Pregenerated sensors for SLC6A14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031089Ensembl transcript IDs: ENSMUST00000033414.8
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATGTGCACCATGAGCATGCAGTATCATAGAGGTCAGAAGAGGACATCGGGTTTCCTTGGTGCTGAGAATTaGACCTACATCCTCTGTGAT | + |
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Preference number: 2 (lower is better) Translates to: MCTMSMQYHRGQKRTSGFLGAEN*TYILCD Trigger: ATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAG...GAAACCCGATGTCCTCTTCTGACCTCTATGATACTGCATGCTCATGGTGCACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| 3UTR CAA 90 bp | ACATCGGGTTTCATGGAACTAGAGTTAAAGATGGTATTAGTAACCTaGGTGCTGAGAATTGAACCTACATCCTCTGTGATAGCCATTTAT | + |
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Preference number: 2 (lower is better) Translates to: TSGFMELELKMVLVT*VLRIEPTSSVIAIY Trigger: ATAAATGGCTATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAGGTTACTAATACCATCTTTAACTCTAGTTCCATGAAACCCGATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| 3UTR-3UTR CAA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCAATGGTATTAGTAACCTaGGTGCTGAGAATTGAACCT | + |
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Preference number: 3 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSMVLVT*VLRIEP Trigger: AGGTTCAATTCTCAGCACCAAGGTTACTAATACCAT...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CCA 90 bp | ATGTGCACCATGAGCATGCAGTATCATAGAGGTCAGAAGAGGACATCGGGTTTCAAGCACCTCCGCCATTaGTGTAGGTCAGATATGGGA | + |
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Preference number: 4 (lower is better) Translates to: MCTMSMQYHRGQKRTSGFKHLRH*CRSDMG Trigger: TCCCATATCTGACCTACACCAATGGCGGAGGTGCTT...GAAACCCGATGTCCTCTTCTGACCTCTATGATACTGCATGCTCATGGTGCACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR TCA 90 bp | ATGTGCACCATGAGCATGCAGTATCATAGAGGTCAGAAGAGGACATCGGGTTTCTTCATCCATTCCACTTaGCCTCTGAAGTGTCACTTT | + |
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Preference number: 4 (lower is better) Translates to: MCTMSMQYHRGQKRTSGFFIHST*PLKCHF Trigger: AAAGTGACACTTCAGAGGTCAAGTGGAATGGATGAA...GAAACCCGATGTCCTCTTCTGACCTCTATGATACTGCATGCTCATGGTGCACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR GCA 90 bp | ATGTGCACCATGAGCATGCAGTATCATAGAGGTCAGAAGAGGACATCGGGTTTCGCTACAGTTTTCGTCTaGCCAAGAAGAACAATTTGC | + |
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Preference number: 4 (lower is better) Translates to: MCTMSMQYHRGQKRTSGFATVFV*PRRTIC Trigger: GCAAATTGTTCTTCTTGGGCAGACGAAAACTGTAGC...GAAACCCGATGTCCTCTTCTGACCTCTATGATACTGCATGCTCATGGTGCACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CCA 90 bp | ACCTTGGTGCTGAGAATTGAACCTACATCCTCTGTGATAGCCATTTATCTTGTCACCCCAGTTCGAAGCTaGTCTACAGCAGCTTATGAT | + |
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Preference number: 4 (lower is better) Translates to: TLVLRIEPTSSVIAIYLVTPVRS*STAAYD Trigger: ATCATAAGCTGCTGTAGACCAGCTTCGAACTGGGGT...GACAAGATAAATGGCTATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR TCA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCAGTGCTGCTCCAACTATaGGCCAAGCCAGAAGAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSVLLQL*AKPEEG Trigger: GCCTTCTTCTGGCTTGGCTCATAGTTGGAGCAGCAC...