RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC5A9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028544

Ensembl transcript IDs: ENSMUST00000102719.8, ENSMUST00000102720.8, ENSMUST00000102721.8, ENSMUST00000128340.3

Found 268 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGTGCTCTTCACTGTAATGGGATTGGCAGGCACAACGGCAACCAATaGCATGATAAGACCCTCCTCACTGGACTCATCTTACTGGGAGCT +
Preference number: 1 (lower is better)
Translates to: CALHCNGIGRHNGNQ*HDKTLLTGLILLGA
Trigger: AGCTCCCAGTAAGATGAGTCCAGTGAGGAGGGTCTTATCATGCCATTGGTTGCCGTTGTGCCTGCCAATCCCATTACAGTGAAGAGCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR TCA 90 bp CCTGGGGAGATCCTAGTGATCGCTCTAGTACTTTGTATCTCTACTTaGCAAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGC +
Preference number: 1 (lower is better)
Translates to: PGEILVIALVLCIST*QEYRTGCSSRALSR
Trigger: GCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTTGTCAAGTAGAGATACAAAGTACTAGAGCGATCACTAGGATCTCCCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR TCA 90 bp TTTTCTCGTTTCTTTAGATCTAGAGTGCTGGGAGCAGAACTCAGGTaGCCTGAGTCCCACCATGGGGCTCTTACCTTTACACTACCTTGG +
Preference number: 1 (lower is better)
Translates to: FSRFFRSRVLGAELR*PESHHGALTFTLPW
Trigger: CCAAGGTAGTGTAAAGGTAAGAGCCCCATGGTGGGACTCAGGTCACCTGAGTTCTGCTCCCAGCACTCTAGATCTAAAGAAACGAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR TCA 90 bp GGGAACATACAGAGAAACATAAAGAAGCTTGAAAGCTTCACTGCCTaGGGGAGTGCCTCAGTCTCTCAGGAAATGGAAGGTACGTTGTGT +
Preference number: 1 (lower is better)
Translates to: GNIQRNIKKLESFTA*GSASVSQEMEGTLC
Trigger: ACACAACGTACCTTCCATTTCCTGAGAGACTGAGGCACTCCCTCAGGCAGTGAAGCTTTCAAGCTTCTTTATGTTTCTCTGTATGTTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR CCA 90 bp AGAATATGGAGAGAAGCAGAATTAGAGCTATGCCAAGGAGAATCCTaGTCTTGGAGCACTTGTCTCTATACCTGTGCTCTTCACTGTAAT +
Preference number: 1 (lower is better)
Translates to: RIWREAELELCQGES*SWSTCLYTCALHCN
Trigger: ATTACAGTGAAGAGCACAGGTATAGAGACAAGTGCTCCAAGACCAGGATTCTCCTTGGCATAGCTCTAATTCTGCTTCTCTCCATATTCT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR TCA 90 bp GTCTGCAGATCAATGAAATGGAGTTTTATTTGTCTTCAGCTAGAATaGGCAATCATTGACATGGTGATCAAAAGTACATTGCAGAGGACC +
Preference number: 1 (lower is better)
Translates to: VCRSMKWSFICLQLE*AIIDMVIKSTLQRT
Trigger: GGTCCTCTGCAATGTACTTTTGATCACCATGTCAATGATTGCTCATTCTAGCTGAAGACAAATAAAACTCCATTTCATTGATCTGCAGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR-3UTR CCA 90 bp CTCGTTTCTTTAGATCTAGAGTGCTGGGAGCAGAACTCAGGTGACCTGAGTCCCGCCTGCCTCTGGTCTTaGGGACTGACCAGGGTTCAG +
Preference number: 2 (lower is better)
Translates to: LVSLDLECWEQNSGDLSPACLWS*GLTRVQ
Trigger: CTGAACCCTGGTCAGTCCCCAAGACCAGAGGCAGGC...GGGACTCAGGTCACCTGAGTTCTGCTCCCAGCACTCTAGATCTAAAGAAACGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR-3UTR CCA 90 bp CATGATAAGACCCTCCTCACTGGACTCATCTTACTGGGAGCTAAGGAGGCAAAGGCCTGCCTCTGGTCTTaGGGACTGACCAGGGTTCAG +
Preference number: 2 (lower is better)
Translates to: HDKTLLTGLILLGAKEAKACLWS*GLTRVQ
Trigger: CTGAACCCTGGTCAGTCCCCAAGACCAGAGGCAGGC...CTTTGCCTCCTTAGCTCCCAGTAAGATGAGTCCAGTGAGGAGGGTCTTATCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR TCA 90 bp AAAGCTTCACTGCCTGAGGGAGTGCCTCAGTCTCTCAGGAAATGGAAGGTACGTGTTGTGCATCTCCATTaGTCCCGGCTCCTAGGCATG +
Preference number: 2 (lower is better)
Translates to: KASLPEGVPQSLRKWKVRVVHLH*SRLLGM
Trigger: CATGCCTAGGAGCCGGGATCAATGGAGATGCACAAC...ACGTACCTTCCATTTCCTGAGAGACTGAGGCACTCCCTCAGGCAGTGAAGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR-3UTR CCA 90 bp AAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGGTTAGCCTAGCAAGTTaGAAAGAGAGCCTGCCTCTG +
Preference number: 2 (lower is better)
Translates to: KNIGLDAPHGLFHAQPLWVSLAS*KESLPL
Trigger: CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAAC...CCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR CAA 90 bp CTTGGAGCACTTGTCTCTATACCTGTGCTCTTCACTGTAATGGGATaGGCAGGCACAACGGCAACCAATGGCATGATAAGACCCTCCTCA +
Preference number: 2 (lower is better)
Translates to: LGALVSIPVLFTVMG*AGTTATNGMIRPSS
Trigger: TGAGGAGGGTCTTATCATGCCATTGGTTGCCGTTGTGCCTGCCAATCCCATTACAGTGAAGAGCACAGGTATAGAGACAAGTGCTCCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR CCA 90 bp ACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCAGAAGCCAACTCCACAACGTTAGCCTAGCAAGTTaGAAAGAGAGCCTGCCTCTG +
Preference number: 2 (lower is better)
Translates to: TQLLLIPECHLSRSQLHNVSLAS*KESLPL
Trigger: CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAAC...GTTGTGGAGTTGGCTTCTGGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR CCA 90 bp TGGTGGGGGCTGATTGGGACCTTGACACAGTGTGAGGAATTTGGAAATCTTCCTTCAAGGAAGGAGTCTTaGCAAGTAAAGGCAGAGGGA +
Preference number: 2 (lower is better)
Translates to: WWGLIGTLTQCEEFGNLPSRKES*QVKAEG
Trigger: TCCCTCTGCCTTTACTTGCCAAGACTCCTTCCTTGA...AGGAAGATTTCCAAATTCCTCACACTGTGTCAAGGTCCCAATCAGCCCCCACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR CAA 90 bp TTTGAGGTAGGATTACAGGGCAGTATAGTAGAAAGAGAGTTGGAATaGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGAGATCCT +
Preference number: 2 (lower is better)
Translates to: FEVGLQGSIVERELE*ETQCESYCVTWGDP
Trigger: AGGATCTCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTGTAATCCTACCTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR GCA 90 bp CCAGAGCACAAAAGGCACAGGGCCTGTAAGAGTGTTATAATCCAACAAGCATCTCCAGGCTGTCTGCTCTaGTCCATAAGGCTCTTTGAT +
Preference number: 2 (lower is better)
Translates to: PEHKRHRACKSVIIQQASPGCLL*SIRLFD
Trigger: ATCAAAGAGCCTTATGGAGCAGAGCAGACAGCCTGG...AGATGCTTGTTGGATTATAACACTCTTACAGGCCCTGTGCCTTTTGTGCTCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR CCA 90 bp GGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTTAGCCTAGCAAGTTaGAAAGAGAGCCTGCCTCTG +
Preference number: 2 (lower is better)
Translates to: GSIVERELELETQCESYCVSLAS*KESLPL
Trigger: CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAAC...ACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR CCA 90 bp TGGTGGGGGCTGATTGGGACCTTGACACAGTGTGAGGAATTTGGAAATCTTCCTAAAGAGAGTTGGAATTaGAGACCCAGTGTGAGTCCT +
Preference number: 2 (lower is better)
Translates to: WWGLIGTLTQCEEFGNLPKESWN*RPSVSP
Trigger: AGGACTCACACTGGGTCTCCAATTCCAACTCTCTTT...AGGAAGATTTCCAAATTCCTCACACTGTGTCAAGGTCCCAATCAGCCCCCACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR CCA 90 bp GCAACCAATGGCATGATAAGACCCTCCTCACTGGACTCATCTTACTGGGAGCTAAAAGAGAGTTGGAATTaGAGACCCAGTGTGAGTCCT +
Preference number: 2 (lower is better)
Translates to: ATNGMIRPSSLDSSYWELKESWN*RPSVSP
Trigger: AGGACTCACACTGGGTCTCCAATTCCAACTCTCTTT...TAGCTCCCAGTAAGATGAGTCCAGTGAGGAGGGTCTTATCATGCCATTGGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR TCA 90 bp ACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCAGAAGCCAACTCCACAACGACCTTGACACAGTGTaGGGAATTTGGAAATCTTCC +
Preference number: 2 (lower is better)
Translates to: TQLLLIPECHLSRSQLHNDLDTV*GIWKSS
Trigger: GGAAGATTTCCAAATTCCTCACACTGTGTCAAGGTC...GTTGTGGAGTTGGCTTCTGGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR GCA 90 bp CTCGTTTCTTTAGATCTAGAGTGCTGGGAGCAGAACTCAGGTGACCTGAGTCCCCCAACAAGCATCTATTaGCTTCTTTTGTTGATAGGT +
Preference number: 2 (lower is better)
Translates to: LVSLDLECWEQNSGDLSPPTSIY*LLLLIG
Trigger: ACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGG...GGGACTCAGGTCACCTGAGTTCTGCTCCCAGCACTCTAGATCTAAAGAAACGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR-3UTR CCA 90 bp TCCATGATTCTGTACACCTACCTATGTCAAAGCCAACTTGCTCATCACCTGTGTCTGGACTCATCTTACTaGGAGCTAAGGAGGCAAAGA +
Preference number: 2 (lower is better)
Translates to: SMILYTYLCQSQLAHHLCLDSSY*ELRRQR
Trigger: TCTTTGCCTCCTTAGCTCCCAGTAAGATGAGTCCAG...ACACAGGTGATGAGCAAGTTGGCTTTGACATAGGTAGGTGTACAGAATCATGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR-3UTR CCA 90 bp TCCAACAAGCATCTATTGCCTTCTTTTGTTGATAGGTACAAAGTCAGGTTGTGCTGCCAAGGAGAATCCTaGTCTTGGAGCACTTGTCTC +
Preference number: 2 (lower is better)
Translates to: SNKHLLPSFVDRYKVRLCCQGES*SWSTCL
Trigger: GAGACAAGTGCTCCAAGACCAGGATTCTCCTTGGCA...GCACAACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR TCA 90 bp TATAATCCAACAAGCATCTATTGCCTTCTTTTGTTGATAGGTACAAAGTCAGGTGTGAGTCCTACTGTGTaGCCTGGGGAGATCCTAGTG +
Preference number: 2 (lower is better)
Translates to: YNPTSIYCLLLLIGTKSGVSPTV*PGEILV
Trigger: CACTAGGATCTCCCCAGGTCACACAGTAGGACTCAC...ACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGATTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR TCA 90 bp AGCCAATTGTCCTATCAGAATTCCATGCTTCCTCAACTTCCAAGGGAACATACAAAACATAAAGAAGCTTaGAAGCTTCACTGCCTGAGG +
Preference number: 2 (lower is better)
Translates to: SQLSYQNSMLPQLPREHTKHKEA*KLHCLR
Trigger: CCTCAGGCAGTGAAGCTTTCAAGCTTCTTTATGTTT...TGTATGTTCCCTTGGAAGTTGAGGAAGCATGGAATTCTGATAGGACAATTGGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR GCA 72 bp TTGGCAAGTAAAGGCAGAGGGATAAGGGCCATGGTGTaGCCACCCCCAGGCTGTCTGCTCTGCTCCATAAGG +
Preference number: 3 (lower is better)
Translates to: LASKGRGIRAMV*PPPGCLLCSIR
Trigger: CCTTATGGAGCAGAGCAGACAGCCTGGGGGTGGGCACACCATGGCCCTTATCCCTCTGCCTTTACTTGCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR CCA 72 bp GATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTaGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGC +
Preference number: 3 (lower is better)
Translates to: DAPHGLFHAQPL*SAVSLASWKES
Trigger: GCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR CCA 72 bp TGTGGTAAGGGCCACAAGGAGATAGCAAATGCATGGTaGGGGCTGATTGGGACCTTGACACAGTGTGAGGAA +
Preference number: 3 (lower is better)
Translates to: CGKGHKEIANAW*GLIGTLTQCEE
Trigger: TTCCTCACACTGTGTCAAGGTCCCAATCAGCCCCCACCATGCATTTGCTATCTCCTTGTGGCCCTTACCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR TCA 72 bp TGCATGGTGGGGGCTGATTGGGACCTTGACACAGTGTaGGGAATTTGGAAATCTTCCTGGGAAGTTAAGGAC +
Preference number: 3 (lower is better)
Translates to: CMVGADWDLDTV*GIWKSSWEVKD
Trigger: GTCCTTAACTTCCCAGGAAGATTTCCAAATTCCTCACACTGTGTCAAGGTCCCAATCAGCCCCCACCATGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR TCA 72 bp TTCTTTAGATCTAGAGTGCTGGGAGCAGAACTCAGGTaGCCTGAGTCCCACCATGGGGCTCTTACCTTTACA +
Preference number: 3 (lower is better)
Translates to: FFRSRVLGAELR*PESHHGALTFT
Trigger: TGTAAAGGTAAGAGCCCCATGGTGGGACTCAGGTCACCTGAGTTCTGCTCCCAGCACTCTAGATCTAAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR CCA 72 bp CACTGTAATGGGATTGGCAGGCACAACGGCAACCAATaGCATGATAAGACCCTCCTCACTGGACTCATCTTA +
Preference number: 3 (lower is better)
Translates to: HCNGIGRHNGNQ*HDKTLLTGLIL
Trigger: TAAGATGAGTCCAGTGAGGAGGGTCTTATCATGCCATTGGTTGCCGTTGTGCCTGCCAATCCCATTACAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR CAA 90 bp GGAGTGCCTCAGTCTCTCAGGAAATGGAAGGTACGTTGTGTACCAGGAACCATGCACAGTGTGAGGAATTaGGAAATCTTCCTGGGAAGT +
