RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC5A6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006641

Ensembl transcript IDs: ENSMUST00000080431.8, ENSMUST00000114668.7, ENSMUST00000200816.2, ENSMUST00000202520.4, ENSMUST00000202556.4, ENSMUST00000202984.2

Found 262 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCTCCGGCTGCTGTCTaGAGCGAGGGCAGAGTTCAC +
Preference number: 2 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSPPAAV*SEGRVH
Trigger: GTGAACTCTGCCCTCGCTGCAGACAGCAGCCGGAGG...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp GCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCTCCTCCGGCTGCTGTCTaGAGCGAGGGCAGAGTTCAC +
Preference number: 2 (lower is better)
Translates to: ALKYCLKRARIDVENCPPPPAAV*SEGRVH
Trigger: GTGAACTCTGCCCTCGCTGCAGACAGCAGCCGGAGG...AGGGGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp TCCTGGGGCGGTTGTAAGAAATGCTGTTCCTACTCACTCCAAAGAACCCTGGTCTGTCTCGCCCTTGCATaGCCCCGCTTCCATGGAGGT +
Preference number: 2 (lower is better)
Translates to: SWGGCKKCCSYSLQRTLVCLALA*PRFHGG
Trigger: ACCTCCATGGAAGCGGGGGCATGCAAGGGCGAGACA...GACCAGGGTTCTTTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCCCCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR TCA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCAAGCTTGGCAAGGGATaGGGAAAAACTGTCTCGCCC +
Preference number: 2 (lower is better)
Translates to: RALKYCLKRARIDVENCPKLGKG*GKTVSP
Trigger: GGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTT...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR TCA 90 bp GCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCTAAGCTTGGCAAGGGATaGGGAAAAACTGTCTCGCCC +
Preference number: 2 (lower is better)
Translates to: ALKYCLKRARIDVENCPPKLGKG*GKTVSP
Trigger: GGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTT...AGGGGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGTGTCTCGCCCTTGCATaGCCCCGCTTCCATGGAGGT +
Preference number: 2 (lower is better)
Translates to: RPKDTKASLSRVEVGKNECLALA*PRFHGG
Trigger: ACCTCCATGGAAGCGGGGGCATGCAAGGGCGAGACA...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR TCA 90 bp GCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCTAACACACGGAGTGAGTaGGTCATCTCTGCACTACAA +
Preference number: 2 (lower is better)
Translates to: ALKYCLKRARIDVENCPPNTRSE*VISALQ
Trigger: TTGTAGTGCAGAGATGACTCACTCACTCCGTGTGTT...AGGGGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR TCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCAACACACGGAGTGAGTaGGTCATCTCTGCACTACAA +
Preference number: 2 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSNTRSE*VISALQ
Trigger: TTGTAGTGCAGAGATGACTCACTCACTCCGTGTGTT...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCGGCGGTTGTAAGAAATaGTGTTCCTACTCACTCCAA +
Preference number: 2 (lower is better)
Translates to: RALKYCLKRARIDVENCPGGCKK*CSYSLQ
Trigger: TTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCC...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCGGCGGTTGTAAGAAATaGTGTTCCTACTCACTCCAA +
Preference number: 2 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSGGCKK*CSYSLQ
Trigger: TTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCC...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR TCA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGAACACACGGAGTGAGTaGGTCATCTCTGCACTACAA +
Preference number: 2 (lower is better)
Translates to: GITRGLKRASQSCQIRSWNTRSE*VISALQ
Trigger: TTGTAGTGCAGAGATGACTCACTCACTCCGTGTGTT...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTTGTAAGAAATaGTGTTCCTACTCACTCCAA +
Preference number: 2 (lower is better)
Translates to: GITRGLKRASQSCQIRSWGGCKK*CSYSLQ
Trigger: TTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCC...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATAGAGCTAGTCAGTCTTaGCAAATCAGGTCCTGGGGC +
Preference number: 2 (lower is better)
Translates to: KASLSRVEVGKNERGLEYRASQS*QIRSWG
Trigger: GCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCT...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR TCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGAAGCTTGGCAAGGGATaGGGAAAAACTGTCTCGCCC +
Preference number: 2 (lower is better)
Translates to: VGKNERGLEYYREPERPQKLGKG*GKTVSP
Trigger: GGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTT...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCGGTCACTTAATCAAATaGCACCCTTTTCTTAGTGTA +
Preference number: 2 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSGHLIK*HPFLSV
Trigger: TACACTAAGAAAAGGGTGGCATTTGATTAAGTGACC...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGAGAGCTAGTCAGTCTTaGCAAATCAGGTCCTGGGGC +
Preference number: 2 (lower is better)
Translates to: VGKNERGLEYYREPERPQRASQS*QIRSWG
Trigger: GCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCT...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR TCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGGTAGAACACACGGAGTaGGTGAGTCATCTCTGCACT +
Preference number: 2 (lower is better)
Translates to: VGKNERGLEYYREPERPQVEHTE*VSHLCT
Trigger: AGTGCAGAGATGACTCACTCACTCCGTGTGTTCTAC...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACTGTCTCGCCCTTGCATaGCCCCGCTTCCATGGAGGT +
Preference number: 2 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDCLALA*PRFHGG
Trigger: ACCTCCATGGAAGCGGGGGCATGCAAGGGCGAGACA...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR TCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGAACACACGGAGTGAGTaGGTCATCTCTGCACTACAA +
Preference number: 2 (lower is better)
Translates to: VGKNERGLEYYREPERPQNTRSE*VISALQ
Trigger: TTGTAGTGCAGAGATGACTCACTCACTCCGTGTGTT...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGTGGGATTCTATACCCTaGAAACCAATCCTAAGAGAA +
Preference number: 2 (lower is better)
Translates to: RPKDTKASLSRVEVGKNEWDSIP*KPILRE
Trigger: TTCTCTTAGGATTGGTTTGCAGGGTATAGAATCCCA...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGGGTCACTTAATCAAATaGCACCCTTTTCTTAGTGTA +
Preference number: 2 (lower is better)
Translates to: RPKDTKASLSRVEVGKNEGHLIK*HPFLSV
Trigger: TACACTAAGAAAAGGGTGGCATTTGATTAAGTGACC...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACAGGGCCCTGAAGTACTaGCTGAAGAGGGCAAGGATC +
Preference number: 2 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDRALKY*LKRARI
Trigger: GATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATTGGGATTCTATACCCTaGAAACCAATCCTAAGAGAA +
Preference number: 2 (lower is better)
Translates to: KASLSRVEVGKNERGLEYWDSIP*KPILRE
Trigger: TTCTCTTAGGATTGGTTTGCAGGGTATAGAATCCCA...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR TCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGAATGATAAGCCAGGTTaGCATGATAGTGAAGGAATC +
Preference number: 2 (lower is better)
Translates to: VGKNERGLEYYREPERPQNDKPG*HDSEGI
Trigger: GATTCCTTCACTATCATGTCAACCTGGCTTATCATT...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp GTTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTGGGATTCTATACCCTaGAAACCAATCCTAAGAGAA +
Preference number: 2 (lower is better)
Translates to: VPTHSKEPWSLNQMPPFSWDSIP*KPILRE
Trigger: TTCTCTTAGGATTGGTTTGCAGGGTATAGAATCCCA...AGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp TTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTTGGGATTCTATACCCTaGAAACCAATCCTAAGAGAA +
Preference number: 2 (lower is better)
Translates to: FLLTPKNPGHLIKCHPFLWDSIP*KPILRE
Trigger: TTCTCTTAGGATTGGTTTGCAGGGTATAGAATCCCA...AAGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR GCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGGGTCACTTAATCAAATaGCACCCTTTTCTTAGTGTA +
Preference number: 2 (lower is better)
Translates to: VGKNERGLEYYREPERPQGHLIK*HPFLSV
Trigger: TACACTAAGAAAAGGGTGGCATTTGATTAAGTGACC...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR TCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACAATGATAAGCCAGGTTaGCATGATAGTGAAGGAATC +
Preference number: 2 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDNDKPG*HDSEGI
Trigger: GATTCCTTCACTATCATGTCAACCTGGCTTATCATT...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR GCA 72 bp AGTGAGTCATCTCTGCACTACAAAATAGCCTCCGGCTaGTGTCTGCAGCGAGGGCAGAGTTCACGCCCCAGG +
Preference number: 3 (lower is better)
Translates to: SESSLHYKIASG*CLQRGQSSRPR
Trigger: CCTGGGGCGTGAACTCTGCCCTCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAGTGCAGAGATGACTCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR CAA 90 bp TCCTGGGGCGGTTGTAAGAAATGCTGTTCCTACTCACTCCAAAGAACCCTGGTCAAAACTGTCTCGCCCTaGCATGCCCCCGCTTCCATG +
Preference number: 3 (lower is better)
Translates to: SWGGCKKCCSYSLQRTLVKTVSP*HAPASM
Trigger: CATGGAAGCGGGGGCATGCAAGGGCGAGACAGTTTT...GACCAGGGTTCTTTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCCCCAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR CAA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCAGAATGAGAGAGGACTaGAGTATTACAGAGAACCCG +
Preference number: 3 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSRMRED*SITENP
Trigger: CGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCT...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR GCA 72 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTaGCAAATCAGGTCCTGGGGCGGTTGTAAGAAATGC +
