RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC4A8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023032

Ensembl transcript IDs: ENSMUST00000023776.13, ENSMUST00000161564.2, ENSMUST00000162049.2

Found 431 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAGGCAGCGGGAGGCGGCCCCACCATGACCCGACTGGCGCCTGGCTaGTGGTATGTGGGTAGCTGGATGTCCTCCAAACGCACACCGGGA +
Preference number: 1 (lower is better)
Translates to: EAAGGGPTMTRLAPG*WYVGSWMSSKRTPG
Trigger: TCCCGGTGTGCGTTTGGAGGACATCCAGCTACCCACATACCAGCAGCCAGGCGCCAGTCGGGTCATGGTGGGGCCGCCTCCCGCTGCCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
3UTR GCA 90 bp GAGCTGCAGTGGGCAAGTGAGCTTCCTGGAGCCAGCCTGCAGCTCTaGTTGGCTGTGATGGGTGGGTGTGCCCTGGAGCCTGCAGCTCTG +
Preference number: 1 (lower is better)
Translates to: ELQWASELPGASLQL*LAVMGGCALEPAAL
Trigger: CAGAGCTGCAGGCTCCAGGGCACACCCACCCATCACAGCCAAGCAGAGCTGCAGGCTGGCTCCAGGAAGCTCACTTGCCCACTGCAGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp AGAGATGACCAGTGCAAACATGGGCATGAGGCTCCACAAGTGCATTaGTCAGGGCGGGCGAGAGCAGCCTCCACCCTCCAGCCCAGGGCA +
Preference number: 1 (lower is better)
Translates to: RDDQCKHGHEAPQVH*SGRARAASTLQPRA
Trigger: TGCCCTGGGCTGGAGGGTGGAGGCTGCTCTCGCCCGCCCTGAGCAATGCACTTGTGGAGCCTCATGCCCATGTTTGCACTGGTCATCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp GCAGATGACCCCAGGCCAGAGGCAGCTCACTGTGGTGGTTGCTGTTaGTGCCTGGATGGTGGAGCTCAGGCAGCAGACCTGCTACTGTGT +
Preference number: 1 (lower is better)
Translates to: ADDPRPEAAHCGGCC*CLDGGAQAADLLLC
Trigger: ACACAGTAGCAGGTCTGCTGCCTGAGCTCCACCATCCAGGCATCAACAGCAACCACCACAGTGAGCTGCCTCTGGCCTGGGGTCATCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp CCCACCATGACCCGACTGGCGCCTGGCTGCTGGTATGTGGGTAGCTaGATGTCCTCCAAACGCACACCGGGAGTGACTGAATGCTTCCAT +
Preference number: 1 (lower is better)
Translates to: PTMTRLAPGCWYVGS*MSSKRTPGVTECFH
Trigger: ATGGAAGCATTCAGTCACTCCCGGTGTGCGTTTGGAGGACATCCAGCTACCCACATACCAGCAGCCAGGCGCCAGTCGGGTCATGGTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
3UTR GCA 90 bp GATGCCTGGATGGTGGAGCTCAGGCAGCAGACCTGCTACTGTGTCTaGCTGTCCAACATCCCCTTCCCAGGCAGAAAGGAAACCAAGGCA +
Preference number: 1 (lower is better)
Translates to: DAWMVELRQQTCYCV*LSNIPFPGRKETKA
Trigger: TGCCTTGGTTTCCTTTCTGCCTGGGAAGGGGATGTTGGACAGGCAGACACAGTAGCAGGTCTGCTGCCTGAGCTCCACCATCCAGGCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp GTGGTTGCTGTTGATGCCTGGATGGTGGAGCTCAGGCAGCAGACCTaGTACTGTGTCTGCCTGTCCAACATCCCCTTCCCAGGCAGAAAG +
Preference number: 1 (lower is better)
