Pregenerated sensors for SLC50A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027953Ensembl transcript IDs: ENSMUST00000029565.11, ENSMUST00000107460.8, ENSMUST00000130230.2, ENSMUST00000185119.8
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCTGTTTGGTATCCAGTTGGCACTCGGGTGCCTGGGGTCAGGTCTaGAGGAGGCGGTACTTCCTGTCTTGCTCTGGAGGGTACTTGCAG | + |
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Preference number: 1 (lower is better) Translates to: LCLVSSWHSGAWGQV*RRRYFLSCSGGYLQ Trigger: CTGCAAGTACCCTCCAGAGCAAGACAGGAAGTACCGCCTCCTGCAGACCTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR CCA 90 bp | CAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGCCTaGGGTCAGGTCTGCAGGAGGCGGTACTTCCTGTCTTGCTCTGGA | + |
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Preference number: 1 (lower is better) Translates to: QKQELCLVSSWHSGA*GQVCRRRYFLSCSG Trigger: TCCAGAGCAAGACAGGAAGTACCGCCTCCTGCAGACCTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR CCA 90 bp | TCCATGGAACTGGTCACAAGGACCAGCAGAAACAGGAGCTCTGTTTaGTATCCAGTTGGCACTCGGGTGCCTGGGGTCAGGTCTGCAGGA | + |
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Preference number: 1 (lower is better) Translates to: SMELVTRTSRNRSSV*YPVGTRVPGVRSAG Trigger: TCCTGCAGACCTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGTGACCAGTTCCATGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR CCA 90 bp | GTTTCAAAGTCATCTTTTTCTCACAACCTATTGCATCCATGGAACTaGTCACAAGGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAG | + |
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Preference number: 1 (lower is better) Translates to: VSKSSFSHNLLHPWN*SQGPAETGALFGIQ Trigger: CTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGTGACCAGTTCCATGGATGCAATAGGTTGTGAGAAAAAGATGACTTTGAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR CCA 90 bp | CCTTTAGTTTCAAAGTCATCTTTTTCTCACAACCTATTGCATCCATaGAACTGGTCACAAGGACCAGCAGAAACAGGAGCTCTGTTTGGT | + |
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Preference number: 1 (lower is better) Translates to: PLVSKSSFSHNLLHP*NWSQGPAETGALFG Trigger: ACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGTGACCAGTTCCATGGATGCAATAGGTTGTGAGAAAAAGATGACTTTGAAACTAAAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR CAA 90 bp | TGGTCACAAGGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTaGGCACTCGGGTGCCTGGGGTCAGGTCTGCAGGAGGCGGTACTT | + |
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Preference number: 2 (lower is better) Translates to: WSQGPAETGALFGIQ*ALGCLGSGLQEAVL Trigger: AAGTACCGCCTCCTGCAGACCTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGTGACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR CAA 90 bp | CAGGTCTGCAGGAGGCGGTACTTCCTGTCTTGCTCTGGAGGGTACTaGCAGAAAAGCCCGAGGCGGATTAAGCTGGTGAGGATTCCTGGA | + |
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Preference number: 2 (lower is better) Translates to: QVCRRRYFLSCSGGY*QKSPRRIKLVRIPG Trigger: TCCAGGAATCCTCACCAGCTTAATCCGCCTCGGGCTTTTCTGCAAGTACCCTCCAGAGCAAGACAGGAAGTACCGCCTCCTGCAGACCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR CAA 90 bp | ATCCATGGAACTGGTCACAAGGACCAGCAGAAACAGGAGCTCTGTTaGGTATCCAGTTGGCACTCGGGTGCCTGGGGTCAGGTCTGCAGG | + |
|
