Pregenerated sensors for SLC5A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000011034Ensembl transcript IDs: ENSMUST00000011178.5
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGCCATCTAGAACTGAGGCTGGCTGCCTTAGCCTGGTCGGTGGGTaGCCCCCTGTGAAGACCCATTACAAGCCAATCATTGTGGCCATG | + |
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Preference number: 1 (lower is better) Translates to: LPSRTEAGCLSLVGG*PPVKTHYKPIIVAM Trigger: CATGGCCACAATGATTGGCTTGTAATGGGTCTTCACAGGGGGTCACCCACCGACCAGGCTAAGGCAGCCAGCCTCAGTTCTAGATGGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR CCA 90 bp | CACACATGGGAAAGAGGACCTCAGGCTAATGATTTCAATGATTCCTaGGAGAGTGTGCTGCATCAGGAAGGCAGATGTCCCTGCAGGGGC | + |
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Preference number: 1 (lower is better) Translates to: HTWERGPQANDFNDS*ESVLHQEGRCPCRG Trigger: GCCCCTGCAGGGACATCTGCCTTCCTGATGCAGCACACTCTCCCAGGAATCATTGAAATCATTAGCCTGAGGTCCTCTTTCCCATGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR CCA 90 bp | TGTGAAGACCCATTACAAGCCAATCATTGTGGCCATGTGCACACATaGGAAAGAGGACCTCAGGCTAATGATTTCAATGATTCCTGGGAG | + |
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Preference number: 1 (lower is better) Translates to: CEDPLQANHCGHVHT*ERGPQANDFNDSWE Trigger: CTCCCAGGAATCATTGAAATCATTAGCCTGAGGTCCTCTTTCCCATGTGTGCACATGGCCACAATGATTGGCTTGTAATGGGTCTTCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR GCA 90 bp | GTGTGTCAACATCAGCACCACGAGGCAGAGAGAGACACTAGAAAATaGATTCCACTCCATAATAGACTCCACTGGTATATTTTGTGCAGG | + |
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Preference number: 1 (lower is better) Translates to: VCQHQHHEAERDTRK*IPLHNRLHWYILCR Trigger: CCTGCACAAAATATACCAGTGGAGTCTATTATGGAGTGGAATGCATTTTCTAGTGTCTCTCTCTGCCTCGTGGTGCTGATGTTGACACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR GCA 90 bp | CAAACAGCTCTCTCCAGATTTTCTTTCTTCTATAACAAGAAGCCATaGATTGACACTCCAAGACACTTCTATGCCCAACACCTCACTCAG | + |
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Preference number: 1 (lower is better) Translates to: QTALSRFSFFYNKKP*IDTPRHFYAQHLTQ Trigger: CTGAGTGAGGTGTTGGGCATAGAAGTGTCTTGGAGTGTCAATGCATGGCTTCTTGTTATAGAAGAAAGAAAATCTGGAGAGAGCTGTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR TCA 90 bp | GACACCCTGAGCCCACGCCCTGCGTGTGCTGGACATGGGTGGTTCCCCAATCTCCAAGCTGAGACAGAGTaGCATCAGACAACACAGGGC | + |
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Preference number: 2 (lower is better) Translates to: DTLSPRPACAGHGWFPNLQAETE*HQTTQG Trigger: GCCCTGTGTTGTCTGATGTCACTCTGTCTCAGCTTG...GAGATTGGGGAACCACCCATGTCCAGCACACGCAGGGCGTGGGCTCAGGGTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR GCA 90 bp | TACAAGCACCAAGATAGTCCATCTTCCACAGGGAAAGCACACAGTTCAGATAAACCTGAGCCCACGCCCTaGGTGTGCTGGACATGGGTG | + |
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Preference number: 2 (lower is better) Translates to: YKHQDSPSSTGKAHSSDKPEPTP*VCWTWV Trigger: CACCCATGTCCAGCACACGCAGGGCGTGGGCTCAGG...TTTATCTGAACTGTGTGCTTTCCCTGTGGAAGATGGACTATCTTGGTGCTTGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR GCA 90 bp | GACTGTATTGTGTGTCAACATCAGCACCACGAGGCAGAGAGAGACACTAGAAAATGGACATCTTCCCCTTaGCACTACAGAGTGGGTCAA | + |
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Preference number: 2 (lower is better) Translates to: DCIVCQHQHHEAERDTRKWTSSP*HYRVGQ Trigger: TTGACCCACTCTGTAGTGGCAAGGGGAAGATGTCCA...TTTTCTAGTGTCTCTCTCTGCCTCGTGGTGCTGATGTTGACACACAATACAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR CCA 90 bp | AGAGTGACATCAGACAACACAGGGCTTCTGTGTCTTGGCATGACTTTTCCTATATCTAAAGCTCTGGCATaGCAGATGAGTGTGGCACAC | + |