Preference number: 3 (lower is better)
Translates to: GVPQSLRKWKVRCVPGTMHSVRN*EIFLGS
Trigger: ACTTCCCAGGAAGATTTCCAAATTCCTCACACTGTG...CATGGTTCCTGGTACACAACGTACCTTCCATTTCCTGAGAGACTGAGGCACTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR TCA 72 bp ATAAGCTTCTTGCCACACCATTTTACTGTTTGCCTCTaGCTCCGACTCCACTCACAACCTCACCATCCCATG +
Preference number: 3 (lower is better)
Translates to: ISFLPHHFTVCL*LRLHSQPHHPM
Trigger: CATGGGATGGTGAGGTTGTGAGTGGAGTCGGAGTCAGAGGCAAACAGTAAAATGGTGTGGCAAGAAGCTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR CCA 72 bp GAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTaGGGAGATCCTAGTGATCGCTCTAGTACTTTGTAT +
Preference number: 3 (lower is better)
Translates to: ELETQCESYCVT*GDPSDRSSTLY
Trigger: ATACAAAGTACTAGAGCGATCACTAGGATCTCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR TCA 72 bp CAGAGAAACATAAAGAAGCTTGAAAGCTTCACTGCCTaGGGGAGTGCCTCAGTCTCTCAGGAAATGGAAGGT +
Preference number: 3 (lower is better)
Translates to: QRNIKKLESFTA*GSASVSQEMEG
Trigger: ACCTTCCATTTCCTGAGAGACTGAGGCACTCCCTCAGGCAGTGAAGCTTTCAAGCTTCTTTATGTTTCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR GCA 72 bp GCTCCTAGAATATGGAGAGAAGCAGAATTAGAGCTATaGCAAGGAGAATCCTGGTCTTGGAGCACTTGTCTC +
Preference number: 3 (lower is better)
Translates to: APRIWREAELEL*QGESWSWSTCL
Trigger: GAGACAAGTGCTCCAAGACCAGGATTCTCCTTGGCATAGCTCTAATTCTGCTTCTCTCCATATTCTAGGAGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR CAA 90 bp AGCCAATTGTCCTATCAGAATTCCATGCTTCCTCAACTTCCAAGGGAACATACAGAAAGAGAGTTGGAATaGGAGACCCAGTGTGAGTCC +
Preference number: 3 (lower is better)
Translates to: SQLSYQNSMLPQLPREHTERELE*ETQCES
Trigger: GGACTCACACTGGGTCTCCAATTCCAACTCTCTTTC...TGTATGTTCCCTTGGAAGTTGAGGAAGCATGGAATTCTGATAGGACAATTGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR-3UTR CAA 90 bp TACACACATGAGACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCAGAAGCCACAGTGTGAGGAATTaGGAAATCTTCCTGGGAAGT +
Preference number: 3 (lower is better)
Translates to: YTHETQLLLIPECHLSRSHSVRN*EIFLGS
Trigger: ACTTCCCAGGAAGATTTCCAAATTCCTCACACTGTG...GCTTCTGGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGTCTCATGTGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR TCA 72 bp ATCCTAGTGATCGCTCTAGTACTTTGTATCTCTACTTaGCAAGAATATAGGACTGGATGCTCCTCACGGGCT +
Preference number: 3 (lower is better)
Translates to: ILVIALVLCIST*QEYRTGCSSRA
Trigger: AGCCCGTGAGGAGCATCCAGTCCTATATTCTTGTCAAGTAGAGATACAAAGTACTAGAGCGATCACTAGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR-3UTR CAA 90 bp TCCATGATTCTGTACACCTACCTATGTCAAAGCCAACTTGCTCATCACCTGTGTATAGTAGAAAGAGAGTaGGAATTGGAGACCCAGTGT +
Preference number: 3 (lower is better)
Translates to: SMILYTYLCQSQLAHHLCIVERE*ELETQC
Trigger: ACACTGGGTCTCCAATTCCAACTCTCTTTCTACTAT...ACACAGGTGATGAGCAAGTTGGCTTTGACATAGGTAGGTGTACAGAATCATGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
3UTR-3UTR CAA 90 bp TATAATCCAACAAGCATCTATTGCCTTCTTTTGTTGATAGGTACAAAGTCAGGTTTCAAGGAAGGAGTCTaGGCAAGTAAAGGCAGAGGG +
Preference number: 3 (lower is better)
Translates to: YNPTSIYCLLLLIGTKSGFKEGV*ASKGRG
Trigger: CCCTCTGCCTTTACTTGCCAAGACTCCTTCCTTGAA...ACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGATTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR GCA 72 bp TTAATGTCTAAAGCCAATTGTCCTATCAGAATTCCATaGTTCCTCAACTTCCAAGGGAACATACAGAGAAAC +
Preference number: 3 (lower is better)
Translates to: LMSKANCPIRIP*FLNFQGNIQRN
Trigger: GTTTCTCTGTATGTTCCCTTGGAAGTTGAGGAAGCATGGAATTCTGATAGGACAATTGGCTTTAGACATTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GATAAGGGCCATGGTGTGCCCACCCCCAGGCTGTCTGCTCTGCTCCATAAGGCTGCTGGGCTCAGGGCTTaGTGTGGGGCTCCTGAGAGT +
Preference number: 4 (lower is better)
Translates to: DKGHGVPTPRLSALLHKAAGLRA*CGAPES
Trigger: ACTCTCAGGAGCCCCACAGCAAGCCCTGAGCCCAGC...AGCCTTATGGAGCAGAGCAGACAGCCTGGGGGTGGGCACACCATGGCCCTTATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp CAGCCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGAGGGCCCTCTACCACTaGCCTCCCTGCCAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: QPLWSAVSLASWKESLPLRALYH*PPCQSW
Trigger: CCAGGACTGGCAGGGAGGCCAGTGGTAGAGGGCCCT...CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp AGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTGCCTCCCTTGGCATGTaGAAGATTCTTGGCCGCGAG +
Preference number: 4 (lower is better)
Translates to: RTGCSSRALSRSASVVCSASLGM*KILGRE
Trigger: CTCGCGGCCAAGAATCTTTCACATGCCAAGGGAGGC...ACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp AGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTGCCGCGAGAGACCTCTaGACAATCACCTGGTCTGTG +
Preference number: 4 (lower is better)
Translates to: RTGCSSRALSRSASVVCSAARDL*TITWSV
Trigger: CACAGACCAGGTGATTGTGCAGAGGTCTCTCGCGGC...ACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp CCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCTCTTGCTCCGATGCCTaGCTGCGGAAGCGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: PLWSAVSLASWKESLPLVSCSDA*LRKRCH
Trigger: GTGGCAGCGCTTCCGCAGGCAGGCATCGGAGCAAGA...GACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp AACTCCACAACTCTCTTCCCCACCATCCAGAGCACAAAAGGCACAGGGCCTGTAAGGGCCCTCTACCACTaGCCTCCCTGCCAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: NSTTLFPTIQSTKGTGPVRALYH*PPCQSW
Trigger: CCAGGACTGGCAGGGAGGCCAGTGGTAGAGGGCCCT...TACAGGCCCTGTGCCTTTTGTGCTCTGGATGGTGGGGAAGAGAGTTGTGGAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp ATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCACACAGCCTTCTCAGCTaGGCTCAGGGCTTGCTGTGG +
Preference number: 4 (lower is better)
Translates to: IGLDAPHGLFHAQPLWSAHSLLS*AQGLLW
Trigger: CCACAGCAAGCCCTGAGCCCAGCTGAGAAGGCTGTG...TGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CAGCCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGCAGGAAGAGGGCTGTaGTGGGTGGGGCTAAGTAGC +
Preference number: 4 (lower is better)
Translates to: QPLWSAVSLASWKESLPLAGRGL*WVGLSS
Trigger: GCTACTTAGCCCCACCCATCACAGCCCTCTTCCTGC...CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp AGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTAGCTGTGAGGCCCCCTaGAATGGTGTAGACAGCTGT +
Preference number: 4 (lower is better)
Translates to: RTGCSSRALSRSASVVCSSCEAP*NGVDSC
Trigger: ACAGCTGTCTACACCATTGCAGGGGGCCTCACAGCT...ACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp AGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTTGCCTGCGGAAGCGCTaGCACACATCTATGGCAAAC +
Preference number: 4 (lower is better)
Translates to: RTGCSSRALSRSASVVCSCLRKR*HTSMAN
Trigger: GTTTGCCATAGATGTGTGGCAGCGCTTCCGCAGGCA...ACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp CTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCTTGGCTGGGCTCAGGGCTTaGTGTGGGGCTCCTGAGAGT +
Preference number: 4 (lower is better)
Translates to: LWSAVSLASWKESLPLVLAGLRA*CGAPES
Trigger: ACTCTCAGGAGCCCCACAGCAAGCCCTGAGCCCAGC...CAAGACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp CAGCCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGCGGCTCCTCCTCGATaGTGGTCAGCTTCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: QPLWSAVSLASWKESLPLAAPPR*WSASAP
Trigger: TGGAGCAGAAGCTGACCAGCATCGAGGAGGAGCCGC...CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GATAAGGGCCATGGTGTGCCCACCCCCAGGCTGTCTGCTCTGCTCCATAAGGCTGCTGCCACACATCTATaGCAAACAGGGTGCTACTGC +
Preference number: 4 (lower is better)
Translates to: DKGHGVPTPRLSALLHKAAATHL*QTGCYC
Trigger: GCAGTAGCACCCTGTTTGCCATAGATGTGTGGCAGC...AGCCTTATGGAGCAGAGCAGACAGCCTGGGGGTGGGCACACCATGGCCCTTATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GCCTGCCTCTGGTCTTGGGGACTGACCAGGGTTCAGGGGTTCTTACTCATTTCACACAGCCTTCTCAGCTaGGCTCAGGGCTTGCTGTGG +
Preference number: 4 (lower is better)
Translates to: ACLWSWGLTRVQGFLLISHSLLS*AQGLLW
Trigger: CCACAGCAAGCCCTGAGCCCAGCTGAGAAGGCTGTG...TGAAATGAGTAAGAACCCCTGAACCCTGGTCAGTCCCCAAGACCAGAGGCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTTAGCCTACCAAGGCCATCTGGATaGAGAGGGCTCCAGAGAAGA +
Preference number: 4 (lower is better)
Translates to: DAPHGLFHAQPLWSAVSLPRPSG*RGLQRR
Trigger: TCTTCTCTGGAGCCCTCTTCATCCAGATGGCCTTGG...TAGGCTAACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp ATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGAAAGCCCAGAAACATaGGGACCAGAGCTCCCCCAA +
Preference number: 4 (lower is better)
Translates to: IGLDAPHGLFHAQPLWSAESPET*GPELPQ
Trigger: TTGGGGGAGCTCTGGTCCTCATGTTTCTGGGCTTTC...TGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp AGCCAACTCCACAACTCTCTTCCCCACCATCCAGAGCACAAAAGGCACAGGGCCGAAAGCCCAGAAACATaGGGACCAGAGCTCCCCCAA +
Preference number: 4 (lower is better)
Translates to: SQLHNSLPHHPEHKRHRAESPET*GPELPQ
Trigger: TTGGGGGAGCTCTGGTCCTCATGTTTCTGGGCTTTC...GGCCCTGTGCCTTTTGTGCTCTGGATGGTGGGGAAGAGAGTTGTGGAGTTGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp ATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGCCCCACACACTCTTTaGCAGATGTCAGGGTCCACA +
Preference number: 4 (lower is better)
Translates to: IGLDAPHGLFHAQPLWSAAPHTL*QMSGST
Trigger: TGTGGACCCTGACATCTGTCAAAGAGTGTGTGGGGC...TGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp AGCCAACTCCACAACTCTCTTCCCCACCATCCAGAGCACAAAAGGCACAGGGCCAGCTGTGAGGCCCCCTaGAATGGTGTAGACAGCTGT +
Preference number: 4 (lower is better)
Translates to: SQLHNSLPHHPEHKRHRASCEAP*NGVDSC
Trigger: ACAGCTGTCTACACCATTGCAGGGGGCCTCACAGCT...GGCCCTGTGCCTTTTGTGCTCTGGATGGTGGGGAAGAGAGTTGTGGAGTTGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp ATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCATGCCTGCGGAAGCGCTaGCACACATCTATGGCAAAC +
Preference number: 4 (lower is better)
Translates to: IGLDAPHGLFHAQPLWSACLRKR*HTSMAN
Trigger: GTTTGCCATAGATGTGTGGCAGCGCTTCCGCAGGCA...TGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGATCTTGCTCCGATGCCTaGCTGCGGAAGCGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: ERELELETQCESYCVTWGSCSDA*LRKRCH
Trigger: GTGGCAGCGCTTCCGCAGGCAGGCATCGGAGCAAGA...TCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp CTCGTTTCTTTAGATCTAGAGTGCTGGGAGCAGAACTCAGGTGACCTGAGTCCCCAGCTCTTGCTCCGATaGCTGCCTGCGGAAGCGCTG +
Preference number: 4 (lower is better)
Translates to: LVSLDLECWEQNSGDLSPQLLLR*LPAEAL
Trigger: CAGCGCTTCCGCAGGCAGGCATCGGAGCAAGAGCTG...GGGACTCAGGTCACCTGAGTTCTGCTCCCAGCACTCTAGATCTAAAGAAACGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp AAGAGAGCCTGCCTCTGGTCTTGGGGACTGACCAGGGTTCAGGGGTTCTTACTCTTCTTCCTCATCTCCTaGAGGGCCCTCTACCACTGG +
Preference number: 4 (lower is better)
Translates to: KRACLWSWGLTRVQGFLLFFLIS*RALYHW
Trigger: CCAGTGGTAGAGGGCCCTGCAGGAGATGAGGAAGAA...GAGTAAGAACCCCTGAACCCTGGTCAGTCCCCAAGACCAGAGGCAGGCTCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp ATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCATTCTTCCTCATCTCCTaGAGGGCCCTCTACCACTGG +
Preference number: 4 (lower is better)
