Preference number: 2 (lower is better)
Translates to: GGLFCLQSLPSIFVSHLINNQQH*TLTSQT
Trigger: TGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATT...GATCAGATGACTTACAAAGATGCTTGGCAGAGACTGAAGGCAGAATAGGCCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR TCA 90 bp AAGCATCTTTGTAAGTCATCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCCCACGGTACCTTTCCTaGGACTTTCAAGGAGTTGAT +
Preference number: 2 (lower is better)
Translates to: KHLCKSSDLLKPLELRSLPRYLS*DFQGVD
Trigger: ATCAACTCCTTGAAAGTCTCAGGAAAGGTACCGTGG...GAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGATGACTTACAAAGATGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR GCA 90 bp CATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTAGTGTGTGCAGTATATaGCACCAATTACCATGCTGG +
Preference number: 2 (lower is better)
Translates to: HLQPQTTSSSCHTEERNTSVCSI*HQLPCW
Trigger: CCAGCATGGTAATTGGTGGCATATACTGCACACACT...AGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CAA 90 bp GGGTCCCAAGTAGGCCACGGTACCTTTCCTGAGACTTTCAAGGAGTaGATGGGTATATCATTTACAGCAGGTAGAAGTGTTAAATTTAAG +
Preference number: 2 (lower is better)
Translates to: GSQVGHGTFPETFKE*MGISFTAGRSVKFK
Trigger: CTTAAATTTAACACTTCTACCTGCTGTAAATGATATACCCATCAACTCCTTGAAAGTCTCAGGAAAGGTACCGTGGCCTACTTGGGACCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR TCA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCACCACGGTACCTTTCCTaGGACTTTCAAGGAGTTGAT +
Preference number: 2 (lower is better)
Translates to: SLLPILPYYLRHHQSVTAPRYLS*DFQGVD
Trigger: ATCAACTCCTTGAAAGTCTCAGGAAAGGTACCGTGG...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp CCAAAAGCACCCTTAAAGAGCTGTTACAAGACAATCTCACTGCAAATCCCAACAAGTCATCTGATCTTCTaGAGCCACTGGAACTACGTT +
Preference number: 2 (lower is better)
Translates to: PKAPLKSCYKTISLQIPTSHLIF*SHWNYV
Trigger: AACGTAGTTCCAGTGGCTTCAGAAGATCAGATGACT...TGTTGGGATTTGCAGTGAGATTGTCTTGTAACAGCTCTTTAAGGGTGCTTTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp CTATCGTCCTTCCCAAACTATTTTAGCCCTTGTTCATCCAACTCCTCCTCTGTATGGATGATTTATTGTTaGGAGGCTTTGTGTGGTCCT +
Preference number: 2 (lower is better)
Translates to: LSSFPNYFSPCSSNSSSVWMIYC*EALCGP
Trigger: AGGACCACACAAAGCCTCTCAACAATAAATCATCCA...TACAGAGGAGGAGTTGGATGAACAAGGGCTAAAATAGTTTGGGAAGGACGATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCAATGACTGGGTGTTTCTaGTCCACTATCAGAGAACCC +
Preference number: 2 (lower is better)
Translates to: SLLPILPYYLRHHQSVTAMTGCF*STIREP
Trigger: GGGTTCTCTGATAGTGGATCAGAAACACCCAGTCAT...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR GCA 90 bp CTATCGTCCTTCCCAAACTATTTTAGCCCTTGTTCATCCAACTCCTCCTCTGTATGCCACCAATTACCATaGTGGAATTATGTCACAGAC +
Preference number: 2 (lower is better)
Translates to: LSSFPNYFSPCSSNSSSVCHQLP*WNYVTD
Trigger: GTCTGTGACATAATTCCAGCATGGTAATTGGTGGCA...TACAGAGGAGGAGTTGGATGAACAAGGGCTAAAATAGTTTGGGAAGGACGATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR GCA 90 bp CAGAAACAAAACGAAAGTCTCAAGGCCTCAGGTTCTACTCCATTCAGATTCCAACTGTGTGAAGGGCACTaGTGGAACAGTAAGGATTTT +
Preference number: 2 (lower is better)
Translates to: QKQNESLKASGSTPFRFQLCEGH*WNSKDF
Trigger: AAAATCCTTACTGTTCCAGCAGTGCCCTTCACACAG...TTGGAATCTGAATGGAGTAGAACCTGAGGCCTTGAGACTTTCGTTTTGTTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CAA 90 bp GATCTTTGCTGGCATTACTGGCTACATGAATTTCAGCACGTTCCCTaGATATGTAAAATAGAAAAGGGACAGAAGGCACTTCCTGTAGGA +
Preference number: 2 (lower is better)
Translates to: DLCWHYWLHEFQHVP*ICKIEKGQKALPVG
Trigger: TCCTACAGGAAGTGCCTTCTGTCCCTTTTCTATTTTACATATCAAGGGAACGTGCTGAAATTCATGTAGCCAGTAATGCCAGCAAAGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp ACCCTAAGGCAGAGACTAGGACGTTTTGTACCAAGTGTGCTGAACTCATGTGTAAGACTTTCAAGGAGTTaGTGGGTATATCATTTACAG +
Preference number: 2 (lower is better)
Translates to: TLRQRLGRFVPSVLNSCVRLSRS*WVYHLQ
Trigger: CTGTAAATGATATACCCATCAACTCCTTGAAAGTCT...TACACATGAGTTCAGCACACTTGGTACAAAACGTCCTAGTCTCTGCCTTAGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp CTTAAAACGACACTACCAAACAACACATTCTTTACATTTGCACAAGTACTTGCACTCACATTTCCTGTGTaGAGGGCACTGCTGGAACAG +
Preference number: 2 (lower is better)
Translates to: LKTTLPNNTFFTFAQVLALTFPV*RALLEQ
Trigger: CTGTTCCAGCAGTGCCCTTCACACAGGAAATGTGAG...TGCAAGTACTTGTGCAAATGTAAAGAATGTGTTGTTTGGTAGTGTCGTTTTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR GCA 90 bp CTTAAAACGACACTACCAAACAACACATTCTTTACATTTGCACAAGTACTTGCAACTCAGAGATCGGCCTaGTTCTGTCTCTCGAGTGCT +
Preference number: 2 (lower is better)
Translates to: LKTTLPNNTFFTFAQVLATQRSA*FCLSSA
Trigger: AGCACTCGAGAGACAGAAGCAGGCCGATCTCTGAGT...TGCAAGTACTTGTGCAAATGTAAAGAATGTGTTGTTTGGTAGTGTCGTTTTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CCA 90 bp CATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTCATCCTGACAGGGGATaGCATTTCAGTATGTTTAAA +
Preference number: 2 (lower is better)
Translates to: HLQPQTTSSSCHTEERNTHPDRG*HFSMFK
Trigger: TTTAAACATACTGAAATGCCATCCCCTGTCAGGATG...AGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR CCA 90 bp CTATCGTCCTTCCCAAACTATTTTAGCCCTTGTTCATCCAACTCCTCCTCTGTATTACCACTTGTACCCTaGAAATTTTGGAATGTCAGC +
Preference number: 2 (lower is better)
Translates to: LSSFPNYFSPCSSNSSSVLPLVP*KFWNVS
Trigger: GCTGACATTCCAAAATTTCCAGGGTACAAGTGGTAA...TACAGAGGAGGAGTTGGATGAACAAGGGCTAAAATAGTTTGGGAAGGACGATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CAA 90 bp CAGTTCCAAGGCATAGCCACTTCCTTCATGAGTCACAGATATTCCTaGGTCCGTATTCATCTTAATATACTCATGAGCTATTTGGAACTG +
Preference number: 2 (lower is better)
Translates to: QFQGIATSFMSHRYS*VRIHLNILMSYLEL
Trigger: CAGTTCCAAATAGCTCATGAGTATATTAAGATGAATACGGACCAAGGAATATCTGTGACTCATGAAGGAAGTGGCTATGCCTTGGAACTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp CCAAAAGCACCCTTAAAGAGCTGTTACAAGACAATCTCACTGCAAATCCCAACAAATAACCAACAACATTaGACACTCACATCGCAGACA +
Preference number: 2 (lower is better)
Translates to: PKAPLKSCYKTISLQIPTNNQQH*TLTSQT
Trigger: TGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATT...TGTTGGGATTTGCAGTGAGATTGTCTTGTAACAGCTCTTTAAGGGTGCTTTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp CTATCGTCCTTCCCAAACTATTTTAGCCCTTGTTCATCCAACTCCTCCTCTGTAAGACTTTCAAGGAGTTaGTGGGTATATCATTTACAG +
Preference number: 2 (lower is better)
Translates to: LSSFPNYFSPCSSNSSSVRLSRS*WVYHLQ
Trigger: CTGTAAATGATATACCCATCAACTCCTTGAAAGTCT...TACAGAGGAGGAGTTGGATGAACAAGGGCTAAAATAGTTTGGGAAGGACGATAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp CTTAAAACGACACTACCAAACAACACATTCTTTACATTTGCACAAGTACTTGCATGCGAGTATTTCCTCTaGTCCCTTGGCACTGTAAGG +
Preference number: 2 (lower is better)
Translates to: LKTTLPNNTFFTFAQVLACEYFL*SLGTVR
Trigger: CCTTACAGTGCCAAGGGATCAGAGGAAATACTCGCA...TGCAAGTACTTGTGCAAATGTAAAGAATGTGTTGTTTGGTAGTGTCGTTTTAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR GCA 90 bp CCAAAAGCACCCTTAAAGAGCTGTTACAAGACAATCTCACTGCAAATCCCAACAATGAACGTCAGCTTATaGCAAAGAGCACCAGTAAAA +
Preference number: 2 (lower is better)
Translates to: PKAPLKSCYKTISLQIPTMNVSL*QRAPVK
Trigger: TTTTACTGGTGCTCTTTGGCATAAGCTGACGTTCAT...TGTTGGGATTTGCAGTGAGATTGTCTTGTAACAGCTCTTTAAGGGTGCTTTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CCA 90 bp CCAAAAGCACCCTTAAAGAGCTGTTACAAGACAATCTCACTGCAAATCCCAACAGTACCCTGGAAATTTTaGAATGTCAGCACTAAGTTC +
Preference number: 2 (lower is better)
Translates to: PKAPLKSCYKTISLQIPTVPWKF*NVSTKF
Trigger: GAACTTAGTGCTGACATTCCAAAATTTCCAGGGTAC...TGTTGGGATTTGCAGTGAGATTGTCTTGTAACAGCTCTTTAAGGGTGCTTTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CCA 90 bp GTTTCTGATCCACTATCAGAGAACCCTATAAAGGAAAAGTGTAGCAACCAGAGACATCCTGACAGGGGATaGCATTTCAGTATGTTTAAA +
Preference number: 2 (lower is better)
Translates to: VSDPLSENPIKEKCSNQRHPDRG*HFSMFK
Trigger: TTTAAACATACTGAAATGCCATCCCCTGTCAGGATG...TCTCTGGTTGCTACACTTTTCCTTTATAGGGTTCTCTGATAGTGGATCAGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CCA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCATGTGAAGGGCACTGCTaGAACAGTAAGGATTTTTAT +
Preference number: 2 (lower is better)
Translates to: SLLPILPYYLRHHQSVTACEGHC*NSKDFY
Trigger: ATAAAAATCCTTACTGTTCCAGCAGTGCCCTTCACA...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CCA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCAACTTCATCATCTAGGTaGCAATTTGGGGATATACTC +
Preference number: 2 (lower is better)
Translates to: SLLPILPYYLRHHQSVTATSSSR*QFGDIL
Trigger: GAGTATATCCCCAAATTGCCACCTAGATGATGAAGT...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp GTTTCTGATCCACTATCAGAGAACCCTATAAAGGAAAAGTGTAGCAACCAGAGAAGATCAAAGGAAAGATaGGAAACAAAAGACTGGGTT +
Preference number: 2 (lower is better)
Translates to: VSDPLSENPIKEKCSNQRRSKER*ETKDWV
Trigger: AACCCAGTCTTTTGTTTCTCATCTTTCCTTTGATCT...TCTCTGGTTGCTACACTTTTCCTTTATAGGGTTCTCTGATAGTGGATCAGAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR GCA 90 bp CTTAAAACGACACTACCAAACAACACATTCTTTACATTTGCACAAGTACTTGCAAGTGTGTGCAGTATATaGCACCAATTACCATGCTGG +
Preference number: 2 (lower is better)
Translates to: LKTTLPNNTFFTFAQVLASVCSI*HQLPCW
Trigger: CCAGCATGGTAATTGGTGGCATATACTGCACACACT...TGCAAGTACTTGTGCAAATGTAAAGAATGTGTTGTTTGGTAGTGTCGTTTTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR TCA 90 bp TATTCAGCAATATACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATAATAACCAACAACATTaGACACTCACATCGCAGACA +
Preference number: 2 (lower is better)
Translates to: YSAIYCLLVCAVYATNYHNNQQH*TLTSQT
Trigger: TGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATT...ATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTATATTGCTGAATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CCA 72 bp AGTGGACGTGCAAGGGAGGGGCCTAGGGACGAGGTGTaGGTACAGGAGCCTGCCTGCCCTGCAGGCAGCACA +
Preference number: 3 (lower is better)
Translates to: SGRAREGPRDEV*VQEPACPAGST
Trigger: TGTGCTGCCTGCAGGGCAGGCAGGCTCCTGTACCCACACCTCGTCCCTAGGCCCCTCCCTTGCACGTCCACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR GCA 72 bp GGAGCCTGCCTGCCCTGCAGGCAGCACAAGGCTTTTTaGAATCAGGGTCTTGGTGATGTACTGCTCACCCTG +
Preference number: 3 (lower is better)
Translates to: GACLPCRQHKAF*NQGLGDVLLTL
Trigger: CAGGGTGAGCAGTACATCACCAAGACCCTGATTGCAAAAAGCCTTGTGCTGCCTGCAGGGCAGGCAGGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CCA 72 bp CCATGTCCACAGCAGACCCACGACAGCCCAGCACGATaGTGGCATCCGGCCACAGTGTACTCATTGTTAAGG +
Preference number: 3 (lower is better)
Translates to: PCPQQTHDSPAR*WHPATVYSLLR
Trigger: CCTTAACAATGAGTACACTGTGGCCGGATGCCACCATCGTGCTGGGCTGTCGTGGGTCTGCTGTGGACATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CCA 72 bp TGTCCACAGCAGACCCACGACAGCCCAGCACGATGGTaGCATCCGGCCACAGTGTACTCATTGTTAAGGTAT +
Preference number: 3 (lower is better)
Translates to: CPQQTHDSPARW*HPATVYSLLRY
Trigger: ATACCTTAACAATGAGTACACTGTGGCCGGATGCCACCATCGTGCTGGGCTGTCGTGGGTCTGCTGTGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR GCA 72 bp TGTAGACCAGGCTGGCTTCGAACTCAGAGATCGGCCTaGTTCTGTCTCTCGAGTGCTGGGATTAAAGGCACT +