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Preference number: 2 (lower is better) Translates to: RVTSDNTGLLCLGMTFPISKALA*QMSVAH Trigger: GTGTGCCACACTCATCTGCCATGCCAGAGCTTTAGA...TATAGGAAAAGTCATGCCAAGACACAGAAGCCCTGTGTTGTCTGATGTCACTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR CCA 90 bp | CTTACAGGGAACAAGAAAATACCTCAAACAGCTCTCTCCAGATTTTCTTTCTTCCTTGCCACTACAGAGTaGGTCAAAAGGGGGAAGAAC | + |
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Preference number: 2 (lower is better) Translates to: LTGNKKIPQTALSRFSFFLATTE*VKRGKN Trigger: GTTCTTCCCCCTTTTGACCCACTCTGTAGTGGCAAG...GAAGAAAGAAAATCTGGAGAGAGCTGTTTGAGGTATTTTCTTGTTCCCTGTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR CCA 90 bp | TTCTTCTATAACAAGAAGCCATGCATTGACACTCCAAGACACTTCTATGCCCAAACAAGCCAATCATTGTaGCCATGTGCACACATGGGA | + |
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Preference number: 2 (lower is better) Translates to: FFYNKKPCIDTPRHFYAQTSQSL*PCAHMG Trigger: TCCCATGTGTGCACATGGCCACAATGATTGGCTTGT...TTGGGCATAGAAGTGTCTTGGAGTGTCAATGCATGGCTTCTTGTTATAGAAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR GCA 90 bp | CTTACAGGGAACAAGAAAATACCTCAAACAGCTCTCTCCAGATTTTCTTTCTTCTCCAAGACACTTCTATaGCCAACACCTCACTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: LTGNKKIPQTALSRFSFFSKTLL*PTPHSA Trigger: AGCTGAGTGAGGTGTTGGGCATAGAAGTGTCTTGGA...GAAGAAAGAAAATCTGGAGAGAGCTGTTTGAGGTATTTTCTTGTTCCCTGTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR CCA 90 bp | TACAAGCACCAAGATAGTCCATCTTCCACAGGGAAAGCACACAGTTCAGATAAAAGGGCTTCTGTGTCTTaGCATGACTTTTCCTATATC | + |
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Preference number: 2 (lower is better) Translates to: YKHQDSPSSTGKAHSSDKRASVS*HDFSYI Trigger: GATATAGGAAAAGTCATGCCAAGACACAGAAGCCCT...TTTATCTGAACTGTGTGCTTTCCCTGTGGAAGATGGACTATCTTGGTGCTTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR CCA 90 bp | CTTACAGGGAACAAGAAAATACCTCAAACAGCTCTCTCCAGATTTTCTTTCTTCGATTTCAATGATTCCTaGGAGAGTGTGCTGCATCAG | + |
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Preference number: 2 (lower is better) Translates to: LTGNKKIPQTALSRFSFFDFNDS*ESVLHQ Trigger: CTGATGCAGCACACTCTCCCAGGAATCATTGAAATC...GAAGAAAGAAAATCTGGAGAGAGCTGTTTGAGGTATTTTCTTGTTCCCTGTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR CCA 90 bp | CTTACAGGGAACAAGAAAATACCTCAAACAGCTCTCTCCAGATTTTCTTTCTTCATGAGTGTGGCACACTaGCTTCAAATGCATAAGTTC | + |
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Preference number: 2 (lower is better) Translates to: LTGNKKIPQTALSRFSFFMSVAH*LQMHKF Trigger: GAACTTATGCATTTGAAGCCAGTGTGCCACACTCAT...GAAGAAAGAAAATCTGGAGAGAGCTGTTTGAGGTATTTTCTTGTTCCCTGTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR TCA 90 bp | AGCTTACAGGGAACAAGAAAATACCTCAAACAGCTCTCTCCAGATTTTCTTTCTTTCTGTGTCTTGGCATaGCTTTTCCTATATCTGAGT | + |
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Preference number: 2 (lower is better) Translates to: SLQGTRKYLKQLSPDFLSFCVLA*LFLYLS Trigger: ACTCAGATATAGGAAAAGTCATGCCAAGACACAGAA...AGAAAGAAAATCTGGAGAGAGCTGTTTGAGGTATTTTCTTGTTCCCTGTAAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR TCA 72 bp | AGAACTGAGGCTGGCTGCCTTAGCCTGGTCGGTGGGTaGCCCCCTGTGAAGACCCATTACAAGCCAATCATT | + |