Translates to: IGLDAPHGLFHAQPLWSAFFLIS*RALYHW
Trigger: CCAGTGGTAGAGGGCCCTGCAGGAGATGAGGAAGAA...TGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp AAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGGCGGCTCCTCCTCGATaGTGGTCAGCTTCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: KNIGLDAPHGLFHAQPLWAAPPR*WSASAP
Trigger: TGGAGCAGAAGCTGACCAGCATCGAGGAGGAGCCGC...CCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTTAGCCTAGAAGGCATCAGGCCGTaGGAGGTGACAGGTGGTATT +
Preference number: 4 (lower is better)
Translates to: DAPHGLFHAQPLWSAVSLEGIRP*EVTGGI
Trigger: AATACCACCTGTCACCTCCCACGGCCTGATGCCTTC...TAGGCTAACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GCCTGCCTCTGGTCTTGGGGACTGACCAGGGTTCAGGGGTTCTTACTCATTTCACCAAGGCCATCTGGATaGAGAGGGCTCCAGAGAAGA +
Preference number: 4 (lower is better)
Translates to: ACLWSWGLTRVQGFLLISPRPSG*RGLQRR
Trigger: TCTTCTCTGGAGCCCTCTTCATCCAGATGGCCTTGG...TGAAATGAGTAAGAACCCCTGAACCCTGGTCAGTCCCCAAGACCAGAGGCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTTAGCCTATACCAGCCAACCTCCTaGAAGCCCAGAAACATGAGG +
Preference number: 4 (lower is better)
Translates to: DAPHGLFHAQPLWSAVSLYQPTS*KPRNMR
Trigger: CCTCATGTTTCTGGGCTTTCAGGAGGTTGGCTGGTA...TAGGCTAACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp AAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCAGGCCGTGGGAGGTaGCAGGTGGTATTGGGAACT +
Preference number: 4 (lower is better)
Translates to: KNIGLDAPHGLFHAQPLWSGRGR*QVVLGT
Trigger: AGTTCCCAATACCACCTGTCACCTCCCACGGCCTGA...CCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCTTGTCAGGCCGTGGGAGGTaGCAGGTGGTATTGGGAACT +
Preference number: 4 (lower is better)
Translates to: LWSAVSLASWKESLPLVLSGRGR*QVVLGT
Trigger: AGTTCCCAATACCACCTGTCACCTCCCACGGCCTGA...CAAGACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CAGCCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGCCCCACACACTCTTTaGCAGATGTCAGGGTCCACA +
Preference number: 4 (lower is better)
Translates to: QPLWSAVSLASWKESLPLAPHTL*QMSGST
Trigger: TGTGGACCCTGACATCTGTCAAAGAGTGTGTGGGGC...CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp CATGATAAGACCCTCCTCACTGGACTCATCTTACTGGGAGCTAAGGAGGCAAAGTCTTGCTCCGATGCCTaGCTGCGGAAGCGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: HDKTLLTGLILLGAKEAKSCSDA*LRKRCH
Trigger: GTGGCAGCGCTTCCGCAGGCAGGCATCGGAGCAAGA...CTTTGCCTCCTTAGCTCCCAGTAAGATGAGTCCAGTGAGGAGGGTCTTATCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GCAACCAATGGCATGATAAGACCCTCCTCACTGGACTCATCTTACTGGGAGCTAGCTGGGCTCAGGGCTTaGTGTGGGGCTCCTGAGAGT +
Preference number: 4 (lower is better)
Translates to: ATNGMIRPSSLDSSYWELAGLRA*CGAPES
Trigger: ACTCTCAGGAGCCCCACAGCAAGCCCTGAGCCCAGC...TAGCTCCCAGTAAGATGAGTCCAGTGAGGAGGGTCTTATCATGCCATTGGTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp CTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCTTGCAGCCCAAGGCCATCTaGATGAAGAGGGCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: LWSAVSLASWKESLPLVLQPKAI*MKRAPE
Trigger: CTCTGGAGCCCTCTTCATCCAGATGGCCTTGGGCTG...CAAGACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTTAGCCTAACAGGCAACTTCATCTaGGTACAGGGCCCTGCTGAT +
Preference number: 4 (lower is better)
Translates to: DAPHGLFHAQPLWSAVSLTGNFI*VQGPAD
Trigger: ATCAGCAGGGCCCTGTACCCAGATGAAGTTGCCTGT...TAGGCTAACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTTAGCCTATGGAGCATCCAACTCTaGCCCCACACACTCTTTGAC +
Preference number: 4 (lower is better)
Translates to: DAPHGLFHAQPLWSAVSLWSIQL*PHTLFD
Trigger: GTCAAAGAGTGTGTGGGGCCAGAGTTGGATGCTCCA...TAGGCTAACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp CAGGGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACAGGGCCCTCTACCACTaGCCTCCCTGCCAGTCCTGG +
Preference number: 4 (lower is better)
Translates to: QGSIVERELELETQCESYRALYH*PPCQSW
Trigger: CCAGGACTGGCAGGGAGGCCAGTGGTAGAGGGCCCT...GTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp AGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTGTTCAGGCCCCTGAGTaGTGTTTGCTTCTTCCTCAT +
Preference number: 4 (lower is better)
Translates to: RTGCSSRALSRSASVVCSVQAPE*CLLLPH
Trigger: ATGAGGAAGAAGCAAACACCACTCAGGGGCCTGAAC...ACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCGAGCTCCCCCAACCATaGTCACAGTCTGTAGAGCAT +
Preference number: 4 (lower is better)
Translates to: PLWSAVSLASWKESLPLVELPQP*SQSVEH
Trigger: ATGCTCTACAGACTGTGATCATGGTTGGGGGAGCTC...GACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CAGCCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGAAGATAGAGGTGAGTaGGCTCATGAGGGCAGCCAT +
Preference number: 4 (lower is better)
Translates to: QPLWSAVSLASWKESLPLEDRGE*AHEGSH
Trigger: ATGGCTGCCCTCATGAGCTCACTCACCTCTATCTTC...CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTTAGCCTACACTCCTGGTTCCATTaGCACAAGCTCCGTGTTCAT +
Preference number: 4 (lower is better)
Translates to: DAPHGLFHAQPLWSAVSLHSWFH*HKLRVH
Trigger: ATGAACACGGAGCTTGTGGCAATGGAACCAGGAGTG...TAGGCTAACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGAGATCCTAGTGATGCCGCGAGAGACCTCTaGACAATCACCTGGTCTGTG +
Preference number: 4 (lower is better)
Translates to: ELETQCESYCVTWGDPSDAARDL*TITWSV
Trigger: CACAGACCAGGTGATTGTGCAGAGGTCTCTCGCGGC...ATCACTAGGATCTCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp CAGGGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACCAGCTCTTGCTCCGATaGCTGCCTGCGGAAGCGCTG +
Preference number: 4 (lower is better)
Translates to: QGSIVERELELETQCESYQLLLR*LPAEAL
Trigger: CAGCGCTTCCGCAGGCAGGCATCGGAGCAAGAGCTG...GTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGAGATCCTAGTGATTACCACTGGCCTCCCTaGCAGTCCTGGAGAGTTGTC +
Preference number: 4 (lower is better)
Translates to: ELETQCESYCVTWGDPSDYHWPP*QSWRVV
Trigger: GACAACTCTCCAGGACTGGCAGGGAGGCCAGTGGTA...ATCACTAGGATCTCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp ATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAATGCTGGTCAGCTTCTaGTCCAACACAGCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: IGLDAPHGLFHAQPLWSAMLVSF*SNTAFS
Trigger: TGAGAAGGCTGTGTTGGAGCAGAAGCTGACCAGCAT...TGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp AGCCAACTCCACAACTCTCTTCCCCACCATCCAGAGCACAAAAGGCACAGGGCCATGCTGGTCAGCTTCTaGTCCAACACAGCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: SQLHNSLPHHPEHKRHRAMLVSF*SNTAFS
Trigger: TGAGAAGGCTGTGTTGGAGCAGAAGCTGACCAGCAT...GGCCCTGTGCCTTTTGTGCTCTGGATGGTGGGGAAGAGAGTTGTGGAGTTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GCACTTGTCTCTATACCTGTGCTCTTCACTGTAATGGGATTGGCAGGCACAACGGCGGCTCCTCCTCGATaGTGGTCAGCTTCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: ALVSIPVLFTVMGLAGTTAAPPR*WSASAP
Trigger: TGGAGCAGAAGCTGACCAGCATCGAGGAGGAGCCGC...CGTTGTGCCTGCCAATCCCATTACAGTGAAGAGCACAGGTATAGAGACAAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTTAGCCTAGGTGACAGGTGGTATTaGGAACTGTGGTATTGGGGA +
Preference number: 4 (lower is better)
Translates to: DAPHGLFHAQPLWSAVSLGDRWY*ELWYWG
Trigger: TCCCCAATACCACAGTTCCCAATACCACCTGTCACC...TAGGCTAACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTTAGCCTAGTGGGAGGTGACAGGTaGTATTGGGAACTGTGGTAT +
Preference number: 4 (lower is better)
Translates to: DAPHGLFHAQPLWSAVSLVGGDR*YWELWY
Trigger: ATACCACAGTTCCCAATACCACCTGTCACCTCCCAC...TAGGCTAACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp ATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGCCAAAAATGAGACCTaGCCAGGGGATGTCTCCATT +
Preference number: 4 (lower is better)
Translates to: IGLDAPHGLFHAQPLWSAAKNET*PGDVSI
Trigger: AATGGAGACATCCCCTGGCCAGGTCTCATTTTTGGC...TGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp CAGCCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGCTCTGCACAATCACCTaGTCTGTGCACCAACACCAG +
Preference number: 4 (lower is better)
Translates to: QPLWSAVSLASWKESLPLLCTIT*SVHQHQ
Trigger: CTGGTGTTGGTGCACAGACCAGGTGATTGTGCAGAG...CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp AAGAGAGCCTGCCTCTGGTCTTGGGGACTGACCAGGGTTCAGGGGTTCTTACTCGTTCAGGCCCCTGAGTaGTGTTTGCTTCTTCCTCAT +
Preference number: 4 (lower is better)
Translates to: KRACLWSWGLTRVQGFLLVQAPE*CLLLPH
Trigger: ATGAGGAAGAAGCAAACACCACTCAGGGGCCTGAAC...GAGTAAGAACCCCTGAACCCTGGTCAGTCCCCAAGACCAGAGGCAGGCTCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR CAA 72 bp AGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCTaGGGGACTGACCAGGGTTCAGGGGTTCTTACTCAT +
Preference number: 4 (lower is better)
Translates to: SLASWKESLPLV*GTDQGSGVLTH
Trigger: ATGAGTAAGAACCCCTGAACCCTGGTCAGTCCCCAAGACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CAGCCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGTCTGACTCCATTCCTTaGCACTCCTGGTTCCATTGC +
Preference number: 4 (lower is better)
Translates to: QPLWSAVSLASWKESLPLSDSIP*HSWFHC
Trigger: GCAATGGAACCAGGAGTGTCAAGGAATGGAGTCAGA...CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGTTAGCCTATCACCACCAGCAAGATaGCTGTGGAGAGATAGAGAT +
Preference number: 4 (lower is better)
Translates to: DAPHGLFHAQPLWSAVSLSPPAR*LWRDRD
Trigger: ATCTCTATCTCTCCACAGTCATCTTGCTGGTGGTGA...TAGGCTAACTGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp AAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTACCAGCCAACCTCCTaGAAGCCCAGAAACATGAGG +
Preference number: 4 (lower is better)
Translates to: KNIGLDAPHGLFHAQPLWYQPTS*KPRNMR
Trigger: CCTCATGTTTCTGGGCTTTCAGGAGGTTGGCTGGTA...CCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp TGGTGGGGGCTGATTGGGACCTTGACACAGTGTGAGGAATTTGGAAATCTTCCTTCAGGCCGTGGGAGGTaGCAGGTGGTATTGGGAACT +
Preference number: 4 (lower is better)
Translates to: WWGLIGTLTQCEEFGNLPSGRGR*QVVLGT
Trigger: AGTTCCCAATACCACCTGTCACCTCCCACGGCCTGA...AGGAAGATTTCCAAATTCCTCACACTGTGTCAAGGTCCCAATCAGCCCCCACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp AAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGGAAGATAGAGGTGAGTaGGCTCATGAGGGCAGCCAT +
Preference number: 4 (lower is better)
Translates to: KNIGLDAPHGLFHAQPLWEDRGE*AHEGSH
Trigger: ATGGCTGCCCTCATGAGCTCACTCACCTCTATCTTC...CCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGAAGCTGTGAGGCCCCCTaGAATGGTGTAGACAGCTGT +
Preference number: 4 (lower is better)
Translates to: ERELELETQCESYCVTWGSCEAP*NGVDSC
Trigger: ACAGCTGTCTACACCATTGCAGGGGGCCTCACAGCT...TCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp CCAGAGCACAAAAGGCACAGGGCCTGTAAGAGTGTTATAATCCAACAAGCATCTCAGCTCTTGCTCCGATaGCTGCCTGCGGAAGCGCTG +
Preference number: 4 (lower is better)
Translates to: PEHKRHRACKSVIIQQASQLLLR*LPAEAL
Trigger: CAGCGCTTCCGCAGGCAGGCATCGGAGCAAGAGCTG...AGATGCTTGTTGGATTATAACACTCTTACAGGCCCTGTGCCTTTTGTGCTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp CTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCTTGCCCCTGAGTGGTGTTTaGTTCTTCCTCATCTCCTGC +
Preference number: 4 (lower is better)