Translates to: VVAVDAWMVELRQQT*YCVCLSNIPFPGRK
Trigger: CTTTCTGCCTGGGAAGGGGATGTTGGACAGGCAGACACAGTAGCAGGTCTGCTGCCTGAGCTCCACCATCCAGGCATCAACAGCAACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp CTGCTCTCATGCTGTCCCCGCATCTTCCAAGGACTCACAACGTTATaGCCACTGCTTCTGGAGGTGATGCAGATGACCCCAGGCCAGAGG +
Preference number: 1 (lower is better)
Translates to: LLSCCPRIFQGLTTL*PLLLEVMQMTPGQR
Trigger: CCTCTGGCCTGGGGTCATCTGCATCACCTCCAGAAGCAGTGGGCATAACGTTGTGAGTCCTTGGAAGATGCGGGGACAGCATGAGAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp ACCCATCAGTCTATGGGGAAGGGCTCTGACCGACCCATCAGTCTATaGGGAAGGACTCTGACCGACCCATCAGTCTATGGGGAAGGGCTC +
Preference number: 1 (lower is better)
Translates to: THQSMGKGSDRPISL*GRTLTDPSVYGEGL
Trigger: GAGCCCTTCCCCATAGACTGATGGGTCGGTCAGAGTCCTTCCCCATAGACTGATGGGTCGGTCAGAGCCCTTCCCCATAGACTGATGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp CTCTGCCACTACCCCAGGCTATCGTTCGGAAGAGGGAATCCTCTGTaGCAGAATGGACTCGTGTGGCTTACCAGGCCAGCAGAGTATCAG +
Preference number: 1 (lower is better)
Translates to: LCHYPRLSFGRGNPL*QNGLVWLTRPAEYQ
Trigger: CTGATACTCTGCTGGCCTGGTAAGCCACACGAGTCCATTCTGTCACAGAGGATTCCCTCTTCCGAACGATAGCCTGGGGTAGTGGCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp GTCCGCCTAAGAGAGACCAAGGGCAAAGCCAGGTATGGTTGTGCATaGTTGACCCAGCGGCTGGGAGGCAAGAAAGTTACAGCAAGGTCA +
Preference number: 1 (lower is better)
Translates to: VRLRETKGKARYGCA*LTQRLGGKKVTARS
Trigger: TGACCTTGCTGTAACTTTCTTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACCATACCTGGCTTTGCCCTTGGTCTCTCTTAGGCGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp CTGAGTCCGCCTAAGAGAGACCAAGGGCAAAGCCAGGTATGGTTGTaGATGCTTGACCCAGCGGCTGGGAGGCAAGAAAGTTACAGCAAG +
Preference number: 1 (lower is better)
Translates to: LSPPKRDQGQSQVWL*MLDPAAGRQESYSK
Trigger: CTTGCTGTAACTTTCTTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACCATACCTGGCTTTGCCCTTGGTCTCTCTTAGGCGGACTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp AGAGCCTCTTCAGCCAGGAGAGGAAGAGAGCTCACTGTGTGTGTGTaGTCTCTGGACAGAGACTGTCCCAGCTCACTAGTCACAGTCTGG +
Preference number: 1 (lower is better)
Translates to: RASSARRGRELTVCV*SLDRDCPSSLVTVW
Trigger: CCAGACTGTGACTAGTGAGCTGGGACAGTCTCTGTCCAGAGACCACACACACACAGTGAGCTCTCTTCCTCTCCTGGCTGAAGAGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp CCTGTATCAATTGTCAAATATCTTGCATCAATATGGCAGTGGTCCTaGCAGGTAGGGAGGAACGGGCAACACGGGGTGGCCCCCGACACC +
Preference number: 1 (lower is better)
Translates to: PVSIVKYLASIWQWS*QVGRNGQHGVAPDT