Preference number: 2 (lower is better) Translates to: IHGTGHKDQQKQELC*VSSWHSGAWGQVCR Trigger: CCTGCAGACCTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGTGACCAGTTCCATGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR-3UTR CCA 90 bp | AGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGCCTGGGGTCAGGGGCCAAATCAGCCAGTaGGGAGAGGTACATGCTGAT | + |
|
Preference number: 2 (lower is better) Translates to: RNRSSVWYPVGTRVPGVRGQISQ*GEVHAD Trigger: ATCAGCATGTACCTCTCCCCACTGGCTGATTTGGCC...CCTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR-3UTR TCA 90 bp | AGGAGGCGGTACTTCCTGTCTTGCTCTGGAGGGTACTTGCAGAAAAGCCCGAGGCCCACAGGTCCTATCTaGTCTAAGGAAAGATCTTTG | + |
|
Preference number: 2 (lower is better) Translates to: RRRYFLSCSGGYLQKSPRPTGPI*SKERSL Trigger: CAAAGATCTTTCCTTAGATCAGATAGGACCTGTGGG...CCTCGGGCTTTTCTGCAAGTACCCTCCAGAGCAAGACAGGAAGTACCGCCTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR-3UTR CCA 90 bp | CCGAGGCGGATTAAGCTGGTGAGGATTCCTGGAAGGTTGGGCACCGTGATGTATAACCTATTGCATCCATaGAACTGGTCACAAGGACCA | + |
|
Preference number: 2 (lower is better) Translates to: PRRIKLVRIPGRLGTVMYNLLHP*NWSQGP Trigger: TGGTCCTTGTGACCAGTTCCATGGATGCAATAGGTT...ATACATCACGGTGCCCAACCTTCCAGGAATCCTCACCAGCTTAATCCGCCTCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR-3UTR TCA 90 bp | GGTGGGGAACAGTTTATTTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAACCCACAGGTCCTATCTaGTCTAAGGAAAGATCTTTG | + |
|
Preference number: 2 (lower is better) Translates to: GGEQFILRHILIPPQPPKPTGPI*SKERSL Trigger: CAAAGATCTTTCCTTAGATCAGATAGGACCTGTGGG...TTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAAATAAACTGTTCCCCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR-3UTR CCA 90 bp | GGAACAGTTTATTTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAATGAGATTGCATCCATGGAACTaGTCACAAGGACCAGCAGAA | + |
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Preference number: 2 (lower is better) Translates to: GTVYFKAHSNTTSASEMRLHPWN*SQGPAE Trigger: TTCTGCTGGTCCTTGTGACCAGTTCCATGGATGCAA...TCTCATTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAAATAAACTGTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR-3UTR CCA 90 bp | TGGGGAACAGTTTATTTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAATGAACCTATTGCATCCATaGAACTGGTCACAAGGACCA | + |
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Preference number: 2 (lower is better) Translates to: WGTVYFKAHSNTTSASEMNLLHP*NWSQGP Trigger: TGGTCCTTGTGACCAGTTCCATGGATGCAATAGGTT...CATTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAAATAAACTGTTCCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR-3UTR TCA 90 bp | TTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAATGAGAAAAGATGATCTCTCTCCTGTAAAAATGTaGTTTCATCCCACAGGTCCT | + |
|
Preference number: 2 (lower is better) Translates to: FKAHSNTTSASEMRKDDLSPVKM*FHPTGP Trigger: AGGACCTGTGGGATGAAATCACATTTTTACAGGAGA...GAGATCATCTTTTCTCATTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR-3UTR TCA 90 bp | GGAACAGTTTATTTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAATGAGATCTCCTGTAAAAATGTaGTTTCATCCCACAGGTCCT | + |
|
Preference number: 2 (lower is better) Translates to: GTVYFKAHSNTTSASEMRSPVKM*FHPTGP Trigger: AGGACCTGTGGGATGAAATCACATTTTTACAGGAGA...TCTCATTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAAATAAACTGTTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR-3UTR TCA 90 bp | TTTAGTTTCAAAGTCATCTTTTTCTCACAACCTATTGCATCCATGGAACTGGTCCCTCAGCCTCCGAAATaGGAAAAGATGATCTCCTGT | + |
|
