Pregenerated sensors for SLC5A4A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020229

Ensembl transcript IDs: ENSMUST00000020450.4

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	ACGTGGGACAGGTTCTTGCCACATAAGCAGCGCTGTACAATGACCTaGTTTATGCACCAGTACCACAAAGCTGTAATAGGCATTCCAAAC	+
Preference number: 5 (lower is better) Translates to: TWDRFLPHKQRCTMT*FMHQYHKAVIGIPN Trigger: GTTTGGAATGCCTATTACAGCTTTGTGGTACTGGTGCATAAACCAGGTCATTGTACAGCGCTGCTTATGTGGCAAGAACCTGTCCCACGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020450.4
CDS CCA 90 bp	AATAGGTCACACGTCTTCTTGAGACATCCACGAGGTTTCTCAGTTTaGTCTTCTTCAGTTCTATCATCAGCTCCGTTCTCCTCCTTGTCT	+
Preference number: 5 (lower is better) Translates to: NRSHVFLRHPRGFSV*SSSVLSSAPFSSLS Trigger: AGACAAGGAGGAGAACGGAGCTGATGATAGAACTGAAGAAGACCAAACTGAGAAACCTCGTGGATGTCTCAAGAAGACGTGTGACCTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020450.4
CDS GCA 90 bp	GTCAGAGCTTCCTCCTCTACTTTAGTCAACTTGAATTCAGCTCTTTaGAAACCACAGAATAGGTCACACGTCTTCTTGAGACATCCACGA	+
Preference number: 5 (lower is better) Translates to: VRASSSTLVNLNSAL*KPQNRSHVFLRHPR Trigger: TCGTGGATGTCTCAAGAAGACGTGTGACCTATTCTGTGGTTTGCAAAGAGCTGAATTCAAGTTGACTAAAGTAGAGGAGGAAGCTCTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020450.4
CDS GCA 72 bp	GATGACAGCCTGGACGGTGTCTGTGTAAATCACGGATaGCAAGCCCCCGGTGATTGTGAAGATGGCTGTGAT	+
Preference number: 6 (lower is better) Translates to: DDSLDGVCVNHG*QAPGDCEDGCD Trigger: ATCACAGCCATCTTCACAATCACCGGGGGCTTGGCATCCGTGATTTACACAGACACCGTCCAGGCTGTCATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020450.4
CDS CCA 72 bp	AGGTTCTTGCCACATAAGCAGCGCTGTACAATGACCTaGTTTATGCACCAGTACCACAAAGCTGTAATAGGC	+
Preference number: 6 (lower is better) Translates to: RFLPHKQRCTMT*FMHQYHKAVIG Trigger: GCCTATTACAGCTTTGTGGTACTGGTGCATAAACCAGGTCATTGTACAGCGCTGCTTATGTGGCAAGAACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020450.4
CDS CAA 72 bp	ACACGTCTTCTTGAGACATCCACGAGGTTTCTCAGTTaGGTCTTCTTCAGTTCTATCATCAGCTCCGTTCTC	+
Preference number: 6 (lower is better) Translates to: TRLLETSTRFLS*VFFSSIISSVL Trigger: GAGAACGGAGCTGATGATAGAACTGAAGAAGACCAAACTGAGAAACCTCGTGGATGTCTCAAGAAGACGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020450.4
CDS CAA 72 bp	GCTCTTTGCAAACCACAGAATAGGTCACACGTCTTCTaGAGACATCCACGAGGTTTCTCAGTTTGGTCTTCT	+
Preference number: 6 (lower is better) Translates to: ALCKPQNRSHVF*RHPRGFSVWSS Trigger: AGAAGACCAAACTGAGAAACCTCGTGGATGTCTCAAGAAGACGTGTGACCTATTCTGTGGTTTGCAAAGAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020450.4
CDS CAA 90 bp	TTCTCTGTTGTGTCTGTCAGAGCTTCCTCCTCTACTTTAGTCAACTaGAATTCAGCTCTTTGCAAACCACAGAATAGGTCACACGTCTTC	+
Preference number: 6 (lower is better) Translates to: FSVVSVRASSSTLVN*NSALCKPQNRSHVF Trigger: GAAGACGTGTGACCTATTCTGTGGTTTGCAAAGAGCTGAATTCAAGTTGACTAAAGTAGAGGAGGAAGCTCTGACAGACACAACAGAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020450.4
CDS CAA 72 bp	TCTTCTTCAGTTCTATCATCAGCTCCGTTCTCCTCCTaGTCTTCTGCGTCTAAATCGATTCTTTCCTCCTTA	+
Preference number: 6 (lower is better) Translates to: SSSVLSSAPFSS*SSASKSILSSL Trigger: TAAGGAGGAAAGAATCGATTTAGACGCAGAAGACAAGGAGGAGAACGGAGCTGATGATAGAACTGAAGAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020450.4
CDS CAA 90 bp	TTGAATTCAGCTCTTTGCAAACCACAGAATAGGTCACACGTCTTCTaGAGACATCCACGAGGTTTCTCAGTTTGGTCTTCTTCAGTTCTA	+
Preference number: 6 (lower is better) Translates to: LNSALCKPQNRSHVF*RHPRGFSVWSSSVL Trigger: TAGAACTGAAGAAGACCAAACTGAGAAACCTCGTGGATGTCTCAAGAAGACGTGTGACCTATTCTGTGGTTTGCAAAGAGCTGAATTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020450.4

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