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Preference number: 3 (lower is better) Translates to: RTEAGCLSLVGG*PPVKTHYKPII Trigger: AATGATTGGCTTGTAATGGGTCTTCACAGGGGGTCACCCACCGACCAGGCTAAGGCAGCCAGCCTCAGTTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR GCA 72 bp | TGGGAGAGTGTGCTGCATCAGGAAGGCAGATGTCCCTaGAGGGGCATTTACTCTGTCCTATCAAGTAGTGTC | + |
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Preference number: 3 (lower is better) Translates to: WESVLHQEGRCP*RGIYSVLSSSV Trigger: GACACTACTTGATAGGACAGAGTAAATGCCCCTGCAGGGACATCTGCCTTCCTGATGCAGCACACTCTCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR GCA 72 bp | CTCAGGCTAATGATTTCAATGATTCCTGGGAGAGTGTaGTGCATCAGGAAGGCAGATGTCCCTGCAGGGGCA | + |
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Preference number: 3 (lower is better) Translates to: LRLMISMIPGRV*CIRKADVPAGA Trigger: TGCCCCTGCAGGGACATCTGCCTTCCTGATGCAGCACACTCTCCCAGGAATCATTGAAATCATTAGCCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR CAA 90 bp | GACTGTATTGTGTGTCAACATCAGCACCACGAGGCAGAGAGAGACACTAGAAAAGTGGACATCTTCCCCTaGCCACTACAGAGTGGGTCA | + |
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Preference number: 3 (lower is better) Translates to: DCIVCQHQHHEAERDTRKVDIFP*PLQSGS Trigger: TGACCCACTCTGTAGTGGCAAGGGGAAGATGTCCAC...TTTTCTAGTGTCTCTCTCTGCCTCGTGGTGCTGATGTTGACACACAATACAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR CCA 72 bp | GAAAGAGGACCTCAGGCTAATGATTTCAATGATTCCTaGGAGAGTGTGCTGCATCAGGAAGGCAGATGTCCC | + |
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Preference number: 3 (lower is better) Translates to: ERGPQANDFNDS*ESVLHQEGRCP Trigger: GGGACATCTGCCTTCCTGATGCAGCACACTCTCCCAGGAATCATTGAAATCATTAGCCTGAGGTCCTCTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR CAA 90 bp | AGAGTGACATCAGACAACACAGGGCTTCTGTGTCTTGGCATGACTTTTCCTATAAGAACAATGCTAGAGTaGCCGAGTCTACACCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: RVTSDNTGLLCLGMTFPIRTMLE*PSLHQK Trigger: CTTCTGGTGTAGACTCGGCAACTCTAGCATTGTTCT...TATAGGAAAAGTCATGCCAAGACACAGAAGCCCTGTGTTGTCTGATGTCACTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR GCA 72 bp | AGCCAATGGGACTATAACACAACTTATTATAGCATCTaGCCACACGCAGCTGTTTATGTCCATCCCCCTTTC | + |
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Preference number: 3 (lower is better) Translates to: SQWDYNTTYYSI*PHAAVYVHPPF Trigger: GAAAGGGGGATGGACATAAACAGCTGCGTGTGGGCAGATGCTATAATAAGTTGTGTTATAGTCCCATTGGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR CCA 72 bp | CCATTACAAGCCAATCATTGTGGCCATGTGCACACATaGGAAAGAGGACCTCAGGCTAATGATTTCAATGAT | + |
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Preference number: 3 (lower is better) Translates to: PLQANHCGHVHT*ERGPQANDFND Trigger: ATCATTGAAATCATTAGCCTGAGGTCCTCTTTCCCATGTGTGCACATGGCCACAATGATTGGCTTGTAATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR CAA 90 bp | AGCTTACAGGGAACAAGAAAATACCTCAAACAGCTCTCTCCAGATTTTCTTTCTTCTCAGTACTCAAGGTaGGCTGTACCCCTGATTGGT | + |
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Preference number: 3 (lower is better) Translates to: SLQGTRKYLKQLSPDFLSSQYSR*AVPLIG Trigger: ACCAATCAGGGGTACAGCCAACCTTGAGTACTGAGA...AGAAAGAAAATCTGGAGAGAGCTGTTTGAGGTATTTTCTTGTTCCCTGTAAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR-3UTR CAA 90 bp | AGCTTACAGGGAACAAGAAAATACCTCAAACAGCTCTCTCCAGATTTTCTTTCTATTACAAGCCAATCATaGTGGCCATGTGCACACATG | + |
