Pregenerated sensors for SLC6A12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030109Ensembl transcript IDs: ENSMUST00000032200.16, ENSMUST00000163771.8, ENSMUST00000165456.8, ENSMUST00000166390.2, ENSMUST00000166457.8, ENSMUST00000171008.8
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACAGAAGAGTGGCTCCCAGAAGACTGGCAGGGGTGTCCGGAGACCTaGGAGGTCACAGCAGGGTGCAGCAGAGGTTACCCCTGGGAGGAG | + |
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Preference number: 1 (lower is better) Translates to: TEEWLPEDWQGCPET*EVTAGCSRGYPWEE Trigger: CTCCTCCCAGGGGTAACCTCTGCTGCACCCTGCTGTGACCTCTCAGGTCTCCGGACACCCCTGCCAGTCTTCTGGGAGCCACTCTTCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| 3UTR TCA 90 bp | GGCGAGGTAAAGTTCTCAGAAGAGCTCACTCCTCTGGCCGATGAGTaGTTCAGAAAGTCCACGCAGTGCTCTGTGTTCCACGAGTTGGTG | + |
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Preference number: 1 (lower is better) Translates to: GEVKFSEELTPLADE*FRKSTQCSVFHELV Trigger: CACCAACTCGTGGAACACAGAGCACTGCGTGGACTTTCTGAATCACTCATCGGCCAGAGGAGTGAGCTCTTCTGAGAACTTTACCTCGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| 3UTR CCA 90 bp | GGGTCTGGTGTGATGAGTCTTCGAAGACGCTTCTTGAAGGAGCCCTaGGTCTTCAGGAAGGTGATGATGATAAAGAGTGGGACACAGGCC | + |
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Preference number: 1 (lower is better) Translates to: GSGVMSLRRRFLKEP*VFRKVMMIKSGTQA Trigger: GGCCTGTGTCCCACTCTTTATCATCATCACCTTCCTGAAGACCCAGGGCTCCTTCAAGAAGCGTCTTCGAAGACTCATCACACCAGACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| 3UTR TCA 90 bp | TGGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGACTGAGAGGTaGCAAGCTGTTCCAGCTGAACAGAAGAGTGGCTCCCAGAAGACT | + |
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Preference number: 1 (lower is better) Translates to: WQTQLPRAHLERTER*QAVPAEQKSGSQKT Trigger: AGTCTTCTGGGAGCCACTCTTCTGTTCAGCTGGAACAGCTTGTCACCTCTCAGTCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| 3UTR TCA 90 bp | GACAGGCGAGGTAAAGTTCTCAGAAGAGCTCACTCCTCTGGCCGATaGGTGATTCAGAAAGTCCACGCAGTGCTCTGTGTTCCACGAGTT | + |
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Preference number: 1 (lower is better) Translates to: DRRGKVLRRAHSSGR*VIQKVHAVLCVPRV Trigger: AACTCGTGGAACACAGAGCACTGCGTGGACTTTCTGAATCACTCATCGGCCAGAGGAGTGAGCTCTTCTGAGAACTTTACCTCGCCTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| 3UTR CCA 90 bp | CTACAAATGAGTCTCCTTCTCCCAGGCAATGAGTTCTTGTTTGGCTaGAGAGGACGAACAGTTTTGAGCAGAGGAGCCATCCTGTGGTGG | + |
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Preference number: 1 (lower is better) Translates to: LQMSLLLPGNEFLFG*RGRTVLSRGAILWW Trigger: CCACCACAGGATGGCTCCTCTGCTCAAAACTGTTCGTCCTCTCCAGCCAAACAAGAACTCATTGCCTGGGAGAAGGAGACTCATTTGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| 3UTR TCA 90 bp | CAATGGAGTATCCCCAAGAAGGATACATGTAGACATTGTTGTATTTaGGAGGTGTATACTTGCTCAAGGAGAAGAAGAAAGTGGCCAGGC | + |
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Preference number: 1 (lower is better) Translates to: QWSIPKKDTCRHCCI*EVYTCSRRRRKWPG Trigger: GCCTGGCCACTTTCTTCTTCTCCTTGAGCAAGTATACACCTCTCAAATACAACAATGTCTACATGTATCCTTCTTGGGGATACTCCATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| 3UTR-3UTR CCA 90 bp | GCAGAGGAGCCATCCTGTGGTGGGCGCCGCCCTGGCTGGGGCAGACTGGGGTCTGTGGGACACAGGCCATaGAGGAGAAAGCCAAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: AEEPSCGGRRPGWGRLGSVGHRP*RRKPRA Trigger: GGCTCTTGGCTTTCTCCTCCATGGCCTGTGTCCCAC...AGACCCCAGTCTGCCCCAGCCAGGGCGGCGCCCACCACAGGATGGCTCCTCTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| 3UTR CAA 90 bp | GTCACAGCAGGGTGCAGCAGAGGTTACCCCTGGGAGGAGCTAGCCTaGACCAGGTTCCTGGCTCTGGAGTCACCTGGCCTCTGGCACTTC | + |
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Preference number: 2 (lower is better) Translates to: VTAGCSRGYPWEELA*TRFLALESPGLWHF Trigger: GAAGTGCCAGAGGCCAGGTGACTCCAGAGCCAGGAACCTGGTCAAGGCTAGCTCCTCCCAGGGGTAACCTCTGCTGCACCCTGCTGTGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| 3UTR-3UTR CCA 90 bp | CCGCCCTGGCTGGGGCAGACTGGGGTCTGGTGTGATGAGTCTTCGAAGACGCTTGAGGGAACATATCCATaGAAGCGGTCACCAGGCACT | + |