Preference number: 2 (lower is better) Translates to: FSFKVIFFSQPIASMELVPQPPK*EKMISC Trigger: ACAGGAGATCATCTTTTCTCATTTCGGAGGCTGAGG...GACCAGTTCCATGGATGCAATAGGTTGTGAGAAAAAGATGACTTTGAAACTAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR-3UTR CCA 90 bp | TATTTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAATGAGAAAAGATGATTTGCATCCATGGAACTaGTCACAAGGACCAGCAGAA | + |
|
Preference number: 2 (lower is better) Translates to: YFKAHSNTTSASEMRKDDLHPWN*SQGPAE Trigger: TTCTGCTGGTCCTTGTGACCAGTTCCATGGATGCAA...ATCATCTTTTCTCATTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR GCA 72 bp | TGGGGTCAGGTCTGCAGGAGGCGGTACTTCCTGTCTTaGTCTGGAGGGTACTTGCAGAAAAGCCCGAGGCGG | + |
|
Preference number: 3 (lower is better) Translates to: WGQVCRRRYFLS*SGGYLQKSPRR Trigger: CCGCCTCGGGCTTTTCTGCAAGTACCCTCCAGAGCAAGACAGGAAGTACCGCCTCCTGCAGACCTGACCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR GCA 72 bp | ACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTaGCTGGGGTCAGGTCTGCAGGAGGCGGTACTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: TGALFGIQLALG*LGSGLQEAVLP Trigger: AGGAAGTACCGCCTCCTGCAGACCTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR CCA 72 bp | GAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGCCTaGGGTCAGGTCTGCAGGAGGCGGTACTTCCTGTCT | + |
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Preference number: 3 (lower is better) Translates to: ELCLVSSWHSGA*GQVCRRRYFLS Trigger: AGACAGGAAGTACCGCCTCCTGCAGACCTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR CCA 72 bp | GACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTaGCACTCGGGTGCCTGGGGTCAGGTCTGCAGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: DQQKQELCLVSS*HSGAWGQVCRR Trigger: CCTCCTGCAGACCTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR CCA 72 bp | CTGGTCACAAGGACCAGCAGAAACAGGAGCTCTGTTTaGTATCCAGTTGGCACTCGGGTGCCTGGGGTCAGG | + |
|
Preference number: 3 (lower is better) Translates to: LVTRTSRNRSSV*YPVGTRVPGVR Trigger: CCTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGTGACCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR TCA 72 bp | CGTGGCAATGGTCAGGGAGAAGGAGAGGCGCTGGGTTaGTTTAGTCTGAACGATCTTGGCCAAATCAGCCAG | + |
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Preference number: 3 (lower is better) Translates to: RGNGQGEGEALG*FSLNDLGQISQ Trigger: CTGGCTGATTTGGCCAAGATCGTTCAGACTAAATCAACCCAGCGCCTCTCCTTCTCCCTGACCATTGCCACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR CCA 72 bp | GGTGAGGATTCCTGGAAGGTTGGGCACCGTGATGTATaGGTCTCGGAGGCGAAACCCGTAAATAGACCAAGA | + |
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Preference number: 3 (lower is better) Translates to: GEDSWKVGHRDV*VSEAKPVNRPR Trigger: TCTTGGTCTATTTACGGGTTTCGCCTCCGAGACCCATACATCACGGTGCCCAACCTTCCAGGAATCCTCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR CCA 72 bp | TCAAAGTCATCTTTTTCTCACAACCTATTGCATCCATaGAACTGGTCACAAGGACCAGCAGAAACAGGAGCT | + |
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Preference number: 3 (lower is better) Translates to: SKSSFSHNLLHP*NWSQGPAETGA Trigger: AGCTCCTGTTTCTGCTGGTCCTTGTGACCAGTTCCATGGATGCAATAGGTTGTGAGAAAAAGATGACTTTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR-3UTR CAA 90 bp | GGAACAGTTTATTTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAATGAGATTTTCTCACAACCTATaGCATCCATGGAACTGGTCA | + |