Trigger: GGTGTCGGGGGCCACCCCGTGTTGCCCGTTCCTCCCTACCTGTCAGGACCACTGCCATATTGATGCAAGATATTTGACAATTGATACAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp TCCCTGTTGCTCAGGAAACCCTGCTTAGTGGAAAACTCTATCCTCTaGTCCTCAGGGTGGGTTAGCTCTGGAGTGGGGGACGCTGTTCCT +
Preference number: 1 (lower is better)
Translates to: SLLLRKPCLVENSIL*SSGWVSSGVGDAVP
Trigger: AGGAACAGCGTCCCCCACTCCAGAGCTAACCCACCCTGAGGATCAGAGGATAGAGTTTTCCACTAAGCAGGGTTTCCTGAGCAACAGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp GCTTCCCCTAGGCCTTTCCTGACATCAGCTAAACTCCTGCTCTCATaGTGTCCCCGCATCTTCCAAGGACTCACAACGTTATGCCCACTG +
Preference number: 1 (lower is better)
Translates to: ASPRPFLTSAKLLLS*CPRIFQGLTTLCPL
Trigger: CAGTGGGCATAACGTTGTGAGTCCTTGGAAGATGCGGGGACAGCATGAGAGCAGGAGTTTAGCTGATGTCAGGAAAGGCCTAGGGGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp ACAGGAAAGCTAAGACCTGATGTGGCTGATCTACCCATCAGTCTATaGGGAAGGGCTCTGACCGACCCATCAGTCTATGGGGAAGGACTC +
Preference number: 1 (lower is better)
Translates to: TGKLRPDVADLPISL*GRALTDPSVYGEGL
Trigger: GAGTCCTTCCCCATAGACTGATGGGTCGGTCAGAGCCCTTCCCCATAGACTGATGGGTAGATCAGCCACATCAGGTCTTAGCTTTCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp GTCCTCACCATTATGTCTCTCAAGTGCACTGAGGCCAGGGCAGGGTaGAGCAGTCATCAGTTTCCCTACACAGAAGGTGGCAGGAAAAAC +
Preference number: 1 (lower is better)
Translates to: VLTIMSLKCTEARAG*SSHQFPYTEGGRKN
Trigger: GTTTTTCCTGCCACCTTCTGTGTAGGGAAACTGATGACTGCTTCACCCTGCCCTGGCCTCAGTGCACTTGAGAGACATAATGGTGAGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp ACACAGCTATTTGTAACTCCAGCTCCAGGAGGATCGGATTCCTTCTaGTCTCCTGAAGCATGGGGGACATGTGGTGCAAAGGCCTGTGTG +
Preference number: 1 (lower is better)
Translates to: TQLFVTPAPGGSDSF*SPEAWGTCGAKACV
Trigger: CACACAGGCCTTTGCACCACATGTCCCCCATGCTTCAGGAGATCAGAAGGAATCCGATCCTCCTGGAGCTGGAGTTACAAATAGCTGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp CTTGAATGTCCACTGATTTCTAGGAAACCCACCTGTTGCAGTATGTaGTACCTGAGAGCAAGCCAGGGTGGCTGCTCAGATGGAACGCAC +
Preference number: 1 (lower is better)
Translates to: LECPLISRKPTCCSM*YLRASQGGCSDGTH
Trigger: GTGCGTTCCATCTGAGCAGCCACCCTGGCTTGCTCTCAGGTAGCACATACTGCAACAGGTGGGTTTCCTAGAAATCAGTGGACATTCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp GACTGTGAGCTGTTCCAGTCAAGCCATAACACGCAGACTAAAACCTaGACTCAGCACTGGAGATCTAACACCTCTGCAGGCAGTGCTGCT +
Preference number: 1 (lower is better)
Translates to: DCELFQSSHNTQTKT*TQHWRSNTSAGSAA