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Preference number: 2 (lower is better) Translates to: PPWLGQTGVWCDESSKTLEGTYP*KRSPGT Trigger: AGTGCCTGGTGACCGCTTCCATGGATATGTTCCCTC...AAGCGTCTTCGAAGACTCATCACACCAGACCCCAGTCTGCCCCAGCCAGGGCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165456.8 |
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| 3UTR-3UTR TCA 90 bp | TGGGTCTTCAGGAAGGTGATGATGATAAAGAGTGGGACACAGGCCATGGAGGAGCTTTGGGGAAGGCAATaGAGGCCAGCCCAGGACCTG | + |
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Preference number: 2 (lower is better) Translates to: WVFRKVMMIKSGTQAMEELWGRQ*RPAQDL Trigger: CAGGTCCTGGGCTGGCCTTCATTGCCTTCCCCAAAG...CTCCTCCATGGCCTGTGTCCCACTCTTTATCATCATCACCTTCCTGAAGACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165456.8 |
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| 3UTR-3UTR CCA 90 bp | CAAAACACTTGGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGACTGAGAGGCCAGGTTCCTGGCTCTaGAGTCACCTGGCCTCTGGC | + |
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Preference number: 2 (lower is better) Translates to: QNTWQTQLPRAHLERTERPGSWL*SHLASG Trigger: GCCAGAGGCCAGGTGACTCCAGAGCCAGGAACCTGG...CCTCTCAGTCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCCAAGTGTTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| 3UTR-3UTR CCA 90 bp | CTCCTCTGGCCGATGAGTGATTCAGAAAGTCCACGCAGTGCTCTGTGTTCCACGGCCATGCCAATGCCTTaGAGGAGGGGACAGATCTTC | + |
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Preference number: 2 (lower is better) Translates to: LLWPMSDSESPRSALCSTAMPMP*RRGQIF Trigger: GAAGATCTGTCCCCTCCTCCAAGGCATTGGCATGGC...CGTGGAACACAGAGCACTGCGTGGACTTTCTGAATCACTCATCGGCCAGAGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| 3UTR-3UTR GCA 90 bp | CAAAACACTTGGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGACTGAGAGGGAGGTCACAGCAGGGTaGAGCAGAGGTTACCCCTGG | + |
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Preference number: 2 (lower is better) Translates to: QNTWQTQLPRAHLERTEREVTAG*SRGYPW Trigger: CCAGGGGTAACCTCTGCTGCACCCTGCTGTGACCTC...CCTCTCAGTCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCCAAGTGTTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| 3UTR-3UTR GCA 90 bp | CGTCTCTCCCAGAATTCCATGACAGGCGAGGTAAAGTTCTCAGAAGAGCTCACTCAGAGGCCATGCCAATaGCTTGGAGGAGGGGACAGA | + |
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Preference number: 2 (lower is better) Translates to: RLSQNSMTGEVKFSEELTQRPCQ*LGGGDR Trigger: TCTGTCCCCTCCTCCAAGGCATTGGCATGGCCTCTG...AGTGAGCTCTTCTGAGAACTTTACCTCGCCTGTCATGGAATTCTGGGAGAGACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| 3UTR CAA 90 bp | TGGGGCAGACTGGGGTCTGGTGTGATGAGTCTTCGAAGACGCTTCTaGAAGGAGCCCTGGGTCTTCAGGAAGGTGATGATGATAAAGAGT | + |
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Preference number: 2 (lower is better) Translates to: WGRLGSGVMSLRRRF*KEPWVFRKVMMIKS Trigger: ACTCTTTATCATCATCACCTTCCTGAAGACCCAGGGCTCCTTCAAGAAGCGTCTTCGAAGACTCATCACACCAGACCCCAGTCTGCCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| 3UTR-3UTR CCA 90 bp | AATCCAGAAAGTCAAGATGTTGAGTTCAAAACACTTGGCAGACTCAGCTTCCTAAGCAGAGGTTACCCCTaGGAGGAGCTAGCCTTGACC | + |
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Preference number: 2 (lower is better) Translates to: NPESQDVEFKTLGRLSFLSRGYP*EELALT Trigger: GGTCAAGGCTAGCTCCTCCCAGGGGTAACCTCTGCT...TAGGAAGCTGAGTCTGCCAAGTGTTTTGAACTCAACATCTTGACTTTCTGGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| 3UTR CCA 72 bp | GCAGAGGAGCCATCCTGTGGTGGGCGCCGCCCTGGCTaGGGCAGACTGGGGTCTGGTGTGATGAGTCTTCGA | + |
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Preference number: 3 (lower is better) Translates to: AEEPSCGGRRPG*GRLGSGVMSLR Trigger: TCGAAGACTCATCACACCAGACCCCAGTCTGCCCCAGCCAGGGCGGCGCCCACCACAGGATGGCTCCTCTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| 3UTR CCA 72 bp | TTGAGCAGAGGAGCCATCCTGTGGTGGGCGCCGCCCTaGCTGGGGCAGACTGGGGTCTGGTGTGATGAGTCT | + |