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Preference number: 3 (lower is better) Translates to: SLQGTRKYLKQLSPDFLSITSQS*WPCAHM Trigger: CATGTGTGCACATGGCCACAATGATTGGCTTGTAAT...AGAAAGAAAATCTGGAGAGAGCTGTTTGAGGTATTTTCTTGTTCCCTGTAAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR CCA 90 bp | AAAACCACCAAGCACCTGCCATCTAGAACTGAGGCTGGCTGCCTTAGCCTGGTCGTCCTTGGAGTCCTCTaGGATGTCCTCCTCCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: KTTKHLPSRTEAGCLSLVVLGVL*DVLLLS Trigger: GGAGAGGAGGAGGACATCCCAGAGGACTCCAAGGAC...GACCAGGCTAAGGCAGCCAGCCTCAGTTCTAGATGGCAGGTGCTTGGTGGTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR GCA 90 bp | AAAACCACCAAGCACCTGCCATCTAGAACTGAGGCTGGCTGCCTTAGCCTGGTCGAGCTCCTTCTCAGATaGCTTCTTCCGGATCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: KTTKHLPSRTEAGCLSLVELLLR*LLPDLG Trigger: ACCAAGATCCGGAAGAAGGCATCTGAGAAGGAGCTC...GACCAGGCTAAGGCAGCCAGCCTCAGTTCTAGATGGCAGGTGCTTGGTGGTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | ATTACAAGCCAATCATTGTGGCCATGTGCACACATGGGAAAGAGGACCTCAGGCGTACCCAGGCAATGCTaGTGCCAATCAGCACGAGGA | + |
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Preference number: 4 (lower is better) Translates to: ITSQSLWPCAHMGKRTSGVPRQC*CQSARG Trigger: TCCTCGTGCTGATTGGCATCAGCATTGCCTGGGTAC...GCCTGAGGTCCTCTTTCCCATGTGTGCACATGGCCACAATGATTGGCTTGTAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR GCA 90 bp | AGGCAGAGAGAGACACTAGAAAATGCATTCCACTCCATAATAGACTCCACTGGTGGCTGCTCCTGTGCCTaGCAGCCCCACAAAGTGACC | + |
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Preference number: 4 (lower is better) Translates to: RQRETLENAFHSIIDSTGGCSCA*QPHKVT Trigger: GGTCACTTTGTGGGGCTGGCAGGCACAGGAGCAGCC...ACCAGTGGAGTCTATTATGGAGTGGAATGCATTTTCTAGTGTCTCTCTCTGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | GACTGTATTGTGTGTCAACATCAGCACCACGAGGCAGAGAGAGACACTAGAAAACGCTGCACAATGACCTaGTCCGTACACCAGTACCAC | + |
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Preference number: 4 (lower is better) Translates to: DCIVCQHQHHEAERDTRKRCTMT*SVHQYH Trigger: GTGGTACTGGTGTACGGATCAGGTCATTGTGCAGCG...TTTTCTAGTGTCTCTCTCTGCCTCGTGGTGCTGATGTTGACACACAATACAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR CCA 90 bp | TACAAGCACCAAGATAGTCCATCTTCCACAGGGAAAGCACACAGTTCAGATAAATCTTGGGGCAGTTGCTaGGCTCCATGCAGCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: YKHQDSPSSTGKAHSSDKSWGSC*APCSSQ Trigger: CTGGGAGCTGCATGGAGCCCAGCAACTGCCCCAAGA...TTTATCTGAACTGTGTGCTTTCCCTGTGGAAGATGGACTATCTTGGTGCTTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | CAACATCAGCACCACGAGGCAGAGAGAGACACTAGAAAATGCATTCCACTCCATCTGCAGAGATCTTTGTaGAGATGTAGAGGAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: QHQHHEAERDTRKCIPLHLQRSL*RCRGAG Trigger: CCCTGCTCCTCTACATCTTCACAAAGATCTCTGCAG...ATGGAGTGGAATGCATTTTCTAGTGTCTCTCTCTGCCTCGTGGTGCTGATGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | TTCTTCTATAACAAGAAGCCATGCATTGACACTCCAAGACACTTCTATGCCCAATGGCCAGGCCAAAAATaGGCCCAGGCCACGGCATGT | + |
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Preference number: 4 (lower is better) Translates to: FFYNKKPCIDTPRHFYAQWPGQK*AQATAC Trigger: ACATGCCGTGGCCTGGGCTCATTTTTGGCCTGGCCA...TTGGGCATAGAAGTGTCTTGGAGTGTCAATGCATGGCTTCTTGTTATAGAAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR GCA 90 bp | AGGCAGAGAGAGACACTAGAAAATGCATTCCACTCCATAATAGACTCCACTGGTCACCATACTTCGGCCTaGCAGGAAGAAGCCTCCAAC | + |