Translates to: LWSAVSLASWKESLPLVLPLSGV*FFLISC
Trigger: GCAGGAGATGAGGAAGAAGCAAACACCACTCAGGGG...CAAGACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp AACTCCACAACTCTCTTCCCCACCATCCAGAGCACAAAAGGCACAGGGCCTGTACCCCTGAGTGGTGTTTaGTTCTTCCTCATCTCCTGC +
Preference number: 4 (lower is better)
Translates to: NSTTLFPTIQSTKGTGPVPLSGV*FFLISC
Trigger: GCAGGAGATGAGGAAGAAGCAAACACCACTCAGGGG...TACAGGCCCTGTGCCTTTTGTGCTCTGGATGGTGGGGAAGAGAGTTGTGGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp AAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGGCACGGAGCCTCCCTTaGCATGTGAAAGATTCTTGG +
Preference number: 4 (lower is better)
Translates to: KNIGLDAPHGLFHAQPLWARSLP*HVKDSW
Trigger: CCAAGAATCTTTCACATGCCAAGGGAGGCTCCGTGC...CCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp CACAACTCTCTTCCCCACCATCCAGAGCACAAAAGGCACAGGGCCTGTAAGAGTTGGAGCATCCAACTCTaGCCCCACACACTCTTTGAC +
Preference number: 4 (lower is better)
Translates to: HNSLPHHPEHKRHRACKSWSIQL*PHTLFD
Trigger: GTCAAAGAGTGTGTGGGGCCAGAGTTGGATGCTCCA...ACTCTTACAGGCCCTGTGCCTTTTGTGCTCTGGATGGTGGGGAAGAGAGTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp AACTCCACAACTCTCTTCCCCACCATCCAGAGCACAAAAGGCACAGGGCCTGTATGGGGTAGGCAATATTaGAGCATCCAACTCTGGCCC +
Preference number: 4 (lower is better)
Translates to: NSTTLFPTIQSTKGTGPVWGRQY*SIQLWP
Trigger: GGGCCAGAGTTGGATGCTCCAATATTGCCTACCCCA...TACAGGCCCTGTGCCTTTTGTGCTCTGGATGGTGGGGAAGAGAGTTGTGGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp TGGTGGGGGCTGATTGGGACCTTGACACAGTGTGAGGAATTTGGAAATCTTCCTCCAAGGCCATCTGGATaGAGAGGGCTCCAGAGAAGA +
Preference number: 4 (lower is better)
Translates to: WWGLIGTLTQCEEFGNLPPRPSG*RGLQRR
Trigger: TCTTCTCTGGAGCCCTCTTCATCCAGATGGCCTTGG...AGGAAGATTTCCAAATTCCTCACACTGTGTCAAGGTCCCAATCAGCCCCCACCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGAGAGCTCCCCCAACCATaGTCACAGTCTGTAGAGCAT +
Preference number: 4 (lower is better)
Translates to: ERELELETQCESYCVTWGELPQP*SQSVEH
Trigger: ATGCTCTACAGACTGTGATCATGGTTGGGGGAGCTC...TCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CAGGGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACGCCTCCCTTGGCATGTaGAAGATTCTTGGCCGCGAG +
Preference number: 4 (lower is better)
Translates to: QGSIVERELELETQCESYASLGM*KILGRE
Trigger: CTCGCGGCCAAGAATCTTTCACATGCCAAGGGAGGC...GTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGCAGGAAGAGGGCTGTaGTGGGTGGGGCTAAGTAGC +
Preference number: 4 (lower is better)
Translates to: GSIVERELELETQCESYCAGRGL*WVGLSS
Trigger: GCTACTTAGCCCCACCCATCACAGCCCTCTTCCTGC...ACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GGAGTGCCTCAGTCTCTCAGGAAATGGAAGGTACGTTGTGTACCAGGAACCATGTTGGCCACCAGGTCATaGATCTCCCAGCCAGGAAAT +
Preference number: 4 (lower is better)
Translates to: GVPQSLRKWKVRCVPGTMLATRS*ISQPGN
Trigger: ATTTCCTGGCTGGGAGATCCATGACCTGGTGGCCAA...CATGGTTCCTGGTACACAACGTACCTTCCATTTCCTGAGAGACTGAGGCACTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GCCTGCCTCTGGTCTTGGGGACTGACCAGGGTTCAGGGGTTCTTACTCATTTCACACTGCCCACATTGCTaGACATTAGAGATGCTCCAA +
Preference number: 4 (lower is better)
Translates to: ACLWSWGLTRVQGFLLISHCPHC*TLEMLQ
Trigger: TTGGAGCATCTCTAATGTCCAGCAATGTGGGCAGTG...TGAAATGAGTAAGAACCCCTGAACCCTGGTCAGTCCCCAAGACCAGAGGCAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp CTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCTTGGTGGGAGGTGACAGGTaGTATTGGGAACTGTGGTAT +
Preference number: 4 (lower is better)
Translates to: LWSAVSLASWKESLPLVLVGGDR*YWELWY
Trigger: ATACCACAGTTCCCAATACCACCTGTCACCTCCCAC...CAAGACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp AAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGGTGGGAGGTGACAGGTaGTATTGGGAACTGTGGTAT +
Preference number: 4 (lower is better)
Translates to: KNIGLDAPHGLFHAQPLWVGGDR*YWELWY
Trigger: ATACCACAGTTCCCAATACCACCTGTCACCTCCCAC...CCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGAGCACGGAGCCTCCCTTaGCATGTGAAAGATTCTTGG +
Preference number: 4 (lower is better)
Translates to: ERELELETQCESYCVTWGARSLP*HVKDSW
Trigger: CCAAGAATCTTTCACATGCCAAGGGAGGCTCCGTGC...TCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGATGGAGCATCCAACTCTaGCCCCACACACTCTTTGAC +
Preference number: 4 (lower is better)
Translates to: ERELELETQCESYCVTWGWSIQL*PHTLFD
Trigger: GTCAAAGAGTGTGTGGGGCCAGAGTTGGATGCTCCA...TCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGAGATCCTAGTGATTGGGGTAGGCAATATTaGAGCATCCAACTCTGGCCC +
Preference number: 4 (lower is better)
Translates to: ELETQCESYCVTWGDPSDWGRQY*SIQLWP
Trigger: GGGCCAGAGTTGGATGCTCCAATATTGCCTACCCCA...ATCACTAGGATCTCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGAGATCCTAGTGATGCTGCCACACATCTATaGCAAACAGGGTGCTACTGC +
Preference number: 4 (lower is better)
Translates to: ELETQCESYCVTWGDPSDAATHL*QTGCYC
Trigger: GCAGTAGCACCCTGTTTGCCATAGATGTGTGGCAGC...ATCACTAGGATCTCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CAGCCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGTTGTTGTCTCAGTTCTaGCTCCATTCCTTGACACTC +
Preference number: 4 (lower is better)
Translates to: QPLWSAVSLASWKESLPLLLSQF*LHSLTL
Trigger: GAGTGTCAAGGAATGGAGTCAGAACTGAGACAACAA...CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp ATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCGCCTCCCTTGGCATGTaGAAGATTCTTGGCCGCGAG +
Preference number: 4 (lower is better)
Translates to: IVERELELETQCESYCVTASLGM*KILGRE
Trigger: CTCGCGGCCAAGAATCTTTCACATGCCAAGGGAGGC...GGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GCACTTGTCTCTATACCTGTGCTCTTCACTGTAATGGGATTGGCAGGCACAACGTATTGGAGCTCTGGATaGTGGGGATCCAGAGGATGC +
Preference number: 4 (lower is better)
Translates to: ALVSIPVLFTVMGLAGTTYWSSG*WGSRGC
Trigger: GCATCCTCTGGATCCCCATCATCCAGAGCTCCAATA...CGTTGTGCCTGCCAATCCCATTACAGTGAAGAGCACAGGTATAGAGACAAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GGTAGGATTACAGGGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTACCACTGGCCTCCCTaGCAGTCCTGGAGAGTTGTC +
Preference number: 4 (lower is better)
Translates to: GRITGQYSRKRVGIGDPVYHWPP*QSWRVV
Trigger: GACAACTCTCCAGGACTGGCAGGGAGGCCAGTGGTA...CACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTGTAATCCTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGAATGCTGGTCAGCTTCTaGTCCAACACAGCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: ERELELETQCESYCVTWGMLVSF*SNTAFS
Trigger: TGAGAAGGCTGTGTTGGAGCAGAAGCTGACCAGCAT...TCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp AAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGCACTGCCCACATTGCTaGACATTAGAGATGCTCCAA +
Preference number: 4 (lower is better)
Translates to: KNIGLDAPHGLFHAQPLWHCPHC*TLEMLQ
Trigger: TTGGAGCATCTCTAATGTCCAGCAATGTGGGCAGTG...CCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp AAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGACTGACATGTACACCTaGATCCTCTGTCCCCCAAAT +
Preference number: 4 (lower is better)
Translates to: KNIGLDAPHGLFHAQPLWTDMYT*ILCPPN
Trigger: ATTTGGGGGACAGAGGATCCAGGTGTACATGTCAGT...CCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGATGGTATTGGGAACTGTaGTATTGGGGATGGCCTGTC +
Preference number: 4 (lower is better)
Translates to: ERELELETQCESYCVTWGWYWEL*YWGWPV
Trigger: GACAGGCCATCCCCAATACCACAGTTCCCAATACCA...TCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGAGGTGACAGGTGGTATTaGGAACTGTGGTATTGGGGA +
Preference number: 4 (lower is better)
Translates to: ERELELETQCESYCVTWGGDRWY*ELWYWG
Trigger: TCCCCAATACCACAGTTCCCAATACCACCTGTCACC...TCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGGAGATCCTAGTGATGCCAAAAATGAGACCTaGCCAGGGGATGTCTCCATT +
Preference number: 4 (lower is better)
Translates to: ELETQCESYCVTWGDPSDAKNET*PGDVSI
Trigger: AATGGAGACATCCCCTGGCCAGGTCTCATTTTTGGC...ATCACTAGGATCTCCCCAGGTCACACAGTAGGACTCACACTGGGTCTCCAATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp CATGATAAGACCCTCCTCACTGGACTCATCTTACTGGGAGCTAAGGAGGCAAAGCTCTGCACAATCACCTaGTCTGTGCACCAACACCAG +
Preference number: 4 (lower is better)
Translates to: HDKTLLTGLILLGAKEAKLCTIT*SVHQHQ
Trigger: CTGGTGTTGGTGCACAGACCAGGTGATTGTGCAGAG...CTTTGCCTCCTTAGCTCCCAGTAAGATGAGTCCAGTGAGGAGGGTCTTATCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GCAACCAATGGCATGATAAGACCCTCCTCACTGGACTCATCTTACTGGGAGCTAGCACGGAGCCTCCCTTaGCATGTGAAAGATTCTTGG +
Preference number: 4 (lower is better)
Translates to: ATNGMIRPSSLDSSYWELARSLP*HVKDSW
Trigger: CCAAGAATCTTTCACATGCCAAGGGAGGCTCCGTGC...TAGCTCCCAGTAAGATGAGTCCAGTGAGGAGGGTCTTATCATGCCATTGGTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp TGGTGGGGGCTGATTGGGACCTTGACACAGTGTGAGGAATTTGGAAATCTTCCTACAGGCAACTTCATCTaGGTACAGGGCCCTGCTGAT +
Preference number: 4 (lower is better)
Translates to: WWGLIGTLTQCEEFGNLPTGNFI*VQGPAD
Trigger: ATCAGCAGGGCCCTGTACCCAGATGAAGTTGCCTGT...AGGAAGATTTCCAAATTCCTCACACTGTGTCAAGGTCCCAATCAGCCCCCACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CAGGGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACGAGCTCCCCCAACCATaGTCACAGTCTGTAGAGCAT +
Preference number: 4 (lower is better)
Translates to: QGSIVERELELETQCESYELPQP*SQSVEH
Trigger: ATGCTCTACAGACTGTGATCATGGTTGGGGGAGCTC...GTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp TTAGCCTACACACATGAGACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCGCCCCACACACTCTTTaGCAGATGTCAGGGTCCACA +
Preference number: 4 (lower is better)
Translates to: LAYTHETQLLLIPECHLSAPHTL*QMSGST
Trigger: TGTGGACCCTGACATCTGTCAAAGAGTGTGTGGGGC...GGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGTCTCATGTGTGTAGGCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp TGGTGGGGGCTGATTGGGACCTTGACACAGTGTGAGGAATTTGGAAATCTTCCTGGTGACCACACCAGCTaGTATGTACACAGGGACAAA +
Preference number: 4 (lower is better)
Translates to: WWGLIGTLTQCEEFGNLPGDHTS*YVHRDK
Trigger: TTTGTCCCTGTGTACATAGCAGCTGGTGTGGTCACC...AGGAAGATTTCCAAATTCCTCACACTGTGTCAAGGTCCCAATCAGCCCCCACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp TCCATGATTCTGTACACCTACCTATGTCAAAGCCAACTTGCTCATCACCTGTGTGCCGCGAGAGACCTCTaGACAATCACCTGGTCTGTG +
Preference number: 4 (lower is better)
Translates to: SMILYTYLCQSQLAHHLCAARDL*TITWSV
Trigger: CACAGACCAGGTGATTGTGCAGAGGTCTCTCGCGGC...ACACAGGTGATGAGCAAGTTGGCTTTGACATAGGTAGGTGTACAGAATCATGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTTGCCTGCGGAAGCGCTaGCACACATCTATGGCAAAC +
Preference number: 4 (lower is better)
Translates to: GSIVERELELETQCESYCCLRKR*HTSMAN
Trigger: GTTTGCCATAGATGTGTGGCAGCGCTTCCGCAGGCA...ACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp ACCTGGGGAGATCCTAGTGATCGCTCTAGTACTTTGTATCTCTACTTGACAAGACAGCCCAAGGCCATCTaGATGAAGAGGGCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: TWGDPSDRSSTLYLYLTRQPKAI*MKRAPE
Trigger: CTCTGGAGCCCTCTTCATCCAGATGGCCTTGGGCTG...TCTTGTCAAGTAGAGATACAAAGTACTAGAGCGATCACTAGGATCTCCCCAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp ATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCGAAGGCATCAGGCCGTaGGAGGTGACAGGTGGTATT +