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Preference number: 3 (lower is better) Translates to: LSRGAILWWAPP*LGQTGVWCDES Trigger: AGACTCATCACACCAGACCCCAGTCTGCCCCAGCCAGGGCGGCGCCCACCACAGGATGGCTCCTCTGCTCAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| 3UTR CCA 72 bp | TGGTGGGCGCCGCCCTGGCTGGGGCAGACTGGGGTCTaGTGTGATGAGTCTTCGAAGACGCTTCTTGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: WWAPPWLGQTGV*CDESSKTLLEG Trigger: TCCTTCAAGAAGCGTCTTCGAAGACTCATCACACCAGACCCCAGTCTGCCCCAGCCAGGGCGGCGCCCACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| 3UTR-3UTR CAA 90 bp | GGTGATCCATGCAGGCTTGTTAGCTGCTGCAGGGGTGATGCTGGAGGCTCACACTGGGAGGAGCTAGCCTaGACCAGGTTCCTGGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: GDPCRLVSCCRGDAGGSHWEELA*TRFLAL Trigger: CAGAGCCAGGAACCTGGTCAAGGCTAGCTCCTCCCA...GTGTGAGCCTCCAGCATCACCCCTGCAGCAGCTAACAAGCCTGCATGGATCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| 3UTR GCA 72 bp | GTCACAGCAGGTGATCCATGCAGGCTTGTTAGCTGCTaGAGGGGTGATGCTGGAGGCTCACACGCCTCAGCT | + |
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Preference number: 3 (lower is better) Translates to: VTAGDPCRLVSC*RGDAGGSHASA Trigger: AGCTGAGGCGTGTGAGCCTCCAGCATCACCCCTGCAGCAGCTAACAAGCCTGCATGGATCACCTGCTGTGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| 3UTR CCA 72 bp | GGCCACTCTTTCGGAGCTGCTGAGGGAACATATCCATaGAAGCGGTCACCAGGCACTCCATACAGACGAACT | + |
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Preference number: 3 (lower is better) Translates to: GHSFGAAEGTYP*KRSPGTPYRRT Trigger: AGTTCGTCTGTATGGAGTGCCTGGTGACCGCTTCCATGGATATGTTCCCTCAGCAGCTCCGAAAGAGTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165456.8 |
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| 3UTR-3UTR CAA 90 bp | ACCCGTCTCTCCCAGAATTCCATGACAGGCGAGGTAAAGTTCTCAGAAGAGCTCGGCCATGCCAATGCCTaGGAGGAGGGGACAGATCTT | + |
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Preference number: 3 (lower is better) Translates to: TRLSQNSMTGEVKFSEELGHANA*EEGTDL Trigger: AAGATCTGTCCCCTCCTCCAAGGCATTGGCATGGCC...GAGCTCTTCTGAGAACTTTACCTCGCCTGTCATGGAATTCTGGGAGAGACGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| 3UTR GCA 72 bp | TGTCATAGAAACGGTCGGCCCCATACACCCAGCCAATaGAGATCACCTCAAACAAGGAGAGGAAGAGTAGGC | + |
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Preference number: 3 (lower is better) Translates to: CHRNGRPHTPSQ*RSPQTRRGRVG Trigger: GCCTACTCTTCCTCTCCTTGTTTGAGGTGATCTGCATTGGCTGGGTGTATGGGGCCGACCGTTTCTATGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| 3UTR-3UTR CAA 90 bp | TGTAATACCCAAAACCCGTCTCTCCCAGAATTCCATGACAGGCGAGGTAAAGTTACGAGTTGGTGCAGGTaGTCCAGGGAAGCTCCCAGG | + |
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Preference number: 3 (lower is better) Translates to: CNTQNPSLPEFHDRRGKVTSWCR*SREAPR Trigger: CCTGGGAGCTTCCCTGGACAACCTGCACCAACTCGT...AACTTTACCTCGCCTGTCATGGAATTCTGGGAGAGACGGGTTTTGGGTATTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| 3UTR TCA 72 bp | AAGTTCTCAGAAGAGCTCACTCCTCTGGCCGATGAGTaGTTCAGAAAGTCCACGCAGTGCTCTGTGTTCCAC | + |
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Preference number: 3 (lower is better) Translates to: KFSEELTPLADE*FRKSTQCSVFH Trigger: GTGGAACACAGAGCACTGCGTGGACTTTCTGAATCACTCATCGGCCAGAGGAGTGAGCTCTTCTGAGAACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| 3UTR TCA 72 bp | GGTAAAGTTCTCAGAAGAGCTCACTCCTCTGGCCGATaGGTGATTCAGAAAGTCCACGCAGTGCTCTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: GKVLRRAHSSGR*VIQKVHAVLCV Trigger: AACACAGAGCACTGCGTGGACTTTCTGAATCACTCATCGGCCAGAGGAGTGAGCTCTTCTGAGAACTTTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| 3UTR CCA 72 bp | AAAACACTTGGCAGACTCAGCTTCCTAGAGCTCACTTaGAAAGGACTGAGAGGTGACAAGCTGTTCCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: KTLGRLSFLELT*KGLRGDKLFQL Trigger: CAGCTGGAACAGCTTGTCACCTCTCAGTCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCCAAGTGTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR TCA 90 bp | GAGGAGCCATCCTGTGGTGGGCGCCGCCCTGGCTGGGGCAGACTGGGGTCTGGTAGGCTCCAGGAAGGGTaGCACCCCGGATCAGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: EEPSCGGRRPGWGRLGSGRLQEG*HPGSEE Trigger: TTCTTCTGATCCGGGGTGTCACCCTTCCTGGAGCCT...ACCAGACCCCAGTCTGCCCCAGCCAGGGCGGCGCCCACCACAGGATGGCTCCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| CDS-3UTR GCA 90 bp | GAGGAGCCATCCTGTGGTGGGCGCCGCCCTGGCTGGGGCAGACTGGGGTCTGGTTCAGGTAGAAGACGATaGCCTGGTAGGCTCCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: EEPSCGGRRPGWGRLGSGSGRRR*PGRLQE Trigger: TTCCTGGAGCCTACCAGGGCATCGTCTTCTACCTGA...ACCAGACCCCAGTCTGCCCCAGCCAGGGCGGCGCCCACCACAGGATGGCTCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| CDS-3UTR TCA 90 bp | AGAGGAGCCATCCTGTGGTGGGCGCCGCCCTGGCTGGGGCAGACTGGGGTCTGGATATACATCCCGCCCTaGCTCAGCCACTTCAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: RGAILWWAPPWLGQTGVWIYIPP*LSHFRN Trigger: ATTTCTGAAGTGGCTGAGTCAGGGCGGGATGTATAT...CCAGACCCCAGTCTGCCCCAGCCAGGGCGGCGCCCACCACAGGATGGCTCCTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163771.8 |
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| CDS-3UTR CCA 90 bp | GGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGACTGAGAGGTGACAAGCTGGGGCGCCGCCCTGGCTaGGGCAGACTGGGGTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GRLSFLELTWKGLRGDKLGRRPG*GRLGSG Trigger: ACCAGACCCCAGTCTGCCCCAGCCAGGGCGGCGCCC...CAGCTTGTCACCTCTCAGTCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CCA 90 bp | TCCGGAGACCTGAGAGGTCACAGCAGGGTGCAGCAGAGGTTACCCCTGGGAGGAGTGGGACACAGGCCATaGAGGAGAAAGCCAAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: SGDLRGHSRVQQRLPLGGVGHRP*RRKPRA Trigger: GGCTCTTGGCTTTCTCCTCCATGGCCTGTGTCCCAC...TCCTCCCAGGGGTAACCTCTGCTGCACCCTGCTGTGACCTCTCAGGTCTCCGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR TCA 90 bp | CTGAGAGGTCACAGCAGGGTGCAGCAGAGGTTACCCCTGGGAGGAGCTAGCCTTAGGCTCCAGGAAGGGTaGCACCCCGGATCAGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: LRGHSRVQQRLPLGGASLRLQEG*HPGSEE Trigger: TTCTTCTGATCCGGGGTGTCACCCTTCCTGGAGCCT...AAGGCTAGCTCCTCCCAGGGGTAACCTCTGCTGCACCCTGCTGTGACCTCTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR GCA 90 bp | CACAGCAGGGTGCAGCAGAGGTTACCCCTGGGAGGAGCTAGCCTTGACCAGGTTTCACACTCCCCTGGCTaGTATACTGGCCCAGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: HSRVQQRLPLGGASLDQVSHSPG*YTGPVP Trigger: TGGCACTGGGCCAGTATAGCAGCCAGGGGAGTGTGA...AACCTGGTCAAGGCTAGCTCCTCCCAGGGGTAACCTCTGCTGCACCCTGCTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR TCA 90 bp | TCCGGAGACCTGAGAGGTCACAGCAGGGTGCAGCAGAGGTTACCCCTGGGAGGACGTTGCCTAAGCCAATaGTCTCTCCAGCCACTGACA | + |
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Preference number: 4 (lower is better) Translates to: SGDLRGHSRVQQRLPLGGRCLSQ*SLQPLT Trigger: TGTCAGTGGCTGGAGAGATCATTGGCTTAGGCAACG...TCCTCCCAGGGGTAACCTCTGCTGCACCCTGCTGTGACCTCTCAGGTCTCCGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR GCA 90 bp | CTGAACAGAAGAGTGGCTCCCAGAAGACTGGCAGGGGTGTCCGGAGACCTGAGACAGAGGCCATGCCAATaGCTTGGAGGAGGGGACAGA | + |
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Preference number: 4 (lower is better) Translates to: LNRRVAPRRLAGVSGDLRQRPCQ*LGGGDR Trigger: TCTGTCCCCTCCTCCAAGGCATTGGCATGGCCTCTG...TCTCAGGTCTCCGGACACCCCTGCCAGTCTTCTGGGAGCCACTCTTCTGTTCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR TCA 90 bp | TGCAGGCTTGTTAGCTGCTGCAGGGGTGATGCTGGAGGCTCACACGCCTCAGCTTTCGAAGACGCTTCTTaGAGGAGCCCTGGGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: CRLVSCCRGDAGGSHASAFEDAS*RSPGSS Trigger: TGAAGACCCAGGGCTCCTTCAAGAAGCGTCTTCGAA...AGCTGAGGCGTGTGAGCCTCCAGCATCACCCCTGCAGCAGCTAACAAGCCTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR GCA 90 bp | CAGAAGACTGGCAGGGGTGTCCGGAGACCTGAGAGGTCACAGCAGGGTGCAGCACCTTCACCTGGTCCTTaGCTTTCTGGTCCATCATCT | + |