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Preference number: 3 (lower is better) Translates to: GTVYFKAHSNTTSASEMRFSHNL*HPWNWS Trigger: TGACCAGTTCCATGGATGCAATAGGTTGTGAGAAAA...TCTCATTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAAATAAACTGTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR CAA 72 bp | CTGGGGTCAGGTCTGCAGGAGGCGGTACTTCCTGTCTaGCTCTGGAGGGTACTTGCAGAAAAGCCCGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: LGSGLQEAVLPV*LWRVLAEKPEA Trigger: CGCCTCGGGCTTTTCTGCAAGTACCCTCCAGAGCAAGACAGGAAGTACCGCCTCCTGCAGACCTGACCCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| CDS-3UTR TCA 90 bp | GGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGCCTGAAGAGGCCTAGCTGCTaGAGCCGGGCCTCAAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: GPAETGALFGIQLALGCLKRPSC*SRASRS Trigger: GGACCTTGAGGCCCGGCTTCAGCAGCTAGGCCTCTT...CAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029565.11 |
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| CDS-3UTR GCA 90 bp | GGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGCCTGGACAGCCAGCAGGGTTaGCGTCTGCAGGAGCACACC | + |
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Preference number: 4 (lower is better) Translates to: GPAETGALFGIQLALGCLDSQQG*RLQEHT Trigger: GGTGTGCTCCTGCAGACGGCAACCCTGCTGGCTGTC...CAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000185119.8 |
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| 3UTR CAA 72 bp | GGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTaGGCACTCGGGTGCCTGGGGTCAGGTCTGCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: GPAETGALFGIQ*ALGCLGSGLQE Trigger: CTCCTGCAGACCTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| CDS-3UTR TCA 90 bp | ACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGCCTGGGTCCTCTGCATATGCCTaGGGTCCGAGAGGCCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: TSRNRSSVWYPVGTRVPGSSAYA*GPRGQW Trigger: CCACTGGCCTCTCGGACCTCAGGCATATGCAGAGGA...CCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| CDS-3UTR GCA 90 bp | GGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGCCTGAGAAAGGAAAGAGTCTaGCACGCCGCCCGCCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: GPAETGALFGIQLALGCLRKERV*HAARLH Trigger: ATGGAGGCGGGCGGCGTGGCAGACTCTTTCCTTTCT...CAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| 3UTR CAA 72 bp | CCGAGGCGGATTAAGCTGGTGAGGATTCCTGGAAGGTaGGGCACCGTGATGTATGGGTCTCGGAGGCGAAAC | + |
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Preference number: 4 (lower is better) Translates to: PRRIKLVRIPGR*GTVMYGSRRRN Trigger: GTTTCGCCTCCGAGACCCATACATCACGGTGCCCAACCTTCCAGGAATCCTCACCAGCTTAATCCGCCTCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| CDS-3UTR TCA 90 bp | ACAAGGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGTCCTCTGCATATGCCTaGGGTCCGAGAGGCCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: TRTSRNRSSVWYPVGTRVSSAYA*GPRGQW Trigger: CCACTGGCCTCTCGGACCTCAGGCATATGCAGAGGA...CACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| CDS-3UTR CCA 90 bp | GGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGCCTGCGGAGCAAAAGAGCGTaGCAATGGTCAGGGAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: GPAETGALFGIQLALGCLRSKRA*QWSGRR Trigger: CCTTCTCCCTGACCATTGCCACGCTCTTTTGCTCCG...CAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| 3UTR CAA 72 bp | AGGAGGCGGTACTTCCTGTCTTGCTCTGGAGGGTACTaGCAGAAAAGCCCGAGGCGGATTAAGCTGGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: RRRYFLSCSGGY*QKSPRRIKLVR Trigger: CCTCACCAGCTTAATCCGCCTCGGGCTTTTCTGCAAGTACCCTCCAGAGCAAGACAGGAAGTACCGCCTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| 3UTR CAA 72 bp | ACTGGTCACAAGGACCAGCAGAAACAGGAGCTCTGTTaGGTATCCAGTTGGCACTCGGGTGCCTGGGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: TGHKDQQKQELC*VSSWHSGAWGQ Trigger: CTGACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGTGACCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| CDS-3UTR CCA 90 bp | CACAAGGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTAAAAGAGCGTGGCAATaGTCAGGGAGAAGGAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: HKDQQKQELCLVSSWHSGKRAWQ*SGRRRG Trigger: GCCTCTCCTTCTCCCTGACCATTGCCACGCTCTTTT...ACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS-3UTR GCA 90 bp | GGTGGGGAACAGTTTATTTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAAGACAGCCAGCAGGGTTaGCGTCTGCAGGAGCACACC | + |
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Preference number: 4 (lower is better) Translates to: GGEQFILRHILIPPQPPKDSQQG*RLQEHT Trigger: GGTGTGCTCCTGCAGACGGCAACCCTGCTGGCTGTC...TTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAAATAAACTGTTCCCCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000185119.8 |
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| CDS-3UTR TCA 90 bp | TTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAATGAGAAAAGATGATCTCTCCTCTGCATATGCCTaGGGTCCGAGAGGCCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: FKAHSNTTSASEMRKDDLSSAYA*GPRGQW Trigger: CCACTGGCCTCTCGGACCTCAGGCATATGCAGAGGA...GAGATCATCTTTTCTCATTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| CDS-3UTR GCA 90 bp | AGTTTCAAAGTCATCTTTTTCTCACAACCTATTGCATCCATGGAACTGGTCACAAGAAAGGAAAGAGTCTaGCACGCCGCCCGCCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: SFKVIFFSQPIASMELVTRKERV*HAARLH Trigger: ATGGAGGCGGGCGGCGTGGCAGACTCTTTCCTTTCT...TGTGACCAGTTCCATGGATGCAATAGGTTGTGAGAAAAAGATGACTTTGAAACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| CDS-3UTR GCA 90 bp | GTTTCAAAGTCATCTTTTTCTCACAACCTATTGCATCCATGGAACTGGTCACAAAGAAAGGAAAGAGTCTaGCACGCCGCCCGCCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: VSKSSFSHNLLHPWNWSQRKERV*HAARLH Trigger: ATGGAGGCGGGCGGCGTGGCAGACTCTTTCCTTTCT...TTGTGACCAGTTCCATGGATGCAATAGGTTGTGAGAAAAAGATGACTTTGAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| CDS-3UTR TCA 90 bp | CCTTTAGTTTCAAAGTCATCTTTTTCTCACAACCTATTGCATCCATGGAACTGGGGCGGATTAAGCTGGTaGGGATTCCTGGAAGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: PLVSKSSFSHNLLHPWNWGGLSW*GFLEGW Trigger: CCAACCTTCCAGGAATCCTCACCAGCTTAATCCGCC...CCAGTTCCATGGATGCAATAGGTTGTGAGAAAAAGATGACTTTGAAACTAAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS-3UTR GCA 90 bp | TTTAGTTTCAAAGTCATCTTTTTCTCACAACCTATTGCATCCATGGAACTGGTCAGCAGGGTTGCCGTCTaGAGGAGCACACCATGCTTC | + |
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Preference number: 4 (lower is better) Translates to: FSFKVIFFSQPIASMELVSRVAV*RSTPCF Trigger: GAAGCATGGTGTGCTCCTGCAGACGGCAACCCTGCT...GACCAGTTCCATGGATGCAATAGGTTGTGAGAAAAAGATGACTTTGAAACTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029565.11 |