Preference number: 3 (lower is better)
Translates to: GITRGLKRASQS*QIRSWGGCKKC
Trigger: GCATTTCTTACAACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR CAA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGAAAACTGTCTCGCCCTaGCATGCCCCCGCTTCCATG +
Preference number: 3 (lower is better)
Translates to: VGKNERGLEYYREPERPQKTVSP*HAPASM
Trigger: CATGGAAGCGGGGGCATGCAAGGGCGAGACAGTTTT...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR CAA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCAATCCTAAGAGAAGCTaGGCAAGGGATGAGGAAAAA +
Preference number: 3 (lower is better)
Translates to: RALKYCLKRARIDVENCPNPKRS*ARDEEK
Trigger: TTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATT...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR CCA 72 bp CTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTaGGGCGGTTGTAAGAAATGCTGTTCCTACTCACTC +
Preference number: 3 (lower is better)
Translates to: LKRASQSCQIRS*GGCKKCCSYSL
Trigger: GAGTGAGTAGGAACAGCATTTCTTACAACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR CCA 72 bp GATTCTATACCCTGCAAACCAATCCTAAGAGAAGCTTaGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCA +
Preference number: 3 (lower is better)
Translates to: DSIPCKPILREA*QGMRKNCLALA
Trigger: TGCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGTTTGCAGGGTATAGAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR CAA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACAAAACTGTCTCGCCCTaGCATGCCCCCGCTTCCATG +
Preference number: 3 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDKTVSP*HAPASM
Trigger: CATGGAAGCGGGGGCATGCAAGGGCGAGACAGTTTT...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
3UTR-3UTR CAA 90 bp GTTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTAATCCTAAGAGAAGCTaGGCAAGGGATGAGGAAAAA +
Preference number: 3 (lower is better)
Translates to: VPTHSKEPWSLNQMPPFSNPKRS*ARDEEK
Trigger: TTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATT...AGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCAGGATGGCCACGGCTaGCTGGAAGGTGGCCAGCAA +
Preference number: 4 (lower is better)
Translates to: RALKYCLKRARIDVENCPQDGHG*LEGGQQ
Trigger: TTGCTGGCCACCTTCCAGTCAGCCGTGGCCATCCTG...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp CTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAGGGCAGAGTTCACGCCCCAGGGCCTCGAGAAAGCATaGTGGCCCGAGTTTCAGTCA +
Preference number: 4 (lower is better)
Translates to: LQNSLRLLSAARAEFTPQGLEKA*WPEFQS
Trigger: TGACTGAAACTCGGGCCATCATGCTTTCTCGAGGCC...CTGGGGCGTGAACTCTGCCCTCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp CTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAGGGCAGAGTTCACGCCCCAGGAGCCTGAGGTTGTATaGAAGGGAGCTGCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: LQNSLRLLSAARAEFTPQEPEVV*KGAAVL
Trigger: GAGCACTGCAGCTCCCTTCCATACAACCTCAGGCTC...CTGGGGCGTGAACTCTGCCCTCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCTCTGGTGCTCCCAGGATaGCCACGGCTGACTGGAAGG +
Preference number: 4 (lower is better)
Translates to: ALKYCLKRARIDVENCPPLVLPG*PRLTGR
Trigger: CCTTCCAGTCAGCCGTGGCCATCCTGGGAGCACCAG...AGGGGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp CTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAGGGCAGAGTTCACGCCCCAGGAAGAGTCCCAGCAGTaGCCCTCCAACCATGCCAAA +
Preference number: 4 (lower is better)
Translates to: LQNSLRLLSAARAEFTPQEESQQ*PSNHAK
Trigger: TTTGGCATGGTTGGAGGGCCACTGCTGGGACTCTTC...CTGGGGCGTGAACTCTGCCCTCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp CTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAGGGCAGAGTTCACGCCCCAGATCCAGTCACTGCATTaGGGGCCAAGGATGGTGCAT +
Preference number: 4 (lower is better)
Translates to: LQNSLRLLSAARAEFTPQIQSLH*GPRMVH
Trigger: ATGCACCATCCTTGGCCCTCAATGCAGTGACTGGAT...CTGGGGCGTGAACTCTGCCCTCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCTTCTCCGAGTGGGAACTaGGGTAGCGCTGCACCTGAG +
Preference number: 4 (lower is better)
Translates to: ALKYCLKRARIDVENCPPSPSGN*GSAAPE
Trigger: CTCAGGTGCAGCGCTACCTCAGTTCCCACTCGGAGA...AGGGGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCATGGCCACGGCTGACTaGAAGGTGGCCAGCAAGGAC +
Preference number: 4 (lower is better)
Translates to: RALKYCLKRARIDVENCPMATAD*KVASKD
Trigger: GTCCTTGCTGGCCACCTTCCAGTCAGCCGTGGCCAT...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCGGCCAGCAAGGACAGTaGCACAGGAAGACAGCCCAT +
Preference number: 4 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSGQQGQ*HRKTAH
Trigger: ATGGGCTGTCTTCCTGTGGCACTGTCCTTGCTGGCC...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GTGAGTGAGTCATCTCTGCACTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGATGGTCAGGGGCTGCTTaGTTCAGCTCGGGGCTCATG +
Preference number: 4 (lower is better)
Translates to: VSESSLHYKIASGCCLQRWSGAA*FSSGLM
Trigger: CATGAGCCCCGAGCTGAAGCAAGCAGCCCCTGACCA...TCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAGTGCAGAGATGACTCACTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCTCACCAACGGTATGGTaGCCCCAGCCACGACAAGCA +
Preference number: 4 (lower is better)
Translates to: RALKYCLKRARIDVENCPSPTVW*PQPRQA
Trigger: TGCTTGTCGTGGCTGGGGCCACCATACCGTTGGTGA...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCTCGGAAGATCTCAGCTaGTGCTCCCAGGATGGCCAC +
Preference number: 4 (lower is better)
Translates to: RALKYCLKRARIDVENCPSEDLS*CSQDGH
Trigger: GTGGCCATCCTGGGAGCACCAGCTGAGATCTTCCGA...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTCGGCGACAGTTACATTaGCAGGCAGGAAGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGRRQLH*QAGRSW
Trigger: CCAGCTCCTTCCTGCCTGCCAATGTAACTGTCGCCG...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGTCTCCGAGTGGGAACTaGGGTAGCGCTGCACCTGAG +
Preference number: 4 (lower is better)
Translates to: GITRGLKRASQSCQIRSWSPSGN*GSAAPE
Trigger: CTCAGGTGCAGCGCTACCTCAGTTCCCACTCGGAGA...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTGGCCTCGAGAAAGCATaGTGGCCCGAGTTTCAGTCA +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGGLEKA*WPEFQS
Trigger: TGACTGAAACTCGGGCCATCATGCTTTCTCGAGGCC...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTTCAGGCCCACTACAATaGCTGTGGTGGAGTTGTGCG +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGSGPLQ*LWWSCA
Trigger: CGCACAACTCCACCACAGTCATTGTAGTGGGCCTGA...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTCTGGCAAGGGAACACTaGATAGCAGGAGAGCACAGC +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGLAREH*IAGEHS
Trigger: GCTGTGCTCTCCTGCTATGCAGTGTTCCCTTGCCAG...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCATGCAGAGGGCCACTTaGTGGCAAGGGAACACTGCA +
Preference number: 4 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSMQRAT*WQGNTA
Trigger: TGCAGTGTTCCCTTGCCAGCAAGTGGCCCTCTGCAT...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGTGGTCAGGGGCTGCTTaGTTCAGCTCGGGGCTCATG +
Preference number: 4 (lower is better)
Translates to: GITRGLKRASQSCQIRSWWSGAA*FSSGLM
Trigger: CATGAGCCCCGAGCTGAAGCAAGCAGCCCCTGACCA...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCTAGTTCACCAACGGTATaGTGGCCCCAGCCACGACAA +
Preference number: 4 (lower is better)
Translates to: ALKYCLKRARIDVENCPPSSPTV*WPQPRQ
Trigger: TTGTCGTGGCTGGGGCCACCATACCGTTGGTGAACT...AGGGGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGATGGCCACGGCTGACTaGAAGGTGGCCAGCAAGGAC +
Preference number: 4 (lower is better)
Translates to: GITRGLKRASQSCQIRSWMATAD*KVASKD
Trigger: GTCCTTGCTGGCCACCTTCCAGTCAGCCGTGGCCAT...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGCTGGTGCTCCCAGGATaGCCACGGCTGACTGGAAGG +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNELVLPG*PRLTGR
Trigger: CCTTCCAGTCAGCCGTGGCCATCCTGGGAGCACCAG...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGAGCCCAGGCAGCCCTaGCATGTCTTTCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: GITRGLKRASQSCQIRSWEPRQP*HVFQEV
Trigger: GACCTCCTGAAAGACATGCCAGGGCTGCCTGGGCTC...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTTGTGGGAACCAGGGCTaGATCAGGTCTTCCATCGTG +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGCGNQG*IRSSIV
Trigger: CACGATGGAAGACCTGATCCAGCCCTGGTTCCCACA...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp CTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAGGGCAGAGTTCACGCCCCAGTCTCTGGAAACAGGTTaGGGATCACAGGGATATCCT +
Preference number: 4 (lower is better)
Translates to: LQNSLRLLSAARAEFTPQSLETG*GSQGYP
Trigger: AGGATATCCCTGTGATCCCCAACCTGTTTCCAGAGA...CTGGGGCGTGAACTCTGCCCTCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTCATGATAGAGCCCAATaGCAAGGGAGAGGACCAGCA +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGHDRAQ*QGRGPA
Trigger: TGCTGGTCCTCTCCCTTGTCATTGGGCTCTATCATG...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp TCCTGGGGCGGTTGTAAGAAATGCTGTTCCTACTCACTCCAAAGAACCCTGGTCACAGGGATGAAGATGTaGGCAGGGATCAGGAGCCCC +
Preference number: 4 (lower is better)
Translates to: SWGGCKKCCSYSLQRTLVTGMKM*AGIRSP
Trigger: GGGGCTCCTGATCCCTGCTCACATCTTCATCCCTGT...GACCAGGGTTCTTTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCCCCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTATCCAGTCACTGCATTaGGGGCCAAGGATGGTGCAT +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGIQSLH*GPRMVH