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR GCA 90 bp | ACCTTGGTGCTGAGAATTGAACCTACATCCTCTGTGATAGCCATTTATCTTGTCTCCTTTAAACAGTGCTaGTCCAACTATGAGCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: TLVLRIEPTSSVIAIYLVSFKQC*SNYEPS Trigger: GCTTGGCTCATAGTTGGAGCAGCACTGTTTAAAGGA...GACAAGATAAATGGCTATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR GCA 90 bp | ATGTGCACCATGAGCATGCAGTATCATAGAGGTCAGAAGAGGACATCGGGTTTCCAATGTAATATGAAATaGCTTTTGATGCACCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: MCTMSMQYHRGQKRTSGFQCNMK*LLMHPP Trigger: TGGAGGGTGCATCAAAAGGCATTTCATATTACATTG...GAAACCCGATGTCCTCTTCTGACCTCTATGATACTGCATGCTCATGGTGCACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR TCA 90 bp | ACCTTGGTGCTGAGAATTGAACCTACATCCTCTGTGATAGCCATTTATCTTGTCCAGTTACCACGTTCCTaGTTTTCATCATTTTCACCA | + |
|
Preference number: 4 (lower is better) Translates to: TLVLRIEPTSSVIAIYLVQLPRS*FSSFSP Trigger: TGGTGAAAATGATGAAAATCAGGAACGTGGTAACTG...GACAAGATAAATGGCTATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR GCA 90 bp | AGAGGTCAGAAGAGGACATCGGGTTTCATGGAACTAGAGTTAAAGATGGTATTACATAAACATCTCTCCTaGCCCTATGCTCACATTACA | + |
|
Preference number: 4 (lower is better) Translates to: RGQKRTSGFMELELKMVLHKHLS*PYAHIT Trigger: TGTAATGTGAGCATAGGGGCAGGAGAGATGTTTATG...TAATACCATCTTTAACTCTAGTTCCATGAAACCCGATGTCCTCTTCTGACCTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR GCA 90 bp | ACCTTGGTGCTGAGAATTGAACCTACATCCTCTGTGATAGCCATTTATCTTGTCCCTCATGCGTTTCATTaGTTTGGGAAACAAATCTTG | + |
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Preference number: 4 (lower is better) Translates to: TLVLRIEPTSSVIAIYLVPHAFH*FGKQIL Trigger: CAAGATTTGTTTCCCAAAGCAATGAAACGCATGAGG...GACAAGATAAATGGCTATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR GCA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCAGTGGTCAGTCTCCTTTaGAGGTTCAGCCATGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSVVSLL*RFSHVS Trigger: AGAGACATGGCTGAACCTGCAAAGGAGACTGACCAC...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CCA 90 bp | ACCTTGGTGCTGAGAATTGAACCTACATCCTCTGTGATAGCCATTTATCTTGTCTCATTTTCACCAACATaGAAGTTCTCGGATGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: TLVLRIEPTSSVIAIYLVSFSPT*KFSDEA Trigger: AGCTTCATCCGAGAACTTCCATGTTGGTGAAAATGA...GACAAGATAAATGGCTATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CCA 90 bp | AGAGGTCAGAAGAGGACATCGGGTTTCATGGAACTAGAGTTAAAGATGGTATTATCCCCAGTCAGGATATaGAATATCAGCATAATCAGG | + |
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Preference number: 4 (lower is better) Translates to: RGQKRTSGFMELELKMVLSPVRI*NISIIR Trigger: CCTGATTATGCTGATATTCCATATCCTGACTGGGGA...TAATACCATCTTTAACTCTAGTTCCATGAAACCCGATGTCCTCTTCTGACCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR TCA 90 bp | AGAGGTCAGAAGAGGACATCGGGTTTCATGGAACTAGAGTTAAAGATGGTATTAGGAAAGAAGATAATCTaGCTTTTTGGACCAGTTACC | + |
|
Preference number: 4 (lower is better) Translates to: RGQKRTSGFMELELKMVLGKKII*LFGPVT Trigger: GGTAACTGGTCCAAAAAGTCAGATTATCTTCTTTCC...TAATACCATCTTTAACTCTAGTTCCATGAAACCCGATGTCCTCTTCTGACCTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR TCA 90 bp | ACCTTGGTGCTGAGAATTGAACCTACATCCTCTGTGATAGCCATTTATCTTGTCGGCTGTAGGCAATTATaGCATTATAATAGATTGCCA | + |