Trigger: AGCAGCACTGCCTGCAGAGGTGTTAGATCTCCAGTGCTGAGTGCAGGTTTTAGTCTGCGTGTTATGGCTTGACTGGAACAGCTCACAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp CTACCCCAGGCTATCGTTCGGAAGAGGGAATCCTCTGTGACAGAATaGACTCGTGTGGCTTACCAGGCCAGCAGAGTATCAGAGAAAATG +
Preference number: 1 (lower is better)
Translates to: LPQAIVRKRESSVTE*TRVAYQASRVSEKM
Trigger: CATTTTCTCTGATACTCTGCTGGCCTGGTAAGCCACACGAGTCCATTCTGTCACAGAGGATTCCCTCTTCCGAACGATAGCCTGGGGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp ACACAGGAGACAGTGTGTCTGCTACTCACTACAACCCAGGACAAGTaGAGAGGCAGGACAGACACTGCACCTACTACACAGGATACAAGG +
Preference number: 1 (lower is better)
Translates to: TQETVCLLLTTTQDK*RGRTDTAPTTQDTR
Trigger: CCTTGTATCCTGTGTAGTAGGTGCAGTGTCTGTCCTGCCTCTCCACTTGTCCTGGGTTGTAGTGAGTAGCAGACACACTGTCTCCTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp TGGATGATGATGGTTCTCCCGACTAAGGCAGCTAAGGGACATCCATaGGCACTCGGGTCTCTCCAGGGTGTTATAACAATGTCACCACGA +
Preference number: 1 (lower is better)
Translates to: WMMMVLPTKAAKGHP*ALGSLQGVITMSPR
Trigger: TCGTGGTGACATTGTTATAACACCCTGGAGAGACCCGAGTGCTCATGGATGTCCCTTAGCTGCCTTAGTCGGGAGAACCATCATCATCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp ACTAGATGTTTCAGCGAGTCTGAGGGGGAGCAAACTGTGATCGAATaGTGTAGAGCCTCTTCAGCCAGGAGAGGAAGAGAGCTCACTGTG +
Preference number: 1 (lower is better)
Translates to: TRCFSESEGEQTVIE*CRASSARRGRELTV
Trigger: CACAGTGAGCTCTCTTCCTCTCCTGGCTGAAGAGGCTCTACATCATTCGATCACAGTTTGCTCCCCCTCAGACTCGCTGAAACATCTAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp AGAGAAGGACTAGATGTTTCAGCGAGTCTGAGGGGGAGCAAACTGTaGTCGAATGATGTAGAGCCTCTTCAGCCAGGAGAGGAAGAGAGC +
Preference number: 1 (lower is better)
Translates to: REGLDVSASLRGSKL*SNDVEPLQPGEEES
Trigger: GCTCTCTTCCTCTCCTGGCTGAAGAGGCTCTACATCATTCGATCACAGTTTGCTCCCCCTCAGACTCGCTGAAACATCTAGTCCTTCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp GAACTTGTCAACCAAAAGAAACCCATGATTAGGAAGTCACATGGCTaGTGGCGGTTTGGGTCCACCGAGTGGATGATGATGGTTCTCCCG +
Preference number: 1 (lower is better)
Translates to: ELVNQKKPMIRKSHG*WRFGSTEWMMMVLP
Trigger: CGGGAGAACCATCATCATCCACTCGGTGGACCCAAACCGCCATCAGCCATGTGACTTCCTAATCATGGGTTTCTTTTGGTTGACAAGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp ATTTGTAACTCCAGCTCCAGGAGGATCGGATTCCTTCTGATCTCCTaGAGCATGGGGGACATGTGGTGCAAAGGCCTGTGTGAAGGTAAA +
Preference number: 1 (lower is better)
Translates to: ICNSSSRRIGFLLIS*SMGDMWCKGLCEGK
Trigger: TTTACCTTCACACAGGCCTTTGCACCACATGTCCCCCATGCTTCAGGAGATCAGAAGGAATCCGATCCTCCTGGAGCTGGAGTTACAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp TGCTGTGCCTTCTCATGTTTGTCACTGCTATATCCCTCATGTACTTaGCATAGTGAGACACTCACTGCCTCCGTAGCCTGGAGTGACCAC +