Trigger: ATGCACCATCCTTGGCCCTCAATGCAGTGACTGGAT...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCATCCAGTCACTGCATTaGGGGCCAAGGATGGTGCAT +
Preference number: 4 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSIQSLH*GPRMVH
Trigger: ATGCACCATCCTTGGCCCTCAATGCAGTGACTGGAT...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTGCTGCCCGAGGAACATaGCCAGTGTTTGGAACACAT +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGAARGT*PVFGTH
Trigger: ATGTGTTCCAAACACTGGTCATGTTCCTCGGGCAGC...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCTTGCTGCCTGGAGCACTaGTCCCAGATGAGAGGAAAT +
Preference number: 4 (lower is better)
Translates to: ALKYCLKRARIDVENCPPCCLEH*SQMRGN
Trigger: ATTTCCTCTCATCTGGGATCAGTGCTCCAGGCAGCA...AGGGGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTGCCCATTTTGCGGTCTaGCATCAGCAGTTCACCAAC +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGAHFAV*HQQFTN
Trigger: GTTGGTGAACTGCTGATGGCAGACCGCAAAATGGGC...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCCAGCAAGGACAGTaGCACAGGAAGACAGCCCAT +
Preference number: 4 (lower is better)
Translates to: GITRGLKRASQSCQIRSWGQQGQ*HRKTAH
Trigger: ATGGGCTGTCTTCCTGTGGCACTGTCCTTGCTGGCC...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGGAAGATCTCAGCTGGTaGTCCCAGGATGGCCACGGC +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNEEDLSW*SQDGHG
Trigger: GCCGTGGCCATCCTGGGAGCACCAGCTGAGATCTTC...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCGAAGATCTCAGCTGGTaGTCCCAGGATGGCCACGGC +
Preference number: 4 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCEDLSW*SQDGHG
Trigger: GCCGTGGCCATCCTGGGAGCACCAGCTGAGATCTTC...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCTTCAGCCCACCCAGTaGAGTGTAGATGTTGCAGAC +
Preference number: 4 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSLQPTQ*SVDVAD
Trigger: GTCTGCAACATCTACACTGCACTGGGTGGGCTGAAG...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTCTTCAGCCCACCCAGTaGAGTGTAGATGTTGCAGAC +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGLQPTQ*SVDVAD
Trigger: GTCTGCAACATCTACACTGCACTGGGTGGGCTGAAG...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCATTAAGGGGAGGGGGTaGCACAGCAGAACTCATCCT +
Preference number: 4 (lower is better)
Translates to: RALKYCLKRARIDVENCPIKGRG*HSRTHP
Trigger: AGGATGAGTTCTGCTGTGGCACCCCCTCCCCTTAAT...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTATTAAGGGGAGGGGGTaGCACAGCAGAACTCATCCT +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGIKGRG*HSRTHP
Trigger: AGGATGAGTTCTGCTGTGGCACCCCCTCCCCTTAAT...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GTGAGTGAGTCATCTCTGCACTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAGAGCCTGAGGTTGTATaGAAGGGAGCTGCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: VSESSLHYKIASGCCLQREPEVV*KGAAVL
Trigger: GAGCACTGCAGCTCCCTTCCATACAACCTCAGGCTC...TCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAGTGCAGAGATGACTCACTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCATGGCCACGGCTGACTaGAAGGTGGCCAGCAAGGAC +
Preference number: 4 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCMATAD*KVASKD
Trigger: GTCCTTGCTGGCCACCTTCCAGTCAGCCGTGGCCAT...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTGTCACATTCCATACATaGCCCAAGCCACCCACTCTG +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGVTFHT*PKPPTL
Trigger: CAGAGTGGGTGGCTTGGGCCATGTATGGAATGTGAC...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCGTCACATTCCATACATaGCCCAAGCCACCCACTCTG +
Preference number: 4 (lower is better)
Translates to: RALKYCLKRARIDVENCPVTFHT*PKPPTL
Trigger: CAGAGTGGGTGGCTTGGGCCATGTATGGAATGTGAC...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCGTCACATTCCATACATaGCCCAAGCCACCCACTCTG +
Preference number: 4 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSVTFHT*PKPPTL
Trigger: CAGAGTGGGTGGCTTGGGCCATGTATGGAATGTGAC...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCACAGGGATGAAGATGTaGGCAGGGATCAGGAGCCCC +
Preference number: 4 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCTGMKM*AGIRSP
Trigger: GGGGCTCCTGATCCCTGCTCACATCTTCATCCCTGT...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCACAAGGAGAGCATCATaGAGACACCTCCAAAGGCCA +
Preference number: 4 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSTRRAS*RHLQRP
Trigger: TGGCCTTTGGAGGTGTCTTCATGATGCTCTCCTTGT...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTACAAGGAGAGCATCATaGAGACACCTCCAAAGGCCA +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGTRRAS*RHLQRP
Trigger: TGGCCTTTGGAGGTGTCTTCATGATGCTCTCCTTGT...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCTGAAGACAGCCCATTTTaGGGTCTGCCATCAGCAGTT +
Preference number: 4 (lower is better)
Translates to: ALKYCLKRARIDVENCPPEDSPF*GLPSAV
Trigger: AACTGCTGATGGCAGACCGCAAAATGGGCTGTCTTC...AGGGGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGGGCCAGCAAGGACAGTaGCACAGGAAGACAGCCCAT +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNEGQQGQ*HRKTAH
Trigger: ATGGGCTGTCTTCCTGTGGCACTGTCCTTGCTGGCC...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCATGATCACTACCAGCTaGCCGAGGAACATGACCAGT +
Preference number: 4 (lower is better)
Translates to: RALKYCLKRARIDVENCPMITTS*PRNMTS
Trigger: ACTGGTCATGTTCCTCGGGCAGCTGGTAGTGATCAT...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGCTGGCAAGGGAACACTaGATAGCAGGAGAGCACAGC +
Preference number: 4 (lower is better)
Translates to: GITRGLKRASQSCQIRSWLAREH*IAGEHS
Trigger: GCTGTGCTCTCCTGCTATGCAGTGTTCCCTTGCCAG...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCTTACTATGCTCCCAATaGCGATCCAGAAGGCCATGG +
Preference number: 4 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSLLCSQ*RSRRPW
Trigger: CCATGGCCTTCTGGATCGGCATTGGGAGCATAGTAA...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCTTTACTATGCTCCCAATaGCGATCCAGAAGGCCATGG +
Preference number: 4 (lower is better)
Translates to: ALKYCLKRARIDVENCPPLLCSQ*RSRRPW
Trigger: CCATGGCCTTCTGGATCGGCATTGGGAGCATAGTAA...AGGGGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTATTGAGGGCCAAGGATaGTGCATAGAGAGCAACTCC +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGIEGQG*CIESNS
Trigger: GGAGTTGCTCTCTATGCACCATCCTTGGCCCTCAAT...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTAGTTTCAGTCAACTGTaGGAACCAGGGCTGGATCAG +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGSFSQL*EPGLDQ
Trigger: CTGATCCAGCCCTGGTTCCCACAGTTGACTGAAACT...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCAGTTTCAGTCAACTGTaGGAACCAGGGCTGGATCAG +
Preference number: 4 (lower is better)
Translates to: RALKYCLKRARIDVENCPSFSQL*EPGLDQ
Trigger: CTGATCCAGCCCTGGTTCCCACAGTTGACTGAAACT...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCTATCACAGGGATATCCTaGCTGTGGCTTCTCCAGCAA +
Preference number: 4 (lower is better)
Translates to: ALKYCLKRARIDVENCPPITGIS*LWLLQQ
Trigger: TTGCTGGAGAAGCCACAGCCAGGATATCCCTGTGAT...AGGGGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTATCACAGGGATATCCTaGCTGTGGCTTCTCCAGCAA +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGITGIS*LWLLQQ
Trigger: TTGCTGGAGAAGCCACAGCCAGGATATCCCTGTGAT...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp TCCTGGGGCGGTTGTAAGAAATGCTGTTCCTACTCACTCCAAAGAACCCTGGTCCATGATAGAGCCCAATaGCAAGGGAGAGGACCAGCA +
Preference number: 4 (lower is better)
Translates to: SWGGCKKCCSYSLQRTLVHDRAQ*QGRGPA
Trigger: TGCTGGTCCTCTCCCTTGTCATTGGGCTCTATCATG...GACCAGGGTTCTTTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCCCCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCTCACCATCTGAAAGATaGAGGTCACAGTCCCACAGA +
Preference number: 4 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSSPSER*RSQSHR
Trigger: TCTGTGGGACTGTGACCTTCATCTTTCAGATGGTGA...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp TCCTGGGGCGGTTGTAAGAAATGCTGTTCCTACTCACTCCAAAGAACCCTGGTCGCTGCCCGAGGAACATaGCCAGTGTTTGGAACACAT +
Preference number: 4 (lower is better)
Translates to: SWGGCKKCCSYSLQRTLVAARGT*PVFGTH
Trigger: ATGTGTTCCAAACACTGGTCATGTTCCTCGGGCAGC...GACCAGGGTTCTTTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCCCCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATTCTCCGAGTGGGAACTaGGGTAGCGCTGCACCTGAG +
Preference number: 4 (lower is better)
Translates to: KASLSRVEVGKNERGLEYSPSGN*GSAAPE
Trigger: CTCAGGTGCAGCGCTACCTCAGTTCCCACTCGGAGA...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGTCAGGCCCACTACAATaGCTGTGGTGGAGTTGTGCG +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNESGPLQ*LWWSCA
Trigger: CGCACAACTCCACCACAGTCATTGTAGTGGGCCTGA...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCTCAGGCCCACTACAATaGCTGTGGTGGAGTTGTGCG +
Preference number: 4 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCSGPLQ*LWWSCA
Trigger: CGCACAACTCCACCACAGTCATTGTAGTGGGCCTGA...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTGTGCAGTGTAGATGTTaGAGACAATTCCTAGGGCCA +
Preference number: 4 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGVQCRC*RQFLGP
Trigger: TGGCCCTAGGAATTGTCTGCAACATCTACACTGCAC...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGCTTCAGCCCACCCAGTaGAGTGTAGATGTTGCAGAC +