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Preference number: 4 (lower is better) Translates to: RQRETLENAFHSIIDSTGHHTSA*QEEASN Trigger: GTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGTG...ACCAGTGGAGTCTATTATGGAGTGGAATGCATTTTCTAGTGTCTCTCTCTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | CTACAGAGTGGGTCAAAAGGGGGAAGAACAATGCTAGAGTTGCCGAGTCTACACTATATAGAATCCGGCTaGTCATTCCTGGCATCACCA | + |
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Preference number: 4 (lower is better) Translates to: LQSGSKGGRTMLELPSLHYIESG*SFLASP Trigger: TGGTGATGCCAGGAATGATCAGCCGGATTCTATATA...GTGTAGACTCGGCAACTCTAGCATTGTTCTTCCCCCTTTTGACCCACTCTGTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | CAAGCCAATCATTGTGGCCATGTGCACACATGGGAAAGAGGACCTCAGGCTAATCATAGGCAAACTCAGTaGTCATACGGGAGATTCCAA | + |
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Preference number: 4 (lower is better) Translates to: QANHCGHVHTWERGPQANHRQTQ*SYGRFQ Trigger: TTGGAATCTCCCGTATGATCACTGAGTTTGCCTATG...ATTAGCCTGAGGTCCTCTTTCCCATGTGTGCACATGGCCACAATGATTGGCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR GCA 90 bp | GAGACACTAGAAAATGCATTCCACTCCATAATAGACTCCACTGGTATATTTTGTCTGCGGCTGCTCCTGTaGCTGCCAGCCCCACAAAGT | + |
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Preference number: 4 (lower is better) Translates to: ETLENAFHSIIDSTGIFCLRLLL*LPAPQS Trigger: ACTTTGTGGGGCTGGCAGGCACAGGAGCAGCCGCAG...ACAAAATATACCAGTGGAGTCTATTATGGAGTGGAATGCATTTTCTAGTGTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR GCA 90 bp | AGGCAGAGAGAGACACTAGAAAATGCATTCCACTCCATAATAGACTCCACTGGTCACAAACGGTACAGGTaGACGTCTGGAATGGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: RQRETLENAFHSIIDSTGHKRYR*TSGMGL Trigger: CAAGCCCATTCCAGACGTGCACCTGTACCGTTTGTG...ACCAGTGGAGTCTATTATGGAGTGGAATGCATTTTCTAGTGTCTCTCTCTGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | CAAGCCAATCATTGTGGCCATGTGCACACATGGGAAAGAGGACCTCAGGCTAATTCATGTACTTGTCCATaGAGGCTTCATATCCTCCTA | + |
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Preference number: 4 (lower is better) Translates to: QANHCGHVHTWERGPQANSCTCP*RLHILL Trigger: TAGGAGGATATGAAGCCTTCATGGACAAGTACATGA...ATTAGCCTGAGGTCCTCTTTCCCATGTGTGCACATGGCCACAATGATTGGCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR GCA 90 bp | TTTTCTTTCTTCTATAACAAGAAGCCATGCATTGACACTCCAAGACACTTCTATACCCATGGCAATGCCTaGGGCTGCTCCTGTGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: FSFFYNKKPCIDTPRHFYTHGNA*GCSCAC Trigger: GCAGGCACAGGAGCAGCCGCAGGCATTGCCATGGGT...ATAGAAGTGTCTTGGAGTGTCAATGCATGGCTTCTTGTTATAGAAGAAAGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR GCA 90 bp | CTTACAGGGAACAAGAAAATACCTCAAACAGCTCTCTCCAGATTTTCTTTCTTCGTCCTCCTCCTCTCCTaGATCCAGGTCGATTCGCTC | + |
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Preference number: 4 (lower is better) Translates to: LTGNKKIPQTALSRFSFFVLLLS*IQVDSL Trigger: GAGCGAATCGACCTGGATGCAGGAGAGGAGGAGGAC...GAAGAAAGAAAATCTGGAGAGAGCTGTTTGAGGTATTTTCTTGTTCCCTGTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| 3UTR CAA 72 bp | CTGTCCTATCAAGTAGTGTCAACGTCTAAGACTGTATaGTGTGTCAACATCAGCACCACGAGGCAGAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: LSYQVVSTSKTV*CVNISTTRQRE Trigger: CTCTCTCTGCCTCGTGGTGCTGATGTTGACACACAATACAGTCTTAGACGTTGACACTACTTGATAGGACAG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | GAGACACTAGAAAATGCATTCCACTCCATAATAGACTCCACTGGTATATTTTGTAGTGGACCCCACAGATaGTCTTGGGGCAGTTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: ETLENAFHSIIDSTGIFCSGPHR*SWGSCW Trigger: CCAGCAACTGCCCCAAGATCATCTGTGGGGTCCACT...ACAAAATATACCAGTGGAGTCTATTATGGAGTGGAATGCATTTTCTAGTGTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR GCA 90 bp | GAGACACTAGAAAATGCATTCCACTCCATAATAGACTCCACTGGTATATTTTGTAAGCAGGAAGACAGCTaGAATGGGCGGCCCCAGGTA | + |