Preference number: 3 (lower is better)
Translates to: CRPGWLRTQRSA*FCLSSAGIKGT
Trigger: AGTGCCTTTAATCCCAGCACTCGAGAGACAGAAGCAGGCCGATCTCTGAGTTCGAAGCCAGCCTGGTCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CAA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCCTCTCAAAACCAGGATaGGCCATCTCCAGCCACAGA +
Preference number: 3 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSLSKPG*AISSHR
Trigger: TCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAG...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR TCA 72 bp CGCACACGGACATACTGTTTTGGGGATACATATAGCTaGGGAGTGCTCTCAGGCAGTCTCCTCAGACACAGA +
Preference number: 3 (lower is better)
Translates to: RTRTYCFGDTYS*GVLSGSLLRHR
Trigger: TCTGTGTCTGAGGAGACTGCCTGAGAGCACTCCTCAGCTATATGTATCCCCAAAACAGTATGTCCGTGTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR TCA 72 bp ATGTCAGCACTAAGTTCTGGGTCAAGGATGCATCCCTaGCAACCAGGATCCCAGAACCTTTGCCTGCTGATC +
Preference number: 3 (lower is better)
Translates to: MSALSSGSRMHP*QPGSQNLCLLI
Trigger: GATCAGCAGGCAAAGGTTCTGGGATCCTGGTTGTCAGGGATGCATCCTTGACCCAGAACTTAGTGCTGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CCA 72 bp CCAAGTGTGCTGAACTCATGTGTACAAGGACAAGGTTaGCAAAGAGCAGGTAGTGCTAGCATTCCCTGTGGG +
Preference number: 3 (lower is better)
Translates to: PSVLNSCVQGQG*QRAGSASIPCG
Trigger: CCCACAGGGAATGCTAGCACTACCTGCTCTTTGCCAACCTTGTCCTTGTACACATGAGTTCAGCACACTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR GCA 72 bp CTATGGGAAGCAACCATCTTCTTTGTCTACGGATTATaGAGGGCAACTAGCATTTGTGGTCTCCTGGGAGTG +
Preference number: 3 (lower is better)
Translates to: LWEATIFFVYGL*RATSICGLLGV
Trigger: CACTCCCAGGAGACCACAAATGCTAGTTGCCCTGCATAATCCGTAGACAAAGAAGATGGTTGCTTCCCATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CAA 90 bp CAGAAACAAAACGAAAGTCTCAAGGCCTCAGGTTCTACTCCATTCAGATTCCAACTCTCAAAACCAGGATaGGCCATCTCCAGCCACAGA +
Preference number: 3 (lower is better)
Translates to: QKQNESLKASGSTPFRFQLSKPG*AISSHR
Trigger: TCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAG...TTGGAATCTGAATGGAGTAGAACCTGAGGCCTTGAGACTTTCGTTTTGTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CAA 90 bp CTCTGGTGTGAACATATTGAGCTAGATTCTGCCCCTGACTGCACACACAGTGGGGTAATGGATGATTTATaGTTGAGAGGCTTTGTGTGG +
Preference number: 3 (lower is better)
Translates to: LWCEHIELDSAPDCTHSGVMDDL*LRGFVW
Trigger: CCACACAAAGCCTCTCAACAATAAATCATCCATTAC...CCCACTGTGTGTGCAGTCAGGGGCAGAATCTAGCTCAATATGTTCACACCAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CAA 90 bp CAGAAACAAAACGAAAGTCTCAAGGCCTCAGGTTCTACTCCATTCAGATTCCAAAGGATCCCAGAACCTTaGCCTGCTGATCTGAGAGCT +
Preference number: 3 (lower is better)
Translates to: QKQNESLKASGSTPFRFQRIPEP*PADLRA
Trigger: AGCTCTCAGATCAGCAGGCAAAGGTTCTGGGATCCT...TTGGAATCTGAATGGAGTAGAACCTGAGGCCTTGAGACTTTCGTTTTGTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CCA 72 bp GCCTTTAATTCCAGCTACTTGGGAGGCAGAGGCAGGTaGATTTCTGTGAGTTCAAGGTTAGTCTGGTCTATA +
Preference number: 3 (lower is better)
Translates to: AFNSSYLGGRGR*ISVSSRLVWSI
Trigger: TATAGACCAGACTAACCTTGAACTCACAGAAATCCACCTGCCTCTGCCTCCCAAGTAGCTGGAATTAAAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
3UTR CCA 72 bp TTTAATGTTGACTATTTGGGATTAGATAAGCTATCATaGGGCTCGTCCCTGATTCTCCCTCTCCGAGCAGCC +
Preference number: 3 (lower is better)
Translates to: FNVDYLGLDKLS*GSSLILPLRAA
Trigger: GGCTGCTCGGAGAGGGAGAATCAGGGACGAGCCCCATGATAGCTTATCTAATCCCAAATAGTCAACATTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CAA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCGAGACTTTCAAGGAGTaGATGGGTATATCATTTACA +
Preference number: 3 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSETFKE*MGISFT
Trigger: TGTAAATGATATACCCATCAACTCCTTGAAAGTCTC...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR CAA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCAGTAGGAGGCACTGTGTaGGTACTAGCAGAAAGGGAC +
Preference number: 3 (lower is better)
Translates to: SLLPILPYYLRHHQSVTAVGGTV*VLAERD
Trigger: GTCCCTTTCTGCTAGTACCAACACAGTGCCTCCTAC...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CCA 72 bp GTTAAATTTAAGGACCAAGGCTCTCAAAACCAGGATTaGCCATCTCCAGCCACAGACTACCTCTTCATCTTG +
Preference number: 3 (lower is better)
Translates to: VKFKDQGSQNQD*PSPATDYLFIL
Trigger: CAAGATGAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAGCCTTGGTCCTTAAATTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR CAA 90 bp GTCACTCATCTCACCAGCCCCAAGCCCTACATAGTAGGTGACTGTGAACCATTTTTCAGATTTTACCACTaGTACCCTGGAAATTTTGGA +
Preference number: 3 (lower is better)
Translates to: VTHLTSPKPYIVGDCEPFFRFYH*YPGNFG
Trigger: TCCAAAATTTCCAGGGTACAAGTGGTAAAATCTGAA...AAATGGTTCACAGTCACCTACTATGTAGGGCTTGGGGCTGGTGAGATGAGTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CCA 72 bp TTCATCTTGTCATACAGAGGAAAGAAACACTCTCCCTaGCCGTTTAAGAAAGCTGTCTTAGCAAGTAGGAGA +
Preference number: 3 (lower is better)
Translates to: FILSYRGKKHSP*PFKKAVLASRR
Trigger: TCTCCTACTTGCTAAGACAGCTTTCTTAAACGGCCAGGGAGAGTGTTTCTTTCCTCTGTATGACAAGATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR TCA 72 bp GCTGGAATTATGTCACAGACTAATAACCAACAACATTaGACACTCACATCGCAGACATACATGTACGCACAC +
Preference number: 3 (lower is better)
Translates to: AGIMSQTNNQQH*TLTSQTYMYAH
Trigger: GTGTGCGTACATGTATGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATTAGTCTGTGACATAATTCCAGC
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR-3UTR CAA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCAAGGAAGAAATCCAAGTaGCCTTTGCTTGTCATAATG +
Preference number: 3 (lower is better)
Translates to: SLLPILPYYLRHHQSVTARKKSK*PLLVIM
Trigger: CATTATGACAAGCAAAGGCAACTTGGATTTCTTCCT...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR-3UTR CAA 90 bp GTTTCTGATCCACTATCAGAGAACCCTATAAAGGAAAAGTGTAGCAACCAGAGAGAGACTTTCAAGGAGTaGATGGGTATATCATTTACA +
Preference number: 3 (lower is better)
Translates to: VSDPLSENPIKEKCSNQRETFKE*MGISFT
Trigger: TGTAAATGATATACCCATCAACTCCTTGAAAGTCTC...TCTCTGGTTGCTACACTTTTCCTTTATAGGGTTCTCTGATAGTGGATCAGAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR GCA 72 bp TTCAGCAATATACTGTTTACTAGTGTGTGCAGTATATaGCACCAATTACCATGCTGGAATTATGTCACAGAC +
Preference number: 3 (lower is better)
Translates to: FSNILFTSVCSI*HQLPCWNYVTD
Trigger: GTCTGTGACATAATTCCAGCATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTATATTGCTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR TCA 72 bp AAACCAGTAAGACCAAACTGTGAATATAAACAATCATaGATACTACAAAAGCCAACACCCACACCAGGAACA +
Preference number: 3 (lower is better)
Translates to: KPVRPNCEYKQS*ILQKPTPTPGT
Trigger: TGTTCCTGGTGTGGGTGTTGGCTTTTGTAGTATTCATGATTGTTTATATTCACAGTTTGGTCTTACTGGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR GCA 72 bp ACCAAACAACACATTCTTTACATTTGCACAAGTACTTaGAATAGGGTACTCATAAGGTTTTGTAGAAGTTCT +
Preference number: 3 (lower is better)
Translates to: TKQHILYICTST*NRVLIRFCRSS
Trigger: AGAACTTCTACAAAACCTTATGAGTACCCTATTGCAAGTACTTGTGCAAATGTAAAGAATGTGTTGTTTGGT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR TCA 90 bp GACCAAGGCTCTCAAAACCAGGATTGGCCATCTCCAGCCACAGACTACCTCTTCCCATCACAGCAGAAATaGCCCCTGCAGTCATCGTGG +
Preference number: 4 (lower is better)
Translates to: DQGSQNQDWPSPATDYLFPSQQK*PLQSSW
Trigger: CCACGATGACTGCAGGGGTCATTTCTGCTGTGATGG...GAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAGCCTTGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CTCTGGTGTGAACATATTGAGCTAGATTCTGCCCCTGACTGCACACACAGTGGGGTCCTTGCAGCATGGTaGCCTGGGACTCGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: LWCEHIELDSAPDCTHSGVLAAW*PGTRSS
Trigger: TGAAGAGCGAGTCCCAGGTCACCATGCTGCAAGGAC...CCCACTGTGTGTGCAGTCAGGGGCAGAATCTAGCTCAATATGTTCACACCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR TCA 90 bp GACCAAGGCTCTCAAAACCAGGATTGGCCATCTCCAGCCACAGACTACCTCTTCCAAACCCAGCCACCATaGCAAAGAGAAGGACCAGGA +
Preference number: 4 (lower is better)
Translates to: DQGSQNQDWPSPATDYLFQTQPP*QREGPG
Trigger: TCCTGGTCCTTCTCTTTGTCATGGTGGCTGGGTTTG...GAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAGCCTTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCCGTGGCAGCAACGGGTaGCTGCCTCTTACTCACTCT +
Preference number: 4 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSRGSNG*LPLTHS
Trigger: AGAGTGAGTAAGAGGCAGTCACCCGTTGCTGCCACG...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCGTCCTTGCAGCATGGTaGCCTGGGACTCGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSVLAAW*PGTRSS
Trigger: TGAAGAGCGAGTCCCAGGTCACCATGCTGCAAGGAC...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp GGAGGCCTATTCTGCCTTCAGTCTCTGCCAAGCATCTTTGTAAGTCATCTGATCACCTGTAGGAGAGAGTaGGGGAGGGGGTTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: GGLFCLQSLPSIFVSHLITCRRE*GRGLRP
Trigger: TGGCCTCAACCCCCTCCCCCACTCTCTCCTACAGGT...GATCAGATGACTTACAAAGATGCTTGGCAGAGACTGAAGGCAGAATAGGCCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp TCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCTCTGGCTTAAAGGGTCCCCCATCACAGCAGAAATaGCCCCTGCAGTCATCGTGG +
Preference number: 4 (lower is better)
Translates to: SDLLKPLELRSLSGLKGPPSQQK*PLQSSW
Trigger: CCACGATGACTGCAGGGGTCATTTCTGCTGTGATGG...GGGACCCTTTAAGCCAGAGAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp GACCAAGGCTCTCAAAACCAGGATTGGCCATCTCCAGCCACAGACTACCTCTTCCTCTTCACCCGTTGTTaGAATGCAGTCAAAGCCCAC +
Preference number: 4 (lower is better)
Translates to: DQGSQNQDWPSPATDYLFLFTRC*NAVKAH
Trigger: GTGGGCTTTGACTGCATTGCAACAACGGGTGAAGAG...GAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAGCCTTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp GACCAAGGCTCTCAAAACCAGGATTGGCCATCTCCAGCCACAGACTACCTCTTCAAGTCAGCACTGCTCTaGAGGGAATCATGGTGGAAG +
Preference number: 4 (lower is better)
Translates to: DQGSQNQDWPSPATDYLFKSALL*RESWWK
Trigger: CTTCCACCATGATTCCCTGCAGAGCAGTGCTGACTT...GAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAGCCTTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCAGCCATCCCGGGCCATaGCAAACAGAATTCGGGGTA +
Preference number: 4 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSSHPGP*QTEFGV
Trigger: TACCCCGAATTCTGTTTGCCATGGCCCGGGATGGCT...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp GACCAAGGCTCTCAAAACCAGGATTGGCCATCTCCAGCCACAGACTACCTCTTCCAAGGCTGTCCAGTGTaGCAATTTTTCTCCGGATCA +
Preference number: 4 (lower is better)
Translates to: DQGSQNQDWPSPATDYLFQGCPV*QFFSGS
Trigger: TGATCCGGAGAAAAATTGTCACACTGGACAGCCTTG...GAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAGCCTTGGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CCATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACGTCCTTGCAGCATGGTaGCCTGGGACTCGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: PSPATDYLFILSYRGKKHVLAAW*PGTRSS
Trigger: TGAAGAGCGAGTCCCAGGTCACCATGCTGCAAGGAC...GTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp AAGCTATCATGGGGCTCGTCCCTGATTCTCCCTCTCCGAGCAGCCATCAATGACGTAAGAACGGGACCATaGAGGCTACTTTTTGCTGAT +