Preference number: 4 (lower is better)
Translates to: GITRGLKRASQSCQIRSWLQPTQ*SVDVAD
Trigger: GTCTGCAACATCTACACTGCACTGGGTGGGCTGAAG...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCATGCAGAGGGCCACTTaGTGGCAAGGGAACACTGCA +
Preference number: 4 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCMQRAT*WQGNTA
Trigger: TGCAGTGTTCCCTTGCCAGCAAGTGGCCCTCTGCAT...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp TCCTGGGGCGGTTGTAAGAAATGCTGTTCCTACTCACTCCAAAGAACCCTGGTCATTAAGGGGAGGGGGTaGCACAGCAGAACTCATCCT +
Preference number: 4 (lower is better)
Translates to: SWGGCKKCCSYSLQRTLVIKGRG*HSRTHP
Trigger: AGGATGAGTTCTGCTGTGGCACCCCCTCCCCTTAAT...GACCAGGGTTCTTTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCCCCAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGGAGCCTGAGGTTGTATaGAAGGGAGCTGCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNEEPEVV*KGAAVL
Trigger: GAGCACTGCAGCTCCCTTCCATACAACCTCAGGCTC...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCGAGCCTGAGGTTGTATaGAAGGGAGCTGCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCEPEVV*KGAAVL
Trigger: GAGCACTGCAGCTCCCTTCCATACAACCTCAGGCTC...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGTTCACCAACGGTATaGTGGCCCCAGCCACGACAA +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNESSPTV*WPQPRQ
Trigger: TTGTCGTGGCTGGGGCCACCATACCGTTGGTGAACT...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCCAGGAACCAATACTaGGTTCCAAATCGGAAGATC +
Preference number: 4 (lower is better)
Translates to: RALKYCLKRARIDVENCPPRNQY*VPNRKI
Trigger: GATCTTCCGATTTGGAACCCAGTATTGGTTCCTGGG...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCAGGAACCAATACTaGGTTCCAAATCGGAAGATC +
Preference number: 4 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSPRNQY*VPNRKI
Trigger: GATCTTCCGATTTGGAACCCAGTATTGGTTCCTGGG...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATGAGCCCAGGCAGCCCTaGCATGTCTTTCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: KASLSRVEVGKNERGLEYEPRQP*HVFQEV
Trigger: GACCTCCTGAAAGACATGCCAGGGCTGCCTGGGCTC...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGTGTGGGAACCAGGGCTaGATCAGGTCTTCCATCGTG +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNECGNQG*IRSSIV
Trigger: CACGATGGAAGACCTGATCCAGCCCTGGTTCCCACA...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCTGTGGGAACCAGGGCTaGATCAGGTCTTCCATCGTG +
Preference number: 4 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCCGNQG*IRSSIV
Trigger: CACGATGGAAGACCTGATCCAGCCCTGGTTCCCACA...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCGAAGAGTCCCAGCAGTaGCCCTCCAACCATGCCAAA +
Preference number: 4 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCEESQQ*PSNHAK
Trigger: TTTGGCATGGTTGGAGGGCCACTGCTGGGACTCTTC...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATACAGGGATGAAGATGTaGGCAGGGATCAGGAGCCCC +
Preference number: 4 (lower is better)
Translates to: KASLSRVEVGKNERGLEYTGMKM*AGIRSP
Trigger: GGGGCTCCTGATCCCTGCTCACATCTTCATCCCTGT...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCGTGACAGTTGCCAGTaGATTGAATGCAGAGGATAT +
Preference number: 4 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSRDSCQ*IECRGY
Trigger: ATATCCTCTGCATTCAATTCACTGGCAACTGTCACG...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGTGCTGCCTGGAGCACTaGTCCCAGATGAGAGGAAAT +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNECCLEH*SQMRGN
Trigger: ATTTCCTCTCATCTGGGATCAGTGCTCCAGGCAGCA...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp TCCTGGGGCGGTTGTAAGAAATGCTGTTCCTACTCACTCCAAAGAACCCTGGTCGAAGACAGCCCATTTTaGGGTCTGCCATCAGCAGTT +
Preference number: 4 (lower is better)
Translates to: SWGGCKKCCSYSLQRTLVEDSPF*GLPSAV
Trigger: AACTGCTGATGGCAGACCGCAAAATGGGCTGTCTTC...GACCAGGGTTCTTTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCCCCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GTTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTGAAGATCTCAGCTGGTaGTCCCAGGATGGCCACGGC +
Preference number: 4 (lower is better)
Translates to: VPTHSKEPWSLNQMPPFSEDLSW*SQDGHG
Trigger: GCCGTGGCCATCCTGGGAGCACCAGCTGAGATCTTC...AGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGGAAGATCTCAGCTGGTaGTCCCAGGATGGCCACGGC +
Preference number: 4 (lower is better)
Translates to: VGKNERGLEYYREPERPQEDLSW*SQDGHG
Trigger: GCCGTGGCCATCCTGGGAGCACCAGCTGAGATCTTC...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCCTTCAGCCCACCCAGTaGAGTGTAGATGTTGCAGAC +
Preference number: 4 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCLQPTQ*SVDVAD
Trigger: GTCTGCAACATCTACACTGCACTGGGTGGGCTGAAG...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGTGGTCAGGGGCTGCTTaGTTCAGCTCGGGGCTCATG +
Preference number: 4 (lower is better)
Translates to: VGKNERGLEYYREPERPQWSGAA*FSSGLM
Trigger: CATGAGCCCCGAGCTGAAGCAAGCAGCCCCTGACCA...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GTTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTATGGCCACGGCTGACTaGAAGGTGGCCAGCAAGGAC +
Preference number: 4 (lower is better)
Translates to: VPTHSKEPWSLNQMPPFSMATAD*KVASKD
Trigger: GTCCTTGCTGGCCACCTTCCAGTCAGCCGTGGCCAT...AGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp TTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTCTGGTGCTCCCAGGATaGCCACGGCTGACTGGAAGG +
Preference number: 4 (lower is better)
Translates to: FLLTPKNPGHLIKCHPFLLVLPG*PRLTGR
Trigger: CCTTCCAGTCAGCCGTGGCCATCCTGGGAGCACCAG...AAGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GTGAGTGAGTCATCTCTGCACTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGACCCAGGAACCAATACTaGGTTCCAAATCGGAAGATC +
Preference number: 4 (lower is better)
Translates to: VSESSLHYKIASGCCLQRPRNQY*VPNRKI
Trigger: GATCTTCCGATTTGGAACCCAGTATTGGTTCCTGGG...TCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAGTGCAGAGATGACTCACTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGGTCACATTCCATACATaGCCCAAGCCACCCACTCTG +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNEVTFHT*PKPPTL
Trigger: CAGAGTGGGTGGCTTGGGCCATGTATGGAATGTGAC...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GTGAGTGAGTCATCTCTGCACTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGATCTCTGGAAACAGGTTaGGGATCACAGGGATATCCT +
Preference number: 4 (lower is better)
Translates to: VSESSLHYKIASGCCLQRSLETG*GSQGYP
Trigger: AGGATATCCCTGTGATCCCCAACCTGTTTCCAGAGA...TCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAGTGCAGAGATGACTCACTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGACAGGGATGAAGATGTaGGCAGGGATCAGGAGCCCC +
Preference number: 4 (lower is better)
Translates to: VGKNERGLEYYREPERPQTGMKM*AGIRSP
Trigger: GGGGCTCCTGATCCCTGCTCACATCTTCATCCCTGT...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCATGATCACTACCAGCTaGCCGAGGAACATGACCAGT +
Preference number: 4 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCMITTS*PRNMTS
Trigger: ACTGGTCATGTTCCTCGGGCAGCTGGTAGTGATCAT...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATCTGGCAAGGGAACACTaGATAGCAGGAGAGCACAGC +
Preference number: 4 (lower is better)
Translates to: KASLSRVEVGKNERGLEYLAREH*IAGEHS
Trigger: GCTGTGCTCTCCTGCTATGCAGTGTTCCCTTGCCAG...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGTTACTATGCTCCCAATaGCGATCCAGAAGGCCATGG +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNELLCSQ*RSRRPW
Trigger: CCATGGCCTTCTGGATCGGCATTGGGAGCATAGTAA...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGTCGGAAGATCTCAGCTaGTGCTCCCAGGATGGCCAC +
Preference number: 4 (lower is better)
Translates to: VGKNERGLEYYREPERPQSEDLS*CSQDGH
Trigger: GTGGCCATCCTGGGAGCACCAGCTGAGATCTTCCGA...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCATTGAGGGCCAAGGATaGTGCATAGAGAGCAACTCC +
Preference number: 4 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCIEGQG*CIESNS
Trigger: GGAGTTGCTCTCTATGCACCATCCTTGGCCCTCAAT...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GTTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTCGGCGACAGTTACATTaGCAGGCAGGAAGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: VPTHSKEPWSLNQMPPFSRRQLH*QAGRSW
Trigger: CCAGCTCCTTCCTGCCTGCCAATGTAACTGTCGCCG...AGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGTCTCTGGAAACAGGTTaGGGATCACAGGGATATCCT +
Preference number: 4 (lower is better)
Translates to: GITRGLKRASQSCQIRSWSLETG*GSQGYP
Trigger: AGGATATCCCTGTGATCCCCAACCTGTTTCCAGAGA...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GTGAGTGAGTCATCTCTGCACTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAATTCCTCATCTTCTCTaGAAACAGGTTGGGGATCAC +
Preference number: 4 (lower is better)
Translates to: VSESSLHYKIASGCCLQRIPHLL*KQVGDH
Trigger: GTGATCCCCAACCTGTTTCCAGAGAAGATGAGGAAT...TCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAGTGCAGAGATGACTCACTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGTCACCATCTGAAAGATaGAGGTCACAGTCCCACAGA +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNESPSER*RSQSHR
Trigger: TCTGTGGGACTGTGACCTTCATCTTTCAGATGGTGA...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCATGTATATCACCATCTaGAAGATGAAGGTCACAGTC +
Preference number: 4 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSMYITI*KMKVTV