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Preference number: 4 (lower is better) Translates to: QKTGRGVRRPERSQQGAAPSPGP*LSGPSS Trigger: AGATGATGGACCAGAAAGGCAAGGACCAGGTGAAGG...TGCTGCACCCTGCTGTGACCTCTCAGGTCTCCGGACACCCCTGCCAGTCTTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CCA 90 bp | CACAGCAGGGTGCAGCAGAGGTTACCCCTGGGAGGAGCTAGCCTTGACCAGGTTGAGGGAACATATCCATaGAAGCGGTCACCAGGCACT | + |
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Preference number: 4 (lower is better) Translates to: HSRVQQRLPLGGASLDQVEGTYP*KRSPGT Trigger: AGTGCCTGGTGACCGCTTCCATGGATATGTTCCCTC...AACCTGGTCAAGGCTAGCTCCTCCCAGGGGTAACCTCTGCTGCACCCTGCTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CCA 90 bp | CGGAGACCTGAGAGGTCACAGCAGGGTGCAGCAGAGGTTACCCCTGGGAGGAGCCCAAGAGCCATCCAATaGAGTATCCCCAAGAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: RRPERSQQGAAEVTPGRSPRAIQ*SIPKKD Trigger: ATCCTTCTTGGGGATACTCCATTGGATGGCTCTTGG...GCTCCTCCCAGGGGTAACCTCTGCTGCACCCTGCTGTGACCTCTCAGGTCTCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR TCA 90 bp | GAGCTGCTGAGGGAACATATCCATGGAAGCGGTCACCAGGCACTCCATACAGACAGGCTCCAGGAAGGGTaGCACCCCGGATCAGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: ELLREHIHGSGHQALHTDRLQEG*HPGSEE Trigger: TTCTTCTGATCCGGGGTGTCACCCTTCCTGGAGCCT...GTCTGTATGGAGTGCCTGGTGACCGCTTCCATGGATATGTTCCCTCAGCAGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165456.8 |
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| CDS-3UTR TCA 90 bp | ACAGCAGGTGATCCATGCAGGCTTGTTAGCTGCTGCAGGGGTGATGCTGGAGGCGAGGACGAACAGTTTTaGGCAGAGGAGCCATCCTGT | + |
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Preference number: 4 (lower is better) Translates to: TAGDPCRLVSCCRGDAGGEDEQF*AEEPSC Trigger: ACAGGATGGCTCCTCTGCTCAAAACTGTTCGTCCTC...GCCTCCAGCATCACCCCTGCAGCAGCTAACAAGCCTGCATGGATCACCTGCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CCA 90 bp | CACAGCAGGGTGCAGCAGAGGTTACCCCTGGGAGGAGCTAGCCTTGACCAGGTTATCTTGTTGGTCCATTaGCCACGATCCTTCACCTGG | + |
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Preference number: 4 (lower is better) Translates to: HSRVQQRLPLGGASLDQVILLVH*PRSFTW Trigger: CCAGGTGAAGGATCGTGGCCAATGGACCAACAAGAT...AACCTGGTCAAGGCTAGCTCCTCCCAGGGGTAACCTCTGCTGCACCCTGCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CCA 90 bp | TGCAGGCTTGTTAGCTGCTGCAGGGGTGATGCTGGAGGCTCACACGCCTCAGCTGAGACGGAGCAAGTCTaGCTTCAGGTAGAAGACGAT | + |
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Preference number: 4 (lower is better) Translates to: CRLVSCCRGDAGGSHASAETEQV*LQVEDD Trigger: ATCGTCTTCTACCTGAAGCCAGACTTGCTCCGTCTC...AGCTGAGGCGTGTGAGCCTCCAGCATCACCCCTGCAGCAGCTAACAAGCCTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR GCA 90 bp | GGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGACTGAGAGGTGACAAGCTGGCTATACTGGCCCAGTaGCACCTCCAGGAAGAACAC | + |
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Preference number: 4 (lower is better) Translates to: GRLSFLELTWKGLRGDKLAILAQ*HLQEEH Trigger: GTGTTCTTCCTGGAGGTGGCACTGGGCCAGTATAGC...CAGCTTGTCACCTCTCAGTCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR GCA 90 bp | CAGAAGAGCTCACTCCTCTGGCCGATGAGTGATTCAGAAAGTCCACGCAGTGCTGCTATACTGGCCCAGTaGCACCTCCAGGAAGAACAC | + |
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Preference number: 4 (lower is better) Translates to: QKSSLLWPMSDSESPRSAAILAQ*HLQEEH Trigger: GTGTTCTTCCTGGAGGTGGCACTGGGCCAGTATAGC...AGCACTGCGTGGACTTTCTGAATCACTCATCGGCCAGAGGAGTGAGCTCTTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| CDS-3UTR CCA 90 bp | GGTGATCCATGCAGGCTTGTTAGCTGCTGCAGGGGTGATGCTGGAGGCTCACACGATGATGATAAAGAGTaGGACACAGGCCATGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: GDPCRLVSCCRGDAGGSHDDDKE*DTGHGG Trigger: TCCTCCATGGCCTGTGTCCCACTCTTTATCATCATC...GTGTGAGCCTCCAGCATCACCCCTGCAGCAGCTAACAAGCCTGCATGGATCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR GCA 90 bp | GTCTTCCACGTTGTCATAGAAACGGTCGGCCCCATACACCCAGCCAATGCAGATTCAGGTAGAAGACGATaGCCTGGTAGGCTCCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: VFHVVIETVGPIHPANADSGRRR*PGRLQE Trigger: TTCCTGGAGCCTACCAGGGCATCGTCTTCTACCTGA...ATCTGCATTGGCTGGGTGTATGGGGCCGACCGTTTCTATGACAACGTGGAAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163771.8 ENSMUST00000165456.8 |