Preference number: 4 (lower is better)
Translates to: KLSWGSSLILPLRAAINDVRTGP*RLLFAD
Trigger: ATCAGCAAAAAGTAGCCTTCATGGTCCCGTTCTTAC...GTCATTGATGGCTGCTCGGAGAGGGAGAATCAGGGACGAGCCCCATGATAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR GCA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCGCCACTCCATGCTCTTaGGACACTGGACGTACCTAT +
Preference number: 4 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSATPCS*DTGRTY
Trigger: ATAGGTACGTCCAGTGTCGCAAGAGCATGGAGTGGC...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCCACCCGTTGTTGCAATaGAGTCAAAGCCCACAAAGG +
Preference number: 4 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSHPLLQ*SQSPQR
Trigger: CCTTTGTGGGCTTTGACTGCATTGCAACAACGGGTG...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp AAGCTATCATGGGGCTCGTCCCTGATTCTCCCTCTCCGAGCAGCCATCAATGACTTGGTGATGGTCATTTaGTTGCATGGCGGACTTTTC +
Preference number: 4 (lower is better)
Translates to: KLSWGSSLILPLRAAINDLVMVI*LHGGLF
Trigger: GAAAAGTCCGCCATGCAAGCAAATGACCATCACCAA...GTCATTGATGGCTGCTCGGAGAGGGAGAATCAGGGACGAGCCCCATGATAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR GCA 90 bp GGAGGCCTATTCTGCCTTCAGTCTCTGCCAAGCATCTTTGTAAGTCATCTGATCCATCACAGCTGCCACTaGACCCGACGACAAAGTAGC +
Preference number: 4 (lower is better)
Translates to: GGLFCLQSLPSIFVSHLIHHSCH*TRRQSS
Trigger: GCTACTTTGTCGTCGGGTGCAGTGGCAGCTGTGATG...GATCAGATGACTTACAAAGATGCTTGGCAGAGACTGAAGGCAGAATAGGCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098816.10
ENSMUST00000117077.8
CDS-3UTR CCA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCTGCAGCATGGTGACCTaGGACTCGCTCTTCAAAGTC +
Preference number: 4 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSCSMVT*DSLFKV
Trigger: GACTTTGAAGAGCGAGTCCCAGGTCACCATGCTGCA...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CAA 72 bp AAGGGACAGAAGGCACTTCCTGTAGGAGGCACTGTGTaGGTACTAGCAGAAAGGGACAGTCAACGTCACTCA +
Preference number: 4 (lower is better)
Translates to: KGQKALPVGGTV*VLAERDSQRHS
Trigger: TGAGTGACGTTGACTGTCCCTTTCTGCTAGTACCAACACAGTGCCTCCTACAGGAAGTGCCTTCTGTCCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR TCA 90 bp GGAGGCCTATTCTGCCTTCAGTCTCTGCCAAGCATCTTTGTAAGTCATCTGATCCAAACCCAGCCACCATaGCAAAGAGAAGGACCAGGA +
Preference number: 4 (lower is better)
Translates to: GGLFCLQSLPSIFVSHLIQTQPP*QREGPG
Trigger: TCCTGGTCCTTCTCTTTGTCATGGTGGCTGGGTTTG...GATCAGATGACTTACAAAGATGCTTGGCAGAGACTGAAGGCAGAATAGGCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCTCCAAATGGTCAGAATaGCGGCAACGCAGAGGACAA +
Preference number: 4 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSSKWSE*RQRRGQ
Trigger: TTGTCCTCTGCGTTGCCGTCATTCTGACCATTTGGA...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCCACCCGTTGTTGCAATaGAGTCAAAGCCCACAAAGG +
Preference number: 4 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSHPLLQ*SQSPQR
Trigger: CCTTTGTGGGCTTTGACTGCATTGCAACAACGGGTG...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp GTCACTCATCTCACCAGCCCCAAGCCCTACATAGTAGGTGACTGTGAACCATTTAATAAGCACACAGGCTaGCACCAGAGAGTAGGCCAT +
Preference number: 4 (lower is better)
Translates to: VTHLTSPKPYIVGDCEPFNKHTG*HQRVGH
Trigger: ATGGCCTACTCTCTGGTGGCAGCCTGTGTGCTTATT...AAATGGTTCACAGTCACCTACTATGTAGGGCTTGGGGCTGGTGAGATGAGTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR CCA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCCTCTGCAGGGAATCATaGTGGAAGAGAGCAACCTGT +
Preference number: 4 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSLCRES*WKRATC
Trigger: ACAGGTTGCTCTCTTCCACCATGATTCCCTGCAGAG...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCCAAGGCTGTCCAGTGTaGCAATTTTTCTCCGGATCA +
Preference number: 4 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSQGCPV*QFFSGS
Trigger: TGATCCGGAGAAAAATTGTCACACTGGACAGCCTTG...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp TCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCTCTGGCTTAAAGGGTCCCCGTACCTATGACATATaGCAGGATGAGATTCCAGCC +
Preference number: 4 (lower is better)
Translates to: SDLLKPLELRSLSGLKGPRTYDI*QDEIPA
Trigger: GGCTGGAATCTCATCCTGTCATATGTCATAGGTACG...GGGACCCTTTAAGCCAGAGAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp CTATCGTCCTTCCCAAACTATTTTAGCCCTTGTTCATCCAACTCCTCCTCTGTAGGCATAAAAGCACGTTaGAGCACCAGCCAACGTCCC +
Preference number: 4 (lower is better)
Translates to: LSSFPNYFSPCSSNSSSVGIKAR*STSQRP
Trigger: GGGACGTTGGCTGGTGCTGCAACGTGCTTTTATGCC...TACAGAGGAGGAGTTGGATGAACAAGGGCTAAAATAGTTTGGGAAGGACGATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR GCA 90 bp CATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTGGCATAAAAGCACGTTaGAGCACCAGCCAACGTCCC +
Preference number: 4 (lower is better)
Translates to: HLQPQTTSSSCHTEERNTGIKAR*STSQRP
Trigger: GGGACGTTGGCTGGTGCTGCAACGTGCTTTTATGCC...AGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp ATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGCGGCATAAAAGCACGTTaGAGCACCAGCCAACGTCCC +
Preference number: 4 (lower is better)
Translates to: IADIHVRTRTYCFGDTYSGIKAR*STSQRP
Trigger: GGGACGTTGGCTGGTGCTGCAACGTGCTTTTATGCC...GCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp GGAGGCCTATTCTGCCTTCAGTCTCTGCCAAGCATCTTTGTAAGTCATCTGATCCTCTTCACCCGTTGTTaGAATGCAGTCAAAGCCCAC +
Preference number: 4 (lower is better)
Translates to: GGLFCLQSLPSIFVSHLILFTRC*NAVKAH
Trigger: GTGGGCTTTGACTGCATTGCAACAACGGGTGAAGAG...GATCAGATGACTTACAAAGATGCTTGGCAGAGACTGAAGGCAGAATAGGCCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp ATTGAACACTCACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGCATCACAGCTGCCACTaGACCCGACGACAAAGTAGC +
Preference number: 4 (lower is better)
Translates to: IEHSHRRHTCTHTDILFWHHSCH*TRRQSS
Trigger: GCTACTTTGTCGTCGGGTGCAGTGGCAGCTGTGATG...CCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGTGAGTGTTCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098816.10
ENSMUST00000117077.8
CDS-3UTR CCA 90 bp ACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATATCCAGGCTTCCAGTCTaGCAATGGCCTGGACGCCAT +
Preference number: 4 (lower is better)
Translates to: TSQTYMYAHGHTVLGIHISRLPV*QWPGRH
Trigger: ATGGCGTCCAGGCCATTGCCAGACTGGAAGCCTGGA...TATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CAA 72 bp TCGCAGACATACATGTACGCACACGGACATACTGTTTaGGGGATACATATAGCTGAGGAGTGCTCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: SQTYMYAHGHTV*GIHIAEECSQA
Trigger: TGCCTGAGAGCACTCCTCAGCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CAA 72 bp AAGGATGCATCCCTGACAACCAGGATCCCAGAACCTTaGCCTGCTGATCTGAGAGCTAATCACAATGAACGT +
Preference number: 4 (lower is better)
Translates to: KDASLTTRIPEP*PADLRANHNER
Trigger: ACGTTCATTGTGATTAGCTCTCAGATCAGCAGGCAAAGGTTCTGGGATCCTGGTTGTCAGGGATGCATCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR TCA 90 bp GGAGGCCTATTCTGCCTTCAGTCTCTGCCAAGCATCTTTGTAAGTCATCTGATCCAAGGCTGTCCAGTGTaGCAATTTTTCTCCGGATCA +
Preference number: 4 (lower is better)
Translates to: GGLFCLQSLPSIFVSHLIQGCPV*QFFSGS
Trigger: TGATCCGGAGAAAAATTGTCACACTGGACAGCCTTG...GATCAGATGACTTACAAAGATGCTTGGCAGAGACTGAAGGCAGAATAGGCCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCAAGGCCAGGGCAGCGATaGGGAAAGACACCACGATAC +
Preference number: 4 (lower is better)
Translates to: SLLPILPYYLRHHQSVTARPGQR*GKTPRY
Trigger: GTATCGTGGTGTCTTTCCTCATCGCTGCCCTGGCCT...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR TCA 90 bp TCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTCTCAAACCCAGCCACCATaGCAAAGAGAAGGACCAGGA +
Preference number: 4 (lower is better)
Translates to: SPATDYLFILSYRGKKHSQTQPP*QREGPG
Trigger: TCCTGGTCCTTCTCTTTGTCATGGTGGCTGGGTTTG...AGAGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp GTTTCTGATCCACTATCAGAGAACCCTATAAAGGAAAAGTGTAGCAACCAGAGACGTGGCAGCAACGGGTaGCTGCCTCTTACTCACTCT +
Preference number: 4 (lower is better)
Translates to: VSDPLSENPIKEKCSNQRRGSNG*LPLTHS
Trigger: AGAGTGAGTAAGAGGCAGTCACCCGTTGCTGCCACG...TCTCTGGTTGCTACACTTTTCCTTTATAGGGTTCTCTGATAGTGGATCAGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057784.15
CDS-3UTR TCA 90 bp TCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCTCTGGCTTAAAGGGTCCCGTAAGAACGGGACCATaGAGGCTACTTTTTGCTGAT +
Preference number: 4 (lower is better)
Translates to: SDLLKPLELRSLSGLKGPVRTGP*RLLFAD
Trigger: ATCAGCAAAAAGTAGCCTTCATGGTCCCGTTCTTAC...GGGACCCTTTAAGCCAGAGAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCGTAAGAACGGGACCATaGAGGCTACTTTTTGCTGAT +
Preference number: 4 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSVRTGP*RLLFAD
Trigger: ATCAGCAAAAAGTAGCCTTCATGGTCCCGTTCTTAC...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp TCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCTCTGGCTTAAAGGGTCCCCTGAGGTTTCTTTGGTaGTGGTCATTTGCTTGCATG +
Preference number: 4 (lower is better)
Translates to: SDLLKPLELRSLSGLKGPLRFLW*WSFACM
Trigger: CATGCAAGCAAATGACCATCACCAAAGAAACCTCAG...GGGACCCTTTAAGCCAGAGAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp CTATCGTCCTTCCCAAACTATTTTAGCCCTTGTTCATCCAACTCCTCCTCTGTAGCCACTCCATGCTCTTaGGACACTGGACGTACCTAT +
Preference number: 4 (lower is better)
Translates to: LSSFPNYFSPCSSNSSSVATPCS*DTGRTY
Trigger: ATAGGTACGTCCAGTGTCGCAAGAGCATGGAGTGGC...TACAGAGGAGGAGTTGGATGAACAAGGGCTAAAATAGTTTGGGAAGGACGATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR GCA 90 bp CATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTGCCACTCCATGCTCTTaGGACACTGGACGTACCTAT +
Preference number: 4 (lower is better)
Translates to: HLQPQTTSSSCHTEERNTATPCS*DTGRTY
Trigger: ATAGGTACGTCCAGTGTCGCAAGAGCATGGAGTGGC...AGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp TCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTCTGCCACTCCATGCTCTTaGGACACTGGACGTACCTAT +
Preference number: 4 (lower is better)
Translates to: SPATDYLFILSYRGKKHSATPCS*DTGRTY
Trigger: ATAGGTACGTCCAGTGTCGCAAGAGCATGGAGTGGC...AGAGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp CCAAAAGCACCCTTAAAGAGCTGTTACAAGACAATCTCACTGCAAATCCCAACAGGCATAAAAGCACGTTaGAGCACCAGCCAACGTCCC +
Preference number: 4 (lower is better)
Translates to: PKAPLKSCYKTISLQIPTGIKAR*STSQRP
Trigger: GGGACGTTGGCTGGTGCTGCAACGTGCTTTTATGCC...TGTTGGGATTTGCAGTGAGATTGTCTTGTAACAGCTCTTTAAGGGTGCTTTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR GCA 90 bp ATTGAACACTCACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGAGCAGAAATGACCCCTaGAGTCATCGTGGCAGCAAC +
Preference number: 4 (lower is better)
Translates to: IEHSHRRHTCTHTDILFWSRNDP*SHRGSN
Trigger: GTTGCTGCCACGATGACTGCAGGGGTCATTTCTGCT...CCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGTGAGTGTTCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp CCATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACAATAAGCACACAGGCTaGCACCAGAGAGTAGGCCAT +