Preference number: 1 (lower is better)
Translates to: CCAFSCLSLLYPSCT*HSETLTASVAWSDH
Trigger: GTGGTCACTCCAGGCTACGGAGGCAGTGAGTGTCTCACTATGTCAAGTACATGAGGGATATAGCAGTGACAAACATGAGAAGGCACAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp GGCAAGAAAGTTACAGCAAGGTCAAGGCTAGCTTGCTCTACACAGTaGGACCCTGCCTTGAAAAACCAAGGCTGTTGGAGGCAGATACCA +
Preference number: 1 (lower is better)
Translates to: GKKVTARSRLACSTQ*DPALKNQGCWRQIP
Trigger: TGGTATCTGCCTCCAACAGCCTTGGTTTTTCAAGGCAGGGTCTCACTGTGTAGAGCAAGCTAGCCTTGACCTTGCTGTAACTTTCTTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp GCTCTGTGTGGCTCGTGTCTGTCCTGTATCAATTGTCAAATATCTTaGATCAATATGGCAGTGGTCCTGACAGGTAGGGAGGAACGGGCA +
Preference number: 1 (lower is better)
Translates to: ALCGSCLSCINCQIS*INMAVVLTGREERA
Trigger: TGCCCGTTCCTCCCTACCTGTCAGGACCACTGCCATATTGATGCAAGATATTTGACAATTGATACAGGACAGACACGAGCCACACAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp AAAGTCCGGAGCCTCCTGACAAAGCTTCCCAAGTTGCATGTGTTATaGAACCAAACACACTTGGCACTTGCACATTCCGTCTCTCCAGCT +
Preference number: 1 (lower is better)
Translates to: KVRSLLTKLPKLHVL*NQTHLALAHSVSPA
Trigger: AGCTGGAGAGACGGAATGTGCAAGTGCCAAGTGTGTTTGGTTGCATAACACATGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp TGGCTTTTACACCTGAGCCAGAACTTGTCAACCAAAAGAAACCCATaGTTAGGAAGTCACATGGCTGATGGCGGTTTGGGTCCACCGAGT +
Preference number: 1 (lower is better)
Translates to: WLLHLSQNLSTKRNP*LGSHMADGGLGPPS
Trigger: ACTCGGTGGACCCAAACCGCCATCAGCCATGTGACTTCCTAATCATGGGTTTCTTTTGGTTGACAAGTTCTGGCTCAGGTGTAAAAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp GCTTCCCAAGTTGCATGTGTTATGCAACCAAACACACTTGGCACTTaGACATTCCGTCTCTCCAGCTCTTCACCTTTCTCTACAGCAACC +
Preference number: 1 (lower is better)
Translates to: ASQVACVMQPNTLGT*TFRLSSSSPFSTAT
Trigger: GGTTGCTGTAGAGAAAGGTGAAGAGCTGGAGAGACGGAATGTGCAAGTGCCAAGTGTGTTTGGTTGCATAACACATGCAACTTGGGAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp TCTGACCGACCCATCAGTCTATGGGGAAGGGCTCTTCTACAACTGTaGAGTGCTCAGATTAATATTCATGCAATCCTACAGGACAGGCAG +
Preference number: 1 (lower is better)
Translates to: SDRPISLWGRALLQL*SAQINIHAILQDRQ
Trigger: CTGCCTGTCCTGTAGGATTGCATGAATATTAATCTGAGCACTGCACAGTTGTAGAAGAGCCCTTCCCCATAGACTGATGGGTCGGTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp AGTTACAGCAAGGTCAAGGCTAGCTTGCTCTACACAGTGAGACCCTaGCTTGAAAAACCAAGGCTGTTGGAGGCAGATACCAAGAGTCAT +
Preference number: 1 (lower is better)
Translates to: SYSKVKASLLYTVRP*LEKPRLLEADTKSH