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| CDS-3UTR CCA 90 bp | CTCACTTGGAAAGGACTGAGAGGTGACAAGCTGTTCCAGCTGAACAGAAGAGTGGCAGTCACACTCCCCTaGCTGCTATACTGGCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: LTWKGLRGDKLFQLNRRVAVTLP*LLYWPS Trigger: ACTGGGCCAGTATAGCAGCCAGGGGAGTGTGACTGC...CACTCTTCTGTTCAGCTGGAACAGCTTGTCACCTCTCAGTCCTTTCCAAGTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CCA 90 bp | CTCACTTGGAAAGGACTGAGAGGTGACAAGCTGTTCCAGCTGAACAGAAGAGTGCCACGATCCTTCACCTaGTCCTTGCCTTTCTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: LTWKGLRGDKLFQLNRRVPRSFT*SLPFWS Trigger: GGACCAGAAAGGCAAGGACCAGGTGAAGGATCGTGG...CACTCTTCTGTTCAGCTGGAACAGCTTGTCACCTCTCAGTCCTTTCCAAGTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CCA 90 bp | GAGTTCAAAACACTTGGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGACTGGCCATGCCAATGCCTTaGAGGAGGGGACAGATCTTC | + |
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Preference number: 4 (lower is better) Translates to: EFKTLGRLSFLELTWKGLAMPMP*RRGQIF Trigger: GAAGATCTGTCCCCTCCTCCAAGGCATTGGCATGGC...CAGTCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCCAAGTGTTTTGAACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CCA 90 bp | CAGAATTCCATGACAGGCGAGGTAAAGTTCTCAGAAGAGCTCACTCCTCTGGCCGATGAAGAAAGCTCCTaGTCCTTGCCTTTCTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: QNSMTGEVKFSEELTPLADEESS*SLPFWS Trigger: GGACCAGAAAGGCAAGGACCAGGAGCTTTCTTCATC...GGCCAGAGGAGTGAGCTCTTCTGAGAACTTTACCTCGCCTGTCATGGAATTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| CDS-3UTR TCA 90 bp | AAAACACTTGGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGACTGAGAGGTCCTTCTCCCAGGCAATaGGTTCTTGTTTGGCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: KTLGRLSFLELTWKGLRGPSPRQ*VLVWLE Trigger: CTCCAGCCAAACAAGAACTCATTGCCTGGGAGAAGG...ACCTCTCAGTCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCCAAGTGTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CCA 90 bp | CAAAACACTTGGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGACTGAGAGGCAGCCACTTCAGAAATaGGTATTCCCTGCTCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: QNTWQTQLPRAHLERTERQPLQK*VFPAPE Trigger: CTCAGGAGCAGGGAATACCCATTTCTGAAGTGGCTG...CCTCTCAGTCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCCAAGTGTTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CCA 90 bp | CAAAACACTTGGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGACTGAGAGGTTCTTGAAGGAGCCCTaGGTCTTCAGGAAGGTGATG | + |
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Preference number: 4 (lower is better) Translates to: QNTWQTQLPRAHLERTERFLKEP*VFRKVM Trigger: CATCACCTTCCTGAAGACCCAGGGCTCCTTCAAGAA...CCTCTCAGTCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCCAAGTGTTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR GCA 90 bp | GTTGAGTTCAAAACACTTGGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGATCAGGTAGAAGACGATaGCCTGGTAGGCTCCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: VEFKTLGRLSFLELTWKGSGRRR*PGRLQE Trigger: TTCCTGGAGCCTACCAGGGCATCGTCTTCTACCTGA...TCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCCAAGTGTTTTGAACTCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR TCA 90 bp | TTTAATCCAGAAAGTCAAGATGTTGAGTTCAAAACACTTGGCAGACTCAGCTTCCTTTGGGGAAGGCAATaGAGGCCAGCCCAGGACCTG | + |
|
Preference number: 4 (lower is better) Translates to: FNPESQDVEFKTLGRLSFLWGRQ*RPAQDL Trigger: CAGGTCCTGGGCTGGCCTTCATTGCCTTCCCCAAAG...GAAGCTGAGTCTGCCAAGTGTTTTGAACTCAACATCTTGACTTTCTGGATTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CCA 90 bp | CTCACTTGGAAAGGACTGAGAGGTGACAAGCTGTTCCAGCTGAACAGAAGAGTGGAGTTCTTGTTTGGCTaGAGAGGACGAACAGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: LTWKGLRGDKLFQLNRRVEFLFG*RGRTVL Trigger: CAAAACTGTTCGTCCTCTCCAGCCAAACAAGAACTC...CACTCTTCTGTTCAGCTGGAACAGCTTGTCACCTCTCAGTCCTTTCCAAGTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR GCA 90 bp | TGTAATACCCAAAACCCGTCTCTCCCAGAATTCCATGACAGGCGAGGTAAAGTTAAAGCTCCTGGTCCTTaGCTTTCTGGTCCATCATCT | + |