Preference number: 4 (lower is better)
Translates to: PSPATDYLFILSYRGKKHNKHTG*HQRVGH
Trigger: ATGGCCTACTCTCTGGTGGCAGCCTGTGTGCTTATT...GTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp TCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCTCTGGCTTAAAGGGTCCCTTGGTGATGGTCATTTaGTTGCATGGCGGACTTTTC +
Preference number: 4 (lower is better)
Translates to: SDLLKPLELRSLSGLKGPLVMVI*LHGGLF
Trigger: GAAAAGTCCGCCATGCAAGCAAATGACCATCACCAA...GGGACCCTTTAAGCCAGAGAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp CTATCGTCCTTCCCAAACTATTTTAGCCCTTGTTCATCCAACTCCTCCTCTGTAACGCAGATCCAGTCTTaGGTACTCGGGCCCCAAATT +
Preference number: 4 (lower is better)
Translates to: LSSFPNYFSPCSSNSSSVTQIQS*VLGPQI
Trigger: AATTTGGGGCCCGAGTACCCAAGACTGGATCTGCGT...TACAGAGGAGGAGTTGGATGAACAAGGGCTAAAATAGTTTGGGAAGGACGATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR CCA 90 bp ATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGCAAACGCGACCGGGAGTaGACTTTTCTCATCCAGGAG +
Preference number: 4 (lower is better)
Translates to: IADIHVRTRTYCFGDTYSKRDRE*TFLIQE
Trigger: CTCCTGGATGAGAAAAGTCCACTCCCGGTCGCGTTT...GCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp GAATTATGTCACAGACTAATAACCAACAACATTGAACACTCACATCGCAGACATCCCCTGCAGTCATCGTaGCAGCAACGGGTGACTGCC +
Preference number: 4 (lower is better)
Translates to: ELCHRLITNNIEHSHRRHPLQSS*QQRVTA
Trigger: GGCAGTCACCCGTTGCTGCCACGATGACTGCAGGGG...ATGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATTAGTCTGTGACATAATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp GTTTCTGATCCACTATCAGAGAACCCTATAAAGGAAAAGTGTAGCAACCAGAGATCCAGGCTTCCAGTCTaGCAATGGCCTGGACGCCAT +
Preference number: 4 (lower is better)
Translates to: VSDPLSENPIKEKCSNQRSRLPV*QWPGRH
Trigger: ATGGCGTCCAGGCCATTGCCAGACTGGAAGCCTGGA...TCTCTGGTTGCTACACTTTTCCTTTATAGGGTTCTCTGATAGTGGATCAGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR CCA 90 bp GTCACTCATCTCACCAGCCCCAAGCCCTACATAGTAGGTGACTGTGAACCATTTTTTTTGCTGATTCTGTaGCTGCCTCCAAATGGTCAG +
Preference number: 4 (lower is better)
Translates to: VTHLTSPKPYIVGDCEPFFLLIL*LPPNGQ
Trigger: CTGACCATTTGGAGGCAGCCACAGAATCAGCAAAAA...AAATGGTTCACAGTCACCTACTATGTAGGGCTTGGGGCTGGTGAGATGAGTGAC
48% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR TCA 90 bp ATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGCACAGCTCTCCGACCGTaGCGTAAGTGTATAGATACG +
Preference number: 4 (lower is better)
Translates to: IADIHVRTRTYCFGDTYSTALRP*RKCIDT
Trigger: CGTATCTATACACTTACGTCACGGTCGGAGAGCTGT...GCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTACAGCTCTCCGACCGTaGCGTAAGTGTATAGATACG +
Preference number: 4 (lower is better)
Translates to: HLQPQTTSSSCHTEERNTTALRP*RKCIDT
Trigger: CGTATCTATACACTTACGTCACGGTCGGAGAGCTGT...AGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CCCTGGCCGTTTAAGAAAGCTGTCTTAGCAAGTAGGAGAAGGATATATGCATTACAAACCCAGCCACCATaGCAAAGAGAAGGACCAGGA +
Preference number: 4 (lower is better)
Translates to: PWPFKKAVLASRRRIYALQTQPP*QREGPG
Trigger: TCCTGGTCCTTCTCTTTGTCATGGTGGCTGGGTTTG...TAATGCATATATCCTTCTCCTACTTGCTAAGACAGCTTTCTTAAACGGCCAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp ATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGCTCCAAATGGTCAGAATaGCGGCAACGCAGAGGACAA +
Preference number: 4 (lower is better)
Translates to: IADIHVRTRTYCFGDTYSSKWSE*RQRRGQ
Trigger: TTGTCCTCTGCGTTGCCGTCATTCTGACCATTTGGA...GCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp TCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTCTTCCAAATGGTCAGAATaGCGGCAACGCAGAGGACAA +
Preference number: 4 (lower is better)
Translates to: SPATDYLFILSYRGKKHSSKWSE*RQRRGQ
Trigger: TTGTCCTCTGCGTTGCCGTCATTCTGACCATTTGGA...AGAGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCAGAAGGTGCCACTCCATaGTCTTGCGACACTGGACGT +
Preference number: 4 (lower is better)
Translates to: SLLPILPYYLRHHQSVTAEGATP*SCDTGR
Trigger: ACGTCCAGTGTCGCAAGAGCATGGAGTGGCACCTTC...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR GCA 90 bp ATTGAACACTCACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGCTCTTCACCCGTTGTTaGAATGCAGTCAAAGCCCAC +
Preference number: 4 (lower is better)
Translates to: IEHSHRRHTCTHTDILFWLFTRC*NAVKAH
Trigger: GTGGGCTTTGACTGCATTGCAACAACGGGTGAAGAG...CCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGTGAGTGTTCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp ATTGAACACTCACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGATGGGGATCGCCTTTTaGGGATTCCGAACCTCTTCA +
Preference number: 4 (lower is better)
Translates to: IEHSHRRHTCTHTDILFWMGIAF*GFRTSS
Trigger: TGAAGAGGTTCGGAATCCGCAAAAGGCGATCCCCAT...CCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGTGAGTGTTCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp CCCTGGCCGTTTAAGAAAGCTGTCTTAGCAAGTAGGAGAAGGATATATGCATTAGCAGCAACGGGTGACTaGCTCTTACTCACTCTTGCA +
Preference number: 4 (lower is better)
Translates to: PWPFKKAVLASRRRIYALAATGD*LLLTLA
Trigger: TGCAAGAGTGAGTAAGAGGCAGTCACCCGTTGCTGC...TAATGCATATATCCTTCTCCTACTTGCTAAGACAGCTTTCTTAAACGGCCAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp CATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTAGCAGCGGCAGAGTTTaGAATCTTCAAGGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: HLQPQTTSSSCHTEERNTSSGRV*NLQGCP
Trigger: TGGACAGCCTTGAAGATTCCAAACTCTGCCGCTGCT...AGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp ATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGCAGCAGCGGCAGAGTTTaGAATCTTCAAGGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: IADIHVRTRTYCFGDTYSSSGRV*NLQGCP
Trigger: TGGACAGCCTTGAAGATTCCAAACTCTGCCGCTGCT...GCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCCAGAAGGTGGTTCTCTaGCACTTGCTGATATATTTT +
Preference number: 4 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSQKVVL*HLLIYF
Trigger: AAAATATATCAGCAAGTGCCAGAGAACCACCTTCTG...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp AAGCATCTTTGTAAGTCATCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCAAACGCGACCGGGAGTaGACTTTTCTCATCCAGGAG +
Preference number: 4 (lower is better)
Translates to: KHLCKSSDLLKPLELRSLKRDRE*TFLIQE
Trigger: CTCCTGGATGAGAAAAGTCCACTCCCGGTCGCGTTT...GAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGATGACTTACAAAGATGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp CCCTGGCCGTTTAAGAAAGCTGTCTTAGCAAGTAGGAGAAGGATATATGCATTAAAACGCGACCGGGAGTaGACTTTTCTCATCCAGGAG +
Preference number: 4 (lower is better)
Translates to: PWPFKKAVLASRRRIYALKRDRE*TFLIQE
Trigger: CTCCTGGATGAGAAAAGTCCACTCCCGGTCGCGTTT...TAATGCATATATCCTTCTCCTACTTGCTAAGACAGCTTTCTTAAACGGCCAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp AAGCATCTTTGTAAGTCATCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCTGCAGCATGGTGACCTaGGACTCGCTCTTCAAAGTC +
Preference number: 4 (lower is better)
Translates to: KHLCKSSDLLKPLELRSLCSMVT*DSLFKV
Trigger: GACTTTGAAGAGCGAGTCCCAGGTCACCATGCTGCA...GAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGATGACTTACAAAGATGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp ATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGCTGCAGGGAATCATGGTaGAAGAGAGCAACCTGTAGG +
Preference number: 4 (lower is better)
Translates to: IADIHVRTRTYCFGDTYSCRESW*KRATCR
Trigger: CCTACAGGTTGCTCTCTTCCACCATGATTCCCTGCA...GCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CCCTGGCCGTTTAAGAAAGCTGTCTTAGCAAGTAGGAGAAGGATATATGCATTAACAGCTCTCCGACCGTaGCGTAAGTGTATAGATACG +
Preference number: 4 (lower is better)
Translates to: PWPFKKAVLASRRRIYALTALRP*RKCIDT
Trigger: CGTATCTATACACTTACGTCACGGTCGGAGAGCTGT...TAATGCATATATCCTTCTCCTACTTGCTAAGACAGCTTTCTTAAACGGCCAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CCAAAAGCACCCTTAAAGAGCTGTTACAAGACAATCTCACTGCAAATCCCAACAACAGCTCTCCGACCGTaGCGTAAGTGTATAGATACG +
Preference number: 4 (lower is better)
Translates to: PKAPLKSCYKTISLQIPTTALRP*RKCIDT
Trigger: CGTATCTATACACTTACGTCACGGTCGGAGAGCTGT...TGTTGGGATTTGCAGTGAGATTGTCTTGTAACAGCTCTTTAAGGGTGCTTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR TCA 90 bp TCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTCTCGTACCTATGACATATaGCAGGATGAGATTCCAGCC +
Preference number: 4 (lower is better)
Translates to: SPATDYLFILSYRGKKHSRTYDI*QDEIPA
Trigger: GGCTGGAATCTCATCCTGTCATATGTCATAGGTACG...AGAGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp GGAGGCCTATTCTGCCTTCAGTCTCTGCCAAGCATCTTTGTAAGTCATCTGATCAGTCGCATTGGTACATaGTTCCAGAGTTTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: GGLFCLQSLPSIFVSHLISRIGT*FQSFFL
Trigger: GAGAAAGAAACTCTGGAATCATGTACCAATGCGACT...GATCAGATGACTTACAAAGATGCTTGGCAGAGACTGAAGGCAGAATAGGCCTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CCAAAAGCACCCTTAAAGAGCTGTTACAAGACAATCTCACTGCAAATCCCAACATCCAAATGGTCAGAATaGCGGCAACGCAGAGGACAA +
Preference number: 4 (lower is better)
Translates to: PKAPLKSCYKTISLQIPTSKWSE*RQRRGQ
Trigger: TTGTCCTCTGCGTTGCCGTCATTCTGACCATTTGGA...TGTTGGGATTTGCAGTGAGATTGTCTTGTAACAGCTCTTTAAGGGTGCTTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR TCA 90 bp ACCCTAAGGCAGAGACTAGGACGTTTTGTACCAAGTGTGCTGAACTCATGTGTACTGAGGTTTCTTTGGTaGTGGTCATTTGCTTGCATG +
Preference number: 4 (lower is better)
Translates to: TLRQRLGRFVPSVLNSCVLRFLW*WSFACM
Trigger: CATGCAAGCAAATGACCATCACCAAAGAAACCTCAG...TACACATGAGTTCAGCACACTTGGTACAAAACGTCCTAGTCTCTGCCTTAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR TCA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCTCACTTGTCTTTTCATaGAGTATGAAAGGTAAGCTG +
Preference number: 4 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSSLVFS*SMKGKL
Trigger: CAGCTTACCTTTCATACTTCATGAAAAGACAAGTGA...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CCATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTTTGAGCTAGACATTTaGAAAGCAACCCATCCTCCG +
Preference number: 4 (lower is better)
Translates to: PSPATDYLFILSYRGKKHFELDI*KATHPP
Trigger: CGGAGGATGGGTTGCTTTTCAAATGTCTAGCTCAAA...GTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098816.10
ENSMUST00000117077.8
CDS-3UTR GCA 90 bp AAGCATCTTTGTAAGTCATCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCCACCCGTTGTTGCAATaGAGTCAAAGCCCACAAAGG +
Preference number: 4 (lower is better)
Translates to: KHLCKSSDLLKPLELRSLHPLLQ*SQSPQR
Trigger: CCTTTGTGGGCTTTGACTGCATTGCAACAACGGGTG...GAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGATGACTTACAAAGATGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp AAGCATCTTTGTAAGTCATCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCCTCTTCACCCGTTGTTaGAATGCAGTCAAAGCCCAC +
Preference number: 4 (lower is better)
Translates to: KHLCKSSDLLKPLELRSLLFTRC*NAVKAH
Trigger: GTGGGCTTTGACTGCATTGCAACAACGGGTGAAGAG...GAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGATGACTTACAAAGATGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp AACCACCACTATTTCCCCAGCCACCTAGGACATATACAGAATACATCTCTATTCATGGGGATCGCCTTTTaGGGATTCCGAACCTCTTCA +