Trigger: GACTGTGACCTTCATCTTTCAGATGGTGATATACAT...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATATCCAGTCACTGCATTaGGGGCCAAGGATGGTGCAT +
Preference number: 4 (lower is better)
Translates to: KASLSRVEVGKNERGLEYIQSLH*GPRMVH
Trigger: ATGCACCATCCTTGGCCCTCAATGCAGTGACTGGAT...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGGGCCTCGAGAAAGCATaGTGGCCCGAGTTTCAGTCA +
Preference number: 4 (lower is better)
Translates to: VGKNERGLEYYREPERPQGLEKA*WPEFQS
Trigger: TGACTGAAACTCGGGCCATCATGCTTTCTCGAGGCC...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp TTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTCGGCGACAGTTACATTaGCAGGCAGGAAGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: FLLTPKNPGHLIKCHPFLRRQLH*QAGRSW
Trigger: CCAGCTCCTTCCTGCCTGCCAATGTAACTGTCGCCG...AAGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGCATGATAGAGCCCAATaGCAAGGGAGAGGACCAGCA +
Preference number: 4 (lower is better)
Translates to: VGKNERGLEYYREPERPQHDRAQ*QGRGPA
Trigger: TGCTGGTCCTCTCCCTTGTCATTGGGCTCTATCATG...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GTGAGTGAGTCATCTCTGCACTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAATGTATATCACCATCTaGAAGATGAAGGTCACAGTC +
Preference number: 4 (lower is better)
Translates to: VSESSLHYKIASGCCLQRMYITI*KMKVTV
Trigger: GACTGTGACCTTCATCTTTCAGATGGTGATATACAT...TCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAGTGCAGAGATGACTCACTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGCGTGACAGTTGCCAGTaGATTGAATGCAGAGGATAT +
Preference number: 4 (lower is better)
Translates to: RPKDTKASLSRVEVGKNERDSCQ*IECRGY
Trigger: ATATCCTCTGCATTCAATTCACTGGCAACTGTCACG...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGGCCCATTTTGCGGTCTaGCATCAGCAGTTCACCAAC +
Preference number: 4 (lower is better)
Translates to: VGKNERGLEYYREPERPQAHFAV*HQQFTN
Trigger: GTTGGTGAACTGCTGATGGCAGACCGCAAAATGGGC...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp TTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTAGTTCACCAACGGTATaGTGGCCCCAGCCACGACAA +
Preference number: 4 (lower is better)
Translates to: FLLTPKNPGHLIKCHPFLSSPTV*WPQPRQ
Trigger: TTGTCGTGGCTGGGGCCACCATACCGTTGGTGAACT...AAGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACCTGGTGCTCCCAGGATaGCCACGGCTGACTGGAAGG +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDLVLPG*PRLTGR
Trigger: CCTTCCAGTCAGCCGTGGCCATCCTGGGAGCACCAG...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp TTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTGAAGAGTCCCAGCAGTaGCCCTCCAACCATGCCAAA +
Preference number: 4 (lower is better)
Translates to: FLLTPKNPGHLIKCHPFLEESQQ*PSNHAK
Trigger: TTTGGCATGGTTGGAGGGCCACTGCTGGGACTCTTC...AAGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATTCACCATCTGAAAGATaGAGGTCACAGTCCCACAGA +
Preference number: 4 (lower is better)
Translates to: KASLSRVEVGKNERGLEYSPSER*RSQSHR
Trigger: TCTGTGGGACTGTGACCTTCATCTTTCAGATGGTGA...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp TTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTGCTGCCCGAGGAACATaGCCAGTGTTTGGAACACAT +
Preference number: 4 (lower is better)
Translates to: FLLTPKNPGHLIKCHPFLAARGT*PVFGTH
Trigger: ATGTGTTCCAAACACTGGTCATGTTCCTCGGGCAGC...AAGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GTTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTACAAGGAGAGCATCATaGAGACACCTCCAAAGGCCA +
Preference number: 4 (lower is better)
Translates to: VPTHSKEPWSLNQMPPFSTRRAS*RHLQRP
Trigger: TGGCCTTTGGAGGTGTCTTCATGATGCTCTCCTTGT...AGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACTCTCCGAGTGGGAACTaGGGTAGCGCTGCACCTGAG +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDSPSGN*GSAAPE
Trigger: CTCAGGTGCAGCGCTACCTCAGTTCCCACTCGGAGA...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp TTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTGCCCATTTTGCGGTCTaGCATCAGCAGTTCACCAAC +
Preference number: 4 (lower is better)
Translates to: FLLTPKNPGHLIKCHPFLAHFAV*HQQFTN
Trigger: GTTGGTGAACTGCTGATGGCAGACCGCAAAATGGGC...AAGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATGTGCAGTGTAGATGTTaGAGACAATTCCTAGGGCCA +
Preference number: 4 (lower is better)
Translates to: KASLSRVEVGKNERGLEYVQCRC*RQFLGP
Trigger: TGGCCCTAGGAATTGTCTGCAACATCTACACTGCAC...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACGAGCCCAGGCAGCCCTaGCATGTCTTTCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDEPRQP*HVFQEV
Trigger: GACCTCCTGAAAGACATGCCAGGGCTGCCTGGGCTC...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGAGTTTCAGTCAACTGTaGGAACCAGGGCTGGATCAG +
Preference number: 4 (lower is better)
Translates to: VGKNERGLEYYREPERPQSFSQL*EPGLDQ
Trigger: CTGATCCAGCCCTGGTTCCCACAGTTGACTGAAACT...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp TTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTACAAGGAGAGCATCATaGAGACACCTCCAAAGGCCA +
Preference number: 4 (lower is better)
Translates to: FLLTPKNPGHLIKCHPFLTRRAS*RHLQRP
Trigger: TGGCCTTTGGAGGTGTCTTCATGATGCTCTCCTTGT...AAGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGGTGCAGTGTAGATGTTaGAGACAATTCCTAGGGCCA +
Preference number: 4 (lower is better)
Translates to: VGKNERGLEYYREPERPQVQCRC*RQFLGP
Trigger: TGGCCCTAGGAATTGTCTGCAACATCTACACTGCAC...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp TTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTATGATCACTACCAGCTaGCCGAGGAACATGACCAGT +
Preference number: 4 (lower is better)
Translates to: FLLTPKNPGHLIKCHPFLMITTS*PRNMTS
Trigger: ACTGGTCATGTTCCTCGGGCAGCTGGTAGTGATCAT...AAGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACTCGGAAGATCTCAGCTaGTGCTCCCAGGATGGCCAC +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDSEDLS*CSQDGH
Trigger: GTGGCCATCCTGGGAGCACCAGCTGAGATCTTCCGA...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp TTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTATTGAGGGCCAAGGATaGTGCATAGAGAGCAACTCC +
Preference number: 4 (lower is better)
Translates to: FLLTPKNPGHLIKCHPFLIEGQG*CIESNS
Trigger: GGAGTTGCTCTCTATGCACCATCCTTGGCCCTCAAT...AAGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp TTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTATCACAGGGATATCCTaGCTGTGGCTTCTCCAGCAA +
Preference number: 4 (lower is better)
Translates to: FLLTPKNPGHLIKCHPFLITGIS*LWLLQQ
Trigger: TTGCTGGAGAAGCCACAGCCAGGATATCCCTGTGAT...AAGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GTTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTTCTCTGGAAACAGGTTaGGGATCACAGGGATATCCT +
Preference number: 4 (lower is better)
Translates to: VPTHSKEPWSLNQMPPFSSLETG*GSQGYP
Trigger: AGGATATCCCTGTGATCCCCAACCTGTTTCCAGAGA...AGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACGGCCTCGAGAAAGCATaGTGGCCCGAGTTTCAGTCA +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDGLEKA*WPEFQS
Trigger: TGACTGAAACTCGGGCCATCATGCTTTCTCGAGGCC...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACATGCAGAGGGCCACTTaGTGGCAAGGGAACACTGCA +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDMQRAT*WQGNTA
Trigger: TGCAGTGTTCCCTTGCCAGCAAGTGGCCCTCTGCAT...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACTGTGGGAACCAGGGCTaGATCAGGTCTTCCATCGTG +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDCGNQG*IRSSIV
Trigger: CACGATGGAAGACCTGATCCAGCCCTGGTTCCCACA...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACGAAGAGTCCCAGCAGTaGCCCTCCAACCATGCCAAA +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDEESQQ*PSNHAK
Trigger: TTTGGCATGGTTGGAGGGCCACTGCTGGGACTCTTC...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGATTCCTCATCTTCTCTaGAAACAGGTTGGGGATCAC +
Preference number: 4 (lower is better)
Translates to: VGKNERGLEYYREPERPQIPHLL*KQVGDH
Trigger: GTGATCCCCAACCTGTTTCCAGAGAAGATGAGGAAT...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp GTTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTATTCCTCATCTTCTCTaGAAACAGGTTGGGGATCAC +
Preference number: 4 (lower is better)
Translates to: VPTHSKEPWSLNQMPPFSIPHLL*KQVGDH
Trigger: GTGATCCCCAACCTGTTTCCAGAGAAGATGAGGAAT...AGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACCATGATAGAGCCCAATaGCAAGGGAGAGGACCAGCA +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDHDRAQ*QGRGPA
Trigger: TGCTGGTCCTCTCCCTTGTCATTGGGCTCTATCATG...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACGCTGCCCGAGGAACATaGCCAGTGTTTGGAACACAT +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDAARGT*PVFGTH
Trigger: ATGTGTTCCAAACACTGGTCATGTTCCTCGGGCAGC...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACTGCTGCCTGGAGCACTaGTCCCAGATGAGAGGAAAT +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDCCLEH*SQMRGN
Trigger: ATTTCCTCTCATCTGGGATCAGTGCTCCAGGCAGCA...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGATGTATATCACCATCTaGAAGATGAAGGTCACAGTC +
Preference number: 4 (lower is better)
Translates to: VGKNERGLEYYREPERPQMYITI*KMKVTV
Trigger: GACTGTGACCTTCATCTTTCAGATGGTGATATACAT...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR GCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACATGATCACTACCAGCTaGCCGAGGAACATGACCAGT +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDMITTS*PRNMTS