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Preference number: 4 (lower is better) Translates to: ETLENAFHSIIDSTGIFCKQEDS*NGRPQV Trigger: TACCTGGGGCCGCCCATTGCAGCTGTCTTCCTGCTT...ACAAAATATACCAGTGGAGTCTATTATGGAGTGGAATGCATTTTCTAGTGTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | AGGACAAGGTTCCTATCCTCAACTTCCGGGTATTCTTCTATTTGTCAAATTGATGCCAGCCCCACAAAGTaGCCACTTCCAATGTTACTG | + |
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Preference number: 4 (lower is better) Translates to: RTRFLSSTSGYSSICQIDASPTK*PLPMLL Trigger: CAGTAACATTGGAAGTGGTCACTTTGTGGGGCTGGC...ATCAATTTGACAAATAGAAGAATACCCGGAAGTTGAGGATAGGAACCTTGTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | TTTTCTTTCTTCTATAACAAGAAGCCATGCATTGACACTCCAAGACACTTCTATAAGACCCCACCAGCATaGTCGCGGTCTGCAGGGTAT | + |
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Preference number: 4 (lower is better) Translates to: FSFFYNKKPCIDTPRHFYKTPPA*SRSAGY Trigger: ATACCCTGCAGACCGCGATCATGCTGGTGGGGTCTT...ATAGAAGTGTCTTGGAGTGTCAATGCATGGCTTCTTGTTATAGAAGAAAGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | GAGACACTAGAAAATGCATTCCACTCCATAATAGACTCCACTGGTATATTTTGTGTAGATGACGATGACTaGGATGTCAGCCGCATTGCG | + |
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Preference number: 4 (lower is better) Translates to: ETLENAFHSIIDSTGIFCVDDDD*DVSRIA Trigger: CGCAATGCGGCTGACATCTCAGTCATCGTCATCTAC...ACAAAATATACCAGTGGAGTCTATTATGGAGTGGAATGCATTTTCTAGTGTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR GCA 90 bp | TACAAGCACCAAGATAGTCCATCTTCCACAGGGAAAGCACACAGTTCAGATAAAGATGAACAACCTTCCTaGAATCATGAGCTCCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: YKHQDSPSSTGKAHSSDKDEQPS*NHELLL Trigger: GAGAAGGAGCTCATGATTGCAGGAAGGTTGTTCATC...TTTATCTGAACTGTGTGCTTTCCCTGTGGAAGATGGACTATCTTGGTGCTTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | AGCTTACAGGGAACAAGAAAATACCTCAAACAGCTCTCTCCAGATTTTCTTTCTTCTGAATATGTGGAATaGGTCAGCCCTCGGTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: SLQGTRKYLKQLSPDFLSSEYVE*VSPRCV Trigger: TACACACCGAGGGCTGACTCATTCCACATATTCAGA...AGAAAGAAAATCTGGAGAGAGCTGTTTGAGGTATTTTCTTGTTCCCTGTAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | AGGACAAGGTTCCTATCCTCAACTTCCGGGTATTCTTCTATTTGTCAAATTGATATCCTCCTACTTCATTaGAAGCAAACCCAGTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: RTRFLSSTSGYSSICQIDILLLH*KQTQSG Trigger: TCCTGACTGGGTTTGCTTTCAATGAAGTAGGAGGAT...ATCAATTTGACAAATAGAAGAATACCCGGAAGTTGAGGATAGGAACCTTGTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | TTTTCTTTCTTCTATAACAAGAAGCCATGCATTGACACTCCAAGACACTTCTATAAGAGCTGCCCACTTTaGGCAGACTGTACAATGGGT | + |
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Preference number: 4 (lower is better) Translates to: FSFFYNKKPCIDTPRHFYKSCPL*ADCTMG Trigger: ACCCATTGTACAGTCTGCTCAAAGTGGGCAGCTCTT...ATAGAAGTGTCTTGGAGTGTCAATGCATGGCTTCTTGTTATAGAAGAAAGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR TCA 90 bp | GAGACACTAGAAAATGCATTCCACTCCATAATAGACTCCACTGGTATATTTTGTAGGCTCCTTGTTCATTaGCTCTCTTGCAGAAAATGG | + |