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Preference number: 4 (lower is better) Translates to: CNTQNPSLPEFHDRRGKVKAPGP*LSGPSS Trigger: AGATGATGGACCAGAAAGGCAAGGACCAGGAGCTTT...AACTTTACCTCGCCTGTCATGGAATTCTGGGAGAGACGGGTTTTGGGTATTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| CDS-3UTR CCA 90 bp | CAAGAGCCATCCAATGGAGTATCCCCAAGAAGGATACATGTAGACATTGTTGTACAGCCACTTCAGAAATaGGTATTCCCTGCTCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: QEPSNGVSPRRIHVDIVVQPLQK*VFPAPE Trigger: CTCAGGAGCAGGGAATACCCATTTCTGAAGTGGCTG...TACAACAATGTCTACATGTATCCTTCTTGGGGATACTCCATTGGATGGCTCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163771.8 |
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| CDS-3UTR TCA 90 bp | GAGTTCAAAACACTTGGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGACTGAGACATTGTTGTATTTaGGAGGTGTATACTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: EFKTLGRLSFLELTWKGLRHCCI*EVYTCS Trigger: TGAGCAAGTATACACCTCTCAAATACAACAATGTCT...CAGTCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCCAAGTGTTTTGAACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR GCA 90 bp | AATCCAGAAAGTCAAGATGTTGAGTTCAAAACACTTGGCAGACTCAGCTTCCTAGCCATCTTCATGGACTaGAACCTTCCTGTCCATACT | + |
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Preference number: 4 (lower is better) Translates to: NPESQDVEFKTLGRLSFLAIFMD*NLPVHT Trigger: AGTATGGACAGGAAGGTTGCAGTCCATGAAGATGGC...TAGGAAGCTGAGTCTGCCAAGTGTTTTGAACTCAACATCTTGACTTTCTGGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR TCA 90 bp | TTTAATCCAGAAAGTCAAGATGTTGAGTTCAAAACACTTGGCAGACTCAGCTTCAGGGAAAAGTGGCTGTaGAGTAAACAACCTTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: FNPESQDVEFKTLGRLSFREKWL*SKQPCL Trigger: CAGGCAAGGTTGTTTACTTCACAGCCACTTTTCCCT...GAAGCTGAGTCTGCCAAGTGTTTTGAACTCAACATCTTGACTTTCTGGATTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CAA 90 bp | CGCCGCCCTGGCTGGGGCAGACTGGGGTCTGGTGTGATGAGTCTTCGAAGACGCAGTCCCTGGGGGTCCTaGAGACGGAGCAAGTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: RRPGWGRLGSGVMSLRRRSPWGS*RRSKSG Trigger: GCCAGACTTGCTCCGTCTCAAGGACCCCCAGGGACT...GCGTCTTCGAAGACTCATCACACCAGACCCCAGTCTGCCCCAGCCAGGGCGGCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000165456.8 |
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| CDS-3UTR CAA 90 bp | CAGAAGACTGGCAGGGGTGTCCGGAGACCTGAGAGGTCACAGCAGGGTGCAGCAACGAGTTGGTGCAGGTaGTCCAGGGAAGCTCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: QKTGRGVRRPERSQQGAATSWCR*SREAPR Trigger: CCTGGGAGCTTCCCTGGACAACCTGCACCAACTCGT...TGCTGCACCCTGCTGTGACCTCTCAGGTCTCCGGACACCCCTGCCAGTCTTCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS CCA 90 bp | GCCCGCATCCATCCACACCTGGGGGTCCTTGAGACGGAGCAAGTCTaGCTTCAGGTAGAAGACGATGCCCTGGTAGGCTCCAGGAAGGGT | + |
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Preference number: 5 (lower is better) Translates to: ARIHPHLGVLETEQV*LQVEDDALVGSRKG Trigger: ACCCTTCCTGGAGCCTACCAGGGCATCGTCTTCTACCTGAAGCCAGACTTGCTCCGTCTCAAGGACCCCCAGGTGTGGATGGATGCGGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000032200.16 ENSMUST00000163771.8 ENSMUST00000166457.8 ENSMUST00000171008.8 |
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| CDS CCA 90 bp | CAGAGGGCGATGGAGTCCCTGGGGGTCCTTGAGACGGAGCAAGTCTaGCTTCAGGTAGAAGACGATGCCCTGGTAGGCTCCAGGAAGGGT | + |
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Preference number: 5 (lower is better) Translates to: QRAMESLGVLETEQV*LQVEDDALVGSRKG Trigger: ACCCTTCCTGGAGCCTACCAGGGCATCGTCTTCTACCTGAAGCCAGACTTGCTCCGTCTCAAGGACCCCCAGGGACTCCATCGCCCTCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165456.8 |
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| CDS-3UTR CAA 90 bp | CGGAGACCTGAGAGGTCACAGCAGGGTGCAGCAGAGGTTACCCCTGGGAGGAGCAGAGGACGAACAGTTTaGAGCAGAGGAGCCATCCTG | + |