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Preference number: 4 (lower is better) Translates to: TLVLRIEPTSSVIAIYLVGCRQL*HYNRLP Trigger: TGGCAATCTATTATAATGTCATAATTGCCTACAGCC...GACAAGATAAATGGCTATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR GCA 90 bp | AGAGGTCAGAAGAGGACATCGGGTTTCATGGAACTAGAGTTAAAGATGGTATTAAATCCAGATGATTCCTaGAATTTCCAAGATAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: RGQKRTSGFMELELKMVLNPDDS*NFQDSS Trigger: GCTGCTATCTTGGAAATTGCAGGAATCATCTGGATT...TAATACCATCTTTAACTCTAGTTCCATGAAACCCGATGTCCTCTTCTGACCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CCA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCAGGTGTAGGTCAGATATaGGAATCTCCACACATTGCC | + |
|
Preference number: 4 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSGVGQI*ESPHIA Trigger: GGCAATGTGTGGAGATTCCCATATCTGACCTACACC...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CCA 90 bp | AGAGGTCAGAAGAGGACATCGGGTTTCATGGAACTAGAGTTAAAGATGGTATTAACAGCCAGTTACTATTaGTGTTCTGCTACAGTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: RGQKRTSGFMELELKMVLTASYY*CSATVF Trigger: GAAAACTGTAGCAGAACACCAATAGTAACTGGCTGT...TAATACCATCTTTAACTCTAGTTCCATGAAACCCGATGTCCTCTTCTGACCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR TCA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCAATGGAAGTTCTCGGATaGAGCTGTCACTTTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSMEVLG*SCHFLL Trigger: AAGGAGAAAGTGACAGCTTCATCCGAGAACTTCCAT...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR TCA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCACAGCCAATGCTAGCATaGTTGCATAGGGTATCAAGA | + |
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Preference number: 4 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSQPMLA*LHRVSR Trigger: TCTTGATACCCTATGCAATCATGCTAGCATTGGCTG...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR TCA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCAATATCAGGACCATCGTaGTTCCCACACCTTGAAACA | + |
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Preference number: 4 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSISGPS*FPHLET Trigger: TGTTTCAAGGTGTGGGAATCACGATGGTCCTGATAT...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| 3UTR CAA 72 bp | TTCATGGAACTAGAGTTAAAGATGGTATTAGTAACCTaGGTGCTGAGAATTGAACCTACATCCTCTGTGATA | + |
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Preference number: 4 (lower is better) Translates to: FMELELKMVLVT*VLRIEPTSSVI Trigger: TATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAGGTTACTAATACCATCTTTAACTCTAGTTCCATGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR TCA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCAAGCAAATTGTCCCAGTaGACATTCCAGAAAGAACAA | + |
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Preference number: 4 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSSKLSQ*TFQKEQ Trigger: TTGTTCTTTCTGGAATGTTCACTGGGACAATTTGCT...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR TCA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCATCTTTTCCAGATATATaGGCCATGTGTCCCAGAATA | + |