Preference number: 4 (lower is better)
Translates to: NHHYFPSHLGHIQNTSLFMGIAF*GFRTSS
Trigger: TGAAGAGGTTCGGAATCCGCAAAAGGCGATCCCCAT...GAATAGAGATGTATTCTGTATATGTCCTAGGTGGCTGGGGAAATAGTGGTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp CAGAAACAAAACGAAAGTCTCAAGGCCTCAGGTTCTACTCCATTCAGATTCCAAAATAAGCACACAGGCTaGCACCAGAGAGTAGGCCAT +
Preference number: 4 (lower is better)
Translates to: QKQNESLKASGSTPFRFQNKHTG*HQRVGH
Trigger: ATGGCCTACTCTCTGGTGGCAGCCTGTGTGCTTATT...TTGGAATCTGAATGGAGTAGAACCTGAGGCCTTGAGACTTTCGTTTTGTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR CCA 90 bp AACCACCACTATTTCCCCAGCCACCTAGGACATATACAGAATACATCTCTATTCAGCAGCGGCAGAGTTTaGAATCTTCAAGGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: NHHYFPSHLGHIQNTSLFSSGRV*NLQGCP
Trigger: TGGACAGCCTTGAAGATTCCAAACTCTGCCGCTGCT...GAATAGAGATGTATTCTGTATATGTCCTAGGTGGCTGGGGAAATAGTGGTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCAAAACGCGACCGGGAGTaGACTTTTCTCATCCAGGAG +
Preference number: 4 (lower is better)
Translates to: SLLPILPYYLRHHQSVTAKRDRE*TFLIQE
Trigger: CTCCTGGATGAGAAAAGTCCACTCCCGGTCGCGTTT...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR CCA 90 bp GTTTCTGATCCACTATCAGAGAACCCTATAAAGGAAAAGTGTAGCAACCAGAGATGCAGCATGGTGACCTaGGACTCGCTCTTCAAAGTC +
Preference number: 4 (lower is better)
Translates to: VSDPLSENPIKEKCSNQRCSMVT*DSLFKV
Trigger: GACTTTGAAGAGCGAGTCCCAGGTCACCATGCTGCA...TCTCTGGTTGCTACACTTTTCCTTTATAGGGTTCTCTGATAGTGGATCAGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR CCA 90 bp GAATTATGTCACAGACTAATAACCAACAACATTGAACACTCACATCGCAGACATTCCAGGCTTCCAGTCTaGCAATGGCCTGGACGCCAT +
Preference number: 4 (lower is better)
Translates to: ELCHRLITNNIEHSHRRHSRLPV*QWPGRH
Trigger: ATGGCGTCCAGGCCATTGCCAGACTGGAAGCCTGGA...ATGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATTAGTCTGTGACATAATTC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp CCATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTTTTTGCTGATTCTGTaGCTGCCTCCAAATGGTCAG +
Preference number: 4 (lower is better)
Translates to: PSPATDYLFILSYRGKKHFLLIL*LPPNGQ
Trigger: CTGACCATTTGGAGGCAGCCACAGAATCAGCAAAAA...GTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp AACCACCACTATTTCCCCAGCCACCTAGGACATATACAGAATACATCTCTATTCCAAGGCTGTCCAGTGTaGCAATTTTTCTCCGGATCA +
Preference number: 4 (lower is better)
Translates to: NHHYFPSHLGHIQNTSLFQGCPV*QFFSGS
Trigger: TGATCCGGAGAAAAATTGTCACACTGGACAGCCTTG...GAATAGAGATGTATTCTGTATATGTCCTAGGTGGCTGGGGAAATAGTGGTGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CTTAAAACGACACTACCAAACAACACATTCTTTACATTTGCACAAGTACTTGCAGTCCTTGCAGCATGGTaGCCTGGGACTCGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: LKTTLPNNTFFTFAQVLAVLAAW*PGTRSS
Trigger: TGAAGAGCGAGTCCCAGGTCACCATGCTGCAAGGAC...TGCAAGTACTTGTGCAAATGTAAAGAATGTGTTGTTTGGTAGTGTCGTTTTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR TCA 90 bp CATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTGTAAGAACGGGACCATaGAGGCTACTTTTTGCTGAT +
Preference number: 4 (lower is better)
Translates to: HLQPQTTSSSCHTEERNTVRTGP*RLLFAD
Trigger: ATCAGCAAAAAGTAGCCTTCATGGTCCCGTTCTTAC...AGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp ATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGCCTGAGGTTTCTTTGGTaGTGGTCATTTGCTTGCATG +
Preference number: 4 (lower is better)
Translates to: IADIHVRTRTYCFGDTYSLRFLW*WSFACM
Trigger: CATGCAAGCAAATGACCATCACCAAAGAAACCTCAG...GCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCTCACTTGTCTTTTCATaGAGTATGAAAGGTAAGCTG +
Preference number: 4 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSSLVFS*SMKGKL
Trigger: CAGCTTACCTTTCATACTTCATGAAAAGACAAGTGA...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCACACCCGTTGTTGCAATaGAGTCAAAGCCCACAAAGG +
Preference number: 4 (lower is better)
Translates to: SLLPILPYYLRHHQSVTAHPLLQ*SQSPQR
Trigger: CCTTTGTGGGCTTTGACTGCATTGCAACAACGGGTG...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR GCA 90 bp TCATTACTTCCTATTCTTCCTTACTACCTAAGACACCACCAGAGTGTAACAGCAATGGGGATCGCCTTTTaGGGATTCCGAACCTCTTCA +
Preference number: 4 (lower is better)
Translates to: SLLPILPYYLRHHQSVTAMGIAF*GFRTSS
Trigger: TGAAGAGGTTCGGAATCCGCAAAAGGCGATCCCCAT...TGCTGTTACACTCTGGTGGTGTCTTAGGTAGTAAGGAAGAATAGGAAGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR GCA 90 bp TACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATGCTGGAATTATGAGCAGAAATGACCCCTaGAGTCATCGTGGCAGCAAC +
Preference number: 4 (lower is better)
Translates to: YCLLVCAVYATNYHAGIMSRNDP*SHRGSN
Trigger: GTTGCTGCCACGATGACTGCAGGGGTCATTTCTGCT...CATAATTCCAGCATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp TATTCAGCAATATACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATTCCAGGCTTCCAGTCTaGCAATGGCCTGGACGCCAT +
Preference number: 4 (lower is better)
Translates to: YSAIYCLLVCAVYATNYHSRLPV*QWPGRH
Trigger: ATGGCGTCCAGGCCATTGCCAGACTGGAAGCCTGGA...ATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTATATTGCTGAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp CATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTTTTTTGCTGATTCTGTaGCTGCCTCCAAATGGTCAG +
Preference number: 4 (lower is better)
Translates to: HLQPQTTSSSCHTEERNTFLLIL*LPPNGQ
Trigger: CTGACCATTTGGAGGCAGCCACAGAATCAGCAAAAA...AGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATG
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp ATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGCGGTCATTTGCTTGCATaGCGGACTTTTCTTCTGTTG +
Preference number: 4 (lower is better)
Translates to: IADIHVRTRTYCFGDTYSGHLLA*RTFLLL
Trigger: CAACAGAAGAAAAGTCCGCCATGCAAGCAAATGACC...GCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp CATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTGGTCATTTGCTTGCATaGCGGACTTTTCTTCTGTTG +
Preference number: 4 (lower is better)
Translates to: HLQPQTTSSSCHTEERNTGHLLA*RTFLLL
Trigger: CAACAGAAGAAAAGTCCGCCATGCAAGCAAATGACC...AGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp ATTGAACACTCACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGTCATTTGCTTGCATaGCGGACTTTTCTTCTGTTG +
Preference number: 4 (lower is better)
Translates to: IEHSHRRHTCTHTDILFWGHLLA*RTFLLL
Trigger: CAACAGAAGAAAAGTCCGCCATGCAAGCAAATGACC...CCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGTGAGTGTTCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CAA 72 bp GTAGGCCACGGTACCTTTCCTGAGACTTTCAAGGAGTaGATGGGTATATCATTTACAGCAGGTAGAAGTGTT +
Preference number: 4 (lower is better)
Translates to: VGHGTFPETFKE*MGISFTAGRSV
Trigger: AACACTTCTACCTGCTGTAAATGATATACCCATCAACTCCTTGAAAGTCTCAGGAAAGGTACCGTGGCCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CAA 72 bp AAACATAACAATAACAAAATAAAGCAACGAAGCAATTaGGCACTGCCAGTGGACGTGCAAGGGAGGGGCCTA +
Preference number: 4 (lower is better)
Translates to: KHNNNKIKQRSN*ALPVDVQGRGL
Trigger: TAGGCCCCTCCCTTGCACGTCCACTGGCAGTGCCAAATTGCTTCGTTGCTTTATTTTGTTATTGTTATGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR TCA 90 bp CATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTAGTCGCATTGGTACATaGTTCCAGAGTTTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: HLQPQTTSSSCHTEERNTSRIGT*FQSFFL
Trigger: GAGAAAGAAACTCTGGAATCATGTACCAATGCGACT...AGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CAGAAACAAAACGAAAGTCTCAAGGCCTCAGGTTCTACTCCATTCAGATTCCAATTTGAGCTAGACATTTaGAAAGCAACCCATCCTCCG +
Preference number: 4 (lower is better)
Translates to: QKQNESLKASGSTPFRFQFELDI*KATHPP
Trigger: CGGAGGATGGGTTGCTTTTCAAATGTCTAGCTCAAA...TTGGAATCTGAATGGAGTAGAACCTGAGGCCTTGAGACTTTCGTTTTGTTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117077.8
CDS-3UTR GCA 90 bp GAATTATGTCACAGACTAATAACCAACAACATTGAACACTCACATCGCAGACATGCAGCAACGGGTGACTaGCTCTTACTCACTCTTGCA +
Preference number: 4 (lower is better)
Translates to: ELCHRLITNNIEHSHRRHAATGD*LLLTLA
Trigger: TGCAAGAGTGAGTAAGAGGCAGTCACCCGTTGCTGC...ATGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATTAGTCTGTGACATAATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp AAGCATCTTTGTAAGTCATCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCTTGGTGATGGTCATTTaGTTGCATGGCGGACTTTTC +
Preference number: 4 (lower is better)
Translates to: KHLCKSSDLLKPLELRSLLVMVI*LHGGLF
Trigger: GAAAAGTCCGCCATGCAAGCAAATGACCATCACCAA...GAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGATGACTTACAAAGATGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp TATTCAGCAATATACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATAGCCATCCCGGGCCATaGCAAACAGAATTCGGGGTA +
Preference number: 4 (lower is better)
Translates to: YSAIYCLLVCAVYATNYHSHPGP*QTEFGV
Trigger: TACCCCGAATTCTGTTTGCCATGGCCCGGGATGGCT...ATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTATATTGCTGAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp GGAGGCCTATTCTGCCTTCAGTCTCTGCCAAGCATCTTTGTAAGTCATCTGATCTCTTCAAAGTCGCATTaGTACATGATTCCAGAGTTT +
Preference number: 4 (lower is better)
Translates to: GGLFCLQSLPSIFVSHLISSKSH*YMIPEF
Trigger: AAACTCTGGAATCATGTACCAATGCGACTTTGAAGA...GATCAGATGACTTACAAAGATGCTTGGCAGAGACTGAAGGCAGAATAGGCCTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp AAGCATCTTTGTAAGTCATCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCAGTCGCATTGGTACATaGTTCCAGAGTTTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: KHLCKSSDLLKPLELRSLSRIGT*FQSFFL
Trigger: GAGAAAGAAACTCTGGAATCATGTACCAATGCGACT...GAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGATGACTTACAAAGATGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp GAATTATGTCACAGACTAATAACCAACAACATTGAACACTCACATCGCAGACATAATAAGCACACAGGCTaGCACCAGAGAGTAGGCCAT +
Preference number: 4 (lower is better)
Translates to: ELCHRLITNNIEHSHRRHNKHTG*HQRVGH
Trigger: ATGGCCTACTCTCTGGTGGCAGCCTGTGTGCTTATT...ATGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATTAGTCTGTGACATAATTC
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp ATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGCCAGAAGGTGGTTCTCTaGCACTTGCTGATATATTTT +
Preference number: 4 (lower is better)
Translates to: IADIHVRTRTYCFGDTYSQKVVL*HLLIYF
Trigger: AAAATATATCAGCAAGTGCCAGAGAACCACCTTCTG...GCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp GAATTATGTCACAGACTAATAACCAACAACATTGAACACTCACATCGCAGACATCGTACCTATGACATATaGCAGGATGAGATTCCAGCC +
Preference number: 4 (lower is better)
Translates to: ELCHRLITNNIEHSHRRHRTYDI*QDEIPA
Trigger: GGCTGGAATCTCATCCTGTCATATGTCATAGGTACG...ATGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATTAGTCTGTGACATAATTC
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp TACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATGCTGGAATTATGCTGAGGTTTCTTTGGTaGTGGTCATTTGCTTGCATG +
Preference number: 4 (lower is better)