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Preference number: 5 (lower is better) Translates to: RRPERSQQGAAEVTPGRSRGRTV*SRGAIL Trigger: CAGGATGGCTCCTCTGCTCAAAACTGTTCGTCCTCT...GCTCCTCCCAGGGGTAACCTCTGCTGCACCCTGCTGTGACCTCTCAGGTCTCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CAA 90 bp | ACAGCAGGTGATCCATGCAGGCTTGTTAGCTGCTGCAGGGGTGATGCTGGAGGCCATCTTGTTGGTCCATaGGCCACGATCCTTCACCTG | + |
|
Preference number: 5 (lower is better) Translates to: TAGDPCRLVSCCRGDAGGHLVGP*ATILHL Trigger: CAGGTGAAGGATCGTGGCCAATGGACCAACAAGATG...GCCTCCAGCATCACCCCTGCAGCAGCTAACAAGCCTGCATGGATCACCTGCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CAA 90 bp | GCCCGATGTAATACCCAAAACCCGTCTCTCCCAGAATTCCATGACAGGCGAGGTGAAAGCTCCTGGTCCTaGCCTTTCTGGTCCATCATC | + |
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Preference number: 5 (lower is better) Translates to: ARCNTQNPSLPEFHDRRGESSWS*PFWSII Trigger: GATGATGGACCAGAAAGGCAAGGACCAGGAGCTTTC...ACCTCGCCTGTCATGGAATTCTGGGAGAGACGGGTTTTGGGTATTACATCGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166390.2 |
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| CDS-3UTR CAA 90 bp | GTTGAGTTCAAAACACTTGGCAGACTCAGCTTCCTAGAGCTCACTTGGAAAGGATCTGTGTTCCACGAGTaGGTGCAGGTTGTCCAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: VEFKTLGRLSFLELTWKGSVFHE*VQVVQG Trigger: TCCCTGGACAACCTGCACCAACTCGTGGAACACAGA...TCCTTTCCAAGTGAGCTCTAGGAAGCTGAGTCTGCCAAGTGTTTTGAACTCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CAA 90 bp | TTTAATCCAGAAAGTCAAGATGTTGAGTTCAAAACACTTGGCAGACTCAGCTTCCACACCTGGGGGTCCTaGAGACGGAGCAAGTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: FNPESQDVEFKTLGRLSFHTWGS*RRSKSG Trigger: GCCAGACTTGCTCCGTCTCAAGGACCCCCAGGTGTG...GAAGCTGAGTCTGCCAAGTGTTTTGAACTCAACATCTTGACTTTCTGGATTAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS-3UTR CAA 90 bp | TTAATCCAGAAAGTCAAGATGTTGAGTTCAAAACACTTGGCAGACTCAGCTTCCGGCCATGCCAATGCCTaGGAGGAGGGGACAGATCTT | + |
|
Preference number: 5 (lower is better) Translates to: LIQKVKMLSSKHLADSASGHANA*EEGTDL Trigger: AAGATCTGTCCCCTCCTCCAAGGCATTGGCATGGCC...GGAAGCTGAGTCTGCCAAGTGTTTTGAACTCAACATCTTGACTTTCTGGATTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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| CDS CCA 72 bp | TGGTGGGCGCCGCCCTGGCTGGGGCAGACTGGGGTCTaGTGTGATGAGTCTTCGAAGACGCAGGCAAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: WWAPPWLGQTGV*CDESSKTQAKA Trigger: GGCCTTTGCCTGCGTCTTCGAAGACTCATCACACCAGACCCCAGTCTGCCCCAGCCAGGGCGGCGCCCACCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171008.8 |
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| CDS CCA 72 bp | CATCCACACCTGGGGGTCCTTGAGACGGAGCAAGTCTaGCTTCAGGTAGAAGACGATGCCCTGGTAGGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: HPHLGVLETEQV*LQVEDDALVGS Trigger: GGAGCCTACCAGGGCATCGTCTTCTACCTGAAGCCAGACTTGCTCCGTCTCAAGGACCCCCAGGTGTGGATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000032200.16 ENSMUST00000163771.8 ENSMUST00000166457.8 ENSMUST00000171008.8 |
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| CDS CCA 72 bp | ATGGAGTCCCTGGGGGTCCTTGAGACGGAGCAAGTCTaGCTTCAGGTAGAAGACGATGCCCTGGTAGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: MESLGVLETEQV*LQVEDDALVGS Trigger: GGAGCCTACCAGGGCATCGTCTTCTACCTGAAGCCAGACTTGCTCCGTCTCAAGGACCCCCAGGGACTCCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165456.8 |
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| CDS CCA 72 bp | AGCCATCTTCATGGACTGCAACCTTCCTGTCCATACTaGATAGGGAGGCCCTTTCTTCCCAAGCTCTTGATG | + |
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Preference number: 6 (lower is better) Translates to: SHLHGLQPSCPY*IGRPFLPKLLM Trigger: CATCAAGAGCTTGGGAAGAAAGGGCCTCCCTATCCAGTATGGACAGGAAGGTTGCAGTCCATGAAGATGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032200.16 |
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