Trigger: ACTGGTCATGTTCCTCGGGCAGCTGGTAGTGATCAT...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACATTGAGGGCCAAGGATaGTGCATAGAGAGCAACTCC +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDIEGQG*CIESNS
Trigger: GGAGTTGCTCTCTATGCACCATCCTTGGCCCTCAAT...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACCGTGACAGTTGCCAGTaGATTGAATGCAGAGGATAT +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDRDSCQ*IECRGY
Trigger: ATATCCTCTGCATTCAATTCACTGGCAACTGTCACG...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR TCA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACATGTATATCACCATCTaGAAGATGAAGGTCACAGTC +
Preference number: 4 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDMYITI*KMKVTV
Trigger: GACTGTGACCTTCATCTTTCAGATGGTGATATACAT...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS TCA 90 bp TCCAAATCGGAAGATCTCAGCTGGTGCTCCCAGGATGGCCACGGCTaGCTGGAAGGTGGCCAGCAAGGACAGTGCCACAGGAAGACAGCC +
Preference number: 5 (lower is better)
Translates to: SKSEDLSWCSQDGHG*LEGGQQGQCHRKTA
Trigger: GGCTGTCTTCCTGTGGCACTGTCCTTGCTGGCCACCTTCCAGTCAGCCGTGGCCATCCTGGGAGCACCAGCTGAGATCTTCCGATTTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 90 bp GAGTCCCGTCAACAGGCCTACAATGGCACCAAGAGGGTTGGCGCATaGGAAGAACAGTCCAAGGCAGAAGAGTCCCAGCAGTGGCCCTCC +
Preference number: 5 (lower is better)
Translates to: ESRQQAYNGTKRVGA*EEQSKAEESQQWPS
Trigger: GGAGGGCCACTGCTGGGACTCTTCTGCCTTGGACTGTTCTTCCCATGCGCCAACCCTCTTGGTGCCATTGTAGGCCTGTTGACGGGACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp CTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAGGGCAGAGTTCACGCCCCAGTGCAGTCCTGTGGGCTaGGACAGGGTAGAAGGCATC +
Preference number: 5 (lower is better)
Translates to: LQNSLRLLSAARAEFTPQCSPVG*DRVEGI
Trigger: GATGCCTTCTACCCTGTCCAAGCCCACAGGACTGCA...CTGGGGCGTGAACTCTGCCCTCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp CTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAGGGCAGAGTTCACGCCCCAGTCAGCCATCCTCTCTTaGTCTGTGCTGTCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: LQNSLRLLSAARAEFTPQSAILS*SVLSCS
Trigger: GCTGCAGGACAGCACAGACAAAGAGAGGATGGCTGA...CTGGGGCGTGAACTCTGCCCTCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 90 bp AATACTGGGTTCCAAATCGGAAGATCTCAGCTGGTGCTCCCAGGATaGCCACGGCTGACTGGAAGGTGGCCAGCAAGGACAGTGCCACAG +
Preference number: 5 (lower is better)
Translates to: NTGFQIGRSQLVLPG*PRLTGRWPARTVPQ
Trigger: CTGTGGCACTGTCCTTGCTGGCCACCTTCCAGTCAGCCGTGGCCATCCTGGGAGCACCAGCTGAGATCTTCCGATTTGGAACCCAGTATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCGCTGGAGCCTGAGGTaGTATGGAAGGGAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSRWSLR*YGRELQ
Trigger: CTGCAGCTCCCTTCCATACAACCTCAGGCTCCAGCG...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTCATGCAGAGGGCCACTaGCTGGCAAGGGAACACTGC +
Preference number: 5 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGHAEGH*LAREHC
Trigger: GCAGTGTTCCCTTGCCAGCAAGTGGCCCTCTGCATG...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCCCTCATGCAGAGGGCCACTaGCTGGCAAGGGAACACTGC +
Preference number: 5 (lower is better)
Translates to: ALKYCLKRARIDVENCPPHAEGH*LAREHC
Trigger: GCAGTGTTCCCTTGCCAGCAAGTGGCCCTCTGCATG...AGGGGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTGCGGCGACAGTTACATaGGCAGGCAGGAAGGAGCTG +
Preference number: 5 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGAATVT*AGRKEL
Trigger: CAGCTCCTTCCTGCCTGCCAATGTAACTGTCGCCGC...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS TCA 90 bp TCATCCTGCTTACTATGCTCCCAATGCCGATCCAGAAGGCCATGGTaGGTCCCGTCAACAGGCCTACAATGGCACCAAGAGGGTTGGCGC +
Preference number: 5 (lower is better)
Translates to: SSCLLCSQCRSRRPW*VPSTGLQWHQEGWR
Trigger: GCGCCAACCCTCTTGGTGCCATTGTAGGCCTGTTGACGGGACTCACCATGGCCTTCTGGATCGGCATTGGGAGCATAGTAAGCAGGATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 90 bp GGCAAGGCCTCGAGAAAGCATGATGGCCCGAGTTTCAGTCAACTGTaGGAACCAGGGCTGGATCAGGTCTTCCATCGTGACAGTTGCCAG +
Preference number: 5 (lower is better)
Translates to: GKASRKHDGPSFSQL*EPGLDQVFHRDSCQ
Trigger: CTGGCAACTGTCACGATGGAAGACCTGATCCAGCCCTGGTTCCCACAGTTGACTGAAACTCGGGCCATCATGCTTTCTCGAGGCCTTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GTGAGTGAGTCATCTCTGCACTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGACGCTGGAGCCTGAGGTaGTATGGAAGGGAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: VSESSLHYKIASGCCLQRRWSLR*YGRELQ
Trigger: CTGCAGCTCCCTTCCATACAACCTCAGGCTCCAGCG...TCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAGTGCAGAGATGACTCACTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS GCA 90 bp CTGGGAAGTCACATTCCATACATGGCCCAAGCCACCCACTCTGGCTaGTCCTACAATGATCACTACCAGCTGCCCGAGGAACATGACCAG +
Preference number: 5 (lower is better)
Translates to: LGSHIPYMAQATHSG*SYNDHYQLPEEHDQ
Trigger: CTGGTCATGTTCCTCGGGCAGCTGGTAGTGATCATTGTAGGAGCAGCCAGAGTGGGTGGCTTGGGCCATGTATGGAATGTGACTTCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2
CDS GCA 90 bp ACGGCTGGTGGACGAGGCCATCTTCAGCCATCCTCTCTTTGTCTGTaGTGTCCTGCAGCACCCCATTCCTCATCTTCTCTGGAAACAGGT +
Preference number: 5 (lower is better)
Translates to: TAGGRGHLQPSSLCL*CPAAPHSSSSLETG
Trigger: ACCTGTTTCCAGAGAAGATGAGGAATGGGGTGCTGCAGGACAGCACAGACAAAGAGAGGATGGCTGAAGATGGCCTCGTCCACCAGCCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 90 bp TTCCTCATCTTCTCTGGAAACAGGTTGGGGATCACAGGGATATCCTaGCTGTGGCTTCTCCAGCAAAGCCGCTTCTGGCAGGATAGGGGC +
Preference number: 5 (lower is better)
Translates to: FLIFSGNRLGITGIS*LWLLQQSRFWQDRG
Trigger: GCCCCTATCCTGCCAGAAGCGGCTTTGCTGGAGAAGCCACAGCCAGGATATCCCTGTGATCCCCAACCTGTTTCCAGAGAAGATGAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 90 bp TGCTGTCCTGCAGCACCCCATTCCTCATCTTCTCTGGAAACAGGTTaGGGATCACAGGGATATCCTGGCTGTGGCTTCTCCAGCAAAGCC +
Preference number: 5 (lower is better)
Translates to: CCPAAPHSSSSLETG*GSQGYPGCGFSSKA
Trigger: GGCTTTGCTGGAGAAGCCACAGCCAGGATATCCCTGTGATCCCCAACCTGTTTCCAGAGAAGATGAGGAATGGGGTGCTGCAGGACAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp TCCTGGGGCGGTTGTAAGAAATGCTGTTCCTACTCACTCCAAAGAACCCTGGTCCGCTGGAGCCTGAGGTaGTATGGAAGGGAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: SWGGCKKCCSYSLQRTLVRWSLR*YGRELQ
Trigger: CTGCAGCTCCCTTCCATACAACCTCAGGCTCCAGCG...GACCAGGGTTCTTTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCCCCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp TCCTGGGGCGGTTGTAAGAAATGCTGTTCCTACTCACTCCAAAGAACCCTGGTCGCGGCGACAGTTACATaGGCAGGCAGGAAGGAGCTG +
Preference number: 5 (lower is better)
Translates to: SWGGCKKCCSYSLQRTLVAATVT*AGRKEL
Trigger: CAGCTCCTTCCTGCCTGCCAATGTAACTGTCGCCGC...GACCAGGGTTCTTTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCCCCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTGGAGTGCTAGGAGCTTaGGCAGCACAGGGTAAATGG +
Preference number: 5 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGGVLGA*AAQGKW
Trigger: CCATTTACCCTGTGCTGCCAAAGCTCCTAGCACTCC...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCGGAGTGCTAGGAGCTTaGGCAGCACAGGGTAAATGG +
Preference number: 5 (lower is better)
Translates to: RALKYCLKRARIDVENCPGVLGA*AAQGKW
Trigger: CCATTTACCCTGTGCTGCCAAAGCTCCTAGCACTCC...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTTCAGCCATCCTCTCTTaGTCTGTGCTGTCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGSAILS*SVLSCS
Trigger: GCTGCAGGACAGCACAGACAAAGAGAGGATGGCTGA...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCTCAGCCATCCTCTCTTaGTCTGTGCTGTCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: RALKYCLKRARIDVENCPSAILS*SVLSCS
Trigger: GCTGCAGGACAGCACAGACAAAGAGAGGATGGCTGA...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GAGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCTCAGCCATCCTCTCTTaGTCTGTGCTGTCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: EGPEVLPEEGKDRCGKLSSAILS*SVLSCS
Trigger: GCTGCAGGACAGCACAGACAAAGAGAGGATGGCTGA...GGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS TCA 90 bp CAACGGTATGGTGGCCCCAGCCACGACAAGCATGATAGAGCCCAATaGCAAGGGAGAGGACCAGCAACAGGCCAAATACCACATAGTCCA +
Preference number: 5 (lower is better)
Translates to: QRYGGPSHDKHDRAQ*QGRGPATGQIPHSP
Trigger: TGGACTATGTGGTATTTGGCCTGTTGCTGGTCCTCTCCCTTGTCATTGGGCTCTATCATGCTTGTCGTGGCTGGGGCCACCATACCGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000200816.2
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS GCA 90 bp CCCAAGCCACCCACTCTGGCTGCTCCTACAATGATCACTACCAGCTaGCCGAGGAACATGACCAGTGTTTGGAACACATCTGTCCAGATG +
Preference number: 5 (lower is better)
Translates to: PKPPTLAAPTMITTS*PRNMTSVWNTSVQM
Trigger: CATCTGGACAGATGTGTTCCAAACACTGGTCATGTTCCTCGGGCAGCTGGTAGTGATCATTGTAGGAGCAGCCAGAGTGGGTGGCTTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2
CDS GCA 90 bp TGGACGAGGCCATCTTCAGCCATCCTCTCTTTGTCTGTGCTGTCCTaGAGCACCCCATTCCTCATCTTCTCTGGAAACAGGTTGGGGATC +
Preference number: 5 (lower is better)
Translates to: WTRPSSAILSLSVLS*STPFLIFSGNRLGI
Trigger: GATCCCCAACCTGTTTCCAGAGAAGATGAGGAATGGGGTGCTGCAGGACAGCACAGACAAAGAGAGGATGGCTGAAGATGGCCTCGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS GCA 90 bp AATGAGGCAGCTCATGCAGAGGGCCACTTGCTGGCAAGGGAACACTaGATAGCAGGAGTTAATCCCAGAGATGAGGCCATGCTGGGAAGT +