Translates to: YCLLVCAVYATNYHAGIMLRFLW*WSFACM
Trigger: CATGCAAGCAAATGACCATCACCAAAGAAACCTCAG...CATAATTCCAGCATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR GCA 90 bp TATTCAGCAATATACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATATGGGGATCGCCTTTTaGGGATTCCGAACCTCTTCA +
Preference number: 4 (lower is better)
Translates to: YSAIYCLLVCAVYATNYHMGIAF*GFRTSS
Trigger: TGAAGAGGTTCGGAATCCGCAAAAGGCGATCCCCAT...ATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTATATTGCTGAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp TATTCAGCAATATACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATAGCAGCGGCAGAGTTTaGAATCTTCAAGGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: YSAIYCLLVCAVYATNYHSSGRV*NLQGCP
Trigger: TGGACAGCCTTGAAGATTCCAAACTCTGCCGCTGCT...ATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTATATTGCTGAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp CCCTGGCCGTTTAAGAAAGCTGTCTTAGCAAGTAGGAGAAGGATATATGCATTACAGAAGGTGGTTCTCTaGCACTTGCTGATATATTTT +
Preference number: 4 (lower is better)
Translates to: PWPFKKAVLASRRRIYALQKVVL*HLLIYF
Trigger: AAAATATATCAGCAAGTGCCAGAGAACCACCTTCTG...TAATGCATATATCCTTCTCCTACTTGCTAAGACAGCTTTCTTAAACGGCCAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp TCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTCTTCTTCAAAGTCGCATTaGTACATGATTCCAGAGTTT +
Preference number: 4 (lower is better)
Translates to: SPATDYLFILSYRGKKHSSSKSH*YMIPEF
Trigger: AAACTCTGGAATCATGTACCAATGCGACTTTGAAGA...AGAGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp TACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATGCTGGAATTATGTTTTTGCTGATTCTGTaGCTGCCTCCAAATGGTCAG +
Preference number: 4 (lower is better)
Translates to: YCLLVCAVYATNYHAGIMFLLIL*LPPNGQ
Trigger: CTGACCATTTGGAGGCAGCCACAGAATCAGCAAAAA...CATAATTCCAGCATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp TATTCAGCAATATACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATCGTACCTATGACATATaGCAGGATGAGATTCCAGCC +
Preference number: 4 (lower is better)
Translates to: YSAIYCLLVCAVYATNYHRTYDI*QDEIPA
Trigger: GGCTGGAATCTCATCCTGTCATATGTCATAGGTACG...ATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTATATTGCTGAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp AACCACCACTATTTCCCCAGCCACCTAGGACATATACAGAATACATCTCTATTCTCACTTGTCTTTTCATaGAGTATGAAAGGTAAGCTG +
Preference number: 4 (lower is better)
Translates to: NHHYFPSHLGHIQNTSLFSLVFS*SMKGKL
Trigger: CAGCTTACCTTTCATACTTCATGAAAAGACAAGTGA...GAATAGAGATGTATTCTGTATATGTCCTAGGTGGCTGGGGAAATAGTGGTGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp CCCTGGCCGTTTAAGAAAGCTGTCTTAGCAAGTAGGAGAAGGATATATGCATTATCACTTGTCTTTTCATaGAGTATGAAAGGTAAGCTG +
Preference number: 4 (lower is better)
Translates to: PWPFKKAVLASRRRIYALSLVFS*SMKGKL
Trigger: CAGCTTACCTTTCATACTTCATGAAAAGACAAGTGA...TAATGCATATATCCTTCTCCTACTTGCTAAGACAGCTTTCTTAAACGGCCAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp ACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATATCTTCAAAGTCGCATTaGTACATGATTCCAGAGTTT +
Preference number: 4 (lower is better)
Translates to: TSQTYMYAHGHTVLGIHISSKSH*YMIPEF
Trigger: AAACTCTGGAATCATGTACCAATGCGACTTTGAAGA...TATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
3UTR CAA 72 bp GAAAGAAAGCAGCGAAGGAAGAAATCCAAGTTGCCTTaGCTTGTCATAATGAATAGGATGTGTAAGCATCTG +
Preference number: 4 (lower is better)
Translates to: ERKQRRKKSKLP*LVIMNRMCKHL
Trigger: CAGATGCTTACACATCCTATTCATTATGACAAGCAAAGGCAACTTGGATTTCTTCCTTCGCTGCTTTCTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CAA 72 bp TGGCATTACTGGCTACATGAATTTCAGCACGTTCCCTaGATATGTAAAATAGAAAAGGGACAGAAGGCACTT +
Preference number: 4 (lower is better)
Translates to: WHYWLHEFQHVP*ICKIEKGQKAL
Trigger: AAGTGCCTTCTGTCCCTTTTCTATTTTACATATCAAGGGAACGTGCTGAAATTCATGTAGCCAGTAATGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
3UTR CAA 72 bp GGCATAGCCACTTCCTTCATGAGTCACAGATATTCCTaGGTCCGTATTCATCTTAATATACTCATGAGCTAT +
Preference number: 4 (lower is better)
Translates to: GIATSFMSHRYS*VRIHLNILMSY
Trigger: ATAGCTCATGAGTATATTAAGATGAATACGGACCAAGGAATATCTGTGACTCATGAAGGAAGTGGCTATGCC
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR GCA 90 bp TATTCAGCAATATACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATTTGGTGATGGTCATTTaGTTGCATGGCGGACTTTTC +
Preference number: 4 (lower is better)
Translates to: YSAIYCLLVCAVYATNYHLVMVI*LHGGLF
Trigger: GAAAAGTCCGCCATGCAAGCAAATGACCATCACCAA...ATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTATATTGCTGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp TATTCAGCAATATACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATGGTCATTTGCTTGCATaGCGGACTTTTCTTCTGTTG +
Preference number: 4 (lower is better)
Translates to: YSAIYCLLVCAVYATNYHGHLLA*RTFLLL
Trigger: CAACAGAAGAAAAGTCCGCCATGCAAGCAAATGACC...ATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTATATTGCTGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR TCA 90 bp TATTCAGCAATATACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATAGTCGCATTGGTACATaGTTCCAGAGTTTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: YSAIYCLLVCAVYATNYHSRIGT*FQSFFL
Trigger: GAGAAAGAAACTCTGGAATCATGTACCAATGCGACT...ATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTATATTGCTGAATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp GAATTATGTCACAGACTAATAACCAACAACATTGAACACTCACATCGCAGACATCAGAAGGTGGTTCTCTaGCACTTGCTGATATATTTT +
Preference number: 4 (lower is better)
Translates to: ELCHRLITNNIEHSHRRHQKVVL*HLLIYF
Trigger: AAAATATATCAGCAAGTGCCAGAGAACCACCTTCTG...ATGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATTAGTCTGTGACATAATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CCA 90 bp TACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATGCTGGAATTATGTCTTCAAAGTCGCATTaGTACATGATTCCAGAGTTT +
Preference number: 4 (lower is better)
Translates to: YCLLVCAVYATNYHAGIMSSKSH*YMIPEF
Trigger: AAACTCTGGAATCATGTACCAATGCGACTTTGAAGA...CATAATTCCAGCATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS TCA 90 bp GGACGTAGACCCCAGCGCCCAGAGTGCTTCCAACCCCCAAAGCGATaGGGTCCACGGTGGTTAAGCAGCGGCAGAGTTTGGAATCTTCAA +
Preference number: 5 (lower is better)
Translates to: GRRPQRPECFQPPKR*GPRWLSSGRVWNLQ
Trigger: TTGAAGATTCCAAACTCTGCCGCTGCTTAACCACCGTGGACCTCATCGCTTTGGGGGTTGGAAGCACTCTGGGCGCTGGGGTCTACGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CCA 90 bp GGATCAGACATCGCGCGAAAGTCAGCACTGCTCTGCAGGGAATCATaGTGGAAGAGAGCAACCTGTAGGAGAGAGTGGGGGAGGGGGTTG +
Preference number: 5 (lower is better)
Translates to: GSDIARKSALLCRES*WKRATCRREWGRGL
Trigger: CAACCCCCTCCCCCACTCTCTCCTACAGGTTGCTCTCTTCCACCATGATTCCCTGCAGAGCAGTGCTGACTTTCGCGCGATGTCTGATCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000118432.2
CDS TCA 90 bp CGCAGAGGGAGCCTGCCGAGACAACATATTTGGCGGGGCTCCATCTaGCATACTCAAACGCGACCGGGAGTGGACTTTTCTCATCCAGGA +
Preference number: 5 (lower is better)
Translates to: RRGSLPRQHIWRGSI*HTQTRPGVDFSHPG
Trigger: TCCTGGATGAGAAAAGTCCACTCCCGGTCGCGTTTGAGTATGTCAGATGGAGCCCCGCCAAATATGTTGTCTCGGCAGGCTCCCTCTGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS GCA 90 bp AGGGCAGAGGGGCTGAAGAGGGTTCGTAGGCTGAAACCCTGTCCTTaGAGCATGGTGACCTGGGACTCGCTCTTCAAAGTCGCATTGGTA +
Preference number: 5 (lower is better)
Translates to: RAEGLKRVRRLKPCP*SMVTWDSLFKVALV
Trigger: TACCAATGCGACTTTGAAGAGCGAGTCCCAGGTCACCATGCTGCAAGGACAGGGTTTCAGCCTACGAACCCTCTTCAGCCCCTCTGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CCA 90 bp AGGGCGAGAAGAGCCAGGCTCCAGGCTTCCAGTCTGGCAATGGCCTaGACGCCATACGTGGTTAGAATACTCAAGCCCAGGATGAGGAAA +
Preference number: 5 (lower is better)
Translates to: RARRARLQASSLAMA*TPYVVRILKPRMRK
Trigger: TTTCCTCATCCTGGGCTTGAGTATTCTAACCACGTATGGCGTCCAGGCCATTGCCAGACTGGAAGCCTGGAGCCTGGCTCTTCTCGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS TCA 90 bp CAATGGCCTGGACGCCATACGTGGTTAGAATACTCAAGCCCAGGATaGGGAAAGCCAGGAATCCCACCAGAAAGCTCACAAGGGAAGCCG +
Preference number: 5 (lower is better)
Translates to: QWPGRHTWLEYSSPG*GKPGIPPESSQGKP
Trigger: CGGCTTCCCTTGTGAGCTTTCTGGTGGGATTCCTGGCTTTCCTCATCCTGGGCTTGAGTATTCTAACCACGTATGGCGTCCAGGCCATTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS TCA 90 bp AGGCTACTTTTTGCTGATTCTGTGGCTGCCTCCAAATGGTCAGAATaGCGGCAACGCAGAGGACAAGGAACAGGGCGAGAAGAGCCAGGC +
Preference number: 5 (lower is better)
Translates to: RLLFADSVAASKWSE*RQRRGQGTGREEPG
Trigger: GCCTGGCTCTTCTCGCCCTGTTCCTTGTCCTCTGCGTTGCCGTCATTCTGACCATTTGGAGGCAGCCACAGAATCAGCAAAAAGTAGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS TCA 90 bp GCCGGCAGAAACGGTAAGAACGGGACCATGAAGGCTACTTTTTGCTaGTTCTGTGGCTGCCTCCAAATGGTCAGAATGACGGCAACGCAG +
Preference number: 5 (lower is better)
Translates to: AGRNGKNGTMKATFC*FCGCLQMVRMTATQ
Trigger: CTGCGTTGCCGTCATTCTGACCATTTGGAGGCAGCCACAGAATCAGCAAAAAGTAGCCTTCATGGTCCCGTTCTTACCGTTTCTGCCGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCTACGCAGATCCAGTCTaGGGTACTCGGGCCCCAAAT +
Preference number: 5 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSYADPV*GTRAPN
Trigger: ATTTGGGGCCCGAGTACCCAAGACTGGATCTGCGTA...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS GCA 90 bp CAATTTTTCTCCGGATCAGACATCGCGCGAAAGTCAGCACTGCTCTaGAGGGAATCATGGTGGAAGAGAGCAACCTGTAGGAGAGAGTGG +
Preference number: 5 (lower is better)
Translates to: QFFSGSDIARKSALL*RESWWKRATCRREW
Trigger: CCACTCTCTCCTACAGGTTGCTCTCTTCCACCATGATTCCCTGCAGAGCAGTGCTGACTTTCGCGCGATGTCTGATCCGGAGAAAAATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCTGCCACTCCATGCTCTaGCGACACTGGACGTACCTA +
Preference number: 5 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSCHSML*RHWTYL
Trigger: TAGGTACGTCCAGTGTCGCAAGAGCATGGAGTGGCA...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp GACCAAGGCTCTCAAAACCAGGATTGGCCATCTCCAGCCACAGACTACCTCTTCGAACCTCTTCACCCGTaGTTGCAATGCAGTCAAAGC +
Preference number: 5 (lower is better)
Translates to: DQGSQNQDWPSPATDYLFEPLHP*LQCSQS
Trigger: GCTTTGACTGCATTGCAACAACGGGTGAAGAGGTTC...GAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAGCCTTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS GCA 90 bp TGTGACAATTTTTCTCCGGATCAGACATCGCGCGAAAGTCAGCACTaGTCTGCAGGGAATCATGGTGGAAGAGAGCAACCTGTAGGAGAG +
Preference number: 5 (lower is better)
Translates to: CDNFSPDQTSRESQH*SAGNHGGREQPVGE
Trigger: CTCTCCTACAGGTTGCTCTCTTCCACCATGATTCCCTGCAGAGCAGTGCTGACTTTCGCGCGATGTCTGATCCGGAGAAAAATTGTCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118432.2
CDS CCA 90 bp AAGAGGGTTCGTAGGCTGAAACCCTGTCCTTGCAGCATGGTGACCTaGGACTCGCTCTTCAAAGTCGCATTGGTACATGATTCCAGAGTT +
Preference number: 5 (lower is better)
Translates to: KRVRRLKPCPCSMVT*DSLFKVALVHDSRV
Trigger: AACTCTGGAATCATGTACCAATGCGACTTTGAAGAGCGAGTCCCAGGTCACCATGCTGCAAGGACAGGGTTTCAGCCTACGAACCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCGAACCTCTTCACCCGTaGTTGCAATGCAGTCAAAGC +