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Preference number: 4 (lower is better) Translates to: ETLENAFHSIIDSTGIFCRLLVH*LSCRKW Trigger: CCATTTTCTGCAAGAGAGTCAATGAACAAGGAGCCT...ACAAAATATACCAGTGGAGTCTATTATGGAGTGGAATGCATTTTCTAGTGTCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS TCA 90 bp | AGTTGCTGGGCTCCATGCAGCTCCCAGTTCCATAGGCAAACTCAGTaGTCATACGGGAGATTCCAATCAGGAAGCCCAGGATCAGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: SCWAPCSSQFHRQTQ*SYGRFQSGSPGSVP Trigger: GGGGACTGATCCTGGGCTTCCTGATTGGAATCTCCCGTATGATCACTGAGTTTGCCTATGGAACTGGGAGCTGCATGGAGCCCAGCAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR CAA 90 bp | CAAGCCAATCATTGTGGCCATGTGCACACATGGGAAAGAGGACCTCAGGCTAATACCCCACAGATGATCTaGGGGCAGTTGCTGGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: QANHCGHVHTWERGPQANTPQMI*GQLLGS Trigger: GGAGCCCAGCAACTGCCCCAAGATCATCTGTGGGGT...ATTAGCCTGAGGTCCTCTTTCCCATGTGTGCACATGGCCACAATGATTGGCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR CAA 90 bp | CTGGCATGGCAGATGAGTGTGGCACACTGGCTTCAAATGCATAAGTTCACAGCAATGATCTTGGGGCAGTaGCTGGGCTCCATGCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: LAWQMSVAHWLQMHKFTAMILGQ*LGSMQL Trigger: GAGCTGCATGGAGCCCAGCAACTGCCCCAAGATCAT...TGCTGTGAACTTATGCATTTGAAGCCAGTGTGCCACACTCATCTGCCATGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS GCA 90 bp | CGCTCTTCCTTGCTGTTGCGTAGACTCCAACACAAACGGTACAGGTaGACGTCTGGAATGGGCTTGGTGAGGAAGGAGATGATCAAGATG | + |
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Preference number: 5 (lower is better) Translates to: RSSLLLRRLQHKRYR*TSGMGLVRKEMIKM Trigger: CATCTTGATCATCTCCTTCCTCACCAAGCCCATTCCAGACGTGCACCTGTACCGTTTGTGTTGGAGTCTACGCAACAGCAAGGAAGAGCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR CAA 90 bp | CTTGCCACTACAGAGTGGGTCAAAAGGGGGAAGAACAATGCTAGAGTTGCCGAGTCCCCAGAAGGCTCCTaGTTCATTGACTCTCTTGCA | + |
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Preference number: 5 (lower is better) Translates to: LATTEWVKRGKNNARVAESPEGS*FIDSLA Trigger: TGCAAGAGAGTCAATGAACAAGGAGCCTTCTGGGGA...CTCGGCAACTCTAGCATTGTTCTTCCCCCTTTTGACCCACTCTGTAGTGGCAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS TCA 90 bp | AGGCCACGGCATGTCTCCAGTAATGGGGTCTCTGAATATGTGGAATaGGTCAGCCCTCGGTGTGTAGCATTCTTCCTTGGCGGTAAAATT | + |
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Preference number: 5 (lower is better) Translates to: RPRHVSSNGVSEYVE*VSPRCVAFFLGGKI Trigger: AATTTTACCGCCAAGGAAGAATGCTACACACCGAGGGCTGACTCATTCCACATATTCAGAGACCCCATTACTGGAGACATGCCGTGGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR CAA 90 bp | CTACAGAGTGGGTCAAAAGGGGGAAGAACAATGCTAGAGTTGCCGAGTCTACACCTGTGTCTATTTCAATaGTGTCCTTGGAGTCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: LQSGSKGGRTMLELPSLHLCLFQ*CPWSPL Trigger: CAGAGGACTCCAAGGACACAATTGAAATAGACACAG...GTGTAGACTCGGCAACTCTAGCATTGTTCTTCCCCCTTTTGACCCACTCTGTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR CAA 90 bp | CAAGCCAATCATTGTGGCCATGTGCACACATGGGAAAGAGGACCTCAGGCTAATAAGGCTCCTTGTTCATaGACTCTCTTGCAGAAAATG | + |
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Preference number: 5 (lower is better) Translates to: QANHCGHVHTWERGPQANKAPCS*TLLQKM Trigger: CATTTTCTGCAAGAGAGTCAATGAACAAGGAGCCTT...ATTAGCCTGAGGTCCTCTTTCCCATGTGTGCACATGGCCACAATGATTGGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR CAA 90 bp | TTTTCTTTCTTCTATAACAAGAAGCCATGCATTGACACTCCAAGACACTTCTATTATCCTCCTACTTCATaGAAAGCAAACCCAGTCAGG | + |