Preference number: 4 (lower is better)
Translates to: IVERELELETQCESYCVTEGIRP*EVTGGI
Trigger: AATACCACCTGTCACCTCCCACGGCCTGATGCCTTC...GGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp ACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCAGAAGCCAACTCCACAACCCACTATTGGAGCTCTaGATGATGGGGATCCAGAGG +
Preference number: 4 (lower is better)
Translates to: TQLLLIPECHLSRSQLHNPLLEL*MMGIQR
Trigger: CCTCTGGATCCCCATCATCCAGAGCTCCAATAGTGG...GTTGTGGAGTTGGCTTCTGGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR CAA 72 bp GGGAGTGCCTCAGTCTCTCAGGAAATGGAAGGTACGTaGTGTACCAGGAACCATGGACTCTACCCTGAAAAA +
Preference number: 4 (lower is better)
Translates to: GSASVSQEMEGT*CTRNHGLYPEK
Trigger: TTTTTCAGGGTAGAGTCCATGGTTCCTGGTACACAACGTACCTTCCATTTCCTGAGAGACTGAGGCACTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCTTGCAAAGACAAAATAGATaGCCACCACCACGATGTCAT +
Preference number: 4 (lower is better)
Translates to: LWSAVSLASWKESLPLVLQRQNR*PPPRCH
Trigger: ATGACATCGTGGTGGTGGTCATCTATTTTGTCTTTG...CAAGACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GGTAGGATTACAGGGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGGAAGATAGAGGTGAGTaGGCTCATGAGGGCAGCCAT +
Preference number: 4 (lower is better)
Translates to: GRITGQYSRKRVGIGDPVEDRGE*AHEGSH
Trigger: ATGGCTGCCCTCATGAGCTCACTCACCTCTATCTTC...CACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTGTAATCCTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTTATTGGAGCTCTGGATaGTGGGGATCCAGAGGATGC +
Preference number: 4 (lower is better)
Translates to: GSIVERELELETQCESYCYWSSG*WGSRGC
Trigger: GCATCCTCTGGATCCCCATCATCCAGAGCTCCAATA...ACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GGTAGGATTACAGGGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTATTGGAGCTCTGGATaGTGGGGATCCAGAGGATGC +
Preference number: 4 (lower is better)
Translates to: GRITGQYSRKRVGIGDPVYWSSG*WGSRGC
Trigger: GCATCCTCTGGATCCCCATCATCCAGAGCTCCAATA...CACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTGTAATCCTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp TGTGAGGAATTTGGAAATCTTCCTGGGAAGTTAAGGACATGGTCTCAGGTATATGCAGGAAGAGGGCTGTaGTGGGTGGGGCTAAGTAGC +
Preference number: 4 (lower is better)
Translates to: CEEFGNLPGKLRTWSQVYAGRGL*WVGLSS
Trigger: GCTACTTAGCCCCACCCATCACAGCCCTCTTCCTGC...ATATACCTGAGACCATGTCCTTAACTTCCCAGGAAGATTTCCAAATTCCTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp ATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTTGGCCACCAGGTCATaGATCTCCCAGCCAGGAAAT +
Preference number: 4 (lower is better)
Translates to: IVERELELETQCESYCVTLATRS*ISQPGN
Trigger: ATTTCCTGGCTGGGAGATCCATGACCTGGTGGCCAA...GGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTTTGGCCACCAGGTCATaGATCTCCCAGCCAGGAAAT +
Preference number: 4 (lower is better)
Translates to: GSIVERELELETQCESYCLATRS*ISQPGN
Trigger: ATTTCCTGGCTGGGAGATCCATGACCTGGTGGCCAA...ACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp CAGGGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGGTATTGGGAACTGTaGTATTGGGGATGGCCTGTC +
Preference number: 4 (lower is better)
Translates to: QGSIVERELELETQCESYWYWEL*YWGWPV
Trigger: GACAGGCCATCCCCAATACCACAGTTCCCAATACCA...GTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp CAGGGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACGGTGACAGGTGGTATTaGGAACTGTGGTATTGGGGA +
Preference number: 4 (lower is better)
Translates to: QGSIVERELELETQCESYGDRWY*ELWYWG
Trigger: TCCCCAATACCACAGTTCCCAATACCACCTGTCACC...GTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp ATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCCTCTGCACAATCACCTaGTCTGTGCACCAACACCAG +
Preference number: 4 (lower is better)
Translates to: IVERELELETQCESYCVTLCTIT*SVHQHQ
Trigger: CTGGTGTTGGTGCACAGACCAGGTGATTGTGCAGAG...GGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp TACACACATGAGACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCAGAAGCTGGGGTAGGCAATATTaGAGCATCCAACTCTGGCCC +
Preference number: 4 (lower is better)
Translates to: YTHETQLLLIPECHLSRSWGRQY*SIQLWP
Trigger: GGGCCAGAGTTGGATGCTCCAATATTGCCTACCCCA...GCTTCTGGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGTCTCATGTGTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GTATCTCTACTTGACAAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACCCACTATTGGAGCTCTaGATGATGGGGATCCAGAGG +
Preference number: 4 (lower is better)
Translates to: VSLLDKNIGLDAPHGLFHPLLEL*MMGIQR
Trigger: CCTCTGGATCCCCATCATCCAGAGCTCCAATAGTGG...GTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTTGTCAAGTAGAGATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR CAA 72 bp AGGACATGGTCTCAGGTATATTTCAAGGAAGGAGTCTaGGCAAGTAAAGGCAGAGGGATAAGGGCCATGGTG +
Preference number: 4 (lower is better)
Translates to: RTWSQVYFKEGV*ASKGRGIRAMV
Trigger: CACCATGGCCCTTATCCCTCTGCCTTTACTTGCCAAGACTCCTTCCTTGAAATATACCTGAGACCATGTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp TACACACATGAGACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCAGAAGCTCTGACTCCATTCCTTaGCACTCCTGGTTCCATTGC +
Preference number: 4 (lower is better)
Translates to: YTHETQLLLIPECHLSRSSDSIP*HSWFHC
Trigger: GCAATGGAACCAGGAGTGTCAAGGAATGGAGTCAGA...GCTTCTGGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGTCTCATGTGTGTA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp ATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCCACTCCTGGTTCCATTaGCACAAGCTCCGTGTTCAT +
Preference number: 4 (lower is better)
Translates to: IVERELELETQCESYCVTHSWFH*HKLRVH
Trigger: ATGAACACGGAGCTTGTGGCAATGGAACCAGGAGTG...GGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTCACTCCTGGTTCCATTaGCACAAGCTCCGTGTTCAT +
Preference number: 4 (lower is better)
Translates to: GSIVERELELETQCESYCHSWFH*HKLRVH
Trigger: ATGAACACGGAGCTTGTGGCAATGGAACCAGGAGTG...ACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp GTATCTCTACTTGACAAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGGTGACCACACCAGCTaGTATGTACACAGGGACAAA +
Preference number: 4 (lower is better)
Translates to: VSLLDKNIGLDAPHGLFHGDHTS*YVHRDK
Trigger: TTTGTCCCTGTGTACATAGCAGCTGGTGTGGTCACC...GTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTTGTCAAGTAGAGATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp GGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTTTTCTTCAGGTACTGTaGCATGGTGACCACACCAGC +
Preference number: 4 (lower is better)
Translates to: GSIVERELELETQCESYCFLQVL*HGDHTS
Trigger: GCTGGTGTGGTCACCATGCCACAGTACCTGAAGAAA...ACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp TACACACATGAGACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCAGAAGCTTTCTTCAGGTACTGTaGCATGGTGACCACACCAGC +
Preference number: 4 (lower is better)
Translates to: YTHETQLLLIPECHLSRSFLQVL*HGDHTS
Trigger: GCTGGTGTGGTCACCATGCCACAGTACCTGAAGAAA...GCTTCTGGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGTCTCATGTGTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp ACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCAGAAGCCAACTCCACAACACTGACATGTACACCTaGATCCTCTGTCCCCCAAAT +
Preference number: 4 (lower is better)
Translates to: TQLLLIPECHLSRSQLHNTDMYT*ILCPPN
Trigger: ATTTGGGGGACAGAGGATCCAGGTGTACATGTCAGT...GTTGTGGAGTTGGCTTCTGGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp TACACACATGAGACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCAGAAGCTGGTATTGGGAACTGTaGTATTGGGGATGGCCTGTC +
Preference number: 4 (lower is better)
Translates to: YTHETQLLLIPECHLSRSWYWEL*YWGWPV
Trigger: GACAGGCCATCCCCAATACCACAGTTCCCAATACCA...GCTTCTGGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGTCTCATGTGTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp TACACACATGAGACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCAGAAGCGCCAAAAATGAGACCTaGCCAGGGGATGTCTCCATT +
Preference number: 4 (lower is better)
Translates to: YTHETQLLLIPECHLSRSAKNET*PGDVSI
Trigger: AATGGAGACATCCCCTGGCCAGGTCTCATTTTTGGC...GCTTCTGGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGTCTCATGTGTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp ACCTGGGGAGATCCTAGTGATCGCTCTAGTACTTTGTATCTCTACTTGACAAGAACAGGCAACTTCATCTaGGTACAGGGCCCTGCTGAT +
Preference number: 4 (lower is better)
Translates to: TWGDPSDRSSTLYLYLTRTGNFI*VQGPAD
Trigger: ATCAGCAGGGCCCTGTACCCAGATGAAGTTGCCTGT...TCTTGTCAAGTAGAGATACAAAGTACTAGAGCGATCACTAGGATCTCCCCAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp ACCTGGGGAGATCCTAGTGATCGCTCTAGTACTTTGTATCTCTACTTGACAAGAGCTGCCACACATCTATaGCAAACAGGGTGCTACTGC +
Preference number: 4 (lower is better)
Translates to: TWGDPSDRSSTLYLYLTRAATHL*QTGCYC
Trigger: GCAGTAGCACCCTGTTTGCCATAGATGTGTGGCAGC...TCTTGTCAAGTAGAGATACAAAGTACTAGAGCGATCACTAGGATCTCCCCAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp CCAGAGCACAAAAGGCACAGGGCCTGTAAGAGTGTTATAATCCAACAAGCATCTGTTCAGGCCCCTGAGTaGTGTTTGCTTCTTCCTCAT +
Preference number: 4 (lower is better)
Translates to: PEHKRHRACKSVIIQQASVQAPE*CLLLPH
Trigger: ATGAGGAAGAAGCAAACACCACTCAGGGGCCTGAAC...AGATGCTTGTTGGATTATAACACTCTTACAGGCCCTGTGCCTTTTGTGCTCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp ACCTGGGGAGATCCTAGTGATCGCTCTAGTACTTTGTATCTCTACTTGACAAGATCTGACTCCATTCCTTaGCACTCCTGGTTCCATTGC +
Preference number: 4 (lower is better)
Translates to: TWGDPSDRSSTLYLYLTRSDSIP*HSWFHC
Trigger: GCAATGGAACCAGGAGTGTCAAGGAATGGAGTCAGA...TCTTGTCAAGTAGAGATACAAAGTACTAGAGCGATCACTAGGATCTCCCCAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp ACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCAGAAGCCAACTCCACAACTTGTTGTCTCAGTTCTaGCTCCATTCCTTGACACTC +
Preference number: 4 (lower is better)
Translates to: TQLLLIPECHLSRSQLHNLLSQF*LHSLTL
Trigger: GAGTGTCAAGGAATGGAGTCAGAACTGAGACAACAA...GTTGTGGAGTTGGCTTCTGGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GCAACCAATGGCATGATAAGACCCTCCTCACTGGACTCATCTTACTGGGAGCTACAAAGACAAAATAGATaGCCACCACCACGATGTCAT +
Preference number: 4 (lower is better)
Translates to: ATNGMIRPSSLDSSYWELQRQNR*PPPRCH
Trigger: ATGACATCGTGGTGGTGGTCATCTATTTTGTCTTTG...TAGCTCCCAGTAAGATGAGTCCAGTGAGGAGGGTCTTATCATGCCATTGGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GCAACCAATGGCATGATAAGACCCTCCTCACTGGACTCATCTTACTGGGAGCTAAATGAGAGAAAGAACTaGCATGTACACCTGGATCCT +
Preference number: 4 (lower is better)
Translates to: ATNGMIRPSSLDSSYWELNERKN*HVHLDP
Trigger: AGGATCCAGGTGTACATGTCAGTTCTTTCTCTCATT...TAGCTCCCAGTAAGATGAGTCCAGTGAGGAGGGTCTTATCATGCCATTGGTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CCAGAGCACAAAAGGCACAGGGCCTGTAAGAGTGTTATAATCCAACAAGCATCTTCACCACCAGCAAGATaGCTGTGGAGAGATAGAGAT +
Preference number: 4 (lower is better)
Translates to: PEHKRHRACKSVIIQQASSPPAR*LWRDRD