Preference number: 5 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSEPLHP*LQCSQS
Trigger: GCTTTGACTGCATTGCAACAACGGGTGAAGAGGTTC...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp GACCAAGGCTCTCAAAACCAGGATTGGCCATCTCCAGCCACAGACTACCTCTTCCATGAAGGCTACTTTTaGCTGATTCTGTGGCTGCCT +
Preference number: 5 (lower is better)
Translates to: DQGSQNQDWPSPATDYLFHEGYF*LILWLP
Trigger: AGGCAGCCACAGAATCAGCAAAAAGTAGCCTTCATG...GAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAGCCTTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS TCA 90 bp TGGTTAAGCAGCGGCAGAGTTTGGAATCTTCAAGGCTGTCCAGTGTaGCAATTTTTCTCCGGATCAGACATCGCGCGAAAGTCAGCACTG +
Preference number: 5 (lower is better)
Translates to: WLSSGRVWNLQGCPV*QFFSGSDIARKSAL
Trigger: CAGTGCTGACTTTCGCGCGATGTCTGATCCGGAGAAAAATTGTCACACTGGACAGCCTTGAAGATTCCAAACTCTGCCGCTGCTTAACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp CCATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACAGGCATAAAAGCACGTaGCAGCACCAGCCAACGTCC +
Preference number: 5 (lower is better)
Translates to: PSPATDYLFILSYRGKKHRHKST*QHQPTS
Trigger: GGACGTTGGCTGGTGCTGCAACGTGCTTTTATGCCT...GTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp GGAGGCCTATTCTGCCTTCAGTCTCTGCCAAGCATCTTTGTAAGTCATCTGATCGAACCTCTTCACCCGTaGTTGCAATGCAGTCAAAGC +
Preference number: 5 (lower is better)
Translates to: GGLFCLQSLPSIFVSHLIEPLHP*LQCSQS
Trigger: GCTTTGACTGCATTGCAACAACGGGTGAAGAGGTTC...GATCAGATGACTTACAAAGATGCTTGGCAGAGACTGAAGGCAGAATAGGCCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp CATCTGAAGAGAAGCTGTCTGGAGGAGGAAGTACAAGTTAGGCAAGCCATGTCCCATGAAGGCTACTTTTaGCTGATTCTGTGGCTGCCT +
Preference number: 5 (lower is better)
Translates to: HLKRSCLEEEVQVRQAMSHEGYF*LILWLP
Trigger: AGGCAGCCACAGAATCAGCAAAAAGTAGCCTTCATG...GGACATGGCTTGCCTAACTTGTACTTCCTCCTCCAGACAGCTTCTCTTCAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp AAATCCTTCAACTGGGCTCAAGCGCCCTGTGAGACTGGACTAAGGGCATTTTCCTTTGGTGATGGTCATTaGCTTGCATGGCGGACTTTT +
Preference number: 5 (lower is better)
Translates to: KSFNWAQAPCETGLRAFSFGDGH*LAWRTF
Trigger: AAAAGTCCGCCATGCAAGCAAATGACCATCACCAAA...GGAAAATGCCCTTAGTCCAGTCTCACAGGGCGCTTGAGCCCAGTTGAAGGATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp GACCAAGGCTCTCAAAACCAGGATTGGCCATCTCCAGCCACAGACTACCTCTTCAGATTACACGAGGCATaGGGAAAATGGATCCAAGAA +
Preference number: 5 (lower is better)
Translates to: DQGSQNQDWPSPATDYLFRLHEA*GKWIQE
Trigger: TTCTTGGATCCATTTTCCCAATGCCTCGTGTAATCT...GAAGAGGTAGTCTGTGGCTGGAGATGGCCAATCCTGGTTTTGAGAGCCTTGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098816.10
ENSMUST00000117077.8
CDS-3UTR CAA 90 bp TCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTCTAAGCAGCGGCAGAGTTaGGAATCTTCAAGGCTGTCC +
Preference number: 5 (lower is better)
Translates to: SPATDYLFILSYRGKKHSKQRQS*ESSRLS
Trigger: GGACAGCCTTGAAGATTCCAAACTCTGCCGCTGCTT...AGAGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp CATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTAAGCAGCGGCAGAGTTaGGAATCTTCAAGGCTGTCC +
Preference number: 5 (lower is better)
Translates to: HLQPQTTSSSCHTEERNTKQRQS*ESSRLS
Trigger: GGACAGCCTTGAAGATTCCAAACTCTGCCGCTGCTT...AGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp AACCACCACTATTTCCCCAGCCACCTAGGACATATACAGAATACATCTCTATTCTGCCACTCCATGCTCTaGCGACACTGGACGTACCTA +
Preference number: 5 (lower is better)
Translates to: NHHYFPSHLGHIQNTSLFCHSML*RHWTYL
Trigger: TAGGTACGTCCAGTGTCGCAAGAGCATGGAGTGGCA...GAATAGAGATGTATTCTGTATATGTCCTAGGTGGCTGGGGAAATAGTGGTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp CCCTGGCCGTTTAAGAAAGCTGTCTTAGCAAGTAGGAGAAGGATATATGCATTATGCCACTCCATGCTCTaGCGACACTGGACGTACCTA +
Preference number: 5 (lower is better)
Translates to: PWPFKKAVLASRRRIYALCHSML*RHWTYL
Trigger: TAGGTACGTCCAGTGTCGCAAGAGCATGGAGTGGCA...TAATGCATATATCCTTCTCCTACTTGCTAAGACAGCTTTCTTAAACGGCCAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp ACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATATGCCACTCCATGCTCTaGCGACACTGGACGTACCTA +
Preference number: 5 (lower is better)
Translates to: TSQTYMYAHGHTVLGIHICHSML*RHWTYL
Trigger: TAGGTACGTCCAGTGTCGCAAGAGCATGGAGTGGCA...TATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp AAGCATCTTTGTAAGTCATCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCAGGCATAAAAGCACGTaGCAGCACCAGCCAACGTCC +
Preference number: 5 (lower is better)
Translates to: KHLCKSSDLLKPLELRSLRHKST*QHQPTS
Trigger: GGACGTTGGCTGGTGCTGCAACGTGCTTTTATGCCT...GAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGATGACTTACAAAGATGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp AACCACCACTATTTCCCCAGCCACCTAGGACATATACAGAATACATCTCTATTCAGGCATAAAAGCACGTaGCAGCACCAGCCAACGTCC +
Preference number: 5 (lower is better)
Translates to: NHHYFPSHLGHIQNTSLFRHKST*QHQPTS
Trigger: GGACGTTGGCTGGTGCTGCAACGTGCTTTTATGCCT...GAATAGAGATGTATTCTGTATATGTCCTAGGTGGCTGGGGAAATAGTGGTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp CTCTGGTGTGAACATATTGAGCTAGATTCTGCCCCTGACTGCACACACAGTGGGTCTTCTGTTGCTGCATaGATGTTGTCTGAAAAGGCA +
Preference number: 5 (lower is better)
Translates to: LWCEHIELDSAPDCTHSGSSVAA*MLSEKA
Trigger: TGCCTTTTCAGACAACATCAATGCAGCAACAGAAGA...CCCACTGTGTGTGCAGTCAGGGGCAGAATCTAGCTCAATATGTTCACACCAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR CAA 90 bp TCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCTCTGGCTTAAAGGGTCCCTTTGGTGATGGTCATTaGCTTGCATGGCGGACTTTT +
Preference number: 5 (lower is better)
Translates to: SDLLKPLELRSLSGLKGPFGDGH*LAWRTF
Trigger: AAAAGTCCGCCATGCAAGCAAATGACCATCACCAAA...GGGACCCTTTAAGCCAGAGAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS TCA 90 bp GATGGTCATTTGCTTGCATGGCGGACTTTTCTTCTGTTGCTGCATTaGTGTTGTCTGAAAAGGCATCCTCATCGTCTTCTTCATCCCTGG +
Preference number: 5 (lower is better)
Translates to: DGHLLAWRTFLLLLH*CCLKRHPHRLLHPW
Trigger: CCAGGGATGAAGAAGACGATGAGGATGCCTTTTCAGACAACATCAATGCAGCAACAGAAGAAAAGTCCGCCATGCAAGCAAATGACCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp AAGCATCTTTGTAAGTCATCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCAAGCAGCGGCAGAGTTaGGAATCTTCAAGGCTGTCC +
Preference number: 5 (lower is better)
Translates to: KHLCKSSDLLKPLELRSLKQRQS*ESSRLS
Trigger: GGACAGCCTTGAAGATTCCAAACTCTGCCGCTGCTT...GAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGATGACTTACAAAGATGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp TCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTCTGAACCTCTTCACCCGTaGTTGCAATGCAGTCAAAGC +
Preference number: 5 (lower is better)
Translates to: SPATDYLFILSYRGKKHSEPLHP*LQCSQS
Trigger: GCTTTGACTGCATTGCAACAACGGGTGAAGAGGTTC...AGAGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp AAGCATCTTTGTAAGTCATCTGATCTTCTGAAGCCACTGGAACTACGTTCACTCAACCCAGAAGACTTGTaGATAAGGCGCAGAGGGAGC +
Preference number: 5 (lower is better)
Translates to: KHLCKSSDLLKPLELRSLNPEDL*IRRRGS
Trigger: GCTCCCTCTGCGCCTTATCAACAAGTCTTCTGGGTT...GAGTGAACGTAGTTCCAGTGGCTTCAGAAGATCAGATGACTTACAAAGATGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp ACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAAACCCAGAAGACTTGTaGATAAGGCGCAGAGGGAGC +
Preference number: 5 (lower is better)
Translates to: TSQTYMYAHGHTVLGIHINPEDL*IRRRGS
Trigger: GCTCCCTCTGCGCCTTATCAACAAGTCTTCTGGGTT...TATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp CCATCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACGTGATGGTCATTTGCTaGCATGGCGGACTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: PSPATDYLFILSYRGKKHVMVIC*HGGLFF
Trigger: GAAGAAAAGTCCGCCATGCAAGCAAATGACCATCAC...GTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp GAATTATGTCACAGACTAATAACCAACAACATTGAACACTCACATCGCAGACATTACGCAGATCCAGTCTaGGGTACTCGGGCCCCAAAT +
Preference number: 5 (lower is better)
Translates to: ELCHRLITNNIEHSHRRHYADPV*GTRAPN
Trigger: ATTTGGGGCCCGAGTACCCAAGACTGGATCTGCGTA...ATGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATTAGTCTGTGACATAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp ACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATACATGAAGGCTACTTTTaGCTGATTCTGTGGCTGCCT +
Preference number: 5 (lower is better)
Translates to: TSQTYMYAHGHTVLGIHIHEGYF*LILWLP
Trigger: AGGCAGCCACAGAATCAGCAAAAAGTAGCCTTCATG...TATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp AACCACCACTATTTCCCCAGCCACCTAGGACATATACAGAATACATCTCTATTCCATGAAGGCTACTTTTaGCTGATTCTGTGGCTGCCT +
Preference number: 5 (lower is better)
Translates to: NHHYFPSHLGHIQNTSLFHEGYF*LILWLP
Trigger: AGGCAGCCACAGAATCAGCAAAAAGTAGCCTTCATG...GAATAGAGATGTATTCTGTATATGTCCTAGGTGGCTGGGGAAATAGTGGTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp ATTGAACACTCACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGTTGCTGCATTGATGTaGTCTGAAAAGGCATCCTCA +
Preference number: 5 (lower is better)
Translates to: IEHSHRRHTCTHTDILFWVAALM*SEKASS
Trigger: TGAGGATGCCTTTTCAGACAACATCAATGCAGCAAC...CCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGTGAGTGTTCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp ATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGCGTTGCTGCATTGATGTaGTCTGAAAAGGCATCCTCA +
Preference number: 5 (lower is better)
Translates to: IADIHVRTRTYCFGDTYSVAALM*SEKASS
Trigger: TGAGGATGCCTTTTCAGACAACATCAATGCAGCAAC...GCTATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp ACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGGGATACATATAGTGATGGTCATTTGCTaGCATGGCGGACTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: TSQTYMYAHGHTVLGIHIVMVIC*HGGLFF
Trigger: GAAGAAAAGTCCGCCATGCAAGCAAATGACCATCAC...TATATGTATCCCCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp ATTGAACACTCACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGTTTGGTGATGGTCATTaGCTTGCATGGCGGACTTTT +
Preference number: 5 (lower is better)
Translates to: IEHSHRRHTCTHTDILFWFGDGH*LAWRTF
Trigger: AAAAGTCCGCCATGCAAGCAAATGACCATCACCAAA...CCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGTGAGTGTTCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp CTTAAAACGACACTACCAAACAACACATTCTTTACATTTGCACAAGTACTTGCAAGGCATAAAAGCACGTaGCAGCACCAGCCAACGTCC +
Preference number: 5 (lower is better)
Translates to: LKTTLPNNTFFTFAQVLARHKST*QHQPTS
Trigger: GGACGTTGGCTGGTGCTGCAACGTGCTTTTATGCCT...TGCAAGTACTTGTGCAAATGTAAAGAATGTGTTGTTTGGTAGTGTCGTTTTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR CAA 90 bp TCTCCAGCCACAGACTACCTCTTCATCTTGTCATACAGAGGAAAGAAACACTCTTCTTCTGTTGCTGCATaGATGTTGTCTGAAAAGGCA +
Preference number: 5 (lower is better)
Translates to: SPATDYLFILSYRGKKHSSSVAA*MLSEKA
Trigger: TGCCTTTTCAGACAACATCAATGCAGCAACAGAAGA...AGAGTGTTTCTTTCCTCTGTATGACAAGATGAAGAGGTAGTCTGTGGCTGGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp ATTGAACACTCACATCGCAGACATACATGTACGCACACGGACATACTGTTTTGGTCTTCTGTTGCTGCATaGATGTTGTCTGAAAAGGCA +