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| CDS-3UTR CCA 90 bp | AGTTTCAAAGTCATCTTTTTCTCACAACCTATTGCATCCATGGAACTGGTCACAGGCCAAATCAGCCAGTaGGGAGAGGTACATGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: SFKVIFFSQPIASMELVTGQISQ*GEVHAD Trigger: ATCAGCATGTACCTCTCCCCACTGGCTGATTTGGCC...TGTGACCAGTTCCATGGATGCAATAGGTTGTGAGAAAAAGATGACTTTGAAACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029565.11 |
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| CDS-3UTR CCA 90 bp | GTTTCAAAGTCATCTTTTTCTCACAACCTATTGCATCCATGGAACTGGTCACAAAAAAGAGCGTGGCAATaGTCAGGGAGAAGGAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: VSKSSFSHNLLHPWNWSQKRAWQ*SGRRRG Trigger: GCCTCTCCTTCTCCCTGACCATTGCCACGCTCTTTT...TTGTGACCAGTTCCATGGATGCAATAGGTTGTGAGAAAAAGATGACTTTGAAAC 44% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS-3UTR CCA 90 bp | TATTTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAATGAGAAAAGATGATCGGAGCAAAAGAGCGTaGCAATGGTCAGGGAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: YFKAHSNTTSASEMRKDDRSKRA*QWSGRR Trigger: CCTTCTCCCTGACCATTGCCACGCTCTTTTGCTCCG...ATCATCTTTTCTCATTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS-3UTR GCA 90 bp | TTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAATGAGAAAAGATGATCTCACTGTAGTGCAGATATaGCAGGATATAAAGAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: FKAHSNTTSASEMRKDDLTVVQI*QDIKSL Trigger: CAGACTCTTTATATCCTGGCATATCTGCACTACAGT...GAGATCATCTTTTCTCATTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS-3UTR GCA 90 bp | CCTTTAGTTTCAAAGTCATCTTTTTCTCACAACCTATTGCATCCATGGAACTGGACTGTAGTGCAGATATaGCAGGATATAAAGAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: PLVSKSSFSHNLLHPWNWTVVQI*QDIKSL Trigger: CAGACTCTTTATATCCTGGCATATCTGCACTACAGT...CCAGTTCCATGGATGCAATAGGTTGTGAGAAAAAGATGACTTTGAAACTAAAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS-3UTR CAA 90 bp | AGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGCCTGGGGTCGGCAGGAACTGGATGTaGTCCACGCTCCGTGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: SRNRSSVWYPVGTRVPGVGRNWM*STLRVL Trigger: GAGGACACGGAGCGTGGACAACATCCAGTTCCTGCC...GACCCCAGGCACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| CDS-3UTR CAA 90 bp | GTCACAAGGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGGCAGGAACTGGATGTaGTCCACGCTCCGTGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: VTRTSRNRSSVWYPVGTRGRNWM*STLRVL Trigger: GAGGACACGGAGCGTGGACAACATCCAGTTCCTGCC...CCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGTGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| CDS-3UTR CAA 90 bp | CACAAGGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGGCAGGAACTGGATGTaGTCCACGCTCCGTGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: HKDQQKQELCLVSSWHSGGRNWM*STLRVL Trigger: GAGGACACGGAGCGTGGACAACATCCAGTTCCTGCC...ACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| CDS-3UTR CAA 90 bp | ACAAGGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGTGCTCTGGAGGGTACTaGCAGAAAAGCCCGAGGCGG | + |
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Preference number: 5 (lower is better) Translates to: TRTSRNRSSVWYPVGTRVCSGGY*QKSPRR Trigger: CCGCCTCGGGCTTTTCTGCAAGTACCCTCCAGAGCA...CACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS GCA 90 bp | AAGCCAAAAGTAGCCATAACCCAGGAGAAGGACAGCCAGCAGGGTTaGCGTCTGCAGGAGCACACCATGCTTCTGAGGACTGTAGTGCAG | + |