Trigger: ATCTCTATCTCTCCACAGTCATCTTGCTGGTGGTGA...AGATGCTTGTTGGATTATAACACTCTTACAGGCCCTGTGCCTTTTGTGCTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp ATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTGGGAACTGTGGTATTaGGGATGGCCTGTCTATAGA +
Preference number: 4 (lower is better)
Translates to: IVERELELETQCESYCVTWELWY*GWPVYR
Trigger: TCTATAGACAGGCCATCCCCAATACCACAGTTCCCA...GGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp TTAGCCTACACACATGAGACTCAGCTGCTTCTGATACCTGAATGTCATCTCTCCTGGGAACTGTGGTATTaGGGATGGCCTGTCTATAGA +
Preference number: 4 (lower is better)
Translates to: LAYTHETQLLLIPECHLSWELWY*GWPVYR
Trigger: TCTATAGACAGGCCATCCCCAATACCACAGTTCCCA...GGAGAGATGACATTCAGGTATCAGAAGCAGCTGAGTCTCATGTGTGTAGGCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp TGTGAGGAATTTGGAAATCTTCCTGGGAAGTTAAGGACATGGTCTCAGGTATATGAAGGCATCAGGCCGTaGGAGGTGACAGGTGGTATT +
Preference number: 4 (lower is better)
Translates to: CEEFGNLPGKLRTWSQVYEGIRP*EVTGGI
Trigger: AATACCACCTGTCACCTCCCACGGCCTGATGCCTTC...ATATACCTGAGACCATGTCCTTAACTTCCCAGGAAGATTTCCAAATTCCTCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR CAA 72 bp GAGGTAGGATTACAGGGCAGTATAGTAGAAAGAGAGTaGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTG +
Preference number: 4 (lower is better)
Translates to: EVGLQGSIVERE*ELETQCESYCV
Trigger: CACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTGTAATCCTACCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR CAA 72 bp CTTGTCTCTATACCTGTGCTCTTCACTGTAATGGGATaGGCAGGCACAACGGCAACCAATGGCATGATAAGA +
Preference number: 4 (lower is better)
Translates to: LVSIPVLFTVMG*AGTTATNGMIR
Trigger: TCTTATCATGCCATTGGTTGCCGTTGTGCCTGCCAATCCCATTACAGTGAAGAGCACAGGTATAGAGACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR CAA 72 bp AGCAGAATTAGAGCTATGCCAAGGAGAATCCTGGTCTaGGAGCACTTGTCTCTATACCTGTGCTCTTCACTG +
Preference number: 4 (lower is better)
Translates to: SRIRAMPRRILV*EHLSLYLCSSL
Trigger: CAGTGAAGAGCACAGGTATAGAGACAAGTGCTCCAAGACCAGGATTCTCCTTGGCATAGCTCTAATTCTGCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp CAGGGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACAATGAGAGAAAGAACTaGCATGTACACCTGGATCCT +
Preference number: 4 (lower is better)
Translates to: QGSIVERELELETQCESYNERKN*HVHLDP
Trigger: AGGATCCAGGTGTACATGTCAGTTCTTTCTCTCATT...GTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp AATCCAACAAGCATCTATTGCCTTCTTTTGTTGATAGGTACAAAGTCAGGTTGTTACCACTGGCCTCCCTaGCAGTCCTGGAGAGTTGTC +
Preference number: 4 (lower is better)
Translates to: NPTSIYCLLLLIGTKSGCYHWPP*QSWRVV
Trigger: GACAACTCTCCAGGACTGGCAGGGAGGCCAGTGGTA...ACAACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GGTAGGATTACAGGGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGCAAAGACAAAATAGATaGCCACCACCACGATGTCAT +
Preference number: 4 (lower is better)
Translates to: GRITGQYSRKRVGIGDPVQRQNR*PPPRCH
Trigger: ATGACATCGTGGTGGTGGTCATCTATTTTGTCTTTG...CACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCCCTGTAATCCTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp GGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTAATGAGAGAAAGAACTaGCATGTACACCTGGATCCT +
Preference number: 4 (lower is better)
Translates to: GSIVERELELETQCESYCNERKN*HVHLDP
Trigger: AGGATCCAGGTGTACATGTCAGTTCTTTCTCTCATT...ACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp AATCCAACAAGCATCTATTGCCTTCTTTTGTTGATAGGTACAAAGTCAGGTTGTTTCTTCCTCATCTCCTaGAGGGCCCTCTACCACTGG +
Preference number: 4 (lower is better)
Translates to: NPTSIYCLLLLIGTKSGCFFLIS*RALYHW
Trigger: CCAGTGGTAGAGGGCCCTGCAGGAGATGAGGAAGAA...ACAACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp TATAATCCAACAAGCATCTATTGCCTTCTTTTGTTGATAGGTACAAAGTCAGGTCAGCCCAAGGCCATCTaGATGAAGAGGGCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: YNPTSIYCLLLLIGTKSGQPKAI*MKRAPE
Trigger: CTCTGGAGCCCTCTTCATCCAGATGGCCTTGGGCTG...ACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGATTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp TCCAACAAGCATCTATTGCCTTCTTTTGTTGATAGGTACAAAGTCAGGTTGTGCTCACCACCAGCAAGATaGCTGTGGAGAGATAGAGAT +
Preference number: 4 (lower is better)
Translates to: SNKHLLPSFVDRYKVRLCSPPAR*LWRDRD
Trigger: ATCTCTATCTCTCCACAGTCATCTTGCTGGTGGTGA...GCACAACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp TGTGAGGAATTTGGAAATCTTCCTGGGAAGTTAAGGACATGGTCTCAGGTATATTGGGAACTGTGGTATTaGGGATGGCCTGTCTATAGA +
Preference number: 4 (lower is better)
Translates to: CEEFGNLPGKLRTWSQVYWELWY*GWPVYR
Trigger: TCTATAGACAGGCCATCCCCAATACCACAGTTCCCA...ATATACCTGAGACCATGTCCTTAACTTCCCAGGAAGATTTCCAAATTCCTCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR TCA 90 bp TATAATCCAACAAGCATCTATTGCCTTCTTTTGTTGATAGGTACAAAGTCAGGTTACCAGCCAACCTCCTaGAAGCCCAGAAACATGAGG +
Preference number: 4 (lower is better)
Translates to: YNPTSIYCLLLLIGTKSGYQPTS*KPRNMR
Trigger: CCTCATGTTTCTGGGCTTTCAGGAGGTTGGCTGGTA...ACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGATTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR GCA 90 bp TATAATCCAACAAGCATCTATTGCCTTCTTTTGTTGATAGGTACAAAGTCAGGTCCCCTGAGTGGTGTTTaGTTCTTCCTCATCTCCTGC +
Preference number: 4 (lower is better)
Translates to: YNPTSIYCLLLLIGTKSGPLSGV*FFLISC
Trigger: GCAGGAGATGAGGAAGAAGCAAACACCACTCAGGGG...ACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGATTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CCA 90 bp TATAATCCAACAAGCATCTATTGCCTTCTTTTGTTGATAGGTACAAAGTCAGGTACTGACATGTACACCTaGATCCTCTGTCCCCCAAAT +
Preference number: 4 (lower is better)
Translates to: YNPTSIYCLLLLIGTKSGTDMYT*ILCPPN
Trigger: ATTTGGGGGACAGAGGATCCAGGTGTACATGTCAGT...ACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGATTATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
3UTR CAA 72 bp GAGTGTTATAATCCAACAAGCATCTATTGCCTTCTTTaGTTGATAGGTACAAAGTCAGGTTGTGCATCTCCA +
Preference number: 4 (lower is better)
Translates to: ECYNPTSIYCLL*LIGTKSGCASP
Trigger: TGGAGATGCACAACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGATTATAACACTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS GCA 90 bp TGGTTGTTCAGGCCCCTGAGTGGTGTTTGCTTCTTCCTCATCTCCTaGAGGGCCCTCTACCACTGGCCTCCCTGCCAGTCCTGGAGAGTT +
Preference number: 5 (lower is better)
Translates to: WLFRPLSGVCFFLIS*RALYHWPPCQSWRV
Trigger: AACTCTCCAGGACTGGCAGGGAGGCCAGTGGTAGAGGGCCCTGCAGGAGATGAGGAAGAAGCAAACACCACTCAGGGGCCTGAACAACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CCA 90 bp GCCGTGGGAGGTGACAGGTGGTATTGGGAACTGTGGTATTGGGGATaGCCTGTCTATAGAGCTGCTGCAGGCCTGGGTACCAGCCAACCT +
Preference number: 5 (lower is better)
Translates to: AVGGDRWYWELWYWG*PVYRAAAGLGTSQP
Trigger: AGGTTGGCTGGTACCCAGGCCTGCAGCAGCTCTATAGACAGGCCATCCCCAATACCACAGTTCCCAATACCACCTGTCACCTCCCACGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 90 bp GGAAGGCATCAGGCCGTGGGAGGTGACAGGTGGTATTGGGAACTGTaGTATTGGGGATGGCCTGTCTATAGAGCTGCTGCAGGCCTGGGT +
Preference number: 5 (lower is better)
Translates to: GRHQAVGGDRWYWEL*YWGWPVYRAAAGLG
Trigger: ACCCAGGCCTGCAGCAGCTCTATAGACAGGCCATCCCCAATACCACAGTTCCCAATACCACCTGTCACCTCCCACGGCCTGATGCCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 90 bp TTCCCCAGGACCTGTGTAGGGCTCCTGGTTGTTCAGGCCCCTGAGTaGTGTTTGCTTCTTCCTCATCTCCTGCAGGGCCCTCTACCACTG +
Preference number: 5 (lower is better)
Translates to: FPRTCVGLLVVQAPE*CLLLPHLLQGPLPL
Trigger: CAGTGGTAGAGGGCCCTGCAGGAGATGAGGAAGAAGCAAACACCACTCAGGGGCCTGAACAACCAGGAGCCCTACACAGGTCCTGGGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS TCA 90 bp AACAGCTGGCCGCCTGTCCATCTCCCCACAGGCTGGGGCCGAGTATaGGAACTCCAGAATCATACGCAGTATTCCGACGACCAGGCCAAA +
Preference number: 5 (lower is better)
Translates to: NSWPPVHLPTGWGRV*ELQNHTQYSDDQAK
Trigger: TTTGGCCTGGTCGTCGGAATACTGCGTATGATTCTGGAGTTCTCATACTCGGCCCCAGCCTGTGGGGAGATGGACAGGCGGCCAGCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp ATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGGCCCCACACACTCTTaGACAGATGTCAGGGTCCAC +
Preference number: 5 (lower is better)
Translates to: IGLDAPHGLFHAQPLWSAGPTHS*TDVRVH
Trigger: GTGGACCCTGACATCTGTCAAAGAGTGTGTGGGGCC...TGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp CAGCCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGGCCCCACACACTCTTaGACAGATGTCAGGGTCCAC +
Preference number: 5 (lower is better)
Translates to: QPLWSAVSLASWKESLPLGPTHS*TDVRVH
Trigger: GTGGACCCTGACATCTGTCAAAGAGTGTGTGGGGCC...CAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp CTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCTTGTACCACCATCAGCTCTaGCTCCGATGCCTGCCTGCG +
Preference number: 5 (lower is better)
Translates to: LWSAVSLASWKESLPLVLYHHQL*LRCLPA
Trigger: CGCAGGCAGGCATCGGAGCAAGAGCTGATGGTGGTA...CAAGACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp ATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAGCCCCTGAGTGGTGTTaGCTTCTTCCTCATCTCCTG +
Preference number: 5 (lower is better)
Translates to: IGLDAPHGLFHAQPLWSAAPEWC*LLPHLL
Trigger: CAGGAGATGAGGAAGAAGCAAACACCACTCAGGGGC...TGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS GCA 90 bp CCTACCACCATCAGCTCTTGCTCCGATGCCTGCCTGCGGAAGCGCTaGCACACATCTATGGCAAACAGGGTGCTACTGCTGTTGAAGATA +
Preference number: 5 (lower is better)
Translates to: PTTISSCSDACLRKR*HTSMANRVLLLLKI
Trigger: TATCTTCAACAGCAGTAGCACCCTGTTTGCCATAGATGTGTGGCAGCGCTTCCGCAGGCAGGCATCGGAGCAAGAGCTGATGGTGGTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CCA 90 bp GAAGCATGTGGAAGGCATCAGGCCGTGGGAGGTGACAGGTGGTATTaGGAACTGTGGTATTGGGGATGGCCTGTCTATAGAGCTGCTGCA +
Preference number: 5 (lower is better)
Translates to: EACGRHQAVGGDRWY*ELWYWGWPVYRAAA
Trigger: TGCAGCAGCTCTATAGACAGGCCATCCCCAATACCACAGTTCCCAATACCACCTGTCACCTCCCACGGCCTGATGCCTTCCACATGCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 90 bp GTCTCCATTCACAGGATCTCGAAGCATGTGGAAGGCATCAGGCCGTaGGAGGTGACAGGTGGTATTGGGAACTGTGGTATTGGGGATGGC +
Preference number: 5 (lower is better)
Translates to: VSIHRISKHVEGIRP*EVTGGIGNCGIGDG
Trigger: GCCATCCCCAATACCACAGTTCCCAATACCACCTGTCACCTCCCACGGCCTGATGCCTTCCACATGCTTCGAGATCCTGTGAATGGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS-3UTR CAA 90 bp GCCTGCCTCTGGTCTTGGGGACTGACCAGGGTTCAGGGGTTCTTACTCATTTCACAACGGTCCCTCGACTaGCACGGATGGATGACCAAA +
Preference number: 5 (lower is better)
Translates to: ACLWSWGLTRVQGFLLISQRSLD*HGWMTK
Trigger: TTTGGTCATCCATCCGTGCAAGTCGAGGGACCGTTG...TGAAATGAGTAAGAACCCCTGAACCCTGGTCAGTCCCCAAGACCAGAGGCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp ATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGTCTGCAAGCACGGAGCCTCCCTaGGCATGTGAAAGATTCTTG +
Preference number: 5 (lower is better)
Translates to: IGLDAPHGLFHAQPLWSASTEPP*ACERFL
Trigger: CAAGAATCTTTCACATGCCAAGGGAGGCTCCGTGCT...TGCAGACCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS TCA 90 bp TTCACAGGATCTCGAAGCATGTGGAAGGCATCAGGCCGTGGGAGGTaGCAGGTGGTATTGGGAACTGTGGTATTGGGGATGGCCTGTCTA +