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Preference number: 4 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSSFPDI*AMCPRI Trigger: TATTCTGGGACACATGGCTCATATATCTGGAAAAGA...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CCA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCAGATAATCTGACTTTTTaGACCAGTTACCACGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSDNLTF*TSYHVP Trigger: AGGAACGTGGTAACTGGTCCAAAAAGTCAGATTATC...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CCA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCATGCGTTTCATTGCTTTaGGAAACAAATCTTGAAATG | + |
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Preference number: 4 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSCVSLL*ETNLEM Trigger: CATTTCAAGATTTGTTTCCCAAAGCAATGAAACGCA...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS GCA 90 bp | CTCCTGCCCCTATGCTCACATTACAGCCAGTTACTATTGGTGTTCTaGTACAGTTTTCGTCTGCCCAAGAAGAACAATTTGCCCACGGCA | + |
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Preference number: 5 (lower is better) Translates to: LLPLCSHYSQLLLVF*YSFRLPKKNNLPTA Trigger: TGCCGTGGGCAAATTGTTCTTCTTGGGCAGACGAAAACTGTAGCAGAACACCAATAGTAACTGGCTGTAATGTGAGCATAGGGGCAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CAA 90 bp | ATGTGCACCATGAGCATGCAGTATCATAGAGGTCAGAAGAGGACATCGGGTTTCCTGTTCACTGGGAAGTaGTCCTGGCCGAAAAACTTC | + |
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Preference number: 5 (lower is better) Translates to: MCTMSMQYHRGQKRTSGFLFTGK*SWPKNF Trigger: GAAGTTTTTCGGCCAGGACAACTTCCCAGTGAACAG...GAAACCCGATGTCCTCTTCTGACCTCTATGATACTGCATGCTCATGGTGCACAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CAA 90 bp | ATGTGCACCATGAGCATGCAGTATCATAGAGGTCAGAAGAGGACATCGGGTTTCTTCAAGCAGGTGAGATaGTTGGTATTTACCCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: MCTMSMQYHRGQKRTSGFFKQVR*LVFTQL Trigger: AAGCTGGGTAAATACCAACAATCTCACCTGCTTGAA...GAAACCCGATGTCCTCTTCTGACCTCTATGATACTGCATGCTCATGGTGCACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS CCA 90 bp | CTGAAGTGTCACTTTATCCCAATACTGTTCACTGGGAAGTTGTCCTaGCCGAAAAACTTCACTACCATTCAAGCAGGTGAGATTGTTGGT | + |
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Preference number: 5 (lower is better) Translates to: LKCHFIPILFTGKLS*PKNFTTIQAGEIVG Trigger: ACCAACAATCTCACCTGCTTGAATGGTAGTGAAGTTTTTCGGCCAGGACAACTTCCCAGTGAACAGTATTGGGATAAAGTGACACTTCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CAA 90 bp | ATGTGCACCATGAGCATGCAGTATCATAGAGGTCAGAAGAGGACATCGGGTTTCTACAGCCAGTTACTATaGGTGTTCTGCTACAGTTTT | + |
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Preference number: 5 (lower is better) Translates to: MCTMSMQYHRGQKRTSGFYSQLL*VFCYSF Trigger: AAAACTGTAGCAGAACACCAATAGTAACTGGCTGTA...GAAACCCGATGTCCTCTTCTGACCTCTATGATACTGCATGCTCATGGTGCACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS TCA 90 bp | ACGTTCCTGATTTTCATCATTTTCACCAACATGGAAGTTCTCGGATaGAGCTGTCACTTTCTCCTTCTGTCTGCACTTGAAGAAGTTCGG | + |
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Preference number: 5 (lower is better) Translates to: TFLIFIIFTNMEVLG*SCHFLLLSALEEVR Trigger: CCGAACTTCTTCAAGTGCAGACAGAAGGAGAAAGTGACAGCTTCATCCGAGAACTTCCATGTTGGTGAAAATGATGAAAATCAGGAACGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CAA 90 bp | ACCTTGGTGCTGAGAATTGAACCTACATCCTCTGTGATAGCCATTTATCTTGTCCCCAAGAAGAACAATTaGCCCACGGCAATACACTTT | + |