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Preference number: 5 (lower is better) Translates to: FSFFYNKKPCIDTPRHFYYPPTS*KANPVR Trigger: CCTGACTGGGTTTGCTTTCAATGAAGTAGGAGGATA...ATAGAAGTGTCTTGGAGTGTCAATGCATGGCTTCTTGTTATAGAAGAAAGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS-3UTR CAA 90 bp | AGGACAAGGTTCCTATCCTCAACTTCCGGGTATTCTTCTATTTGTCAAATTGATATAGCTTTCATGTACTaGTCCATGAAGGCTTCATAT | + |
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Preference number: 5 (lower is better) Translates to: RTRFLSSTSGYSSICQIDIAFMY*SMKASY Trigger: ATATGAAGCCTTCATGGACAAGTACATGAAAGCTAT...ATCAATTTGACAAATAGAAGAATACCCGGAAGTTGAGGATAGGAACCTTGTCCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS TCA 72 bp | TCCGCAGATACTCCGGCATCGTCACCACCCCGGCCTTaGTGTAAATCGGGACAAATATCCAGCCCAGCACAA | + |
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Preference number: 6 (lower is better) Translates to: SADTPASSPPRP*CKSGQISSPAQ Trigger: TTGTGCTGGGCTGGATATTTGTCCCGATTTACATCAAGGCCGGGGTGGTGACGATGCCGGAGTATCTGCGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS TCA 72 bp | GCTCCATGCAGCTCCCAGTTCCATAGGCAAACTCAGTaGTCATACGGGAGATTCCAATCAGGAAGCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: APCSSQFHRQTQ*SYGRFQSGSPG Trigger: TCCTGGGCTTCCTGATTGGAATCTCCCGTATGATCACTGAGTTTGCCTATGGAACTGGGAGCTGCATGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS GCA 72 bp | TTGCTGTTGCGTAGACTCCAACACAAACGGTACAGGTaGACGTCTGGAATGGGCTTGGTGAGGAAGGAGATG | + |
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Preference number: 6 (lower is better) Translates to: LLLRRLQHKRYR*TSGMGLVRKEM Trigger: CATCTCCTTCCTCACCAAGCCCATTCCAGACGTGCACCTGTACCGTTTGTGTTGGAGTCTACGCAACAGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS TCA 72 bp | CATGTCTCCAGTAATGGGGTCTCTGAATATGTGGAATaGGTCAGCCCTCGGTGTGTAGCATTCTTCCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: HVSSNGVSEYVE*VSPRCVAFFLG Trigger: GCCAAGGAAGAATGCTACACACCGAGGGCTGACTCATTCCACATATTCAGAGACCCCATTACTGGAGACATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS CAA 90 bp | AGCAGGATGAAAATGGCCAAGTATATATCCAGGCCCAAGGCTAGATaGATGAATATAGCCCCGGAGAAGATGTCTGCAGAGATCTTTGTG | + |
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Preference number: 6 (lower is better) Translates to: SRMKMAKYISRPKAR*MNIAPEKMSAEIFV Trigger: CACAAAGATCTCTGCAGACATCTTCTCCGGGGCTATATTCATCAATCTAGCCTTGGGCCTGGATATATACTTGGCCATTTTCATCCTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS CAA 72 bp | AAAATGGCCAAGTATATATCCAGGCCCAAGGCTAGATaGATGAATATAGCCCCGGAGAAGATGTCTGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: KMAKYISRPKAR*MNIAPEKMSAE Trigger: CTCTGCAGACATCTTCTCCGGGGCTATATTCATCAATCTAGCCTTGGGCCTGGATATATACTTGGCCATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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| CDS CAA 72 bp | CCGTTAGAAACCTTAGTTGGAATAGCTTTCATGTACTaGTCCATGAAGGCTTCATATCCTCCTACTTCATTG | + |
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Preference number: 6 (lower is better) Translates to: PLETLVGIAFMY*SMKASYPPTSL Trigger: CAATGAAGTAGGAGGATATGAAGCCTTCATGGACAAGTACATGAAAGCTATTCCAACTAAGGTTTCTAACGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011178.5 |
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