Preference number: 5 (lower is better)
Translates to: FTGSRSMWKASGRGR*QVVLGTVVLGMACL
Trigger: TAGACAGGCCATCCCCAATACCACAGTTCCCAATACCACCTGTCACCTCCCACGGCCTGATGCCTTCCACATGCTTCGAGATCCTGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 90 bp GATCTCGAAGCATGTGGAAGGCATCAGGCCGTGGGAGGTGACAGGTaGTATTGGGAACTGTGGTATTGGGGATGGCCTGTCTATAGAGCT +
Preference number: 5 (lower is better)
Translates to: DLEACGRHQAVGGDR*YWELWYWGWPVYRA
Trigger: AGCTCTATAGACAGGCCATCCCCAATACCACAGTTCCCAATACCACCTGTCACCTCCCACGGCCTGATGCCTTCCACATGCTTCGAGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 90 bp ACATTGGGAGGATCTTTAGGTAGCCCCCTAGCACGGAGCCTCCCTTaGCATGTGAAAGATTCTTGGCCGCGAGAGACCTCTGCACAATCA +
Preference number: 5 (lower is better)
Translates to: TLGGSLGSPLARSLP*HVKDSWPRETSAQS
Trigger: TGATTGTGCAGAGGTCTCTCGCGGCCAAGAATCTTTCACATGCCAAGGGAGGCTCCGTGCTAGGGGGCTACCTAAAGATCCTCCCAATGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS-3UTR CAA 90 bp AACTCCACAACTCTCTTCCCCACCATCCAGAGCACAAAAGGCACAGGGCCTGTACAACGGTCCCTCGACTaGCACGGATGGATGACCAAA +
Preference number: 5 (lower is better)
Translates to: NSTTLFPTIQSTKGTGPVQRSLD*HGWMTK
Trigger: TTTGGTCATCCATCCGTGCAAGTCGAGGGACCGTTG...TACAGGCCCTGTGCCTTTTGTGCTCTGGATGGTGGGGAAGAGAGTTGTGGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp GATAAGGGCCATGGTGTGCCCACCCCCAGGCTGTCTGCTCTGCTCCATAAGGCTTTGTCATCCTCTGTGTaGTTCACACTCACAGAGGTT +
Preference number: 5 (lower is better)
Translates to: DKGHGVPTPRLSALLHKALSSSV*FTLTEV
Trigger: AACCTCTGTGAGTGTGAACAACACAGAGGATGACAA...AGCCTTATGGAGCAGAGCAGACAGCCTGGGGGTGGGCACACCATGGCCCTTATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp AAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGGCCCCTGAGTGGTGTTaGCTTCTTCCTCATCTCCTG +
Preference number: 5 (lower is better)
Translates to: KNIGLDAPHGLFHAQPLWAPEWC*LLPHLL
Trigger: CAGGAGATGAGGAAGAAGCAAACACCACTCAGGGGC...CCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp CCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCAGCAGGATGATGGCGTaGATGTTGCAGACACGTCTC +
Preference number: 5 (lower is better)
Translates to: PLWSAVSLASWKESLPLVSRMMA*MLQTRL
Trigger: GAGACGTGTCTGCAACATCAACGCCATCATCCTGCT...GACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp CCTCTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCAAGCCACTGCCCACATaGCTGGACATTAGAGATGCT +
Preference number: 5 (lower is better)
Translates to: PLWSAVSLASWKESLPLVKPLPT*LDIRDA
Trigger: AGCATCTCTAATGTCCAGCAATGTGGGCAGTGGCTT...GACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp AAGAATATAGGACTGGATGCTCCTCACGGGCTCTTTCACGCTCAGCCTCTGTGGAGCACGGAGCCTCCCTaGGCATGTGAAAGATTCTTG +
Preference number: 5 (lower is better)
Translates to: KNIGLDAPHGLFHAQPLWSTEPP*ACERFL
Trigger: CAAGAATCTTTCACATGCCAAGGGAGGCTCCGTGCT...CCACAGAGGCTGAGCGTGAAAGAGCCCGTGAGGAGCATCCAGTCCTATATTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp CTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCTTGGCCAGTCCTGGAGAGTaGTCATCCTCTGTGTTGTTC +
Preference number: 5 (lower is better)
Translates to: LWSAVSLASWKESLPLVLASPGE*SSSVLF
Trigger: GAACAACACAGAGGATGACAACTCTCCAGGACTGGC...CAAGACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp TGGTGGGGGCTGATTGGGACCTTGACACAGTGTGAGGAATTTGGAAATCTTCCTCAACGGTCCCTCGACTaGCACGGATGGATGACCAAA +
Preference number: 5 (lower is better)
Translates to: WWGLIGTLTQCEEFGNLPQRSLD*HGWMTK
Trigger: TTTGGTCATCCATCCGTGCAAGTCGAGGGACCGTTG...AGGAAGATTTCCAAATTCCTCACACTGTGTCAAGGTCCCAATCAGCCCCCACCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp ATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCTACCACCATCAGCTCTaGCTCCGATGCCTGCCTGCG +
Preference number: 5 (lower is better)
Translates to: IVERELELETQCESYCVTYHHQL*LRCLPA
Trigger: CGCAGGCAGGCATCGGAGCAAGAGCTGATGGTGGTA...GGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp GGAGTGCCTCAGTCTCTCAGGAAATGGAAGGTACGTTGTGTACCAGGAACCATGGCCAGTCCTGGAGAGTaGTCATCCTCTGTGTTGTTC +
Preference number: 5 (lower is better)
Translates to: GVPQSLRKWKVRCVPGTMASPGE*SSSVLF
Trigger: GAACAACACAGAGGATGACAACTCTCCAGGACTGGC...CATGGTTCCTGGTACACAACGTACCTTCCATTTCCTGAGAGACTGAGGCACTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp CTGTGGTCTGCAGTTAGCCTAGCAAGTTGGAAAGAGAGCCTGCCTCTGGTCTTGCCCCAGAGAAAGATGTaGATGGCTAGCAGGATGATG +
Preference number: 5 (lower is better)
Translates to: LWSAVSLASWKESLPLVLPQRKM*MASRMM
Trigger: CATCATCCTGCTAGCCATCAACATCTTTCTCTGGGG...CAAGACCAGAGGCAGGCTCTCTTTCCAACTTGCTAGGCTAACTGCAGACCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp AACTCCACAACTCTCTTCCCCACCATCCAGAGCACAAAAGGCACAGGGCCTGTACCCCAGAGAAAGATGTaGATGGCTAGCAGGATGATG +
Preference number: 5 (lower is better)
Translates to: NSTTLFPTIQSTKGTGPVPQRKM*MASRMM
Trigger: CATCATCCTGCTAGCCATCAACATCTTTCTCTGGGG...TACAGGCCCTGTGCCTTTTGTGCTCTGGATGGTGGGGAAGAGAGTTGTGGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CCA 90 bp GTACACCTGGATCCTCTGTCCCCCAAATCGTTTCTTCAGGTACTGTaGCATGGTGACCACACCAGCTGCTATGTACACAGGGACAAAGAT +
Preference number: 5 (lower is better)
Translates to: VHLDPLSPKSFLQVL*HGDHTSCYVHRDKD
Trigger: ATCTTTGTCCCTGTGTACATAGCAGCTGGTGTGGTCACCATGCCACAGTACCTGAAGAAACGATTTGGGGGACAGAGGATCCAGGTGTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS-3UTR CAA 90 bp CATGATAAGACCCTCCTCACTGGACTCATCTTACTGGGAGCTAAGGAGGCAAAGAGCACGGAGCCTCCCTaGGCATGTGAAAGATTCTTG +
Preference number: 5 (lower is better)
Translates to: HDKTLLTGLILLGAKEAKSTEPP*ACERFL
Trigger: CAAGAATCTTTCACATGCCAAGGGAGGCTCCGTGCT...CTTTGCCTCCTTAGCTCCCAGTAAGATGAGTCCAGTGAGGAGGGTCTTATCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp ACCTGGGGAGATCCTAGTGATCGCTCTAGTACTTTGTATCTCTACTTGACAAGATACCACCATCAGCTCTaGCTCCGATGCCTGCCTGCG +
Preference number: 5 (lower is better)
Translates to: TWGDPSDRSSTLYLYLTRYHHQL*LRCLPA
Trigger: CGCAGGCAGGCATCGGAGCAAGAGCTGATGGTGGTA...TCTTGTCAAGTAGAGATACAAAGTACTAGAGCGATCACTAGGATCTCCCCAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp GCCTGCCTCTGGTCTTGGGGACTGACCAGGGTTCAGGGGTTCTTACTCATTTCATTGTCATCCTCTGTGTaGTTCACACTCACAGAGGTT +
Preference number: 5 (lower is better)
Translates to: ACLWSWGLTRVQGFLLISLSSSV*FTLTEV
Trigger: AACCTCTGTGAGTGTGAACAACACAGAGGATGACAA...TGAAATGAGTAAGAACCCCTGAACCCTGGTCAGTCCCCAAGACCAGAGGCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp GCAACCAATGGCATGATAAGACCCTCCTCACTGGACTCATCTTACTGGGAGCTAAGCAGGATGATGGCGTaGATGTTGCAGACACGTCTC +
Preference number: 5 (lower is better)
Translates to: ATNGMIRPSSLDSSYWELSRMMA*MLQTRL
Trigger: GAGACGTGTCTGCAACATCAACGCCATCATCCTGCT...TAGCTCCCAGTAAGATGAGTCCAGTGAGGAGGGTCTTATCATGCCATTGGTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp AAAGCTTCACTGCCTGAGGGAGTGCCTCAGTCTCTCAGGAAATGGAAGGTACGTCCCCAGAGAAAGATGTaGATGGCTAGCAGGATGATG +
Preference number: 5 (lower is better)
Translates to: KASLPEGVPQSLRKWKVRPQRKM*MASRMM
Trigger: CATCATCCTGCTAGCCATCAACATCTTTCTCTGGGG...ACGTACCTTCCATTTCCTGAGAGACTGAGGCACTCCCTCAGGCAGTGAAGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp AGAGTTAGTGAGGTCAGAAAGTCAGTGAAGGGAAAATTTGGAGGCAGCTGTAAGGGCCCCACACACTCTTaGACAGATGTCAGGGTCCAC +
Preference number: 5 (lower is better)
Translates to: RVSEVRKSVKGKFGGSCKGPTHS*TDVRVH
Trigger: GTGGACCCTGACATCTGTCAAAGAGTGTGTGGGGCC...CTTACAGCTGCCTCCAAATTTTCCCTTCACTGACTTTCTGACCTCACTAACTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp GCACTTGTCTCTATACCTGTGCTCTTCACTGTAATGGGATTGGCAGGCACAACGAGGGTGCTACTGCTGTaGAAGATAGAGGTGAGTGAG +
Preference number: 5 (lower is better)
Translates to: ALVSIPVLFTVMGLAGTTRVLLL*KIEVSE
Trigger: CTCACTCACCTCTATCTTCAACAGCAGTAGCACCCT...CGTTGTGCCTGCCAATCCCATTACAGTGAAGAGCACAGGTATAGAGACAAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp GGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTAGCAGGATGATGGCGTaGATGTTGCAGACACGTCTC +
Preference number: 5 (lower is better)
Translates to: GSIVERELELETQCESYCSRMMA*MLQTRL
Trigger: GAGACGTGTCTGCAACATCAACGCCATCATCCTGCT...ACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS TCA 90 bp GGATGGATGACCAAATTCCCACAGCAAGAACAAAGACAAAATAGATaGCCACCACCACGATGTCATAGGTATGTAGCCCCAGGCTTGGGT +
Preference number: 5 (lower is better)
Translates to: GWMTKFPQQEQRQNR*PPPRCHRYVAPGLG
Trigger: ACCCAAGCCTGGGGCTACATACCTATGACATCGTGGTGGTGGTCATCTATTTTGTCTTTGTTCTTGCTGTGGGAATTTGGTCATCCATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp GGCAGTATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTAAGCCACTGCCCACATaGCTGGACATTAGAGATGCT +
Preference number: 5 (lower is better)
Translates to: GSIVERELELETQCESYCKPLPT*LDIRDA
Trigger: AGCATCTCTAATGTCCAGCAATGTGGGCAGTGGCTT...ACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTATACTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp ATAGTAGAAAGAGAGTTGGAATTGGAGACCCAGTGTGAGTCCTACTGTGTGACCAGGGTGCTACTGCTGTaGAAGATAGAGGTGAGTGAG +
Preference number: 5 (lower is better)
Translates to: IVERELELETQCESYCVTRVLLL*KIEVSE
Trigger: CTCACTCACCTCTATCTTCAACAGCAGTAGCACCCT...GGTCACACAGTAGGACTCACACTGGGTCTCCAATTCCAACTCTCTTTCTACTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp TGGTGGGGGCTGATTGGGACCTTGACACAGTGTGAGGAATTTGGAAATCTTCCTTTGTCATCCTCTGTGTaGTTCACACTCACAGAGGTT +
Preference number: 5 (lower is better)
Translates to: WWGLIGTLTQCEEFGNLPLSSSV*FTLTEV
Trigger: AACCTCTGTGAGTGTGAACAACACAGAGGATGACAA...AGGAAGATTTCCAAATTCCTCACACTGTGTCAAGGTCCCAATCAGCCCCCACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp AGCCAATTGTCCTATCAGAATTCCATGCTTCCTCAACTTCCAAGGGAACATACAGCCCCTGAGTGGTGTTaGCTTCTTCCTCATCTCCTG +
Preference number: 5 (lower is better)
Translates to: SQLSYQNSMLPQLPREHTAPEWC*LLPHLL
Trigger: CAGGAGATGAGGAAGAAGCAAACACCACTCAGGGGC...TGTATGTTCCCTTGGAAGTTGAGGAAGCATGGAATTCTGATAGGACAATTGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp AGAGTTAGTGAGGTCAGAAAGTCAGTGAAGGGAAAATTTGGAGGCAGCTGTAAGAGGGTGCTACTGCTGTaGAAGATAGAGGTGAGTGAG +
Preference number: 5 (lower is better)
Translates to: RVSEVRKSVKGKFGGSCKRVLLL*KIEVSE
Trigger: CTCACTCACCTCTATCTTCAACAGCAGTAGCACCCT...CTTACAGCTGCCTCCAAATTTTCCCTTCACTGACTTTCTGACCTCACTAACTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102721.8
CDS-3UTR CAA 90 bp TATAATCCAACAAGCATCTATTGCCTTCTTTTGTTGATAGGTACAAAGTCAGGTGCCAGTCCTGGAGAGTaGTCATCCTCTGTGTTGTTC +
Preference number: 5 (lower is better)
Translates to: YNPTSIYCLLLLIGTKSGASPGE*SSSVLF
Trigger: GAACAACACAGAGGATGACAACTCTCCAGGACTGGC...ACCTGACTTTGTACCTATCAACAAAAGAAGGCAATAGATGCTTGTTGGATTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 90 bp AGGACCTGTGTAGGGCTCCTGGTTGTTCAGGCCCCTGAGTGGTGTTaGCTTCTTCCTCATCTCCTGCAGGGCCCTCTACCACTGGCCTCC +
Preference number: 6 (lower is better)
Translates to: RTCVGLLVVQAPEWC*LLPHLLQGPLPLAS