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Preference number: 5 (lower is better) Translates to: KPKVAITQEKDSQQG*RLQEHTMLLRTVVQ Trigger: CTGCACTACAGTCCTCAGAAGCATGGTGTGCTCCTGCAGACGGCAACCCTGCTGGCTGTCCTTCTCCTGGGTTATGGCTACTTTTGGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000130230.2 |
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| CDS CCA 90 bp | AGCCAGCTCAGGTTGTTGACATCCGTGGTGAGAAAAGGCAGGAACTaGATGTTGTCCACGCTCCGTGTCCTCTGCATATGCCTGAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: SQLRLLTSVVRKGRN*MLSTLRVLCICLRS Trigger: GGACCTCAGGCATATGCAGAGGACACGGAGCGTGGACAACATCCAGTTCCTGCCTTTTCTCACCACGGATGTCAACAACCTGAGCTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS CCA 90 bp | CAGGAGCACACCATGTTGACATCCGTGGTGAGAAAAGGCAGGAACTaGATGTTGTCCACGCTCCGTGTCCTCTGCATATGCCTGAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: QEHTMLTSVVRKGRN*MLSTLRVLCICLRS Trigger: GGACCTCAGGCATATGCAGAGGACACGGAGCGTGGACAACATCCAGTTCCTGCCTTTTCTCACCACGGATGTCAACATGGTGTGCTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| CDS-3UTR CAA 90 bp | CACAAGGACCAGCAGAAACAGGAGCTCTGTTTGGTATCCAGTTGGCACTCGGGTGCGGTACTTCCTGTCTaGCTCTGGAGGGTACTTGCA | + |
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Preference number: 5 (lower is better) Translates to: HKDQQKQELCLVSSWHSGAVLPV*LWRVLA Trigger: TGCAAGTACCCTCCAGAGCAAGACAGGAAGTACCGC...ACCCGAGTGCCAACTGGATACCAAACAGAGCTCCTGTTTCTGCTGGTCCTTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS GCA 90 bp | AAGCCAAAAGTAGCCATAACCCAGGAGAAGGACAGCCAGCAGGGTTaGCGTCTGCAGGAGCACACCATGTTGACATCCGTGGTGAGAAAA | + |
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Preference number: 5 (lower is better) Translates to: KPKVAITQEKDSQQG*RLQEHTMLTSVVRK Trigger: TTTTCTCACCACGGATGTCAACATGGTGTGCTCCTGCAGACGGCAACCCTGCTGGCTGTCCTTCTCCTGGGTTATGGCTACTTTTGGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| CDS-3UTR CAA 90 bp | GGAACAGTTTATTTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAATGAGATGCTCTGGAGGGTACTaGCAGAAAAGCCCGAGGCGG | + |
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Preference number: 5 (lower is better) Translates to: GTVYFKAHSNTTSASEMRCSGGY*QKSPRR Trigger: CCGCCTCGGGCTTTTCTGCAAGTACCCTCCAGAGCA...TCTCATTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAAATAAACTGTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS-3UTR CAA 90 bp | TTTAAGGCACATTCTAATACCACCTCAGCCTCCGAAATGAGAAAAGATGATCTCGCGGTACTTCCTGTCTaGCTCTGGAGGGTACTTGCA | + |
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Preference number: 5 (lower is better) Translates to: FKAHSNTTSASEMRKDDLAVLPV*LWRVLA Trigger: TGCAAGTACCCTCCAGAGCAAGACAGGAAGTACCGC...GAGATCATCTTTTCTCATTTCGGAGGCTGAGGTGGTATTAGAATGTGCCTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS TCA 72 bp | CTGATGGTAAAGACGCTACAGAAGAGGCCTAGCTGCTaGAGCCGGGCCTCAAGGTCCGGCACCAGAAGCCAA | + |
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Preference number: 6 (lower is better) Translates to: LMVKTLQKRPSC*SRASRSGTRSQ Trigger: TTGGCTTCTGGTGCCGGACCTTGAGGCCCGGCTTCAGCAGCTAGGCCTCTTCTGTAGCGTCTTTACCATCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000130230.2 |
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| CDS GCA 72 bp | AACTGGATGTTGTCCACGCTCCGTGTCCTCTGCATATaGCTGAGGTCCGAGAGGCCAGTGGAGAACATGCCC | + |