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Preference number: 5 (lower is better) Translates to: TLVLRIEPTSSVIAIYLVPKKNN*PTAIHF Trigger: AAAGTGTATTGCCGTGGGCAAATTGTTCTTCTTGGG...GACAAGATAAATGGCTATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CAA 90 bp | TTTCATTTCCTAGGTTTATCACTGTCTGGATACCTGTTCCTCATTTTTGTATCACGTGGTCAGTCTCCTTaGCAGGTTCAGCCATGTCTC | + |
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Preference number: 5 (lower is better) Translates to: FHFLGLSLSGYLFLIFVSRGQSP*QVQPCL Trigger: GAGACATGGCTGAACCTGCAAAGGAGACTGACCACG...TGATACAAAAATGAGGAACAGGTATCCAGACAGTGATAAACCTAGGAAATGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS GCA 90 bp | CACATTACAGCCAGTTACTATTGGTGTTCTGCTACAGTTTTCGTCTaGCCAAGAAGAACAATTTGCCCACGGCAATACACTTTGAAAAGA | + |
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Preference number: 5 (lower is better) Translates to: HITASYYWCSATVFV*PRRTICPRQYTLKR Trigger: TCTTTTCAAAGTGTATTGCCGTGGGCAAATTGTTCTTCTTGGGCAGACGAAAACTGTAGCAGAACACCAATAGTAACTGGCTGTAATGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CAA 90 bp | ACCTTGGTGCTGAGAATTGAACCTACATCCTCTGTGATAGCCATTTATCTTGTCCCCTCATGCGTTTCATaGCTTTGGGAAACAAATCTT | + |
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Preference number: 5 (lower is better) Translates to: TLVLRIEPTSSVIAIYLVPSCVS*LWETNL Trigger: AAGATTTGTTTCCCAAAGCAATGAAACGCATGAGGG...GACAAGATAAATGGCTATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS GCA 90 bp | GAGATTGTTGGTATTTACCCAGCTTATATTCATAAACATCTCTCCTaGCCCTATGCTCACATTACAGCCAGTTACTATTGGTGTTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: EIVGIYPAYIHKHLS*PYAHITASYYWCSA Trigger: AGCAGAACACCAATAGTAACTGGCTGTAATGTGAGCATAGGGGCAGGAGAGATGTTTATGAATATAAGCTGGGTAAATACCAACAATCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS-3UTR CAA 90 bp | ACCTTGGTGCTGAGAATTGAACCTACATCCTCTGTGATAGCCATTTATCTTGTCGTAAAATATACCACCTaGCCAGAGGATTTGATTCCT | + |
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Preference number: 5 (lower is better) Translates to: TLVLRIEPTSSVIAIYLVVKYTT*PEDLIP Trigger: AGGAATCAAATCCTCTGGCAAGGTGGTATATTTTAC...GACAAGATAAATGGCTATCACAGAGGATGTAGGTTCAATTCTCAGCACCAAGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS TCA 90 bp | CACTTTGAAAAGAAGCAAACAAGTAGTAAAGGCTGTAGGCAATTATaGCATTATAATAGATTGCCACAAAAACGGATATCAGGACCATCG | + |
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Preference number: 5 (lower is better) Translates to: HFEKKQTSSKGCRQL*HYNRLPQKRISGPS Trigger: CGATGGTCCTGATATCCGTTTTTGTGGCAATCTATTATAATGTCATAATTGCCTACAGCCTTTACTACTTGTTTGCTTCTTTTCAAAGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS TCA 72 bp | CCAGAAAGAACAAAGGCAGACCAGCCAATGCTAGCATaGTTGCATAGGGTATCAAGAAAGCACCTCCGCCAT | + |
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Preference number: 6 (lower is better) Translates to: PERTKADQPMLA*LHRVSRKHLRH Trigger: ATGGCGGAGGTGCTTTCTTGATACCCTATGCAATCATGCTAGCATTGGCTGGTCTGCCTTTGTTCTTTCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS GCA 72 bp | GCCAGTTACTATTGGTGTTCTGCTACAGTTTTCGTCTaGCCAAGAAGAACAATTTGCCCACGGCAATACACT | + |