Trigger: GGAGGCCAGTGGTAGAGGGCCCTGCAGGAGATGAGGAAGAAGCAAACACCACTCAGGGGCCTGAACAACCAGGAGCCCTACACAGGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS TCA 72 bp CAGGACCTGTGTAGGGCTCCTGGTTGTTCAGGCCCCTaGGTGGTGTTTGCTTCTTCCTCATCTCCTGCAGGG +
Preference number: 6 (lower is better)
Translates to: QDLCRAPGCSGP*VVFASSSSPAG
Trigger: CCCTGCAGGAGATGAGGAAGAAGCAAACACCACTCAGGGGCCTGAACAACCAGGAGCCCTACACAGGTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS GCA 72 bp TGTTGCAGACACGTCTCCAGAGCGGCTCCTCCTCGATaGTGGTCAGCTTCTGCTCCAACACAGCCTTCTCAG +
Preference number: 6 (lower is better)
Translates to: CCRHVSRAAPPR*WSASAPTQPSQ
Trigger: CTGAGAAGGCTGTGTTGGAGCAGAAGCTGACCAGCATCGAGGAGGAGCCGCTCTGGAGACGTGTCTGCAACA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CCA 72 bp GCATGTGGAAGGCATCAGGCCGTGGGAGGTGACAGGTaGTATTGGGAACTGTGGTATTGGGGATGGCCTGTC +
Preference number: 6 (lower is better)
Translates to: ACGRHQAVGGDR*YWELWYWGWPV
Trigger: GACAGGCCATCCCCAATACCACAGTTCCCAATACCACCTGTCACCTCCCACGGCCTGATGCCTTCCACATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 72 bp ACCTGTGTAGGGCTCCTGGTTGTTCAGGCCCCTGAGTaGTGTTTGCTTCTTCCTCATCTCCTGCAGGGCCCT +
Preference number: 6 (lower is better)
Translates to: TCVGLLVVQAPE*CLLLPHLLQGP
Trigger: AGGGCCCTGCAGGAGATGAGGAAGAAGCAAACACCACTCAGGGGCCTGAACAACCAGGAGCCCTACACAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 72 bp GTAGGGCTCCTGGTTGTTCAGGCCCCTGAGTGGTGTTaGCTTCTTCCTCATCTCCTGCAGGGCCCTCTACCA +
Preference number: 6 (lower is better)
Translates to: VGLLVVQAPEWC*LLPHLLQGPLP
Trigger: TGGTAGAGGGCCCTGCAGGAGATGAGGAAGAAGCAAACACCACTCAGGGGCCTGAACAACCAGGAGCCCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 90 bp CCCCAGAGAAAGATGTTGATGGCTAGCAGGATGATGGCGTTGATGTaGCAGACACGTCTCCAGAGCGGCTCCTCCTCGATGCTGGTCAGC +
Preference number: 6 (lower is better)
Translates to: PQRKMLMASRMMALM*QTRLQSGSSSMLVS
Trigger: GCTGACCAGCATCGAGGAGGAGCCGCTCTGGAGACGTGTCTGCAACATCAACGCCATCATCCTGCTAGCCATCAACATCTTTCTCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CCA 72 bp GTGGGAGGTGACAGGTGGTATTGGGAACTGTGGTATTaGGGATGGCCTGTCTATAGAGCTGCTGCAGGCCTG +
Preference number: 6 (lower is better)
Translates to: VGGDRWYWELWY*GWPVYRAAAGL
Trigger: CAGGCCTGCAGCAGCTCTATAGACAGGCCATCCCCAATACCACAGTTCCCAATACCACCTGTCACCTCCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 72 bp CAGGCCGTGGGAGGTGACAGGTGGTATTGGGAACTGTaGTATTGGGGATGGCCTGTCTATAGAGCTGCTGCA +
Preference number: 6 (lower is better)
Translates to: QAVGGDRWYWEL*YWGWPVYRAAA
Trigger: TGCAGCAGCTCTATAGACAGGCCATCCCCAATACCACAGTTCCCAATACCACCTGTCACCTCCCACGGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 72 bp GGATCTTTAGGTAGCCCCCTAGCACGGAGCCTCCCTTaGCATGTGAAAGATTCTTGGCCGCGAGAGACCTCT +
Preference number: 6 (lower is better)
Translates to: GSLGSPLARSLP*HVKDSWPRETS
Trigger: AGAGGTCTCTCGCGGCCAAGAATCTTTCACATGCCAAGGGAGGCTCCGTGCTAGGGGGCTACCTAAAGATCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CAA 72 bp GGACAAAGATCCAGCCCAGGGCTAGAAGCAGGAAGGTaGCGTTCCACTCAAAGCCACCAACAGCAAGGCCTC +
Preference number: 6 (lower is better)
Translates to: GQRSSPGLEAGR*RSTQSHQQQGL
Trigger: GAGGCCTTGCTGTTGGTGGCTTTGAGTGGAACGCAACCTTCCTGCTTCTAGCCCTGGGCTGGATCTTTGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 72 bp GCACAGTTCCTTGTCCACCAGGTCAGGCGAGCAAGCTaGTCATCGGGGATGGGCTCCGTGAAGAAGCTGATT +
Preference number: 6 (lower is better)
Translates to: AQFLVHQVRRAS*SSGMGSVKKLI
Trigger: AATCAGCTTCTTCACGGAGCCCATCCCCGATGACAAGCTTGCTCGCCTGACCTGGTGGACAAGGAACTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS TCA 72 bp TCTCGAAGCATGTGGAAGGCATCAGGCCGTGGGAGGTaGCAGGTGGTATTGGGAACTGTGGTATTGGGGATG +
Preference number: 6 (lower is better)
Translates to: SRSMWKASGRGR*QVVLGTVVLGM
Trigger: CATCCCCAATACCACAGTTCCCAATACCACCTGTCACCTCCCACGGCCTGATGCCTTCCACATGCTTCGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 72 bp GGAAGGCATCAGGCCGTGGGAGGTGACAGGTGGTATTaGGAACTGTGGTATTGGGGATGGCCTGTCTATAGA +
Preference number: 6 (lower is better)
Translates to: GRHQAVGGDRWY*ELWYWGWPVYR
Trigger: TCTATAGACAGGCCATCCCCAATACCACAGTTCCCAATACCACCTGTCACCTCCCACGGCCTGATGCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 72 bp CCAGGTGGCCAAGACTGTGAGGCCAAAAATGAGACCTaGCCAGGGGATGTCTCCATTCACAGGATCTCGAAG +
Preference number: 6 (lower is better)
Translates to: PGGQDCEAKNET*PGDVSIHRISK
Trigger: CTTCGAGATCCTGTGAATGGAGACATCCCCTGGCCAGGTCTCATTTTTGGCCTCACAGTCTTGGCCACCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 72 bp TTGACAGATGTCAGGGTCCACACAGGCAACTTCATCTaGGTACAGGGCCCTGCTGATCATGCCAGGCATGAC +
Preference number: 6 (lower is better)
Translates to: LTDVRVHTGNFI*VQGPADHARHD
Trigger: GTCATGCCTGGCATGATCAGCAGGGCCCTGTACCCAGATGAAGTTGCCTGTGTGGACCCTGACATCTGTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 72 bp CCCTCTACCACTGGCCTCCCTGCCAGTCCTGGAGAGTaGTCATCCTCTGTGTTGTTCACACTCACAGAGGTT +
Preference number: 6 (lower is better)
Translates to: PSTTGLPASPGE*SSSVLFTLTEV
Trigger: AACCTCTGTGAGTGTGAACAACACAGAGGATGACAACTCTCCAGGACTGGCAGGGAGGCCAGTGGTAGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 90 bp GCAGCCCCTGTTCCAGCCAGGCCGATAAATAAGCCACTGCCCACATaGCTGGACATTAGAGATGCTCCAATTGGCCACCAGGTCATGGAT +
Preference number: 6 (lower is better)
Translates to: AAPVPARPINKPLPT*LDIRDAPIGHQVMD
Trigger: ATCCATGACCTGGTGGCCAATTGGAGCATCTCTAATGTCCAGCAATGTGGGCAGTGGCTTATTTATCGGCCTGGCTGGAACAGGGGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 90 bp TCAGATACGGCACAGTTCCTTGTCCACCAGGTCAGGCGAGCAAGCTaGTCATCGGGGATGGGCTCCGTGAAGAAGCTGATTACGACAATG +
Preference number: 6 (lower is better)
Translates to: SDTAQFLVHQVRRAS*SSGMGSVKKLITTM
Trigger: CATTGTCGTAATCAGCTTCTTCACGGAGCCCATCCCCGATGACAAGCTTGCTCGCCTGACCTGGTGGACAAGGAACTGTGCCGTATCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 72 bp TCCCAGCCAGGAAATAGCCACCAACGGTCCCTCGACTaGCACGGATGGATGACCAAATTCCCACAGCAAGAA +
Preference number: 6 (lower is better)
Translates to: SQPGNSHQRSLD*HGWMTKFPQQE
Trigger: TTCTTGCTGTGGGAATTTGGTCATCCATCCGTGCAAGTCGAGGGACCGTTGGTGGCTATTTCCTGGCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 72 bp AGGTTTTCTTCTGCAGGTCAGATACGGCACAGTTCCTaGTCCACCAGGTCAGGCGAGCAAGCTTGTCATCGG +
Preference number: 6 (lower is better)
Translates to: RFSSAGQIRHSS*STRSGEQACHR
Trigger: CCGATGACAAGCTTGCTCGCCTGACCTGGTGGACAAGGAACTGTGCCGTATCTGACCTGCAGAAGAAAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 72 bp AAGATGTTGATGGCTAGCAGGATGATGGCGTTGATGTaGCAGACACGTCTCCAGAGCGGCTCCTCCTCGATG +
Preference number: 6 (lower is better)
Translates to: KMLMASRMMALM*QTRLQSGSSSM
Trigger: CATCGAGGAGGAGCCGCTCTGGAGACGTGTCTGCAACATCAACGCCATCATCCTGCTAGCCATCAACATCTT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 90 bp ACCACTGGCCTCCCTGCCAGTCCTGGAGAGTTGTCATCCTCTGTGTaGTTCACACTCACAGAGGTTTTCTTCTGCAGGTCAGATACGGCA +
Preference number: 6 (lower is better)
Translates to: TTGLPASPGELSSSV*FTLTEVFFCRSDTA
Trigger: TGCCGTATCTGACCTGCAGAAGAAAACCTCTGTGAGTGTGAACAACACAGAGGATGACAACTCTCCAGGACTGGCAGGGAGGCCAGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS TCA 72 bp GTAGCCCCAGGCTTGGGTTCGTTGTTGTCTCAGTTCTaGCTCCATTCCTTGACACTCCTGGTTCCATTGCCA +
Preference number: 6 (lower is better)
Translates to: VAPGLGSLLSQF*LHSLTLLVPLP
Trigger: TGGCAATGGAACCAGGAGTGTCAAGGAATGGAGTCAGAACTGAGACAACAACGAACCCAAGCCTGGGGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS TCA 72 bp CTGCAATGGTGTAGACAGCTGTCACCACCAGCAAGATaGCTGTGGAGAGATAGAGATTCCAGCCCAAGGCCA +
Preference number: 6 (lower is better)
Translates to: LQWCRQLSPPAR*LWRDRDSSPRP
Trigger: TGGCCTTGGGCTGGAATCTCTATCTCTCCACAGTCATCTTGCTGGTGGTGACAGCTGTCTACACCATTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CCA 72 bp GATCCTCTGTCCCCCAAATCGTTTCTTCAGGTACTGTaGCATGGTGACCACACCAGCTGCTATGTACACAGG +
Preference number: 6 (lower is better)
Translates to: DPLSPKSFLQVL*HGDHTSCYVHR
Trigger: CCTGTGTACATAGCAGCTGGTGTGGTCACCATGCCACAGTACCTGAAGAAACGATTTGGGGGACAGAGGATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CAA 72 bp CACTGCCCACATTGCTGGACATTAGAGATGCTCCAATaGGCCACCAGGTCATGGATCTCCCAGCCAGGAAAT +
Preference number: 6 (lower is better)
Translates to: HCPHCWTLEMLQ*ATRSWISQPGN
Trigger: ATTTCCTGGCTGGGAGATCCATGACCTGGTGGCCAATTGGAGCATCTCTAATGTCCAGCAATGTGGGCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 72 bp GTTCCAGCCAGGCCGATAAATAAGCCACTGCCCACATaGCTGGACATTAGAGATGCTCCAATTGGCCACCAG +
Preference number: 6 (lower is better)
Translates to: VPARPINKPLPT*LDIRDAPIGHQ
Trigger: CTGGTGGCCAATTGGAGCATCTCTAATGTCCAGCAATGTGGGCAGTGGCTTATTTATCGGCCTGGCTGGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CAA 90 bp TCATGGATCTCCCAGCCAGGAAATAGCCACCAACGGTCCCTCGACTaGCACGGATGGATGACCAAATTCCCACAGCAAGAACAAAGACAA +
Preference number: 6 (lower is better)
Translates to: SWISQPGNSHQRSLD*HGWMTKFPQQEQRQ
Trigger: TTGTCTTTGTTCTTGCTGTGGGAATTTGGTCATCCATCCGTGCAAGTCGAGGGACCGTTGGTGGCTATTTCCTGGCTGGGAGATCCATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS TCA 72 bp GTCCCCCAAATCGTTTCTTCAGGTACTGTGGCATGGTaGCCACACCAGCTGCTATGTACACAGGGACAAAGA +
Preference number: 6 (lower is better)
Translates to: VPQIVSSGTVAW*PHQLLCTQGQR
Trigger: TCTTTGTCCCTGTGTACATAGCAGCTGGTGTGGTCACCATGCCACAGTACCTGAAGAAACGATTTGGGGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
ENSMUST00000128340.3
CDS CAA 72 bp CTCCCTGCCAGTCCTGGAGAGTTGTCATCCTCTGTGTaGTTCACACTCACAGAGGTTTTCTTCTGCAGGTCA +
Preference number: 6 (lower is better)
Translates to: LPASPGELSSSV*FTLTEVFFCRS
Trigger: TGACCTGCAGAAGAAAACCTCTGTGAGTGTGAACAACACAGAGGATGACAACTCTCCAGGACTGGCAGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS GCA 72 bp TCCTCTGTGTTGTTCACACTCACAGAGGTTTTCTTCTaGAGGTCAGATACGGCACAGTTCCTTGTCCACCAG +
Preference number: 6 (lower is better)
Translates to: SSVLFTLTEVFF*RSDTAQFLVHQ
Trigger: CTGGTGGACAAGGAACTGTGCCGTATCTGACCTGCAGAAGAAAACCTCTGTGAGTGTGAACAACACAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS CCA 72 bp GGAAATAGCCACCAACGGTCCCTCGACTTGCACGGATaGATGACCAAATTCCCACAGCAAGAACAAAGACAA +
Preference number: 6 (lower is better)
Translates to: GNSHQRSLDLHG*MTKFPQQEQRQ
Trigger: TTGTCTTTGTTCTTGCTGTGGGAATTTGGTCATCCATCCGTGCAAGTCGAGGGACCGTTGGTGGCTATTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS TCA 72 bp ATAGCCACCAACGGTCCCTCGACTTGCACGGATGGATaGCCAAATTCCCACAGCAAGAACAAAGACAAAATA +
Preference number: 6 (lower is better)
Translates to: IATNGPSTCTDG*PNSHSKNKDKI
Trigger: TATTTTGTCTTTGTTCTTGCTGTGGGAATTTGGTCATCCATCCGTGCAAGTCGAGGGACCGTTGGTGGCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8
CDS TCA 72 bp ACCAAATTCCCACAGCAAGAACAAAGACAAAATAGATaGCCACCACCACGATGTCATAGGTATGTAGCCCCA +
Preference number: 6 (lower is better)
Translates to: TKFPQQEQRQNR*PPPRCHRYVAP
Trigger: TGGGGCTACATACCTATGACATCGTGGTGGTGGTCATCTATTTTGTCTTTGTTCTTGCTGTGGGAATTTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102719.8
ENSMUST00000102720.8
ENSMUST00000102721.8