Preference number: 5 (lower is better)
Translates to: NEAAHAEGHLLAREH*IAGVNPRDEAMLGS
Trigger: ACTTCCCAGCATGGCCTCATCTCTGGGATTAACTCCTGCTATGCAGTGTTCCCTTGCCAGCAAGTGGCCCTCTGCATGAGCTGCCTCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202984.2
CDS-3UTR CAA 90 bp CTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAGGGCAGAGTTCACGCCCCAGACAGTTGCCAGTGAATaGAATGCAGAGGATATGGTG +
Preference number: 5 (lower is better)
Translates to: LQNSLRLLSAARAEFTPQTVASE*NAEDMV
Trigger: CACCATATCCTCTGCATTCAATTCACTGGCAACTGT...CTGGGGCGTGAACTCTGCCCTCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGTGCAGTCCTGTGGGCTaGGACAGGGTAGAAGGCATC +
Preference number: 5 (lower is better)
Translates to: GITRGLKRASQSCQIRSWCSPVG*DRVEGI
Trigger: GATGCCTTCTACCCTGTCCAAGCCCACAGGACTGCA...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp TCCTGGGGCGGTTGTAAGAAATGCTGTTCCTACTCACTCCAAAGAACCCTGGTCATGGCACCAAGAGGGTaGGCGCATGGGAAGAACAGT +
Preference number: 5 (lower is better)
Translates to: SWGGCKKCCSYSLQRTLVMAPRG*AHGKNS
Trigger: ACTGTTCTTCCCATGCGCCAACCCTCTTGGTGCCAT...GACCAGGGTTCTTTGGAGTGAGTAGGAACAGCATTTCTTACAACCGCCCCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGAGTGCTAGGAGCTTaGGCAGCACAGGGTAAATGG +
Preference number: 5 (lower is better)
Translates to: GITRGLKRASQSCQIRSWGVLGA*AAQGKW
Trigger: CCATTTACCCTGTGCTGCCAAAGCTCCTAGCACTCC...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 90 bp TTAATCCCAGAGATGAGGCCATGCTGGGAAGTCACATTCCATACATaGCCCAAGCCACCCACTCTGGCTGCTCCTACAATGATCACTACC +
Preference number: 5 (lower is better)
Translates to: LIPEMRPCWEVTFHT*PKPPTLAAPTMITT
Trigger: GGTAGTGATCATTGTAGGAGCAGCCAGAGTGGGTGGCTTGGGCCATGTATGGAATGTGACTTCCCAGCATGGCCTCATCTCTGGGATTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2
CDS-3UTR CAA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATCGCTGGAGCCTGAGGTaGTATGGAAGGGAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: KASLSRVEVGKNERGLEYRWSLR*YGRELQ
Trigger: CTGCAGCTCCCTTCCATACAACCTCAGGCTCCAGCG...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp ACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGGGCGGTATCCGAACTGCTTTATaGAAGCGGAGCTCTAGGTAC +
Preference number: 5 (lower is better)
Translates to: TRGLKRASQSCQIRSWGGIRTAL*KRSSRY
Trigger: GTACCTAGAGCTCCGCTTCAATAAAGCAGTTCGGAT...ACCGCCCCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGATGGCACCAAGAGGGTaGGCGCATGGGAAGAACAGT +
Preference number: 5 (lower is better)
Translates to: RPKDTKASLSRVEVGKNEMAPRG*AHGKNS
Trigger: ACTGTTCTTCCCATGCGCCAACCCTCTTGGTGCCAT...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCATGGCACCAAGAGGGTaGGCGCATGGGAAGAACAGT +
Preference number: 5 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCMAPRG*AHGKNS
Trigger: ACTGTTCTTCCCATGCGCCAACCCTCTTGGTGCCAT...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GTGAGTGAGTCATCTCTGCACTACAAAATAGCCTCCGGCTGCTGTCTGCAGCGAATGACTGTGGTGGAGTaGTGCGCGCTGTACCATAAA +
Preference number: 5 (lower is better)
Translates to: VSESSLHYKIASGCCLQRMTVVE*CALYHK
Trigger: TTTATGGTACAGCGCGCACAACTCCACCACAGTCAT...TCGCTGCAGACAGCAGCCGGAGGCTATTTTGTAGTGCAGAGATGACTCACTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCGGAGTGCTAGGAGCTTaGGCAGCACAGGGTAAATGG +
Preference number: 5 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCGVLGA*AAQGKW
Trigger: CCATTTACCCTGTGCTGCCAAAGCTCCTAGCACTCC...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS TCA 90 bp TGGGAACCAGGGCTGGATCAGGTCTTCCATCGTGACAGTTGCCAGTaGATTGAATGCAGAGGATATGGTGCTGAGAGATCCACTGAAGAG +
Preference number: 5 (lower is better)
Translates to: WEPGLDQVFHRDSCQ*IECRGYGAERSTEE
Trigger: CTCTTCAGTGGATCTCTCAGCACCATATCCTCTGCATTCAATTCACTGGCAACTGTCACGATGGAAGACCTGATCCAGCCCTGGTTCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 90 bp GAAAGCATGATGGCCCGAGTTTCAGTCAACTGTGGGAACCAGGGCTaGATCAGGTCTTCCATCGTGACAGTTGCCAGTGAATTGAATGCA +
Preference number: 5 (lower is better)
Translates to: ESMMARVSVNCGNQG*IRSSIVTVASELNA
Trigger: TGCATTCAATTCACTGGCAACTGTCACGATGGAAGACCTGATCCAGCCCTGGTTCCCACAGTTGACTGAAACTCGGGCCATCATGCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp AGGGCCCTGAAGTACTGCCTGAAGAGGGCAAGGATCGATGTGGAAAACTGTCCCGAACATGACCAGTGTTaGGAACACATCTGTCCAGAT +
Preference number: 5 (lower is better)
Translates to: RALKYCLKRARIDVENCPEHDQC*EHICPD
Trigger: ATCTGGACAGATGTGTTCCAAACACTGGTCATGTTC...GGGACAGTTTTCCACATCGATCCTTGCCCTCTTCAGGCAGTACTTCAGGGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GTTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTGCGGCGACAGTTACATaGGCAGGCAGGAAGGAGCTG +
Preference number: 5 (lower is better)
Translates to: VPTHSKEPWSLNQMPPFSAATVT*AGRKEL
Trigger: CAGCTCCTTCCTGCCTGCCAATGTAACTGTCGCCGC...AGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GGAATCACCAGAGGGCTAAAGAGAGCTAGTCAGTCTTGCCAAATCAGGTCCTGGATCCGAACTGCTTTATaGAAGCGGAGCTCTAGGTAC +
Preference number: 5 (lower is better)
Translates to: GITRGLKRASQSCQIRSWIRTAL*KRSSRY
Trigger: GTACCTAGAGCTCCGCTTCAATAAAGCAGTTCGGAT...CCAGGACCTGATTTGGCAAGACTGACTAGCTCTCTTTAGCCCTCTGGTGATTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCATGACTGTGGTGGAGTaGTGCGCGCTGTACCATAAA +
Preference number: 5 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCMTVVE*CALYHK
Trigger: TTTATGGTACAGCGCGCACAACTCCACCACAGTCAT...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp ACCAATCCTAAGAGAAGCTTGGCAAGGGATGAGGAAAAACTGTCTCGCCCTTGCGAACATGACCAGTGTTaGGAACACATCTGTCCAGAT +
Preference number: 5 (lower is better)
Translates to: TNPKRSLARDEEKLSRPCEHDQC*EHICPD
Trigger: ATCTGGACAGATGTGTTCCAAACACTGGTCATGTTC...GCAAGGGCGAGACAGTTTTTCCTCATCCCTTGCCAAGCTTCTCTTAGGATTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp AGACCCAAGGATACCAAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGACAGTTGCCAGTGAATaGAATGCAGAGGATATGGTG +
Preference number: 5 (lower is better)
Translates to: RPKDTKASLSRVEVGKNETVASE*NAEDMV
Trigger: CACCATATCCTCTGCATTCAATTCACTGGCAACTGT...CTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTTGGTATCCTTGGGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACCATGCAGAGGGCCACTaGCTGGCAAGGGAACACTGC +
Preference number: 5 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDHAEGH*LAREHC
Trigger: GCAGTGTTCCCTTGCCAGCAAGTGGCCCTCTGCATG...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACGCGGCGACAGTTACATaGGCAGGCAGGAAGGAGCTG +
Preference number: 5 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDAATVT*AGRKEL
Trigger: CAGCTCCTTCCTGCCTGCCAATGTAACTGTCGCCGC...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GTTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTATGACTGTGGTGGAGTaGTGCGCGCTGTACCATAAA +
Preference number: 5 (lower is better)
Translates to: VPTHSKEPWSLNQMPPFSMTVVE*CALYHK
Trigger: TTTATGGTACAGCGCGCACAACTCCACCACAGTCAT...AGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GTAGGTAAGAATGAGAGAGGACTTGAGTATTACAGAGAACCCGAAAGACCTCAGATCCGAACTGCTTTATaGAAGCGGAGCTCTAGGTAC +
Preference number: 5 (lower is better)
Translates to: VGKNERGLEYYREPERPQIRTAL*KRSSRY
Trigger: GTACCTAGAGCTCCGCTTCAATAAAGCAGTTCGGAT...CTGAGGTCTTTCGGGTTCTCTGTAATACTCAAGTCCTCTCTCATTCTTACCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATGAACATGACCAGTGTTaGGAACACATCTGTCCAGAT +
Preference number: 5 (lower is better)
Translates to: KASLSRVEVGKNERGLEYEHDQC*EHICPD
Trigger: ATCTGGACAGATGTGTTCCAAACACTGGTCATGTTC...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp AAAGCCTCCCTCTCAAGAGTCGAGGTAGGTAAGAATGAGAGAGGACTTGAGTATACAGTTGCCAGTGAATaGAATGCAGAGGATATGGTG +
Preference number: 5 (lower is better)
Translates to: KASLSRVEVGKNERGLEYTVASE*NAEDMV
Trigger: CACCATATCCTCTGCATTCAATTCACTGGCAACTGT...ATACTCAAGTCCTCTCTCATTCTTACCTACCTCGACTCTTGAGAGGGAGGCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp AACAAAATGCATGAAGAGGAAACTCCCAAAGGAAATAATAGTTGCACAGATGACGGAAGACAGCCCATTTaGCGGTCTGCCATCAGCAGT +
Preference number: 5 (lower is better)
Translates to: NKMHEEETPKGNNSCTDDGRQPI*RSAISS
Trigger: ACTGCTGATGGCAGACCGCAAAATGGGCTGTCTTCC...GTCATCTGTGCAACTATTATTTCCTTTGGGAGTTTCCTCTTCATGCATTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS-3UTR CAA 90 bp GTTCCTACTCACTCCAAAGAACCCTGGTCACTTAATCAAATGCCACCCTTTTCTACAGTTGCCAGTGAATaGAATGCAGAGGATATGGTG +
Preference number: 5 (lower is better)
Translates to: VPTHSKEPWSLNQMPPFSTVASE*NAEDMV
Trigger: CACCATATCCTCTGCATTCAATTCACTGGCAACTGT...AGAAAAGGGTGGCATTTGATTAAGTGACCAGGGTTCTTTGGAGTGAGTAGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS TCA 72 bp GAAGATCTCAGCTGGTGCTCCCAGGATGGCCACGGCTaGCTGGAAGGTGGCCAGCAAGGACAGTGCCACAGG +
Preference number: 6 (lower is better)
Translates to: EDLSWCSQDGHG*LEGGQQGQCHR
Trigger: CCTGTGGCACTGTCCTTGCTGGCCACCTTCCAGTCAGCCGTGGCCATCCTGGGAGCACCAGCTGAGATCTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CAA 90 bp GGGCTGCACGGCTGGTGGACGAGGCCATCTTCAGCCATCCTCTCTTaGTCTGTGCTGTCCTGCAGCACCCCATTCCTCATCTTCTCTGGA +
Preference number: 6 (lower is better)
Translates to: GLHGWWTRPSSAILS*SVLSCSTPFLIFSG