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Preference number: 6 (lower is better) Translates to: ASYYWCSATVFV*PRRTICPRQYT Trigger: AGTGTATTGCCGTGGGCAAATTGTTCTTCTTGGGCAGACGAAAACTGTAGCAGAACACCAATAGTAACTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS CCA 72 bp | CACTTTATCCCAATACTGTTCACTGGGAAGTTGTCCTaGCCGAAAAACTTCACTACCATTCAAGCAGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: HFIPILFTGKLS*PKNFTTIQAGE Trigger: CTCACCTGCTTGAATGGTAGTGAAGTTTTTCGGCCAGGACAACTTCCCAGTGAACAGTATTGGGATAAAGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS CCA 72 bp | TCTGGTTTTGTACTGCCACTAATAGTAGGTATTTCGTaGTCAGTCTCCTTTGCAGGTTCAGCCATGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: SGFVLPLIVGIS*SVSFAGSAMSL Trigger: CAGAGACATGGCTGAACCTGCAAAGGAGACTGACCACGAAATACCTACTATTAGTGGCAGTACAAAACCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS TCA 72 bp | AATAGATTGCCACAAAAACGGATATCAGGACCATCGTaGTTCCCACACCTTGAAACAGTGGCAAAATCCTCC | + |
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Preference number: 6 (lower is better) Translates to: NRLPQKRISGPS*FPHLETVAKSS Trigger: GGAGGATTTTGCCACTGTTTCAAGGTGTGGGAATCACGATGGTCCTGATATCCGTTTTTGTGGCAATCTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS CAA 90 bp | AGTTGTCCTGGCCGAAAAACTTCACTACCATTCAAGCAGGTGAGATaGTTGGTATTTACCCAGCTTATATTCATAAACATCTCTCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: SCPGRKTSLPFKQVR*LVFTQLIFINISPA Trigger: GGCAGGAGAGATGTTTATGAATATAAGCTGGGTAAATACCAACAATCTCACCTGCTTGAATGGTAGTGAAGTTTTTCGGCCAGGACAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS TCA 72 bp | ATACCACACAACAACTCCAGTTTCATCCATTCCACTTaGCCTCTGAAGTGTCACTTTATCCCAATACTGTTC | + |
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Preference number: 6 (lower is better) Translates to: IPHNNSSFIHST*PLKCHFIPILF Trigger: GAACAGTATTGGGATAAAGTGACACTTCAGAGGTCAAGTGGAATGGATGAAACTGGAGTTGTTGTGTGGTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS GCA 72 bp | CTATGCTCACATTACAGCCAGTTACTATTGGTGTTCTaGTACAGTTTTCGTCTGCCCAAGAAGAACAATTTG | + |
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Preference number: 6 (lower is better) Translates to: LCSHYSQLLLVF*YSFRLPKKNNL Trigger: CAAATTGTTCTTCTTGGGCAGACGAAAACTGTAGCAGAACACCAATAGTAACTGGCTGTAATGTGAGCATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS CAA 72 bp | AATACCACACAACAACTCCAGTTTCATCCATTCCACTaGACCTCTGAAGTGTCACTTTATCCCAATACTGTT | + |
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Preference number: 6 (lower is better) Translates to: NTTQQLQFHPFH*TSEVSLYPNTV Trigger: AACAGTATTGGGATAAAGTGACACTTCAGAGGTCAAGTGGAATGGATGAAACTGGAGTTGTTGTGTGGTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS CCA 72 bp | CATAGCCAACCATGGAAAGAAGATAATCTGACTTTTTaGACCAGTTACCACGTTCCTGATTTTCATCATTTT | + |
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Preference number: 6 (lower is better) Translates to: HSQPWKEDNLTF*TSYHVPDFHHF Trigger: AAAATGATGAAAATCAGGAACGTGGTAACTGGTCCAAAAAGTCAGATTATCTTCTTTCCATGGTTGGCTATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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| CDS TCA 72 bp | ACCCTCATGCGTTTCATTGCTTTGGGAAACAAATCTTaGAATGTTGTTGTAATTGTTTCAATAGAAGCAAAC | + |
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Preference number: 6 (lower is better) Translates to: TLMRFIALGNKS*NVVVIVSIEAN Trigger: GTTTGCTTCTATTGAAACAATTACAACAACATTTCAAGATTTGTTTCCCAAAGCAATGAAACGCATGAGGGT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033414.8 |
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