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Preference number: 6 (lower is better) Translates to: NWMLSTLRVLCI*LRSERPVENMP Trigger: GGGCATGTTCTCCACTGGCCTCTCGGACCTCAGGCATATGCAGAGGACACGGAGCGTGGACAACATCCAGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| CDS CAA 90 bp | CTCAGGTTGTTGACATCCGTGGTGAGAAAAGGCAGGAACTGGATGTaGTCCACGCTCCGTGTCCTCTGCATATGCCTGAGGTCCGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: LRLLTSVVRKGRNWM*STLRVLCICLRSER Trigger: CCTCTCGGACCTCAGGCATATGCAGAGGACACGGAGCGTGGACAACATCCAGTTCCTGCCTTTTCTCACCACGGATGTCAACAACCTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS CAA 90 bp | GAAGCCAAAAGTAGCCATAACCCAGGAGAAGGACAGCCAGCAGGGTaGCCGTCTGCAGGAGCACACCATGCTTCTGAGGACTGTAGTGCA | + |
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Preference number: 6 (lower is better) Translates to: EAKSSHNPGEGQPAG*PSAGAHHASEDCSA Trigger: TGCACTACAGTCCTCAGAAGCATGGTGTGCTCCTGCAGACGGCAACCCTGCTGGCTGTCCTTCTCCTGGGTTATGGCTACTTTTGGCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000130230.2 |
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| CDS CAA 90 bp | CACACCATGTTGACATCCGTGGTGAGAAAAGGCAGGAACTGGATGTaGTCCACGCTCCGTGTCCTCTGCATATGCCTGAGGTCCGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: HTMLTSVVRKGRNWM*STLRVLCICLRSER Trigger: CCTCTCGGACCTCAGGCATATGCAGAGGACACGGAGCGTGGACAACATCCAGTTCCTGCCTTTTCTCACCACGGATGTCAACATGGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| CDS CAA 90 bp | GAAGCCAAAAGTAGCCATAACCCAGGAGAAGGACAGCCAGCAGGGTaGCCGTCTGCAGGAGCACACCATGTTGACATCCGTGGTGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: EAKSSHNPGEGQPAG*PSAGAHHVDIRGEK Trigger: TTTCTCACCACGGATGTCAACATGGTGTGCTCCTGCAGACGGCAACCCTGCTGGCTGTCCTTCTCCTGGGTTATGGCTACTTTTGGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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| CDS CAA 72 bp | TTGACATCCGTGGTGAGAAAAGGCAGGAACTGGATGTaGTCCACGCTCCGTGTCCTCTGCATATGCCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: LTSVVRKGRNWM*STLRVLCICLR Trigger: CCTCAGGCATATGCAGAGGACACGGAGCGTGGACAACATCCAGTTCCTGCCTTTTCTCACCACGGATGTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 ENSMUST00000185119.8 |
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| CDS GCA 72 bp | GAGCACACCATGCTTCTGAGGACTGTAGTGCAGATATaGCAGGATATAAAGAGTCTGAAGCACGGCCCCCAC | + |
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Preference number: 6 (lower is better) Translates to: EHTMLLRTVVQI*QDIKSLKHGPH Trigger: GTGGGGGCCGTGCTTCAGACTCTTTATATCCTGGCATATCTGCACTACAGTCCTCAGAAGCATGGTGTGCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000130230.2 |
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| CDS CCA 72 bp | AGGTTGTTGACATCCGTGGTGAGAAAAGGCAGGAACTaGATGTTGTCCACGCTCCGTGTCCTCTGCATATGC | + |
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Preference number: 6 (lower is better) Translates to: RLLTSVVRKGRN*MLSTLRVLCIC Trigger: GCATATGCAGAGGACACGGAGCGTGGACAACATCCAGTTCCTGCCTTTTCTCACCACGGATGTCAACAACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029565.11 ENSMUST00000107460.8 |
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| CDS CCA 72 bp | ACCATGTTGACATCCGTGGTGAGAAAAGGCAGGAACTaGATGTTGTCCACGCTCCGTGTCCTCTGCATATGC | + |
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Preference number: 6 (lower is better) Translates to: TMLTSVVRKGRN*MLSTLRVLCIC Trigger: GCATATGCAGAGGACACGGAGCGTGGACAACATCCAGTTCCTGCCTTTTCTCACCACGGATGTCAACATGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185119.8 |
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