Preference number: 5 (lower is better)
Translates to: IEHSHRRHTCTHTDILFWSSVAA*MLSEKA
Trigger: TGCCTTTTCAGACAACATCAATGCAGCAACAGAAGA...CCAAAACAGTATGTCCGTGTGCGTACATGTATGTCTGCGATGTGAGTGTTCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp CCAAAAGCACCCTTAAAGAGCTGTTACAAGACAATCTCACTGCAAATCCCAACATTTGGTGATGGTCATTaGCTTGCATGGCGGACTTTT +
Preference number: 5 (lower is better)
Translates to: PKAPLKSCYKTISLQIPTFGDGH*LAWRTF
Trigger: AAAAGTCCGCCATGCAAGCAAATGACCATCACCAAA...TGTTGGGATTTGCAGTGAGATTGTCTTGTAACAGCTCTTTAAGGGTGCTTTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR CAA 90 bp CCAAAAGCACCCTTAAAGAGCTGTTACAAGACAATCTCACTGCAAATCCCAACATCTTCTGTTGCTGCATaGATGTTGTCTGAAAAGGCA +
Preference number: 5 (lower is better)
Translates to: PKAPLKSCYKTISLQIPTSSVAA*MLSEKA
Trigger: TGCCTTTTCAGACAACATCAATGCAGCAACAGAAGA...TGTTGGGATTTGCAGTGAGATTGTCTTGTAACAGCTCTTTAAGGGTGCTTTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS-3UTR CAA 90 bp GAATTATGTCACAGACTAATAACCAACAACATTGAACACTCACATCGCAGACATGTTGCTGCATTGATGTaGTCTGAAAAGGCATCCTCA +
Preference number: 5 (lower is better)
Translates to: ELCHRLITNNIEHSHRRHVAALM*SEKASS
Trigger: TGAGGATGCCTTTTCAGACAACATCAATGCAGCAAC...ATGTCTGCGATGTGAGTGTTCAATGTTGTTGGTTATTAGTCTGTGACATAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp TATTCAGCAATATACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATGTGATGGTCATTTGCTaGCATGGCGGACTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: YSAIYCLLVCAVYATNYHVMVIC*HGGLFF
Trigger: GAAGAAAAGTCCGCCATGCAAGCAAATGACCATCAC...ATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTATATTGCTGAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS-3UTR CAA 90 bp TACTGTTTACTAGTGTGTGCAGTATATGCCACCAATTACCATGCTGGAATTATGAGATTACACGAGGCATaGGGAAAATGGATCCAAGAA +
Preference number: 5 (lower is better)
Translates to: YCLLVCAVYATNYHAGIMRLHEA*GKWIQE
Trigger: TTCTTGGATCCATTTTCCCAATGCCTCGTGTAATCT...CATAATTCCAGCATGGTAATTGGTGGCATATACTGCACACACTAGTAAACAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098816.10
ENSMUST00000117077.8
CDS-3UTR CAA 90 bp CTTAAAACGACACTACCAAACAACACATTCTTTACATTTGCACAAGTACTTGCAGTTGCTGCATTGATGTaGTCTGAAAAGGCATCCTCA +
Preference number: 5 (lower is better)
Translates to: LKTTLPNNTFFTFAQVLAVAALM*SEKASS
Trigger: TGAGGATGCCTTTTCAGACAACATCAATGCAGCAAC...TGCAAGTACTTGTGCAAATGTAAAGAATGTGTTGTTTGGTAGTGTCGTTTTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000117077.8
CDS TCA 72 bp CCCCAGCGCCCAGAGTGCTTCCAACCCCCAAAGCGATaGGGTCCACGGTGGTTAAGCAGCGGCAGAGTTTGG +
Preference number: 6 (lower is better)
Translates to: PQRPECFQPPKR*GPRWLSSGRVW
Trigger: CCAAACTCTGCCGCTGCTTAACCACCGTGGACCTCATCGCTTTGGGGGTTGGAAGCACTCTGGGCGCTGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CCA 72 bp GGAAAGACACCACGATACTCGGGCCAGAATCGGCTTTaGCGACTTCCCCAGCCAGGACGTAGACCCCAGCGC +
Preference number: 6 (lower is better)
Translates to: GKTPRYSGQNRL*RLPQPGRRPQR
Trigger: GCGCTGGGGTCTACGTCCTGGCTGGGGAAGTCGCCAAAGCCGATTCTGGCCCGAGTATCGTGGTGTCTTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS GCA 72 bp GGGCTGAAGAGGGTTCGTAGGCTGAAACCCTGTCCTTaGAGCATGGTGACCTGGGACTCGCTCTTCAAAGTC +
Preference number: 6 (lower is better)
Translates to: GLKRVRRLKPCP*SMVTWDSLFKV
Trigger: GACTTTGAAGAGCGAGTCCCAGGTCACCATGCTGCAAGGACAGGGTTTCAGCCTACGAACCCTCTTCAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CCA 72 bp ATCGCGCGAAAGTCAGCACTGCTCTGCAGGGAATCATaGTGGAAGAGAGCAACCTGTAGGAGAGAGTGGGGG +
Preference number: 6 (lower is better)
Translates to: IARKSALLCRES*WKRATCRREWG
Trigger: CCCCCACTCTCTCCTACAGGTTGCTCTCTTCCACCATGATTCCCTGCAGAGCAGTGCTGACTTTCGCGCGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118432.2
CDS CAA 72 bp GATAAGGCGCAGAGGGAGCCTGCCGAGACAACATATTaGGCGGGGCTCCATCTGACATACTCAAACGCGACC +
Preference number: 6 (lower is better)
Translates to: DKAQREPAETTY*AGLHLTYSNAT
Trigger: GGTCGCGTTTGAGTATGTCAGATGGAGCCCCGCCAAATATGTTGTCTCGGCAGGCTCCCTCTGCGCCTTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CAA 90 bp AGACTTGTTGATAAGGCGCAGAGGGAGCCTGCCGAGACAACATATTaGGCGGGGCTCCATCTGACATACTCAAACGCGACCGGGAGTGGA +
Preference number: 6 (lower is better)
Translates to: RLVDKAQREPAETTY*AGLHLTYSNATGSG
Trigger: TCCACTCCCGGTCGCGTTTGAGTATGTCAGATGGAGCCCCGCCAAATATGTTGTCTCGGCAGGCTCCCTCTGCGCCTTATCAACAAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS GCA 72 bp TCCGGATCAGACATCGCGCGAAAGTCAGCACTGCTCTaGAGGGAATCATGGTGGAAGAGAGCAACCTGTAGG +
Preference number: 6 (lower is better)
Translates to: SGSDIARKSALL*RESWWKRATCR
Trigger: CCTACAGGTTGCTCTCTTCCACCATGATTCCCTGCAGAGCAGTGCTGACTTTCGCGCGATGTCTGATCCGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118432.2
CDS TCA 72 bp AGCCTGCCGAGACAACATATTTGGCGGGGCTCCATCTaGCATACTCAAACGCGACCGGGAGTGGACTTTTCT +
Preference number: 6 (lower is better)
Translates to: SLPRQHIWRGSI*HTQTRPGVDFS
Trigger: AGAAAAGTCCACTCCCGGTCGCGTTTGAGTATGTCAGATGGAGCCCCGCCAAATATGTTGTCTCGGCAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS GCA 72 bp CAAGCCAGGTTGGTACCTGAGAATAAGCACACAGGCTaGCACCAGAGAGTAGGCCATGAGGGTGCCAATAGA +
Preference number: 6 (lower is better)
Translates to: QARLVPENKHTG*HQRVGHEGANR
Trigger: TCTATTGGCACCCTCATGGCCTACTCTCTGGTGGCAGCCTGTGTGCTTATTCTCAGGTACCAACCTGGCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS TCA 72 bp TTTGCTGATTCTGTGGCTGCCTCCAAATGGTCAGAATaGCGGCAACGCAGAGGACAAGGAACAGGGCGAGAA +
Preference number: 6 (lower is better)
Translates to: FADSVAASKWSE*RQRRGQGTGRE
Trigger: TTCTCGCCCTGTTCCTTGTCCTCTGCGTTGCCGTCATTCTGACCATTTGGAGGCAGCCACAGAATCAGCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS GCA 72 bp TTTTCTCCGGATCAGACATCGCGCGAAAGTCAGCACTaGTCTGCAGGGAATCATGGTGGAAGAGAGCAACCT +
Preference number: 6 (lower is better)
Translates to: FSPDQTSRESQH*SAGNHGGREQP
Trigger: AGGTTGCTCTCTTCCACCATGATTCCCTGCAGAGCAGTGCTGACTTTCGCGCGATGTCTGATCCGGAGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118432.2
CDS CCA 72 bp GGGGCTCCATCTGACATACTCAAACGCGACCGGGAGTaGACTTTTCTCATCCAGGAGGTAGTAAGGCATCAT +
Preference number: 6 (lower is better)
Translates to: GAPSDILKRDRE*TFLIQEVVRHH
Trigger: ATGATGCCTTACTACCTCCTGGATGAGAAAAGTCCACTCCCGGTCGCGTTTGAGTATGTCAGATGGAGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CCA 72 bp CGTAGGCTGAAACCCTGTCCTTGCAGCATGGTGACCTaGGACTCGCTCTTCAAAGTCGCATTGGTACATGAT +
Preference number: 6 (lower is better)
Translates to: RRLKPCPCSMVT*DSLFKVALVHD
Trigger: ATCATGTACCAATGCGACTTTGAAGAGCGAGTCCCAGGTCACCATGCTGCAAGGACAGGGTTTCAGCCTACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS TCA 72 bp GGACGCCATACGTGGTTAGAATACTCAAGCCCAGGATaGGGAAAGCCAGGAATCCCACCAGAAAGCTCACAA +
Preference number: 6 (lower is better)
Translates to: GRHTWLEYSSPG*GKPGIPPESSQ
Trigger: TTGTGAGCTTTCTGGTGGGATTCCTGGCTTTCCTCATCCTGGGCTTGAGTATTCTAACCACGTATGGCGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CCA 72 bp GAACGGGACCATGAAGGCTACTTTTTGCTGATTCTGTaGCTGCCTCCAAATGGTCAGAATGACGGCAACGCA +
Preference number: 6 (lower is better)
Translates to: ERDHEGYFLLIL*LPPNGQNDGNA
Trigger: TGCGTTGCCGTCATTCTGACCATTTGGAGGCAGCCACAGAATCAGCAAAAAGTAGCCTTCATGGTCCCGTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CAA 90 bp TGTCCTTGCAGCATGGTGACCTGGGACTCGCTCTTCAAAGTCGCATaGGTACATGATTCCAGAGTTTCTTTCTCAGGGGTGTATTTGGGC +
Preference number: 6 (lower is better)
Translates to: CPCSMVTWDSLFKVA*VHDSRVSFSGVYLG
Trigger: GCCCAAATACACCCCTGAGAAAGAAACTCTGGAATCATGTACCAATGCGACTTTGAAGAGCGAGTCCCAGGTCACCATGCTGCAAGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CAA 72 bp AGCATGGTGACCTGGGACTCGCTCTTCAAAGTCGCATaGGTACATGATTCCAGAGTTTCTTTCTCAGGGGTG +
Preference number: 6 (lower is better)
Translates to: SMVTWDSLFKVA*VHDSRVSFSGV
Trigger: CACCCCTGAGAAAGAAACTCTGGAATCATGTACCAATGCGACTTTGAAGAGCGAGTCCCAGGTCACCATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CAA 72 bp TTACACGAGGCATTGGGAAAATGGATCCAAGAAGACTaGTTGATAAGGCGCAGAGGGAGCCTGCCGAGACAA +
Preference number: 6 (lower is better)
Translates to: LHEALGKWIQED*LIRRRGSLPRQ
Trigger: TTGTCTCGGCAGGCTCCCTCTGCGCCTTATCAACAAGTCTTCTTGGATCCATTTTCCCAATGCCTCGTGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098816.10
ENSMUST00000117077.8
CDS TCA 72 bp AGAAATGACCCCTGCAGTCATCGTGGCAGCAACGGGTaGCTGCCTCTTACTCACTCTTGCAAGAAATCTAAA +
Preference number: 6 (lower is better)
Translates to: RNDPCSHRGSNG*LPLTHSCKKSK
Trigger: TTTAGATTTCTTGCAAGAGTGAGTAAGAGGCAGTCACCCGTTGCTGCCACGATGACTGCAGGGGTCATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057784.15
ENSMUST00000118432.2
CDS TCA 72 bp GGCGGACTTTTCTTCTGTTGCTGCATTGATGTTGTCTaGAAAGGCATCCTCATCGTCTTCTTCATCCCTGGG +
Preference number: 6 (lower is better)
Translates to: GGLFFCCCIDVV*KGILIVFFIPG
Trigger: CCCAGGGATGAAGAAGACGATGAGGATGCCTTTTCAGACAACATCAATGCAGCAACAGAAGAAAAGTCCGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CAA 72 bp TGCATGGCGGACTTTTCTTCTGTTGCTGCATTGATGTaGTCTGAAAAGGCATCCTCATCGTCTTCTTCATCC +
Preference number: 6 (lower is better)
Translates to: CMADFSSVAALM*SEKASSSSSSS
Trigger: GGATGAAGAAGACGATGAGGATGCCTTTTCAGACAACATCAATGCAGCAACAGAAGAAAAGTCCGCCATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS TCA 72 bp TTGCTTGCATGGCGGACTTTTCTTCTGTTGCTGCATTaGTGTTGTCTGAAAAGGCATCCTCATCGTCTTCTT +
Preference number: 6 (lower is better)
Translates to: LLAWRTFLLLLH*CCLKRHPHRLL
Trigger: AAGAAGACGATGAGGATGCCTTTTCAGACAACATCAATGCAGCAACAGAAGAAAAGTCCGCCATGCAAGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CAA 72 bp TTTGCTTGCATGGCGGACTTTTCTTCTGTTGCTGCATaGATGTTGTCTGAAAAGGCATCCTCATCGTCTTCT +
Preference number: 6 (lower is better)
Translates to: FACMADFSSVAA*MLSEKASSSSS
Trigger: AGAAGACGATGAGGATGCCTTTTCAGACAACATCAATGCAGCAACAGAAGAAAAGTCCGCCATGCAAGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS TCA 72 bp GTAGCAATTACTGGTGTCTTCGTTTTGGAATTGATTTaGGCTAGACATTTGAAAAGCAACCCATCCTCCGCC +
Preference number: 6 (lower is better)
Translates to: VAITGVFVLELI*ARHLKSNPSSA
Trigger: GGCGGAGGATGGGTTGCTTTTCAAATGTCTAGCTCAAATCAATTCCAAAACGAAGACACCAGTAATTGCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098816.10
ENSMUST00000117077.8
CDS CAA 90 bp GTTCCGTTCTCAGAAGGTGGTTCTCTGGCACTTGCTGATATATTTTaGAGAAACTCTTCACTGATCTTCCAGTTAGCCACATTTCCTTTC +
Preference number: 6 (lower is better)
Translates to: VPFSEGGSLALADIF*RNSSLIFQLATFPF
Trigger: GAAAGGAAATGTGGCTAACTGGAAGATCAGTGAAGAGTTTCTCAAAAATATATCAGCAAGTGCCAGAGAACCACCTTCTGAGAACGGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2
CDS CAA 72 bp TCAGAAGGTGGTTCTCTGGCACTTGCTGATATATTTTaGAGAAACTCTTCACTGATCTTCCAGTTAGCCACA +
Preference number: 6 (lower is better)
Translates to: SEGGSLALADIF*RNSSLIFQLAT
Trigger: TGTGGCTAACTGGAAGATCAGTGAAGAGTTTCTCAAAAATATATCAGCAAGTGCCAGAGAACCACCTTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057784.15
ENSMUST00000098816.10
ENSMUST00000117077.8
ENSMUST00000118432.2