Trigger: TCCAGAGAAGATGAGGAATGGGGTGCTGCAGGACAGCACAGACAAAGAGAGGATGGCTGAAGATGGCCTCGTCCACCAGCCGTGCAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS TCA 72 bp GTCCCAGCAGTGGCCCTCCAACCATGCCAAAGATACTaGGTGCTGCCTGGAGCACTGATCCCAGATGAGAGG +
Preference number: 6 (lower is better)
Translates to: VPAVALQPCQRY*VLPGALIPDER
Trigger: CCTCTCATCTGGGATCAGTGCTCCAGGCAGCACTCAGTATCTTTGGCATGGTTGGAGGGCCACTGCTGGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS GCA 72 bp GGACAGTGCCACAGGAAGACAGCCCATTTTGCGGTCTaGCATCAGCAGTTCACCAACGGTATGGTGGCCCCA +
Preference number: 6 (lower is better)
Translates to: GQCHRKTAHFAV*HQQFTNGMVAP
Trigger: TGGGGCCACCATACCGTTGGTGAACTGCTGATGGCAGACCGCAAAATGGGCTGTCTTCCTGTGGCACTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000200816.2
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 72 bp TTCCAAATCGGAAGATCTCAGCTGGTGCTCCCAGGATaGCCACGGCTGACTGGAAGGTGGCCAGCAAGGACA +
Preference number: 6 (lower is better)
Translates to: FQIGRSQLVLPG*PRLTGRWPART
Trigger: TGTCCTTGCTGGCCACCTTCCAGTCAGCCGTGGCCATCCTGGGAGCACCAGCTGAGATCTTCCGATTTGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 72 bp ATATCCTGGCTGTGGCTTCTCCAGCAAAGCCGCTTCTaGCAGGATAGGGGCAGGAGTGCTAGGAGCTTTGGC +
Preference number: 6 (lower is better)
Translates to: ISWLWLLQQSRF*QDRGRSARSFG
Trigger: GCCAAAGCTCCTAGCACTCCTGCCCCTATCCTGCCAGAAGCGGCTTTGCTGGAGAAGCCACAGCCAGGATAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CAA 72 bp GACCAGACCAATGAGGCAGCTCATGCAGAGGGCCACTaGCTGGCAAGGGAACACTGCATAGCAGGAGAGCAC +
Preference number: 6 (lower is better)
Translates to: DQTNEAAHAEGH*LAREHCIAGEH
Trigger: GTGCTCTCCTGCTATGCAGTGTTCCCTTGCCAGCAAGTGGCCCTCTGCATGAGCTGCCTCATTGGTCTGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CAA 90 bp GGCAAACATGACCAGACCAATGAGGCAGCTCATGCAGAGGGCCACTaGCTGGCAAGGGAACACTGCATAGCAGGAGAGCACAGCAGCTCT +
Preference number: 6 (lower is better)
Translates to: GKHDQTNEAAHAEGH*LAREHCIAGEHSSS
Trigger: AGAGCTGCTGTGCTCTCCTGCTATGCAGTGTTCCCTTGCCAGCAAGTGGCCCTCTGCATGAGCTGCCTCATTGGTCTGGTCATGTTTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS TCA 72 bp GGTGGCCCCAGCCACGACAAGCATGATAGAGCCCAATaGCAAGGGAGAGGACCAGCAACAGGCCAAATACCA +
Preference number: 6 (lower is better)
Translates to: GGPSHDKHDRAQ*QGRGPATGQIP
Trigger: TGGTATTTGGCCTGTTGCTGGTCCTCTCCCTTGTCATTGGGCTCTATCATGCTTGTCGTGGCTGGGGCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000200816.2
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS GCA 72 bp AGGCAGGAAGGAGCTGGATCCATTAAGGGGAGGGGGTaGCACAGCAGAACTCATCCTGCTTACTATGCTCCC +
Preference number: 6 (lower is better)
Translates to: RQEGAGSIKGRG*HSRTHPAYYAP
Trigger: GGGAGCATAGTAAGCAGGATGAGTTCTGCTGTGGCACCCCCTCCCCTTAATGGATCCAGCTCCTTCCTGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CAA 90 bp GTGCTGTCCTGCAGCACCCCATTCCTCATCTTCTCTGGAAACAGGTaGGGGATCACAGGGATATCCTGGCTGTGGCTTCTCCAGCAAAGC +
Preference number: 6 (lower is better)
Translates to: VLSCSTPFLIFSGNR*GITGISWLWLLQQS
Trigger: GCTTTGCTGGAGAAGCCACAGCCAGGATATCCCTGTGATCCCCAACCTGTTTCCAGAGAAGATGAGGAATGGGGTGCTGCAGGACAGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS TCA 72 bp CTAGCCCATAGGCAAAGGCAAGGCCTCGAGAAAGCATaGTGGCCCGAGTTTCAGTCAACTGTGGGAACCAGG +
Preference number: 6 (lower is better)
Translates to: LAHRQRQGLEKA*WPEFQSTVGTR
Trigger: CCTGGTTCCCACAGTTGACTGAAACTCGGGCCATCATGCTTTCTCGAGGCCTTGCCTTTGCCTATGGGCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS GCA 72 bp CACATTCCATACATGGCCCAAGCCACCCACTCTGGCTaGTCCTACAATGATCACTACCAGCTGCCCGAGGAA +
Preference number: 6 (lower is better)
Translates to: HIPYMAQATHSG*SYNDHYQLPEE
Trigger: TTCCTCGGGCAGCTGGTAGTGATCATTGTAGGAGCAGCCAGAGTGGGTGGCTTGGGCCATGTATGGAATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2
CDS CCA 72 bp GAGATGAGGCCATGCTGGGAAGTCACATTCCATACATaGCCCAAGCCACCCACTCTGGCTGCTCCTACAATG +
Preference number: 6 (lower is better)
Translates to: EMRPCWEVTFHT*PKPPTLAAPTM
Trigger: CATTGTAGGAGCAGCCAGAGTGGGTGGCTTGGGCCATGTATGGAATGTGACTTCCCAGCATGGCCTCATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2
CDS CCA 72 bp TTCTCTGGAAACAGGTTGGGGATCACAGGGATATCCTaGCTGTGGCTTCTCCAGCAAAGCCGCTTCTGGCAG +
Preference number: 6 (lower is better)
Translates to: FSGNRLGITGIS*LWLLQQSRFWQ
Trigger: CTGCCAGAAGCGGCTTTGCTGGAGAAGCCACAGCCAGGATATCCCTGTGATCCCCAACCTGTTTCCAGAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS TCA 72 bp TTACTATGCTCCCAATGCCGATCCAGAAGGCCATGGTaGGTCCCGTCAACAGGCCTACAATGGCACCAAGAG +
Preference number: 6 (lower is better)
Translates to: LLCSQCRSRRPW*VPSTGLQWHQE
Trigger: CTCTTGGTGCCATTGTAGGCCTGTTGACGGGACTCACCATGGCCTTCTGGATCGGCATTGGGAGCATAGTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 72 bp TCAGGATCCAGGTTAATCCCAGAGATGAGGCCATGCTaGGAAGTCACATTCCATACATGGCCCAAGCCACCC +
Preference number: 6 (lower is better)
Translates to: SGSRLIPEMRPC*EVTFHTWPKPP
Trigger: GGGTGGCTTGGGCCATGTATGGAATGTGACTTCCCAGCATGGCCTCATCTCTGGGATTAACCTGGATCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 72 bp ATGGCCCGAGTTTCAGTCAACTGTGGGAACCAGGGCTaGATCAGGTCTTCCATCGTGACAGTTGCCAGTGAA +
Preference number: 6 (lower is better)
Translates to: MARVSVNCGNQG*IRSSIVTVASE
Trigger: TTCACTGGCAACTGTCACGATGGAAGACCTGATCCAGCCCTGGTTCCCACAGTTGACTGAAACTCGGGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CCA 72 bp TCGAGAAAGCATGATGGCCCGAGTTTCAGTCAACTGTaGGAACCAGGGCTGGATCAGGTCTTCCATCGTGAC +
Preference number: 6 (lower is better)
Translates to: SRKHDGPSFSQL*EPGLDQVFHRD
Trigger: GTCACGATGGAAGACCTGATCCAGCCCTGGTTCCCACAGTTGACTGAAACTCGGGCCATCATGCTTTCTCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS CAA 72 bp GATCACTACCAGCTGCCCGAGGAACATGACCAGTGTTaGGAACACATCTGTCCAGATGACAGCCTTCAGCCC +
Preference number: 6 (lower is better)
Translates to: DHYQLPEEHDQC*EHICPDDSLQP
Trigger: GGGCTGAAGGCTGTCATCTGGACAGATGTGTTCCAAACACTGGTCATGTTCCTCGGGCAGCTGGTAGTGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2
CDS CAA 72 bp GACCAGACCAATGAGGCAGCTCATGCAGAGGGCCACTaGCTGGCAAGGGAACACTGCATAGCAGGAGTTAAT +
Preference number: 6 (lower is better)
Translates to: DQTNEAAHAEGH*LAREHCIAGVN
Trigger: ATTAACTCCTGCTATGCAGTGTTCCCTTGCCAGCAAGTGGCCCTCTGCATGAGCTGCCTCATTGGTCTGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202984.2
CDS CAA 90 bp GGCAAACATGACCAGACCAATGAGGCAGCTCATGCAGAGGGCCACTaGCTGGCAAGGGAACACTGCATAGCAGGAGTTAATCCCAGAGAT +
Preference number: 6 (lower is better)
Translates to: GKHDQTNEAAHAEGH*LAREHCIAGVNPRD
Trigger: ATCTCTGGGATTAACTCCTGCTATGCAGTGTTCCCTTGCCAGCAAGTGGCCCTCTGCATGAGCTGCCTCATTGGTCTGGTCATGTTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202984.2
CDS GCA 72 bp CCCACTCTGGCTGCTCCTACAATGATCACTACCAGCTaGCCGAGGAACATGACCAGTGTTTGGAACACATCT +
Preference number: 6 (lower is better)
Translates to: PTLAAPTMITTS*PRNMTSVWNTS
Trigger: AGATGTGTTCCAAACACTGGTCATGTTCCTCGGGCAGCTGGTAGTGATCATTGTAGGAGCAGCCAGAGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2
CDS CCA 72 bp ATCACTACCAGCTGCCCGAGGAACATGACCAGTGTTTaGAACACATCTGTCCAGATGACAGCCTTCAGCCCA +
Preference number: 6 (lower is better)
Translates to: ITTSCPRNMTSV*NTSVQMTAFSP
Trigger: TGGGCTGAAGGCTGTCATCTGGACAGATGTGTTCCAAACACTGGTCATGTTCCTCGGGCAGCTGGTAGTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2
CDS TCA 72 bp GGGCTGGATCAGGTCTTCCATCGTGACAGTTGCCAGTaGATTGAATGCAGAGGATATGGTGCTGAGAGATCC +
Preference number: 6 (lower is better)
Translates to: GLDQVFHRDSCQ*IECRGYGAERS
Trigger: GGATCTCTCAGCACCATATCCTCTGCATTCAATTCACTGGCAACTGTCACGATGGAAGACCTGATCCAGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2
CDS CAA 90 bp AACCAGGGCTGGATCAGGTCTTCCATCGTGACAGTTGCCAGTGAATaGAATGCAGAGGATATGGTGCTGAGAGATCCACTGAAGAGACAG +
Preference number: 6 (lower is better)
Translates to: NQGWIRSSIVTVASE*NAEDMVLRDPLKRQ
Trigger: CTGTCTCTTCAGTGGATCTCTCAGCACCATATCCTCTGCATTCAATTCACTGGCAACTGTCACGATGGAAGACCTGATCCAGCCCTGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS TCA 72 bp GCACTGACAGCCATAAATCAAATCCAGTCACTGCATTaGGGGCCAAGGATGGTGCATAGAGAGCAACTCCCA +
Preference number: 6 (lower is better)
Translates to: ALTAINQIQSLH*GPRMVHREQLP
Trigger: TGGGAGTTGCTCTCTATGCACCATCCTTGGCCCTCAATGCAGTGACTGGATTTGATTTATGGCTGTCAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2
CDS CAA 72 bp TGGATCAGGTCTTCCATCGTGACAGTTGCCAGTGAATaGAATGCAGAGGATATGGTGCTGAGAGATCCACTG +
Preference number: 6 (lower is better)
Translates to: WIRSSIVTVASE*NAEDMVLRDPL
Trigger: CAGTGGATCTCTCAGCACCATATCCTCTGCATTCAATTCACTGGCAACTGTCACGATGGAAGACCTGATCCA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2
CDS TCA 72 bp CCTGAGCCTGATTCACTCCATACAAGGAGAGCATCATaGAGACACCTCCAAAGGCCAAAGTCCAGAAAGTAT +
Preference number: 6 (lower is better)
Translates to: PEPDSLHTRRAS*RHLQRPKSRKY
Trigger: ATACTTTCTGGACTTTGGCCTTTGGAGGTGTCTTCATGATGCTCTCCTTGTATGGAGTGAATCAGGCTCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
CDS GCA 72 bp ATCAAATCCAGTCACTGCATTGAGGGCCAAGGATGGTaGATAGAGAGCAACTCCCATGTATATCACCATCTG +
Preference number: 6 (lower is better)
Translates to: IKSSHCIEGQGW*IESNSHVYHHL
Trigger: CAGATGGTGATATACATGGGAGTTGCTCTCTATGCACCATCCTTGGCCCTCAATGCAGTGACTGGATTTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000080431.8
ENSMUST00000114668.7
ENSMUST00000202520.4
ENSMUST00000202556.4
ENSMUST00000202984.2