Trigger: ATGACTCTTGGTATCTGCCTCCAACAGCCTTGGTTTTTCAAGGCAGGGTCTCACTGTGTAGAGCAAGCTAGCCTTGACCTTGCTGTAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp GATGAGGCAAGGCTTCTGGCCAAGGCATTTAATAATAAGGAGTCTTaGAGTGGTCATTCCTGGAGCAGGGGCCGAGAGGAAAAACTGAAT +
Preference number: 1 (lower is better)
Translates to: DEARLLAKAFNNKES*SGHSWSRGREEKLN
Trigger: ATTCAGTTTTTCCTCTCGGCCCCTGCTCCAGGAATGACCACTCCAAGACTCCTTATTATTAAATGCCTTGGCCAGAAGCCTTGCCTCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp ACCCATCAGTCTATGGGGAAGGACTCTGACCGACCCATCAGTCTATaGGGAAGGGCTCTTCTACAACTGTGCAGTGCTCAGATTAATATT +
Preference number: 1 (lower is better)
Translates to: THQSMGKDSDRPISL*GRALLQLCSAQINI
Trigger: AATATTAATCTGAGCACTGCACAGTTGTAGAAGAGCCCTTCCCCATAGACTGATGGGTCGGTCAGAGTCCTTCCCCATAGACTGATGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp TCCTATCTAGTGTCAAGGAGTGAAACTGGGAGAGGGAGCAAAGGGTaGGAAAATAACCCACAAAGTAGCAAAGACCAGCTACACCCAGGT +
Preference number: 1 (lower is better)
Translates to: SYLVSRSETGRGSKG*ENNPQSSKDQLHPG
Trigger: ACCTGGGTGTAGCTGGTCTTTGCTACTTTGTGGGTTATTTTCTCACCCTTTGCTCCCTCTCCCAGTTTCACTCCTTGACACTAGATAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp AGGAGACACAGGAAGAATTTTGGTTTCTTTCACAAAAGGAGAGGTTaGACACTCAGGCTGGTGCCTCGCACTGTTGCACAAGTGAAACCA +
Preference number: 1 (lower is better)
Translates to: RRHRKNFGFFHKRRG*TLRLVPRTVAQVKP
Trigger: TGGTTTCACTTGTGCAACAGTGCGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTCTTCCTGTGTCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp CCATTCCCACTGAGCACAGAACCTAAGACAATTTATGCCTGTGAATaGGAAGACGGCATTCCTCTCATGCACTCCAAACCGCATTACTTC +
Preference number: 1 (lower is better)
Translates to: PFPLSTEPKTIYACE*EDGIPLMHSKPHYF
Trigger: GAAGTAATGCGGTTTGGAGTGCATGAGAGGAATGCCGTCTTCTCATTCACAGGCATAAATTGTCTTAGGTTCTGTGCTCAGTGGGAATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp GCCAAGCTAGAGCTAAAAATCTCTGACCTCAAAATACCCACCCAGTaGGTTAACTGGGAGAAAGACAGTACTTTGCAGCAGAAGAGTGAA +
Preference number: 1 (lower is better)
Translates to: AKLELKISDLKIPTQ*VNWEKDSTLQQKSE
Trigger: TTCACTCTTCTGCTGCAAAGTACTGTCTTTCTCCCAGTTAACGCACTGGGTGGGTATTTTGAGGTCAGAGATTTTTAGCTCTAGCTTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp TCCATCACCGACAATGAGAAACCGCAACTGTCTTTTGGAGAGAGATaGTTCACTTTCCCTCTATCGGGAAGACAGGTTTTCATGGTTAAG +
Preference number: 1 (lower is better)
Translates to: SITDNEKPQLSFGER*FTFPLSGRQVFMVK
Trigger: CTTAACCATGAAAACCTGTCTTCCCGATAGAGGGAAAGTGAACCATCTCTCTCCAAAAGACAGTTGCGGTTTCTCATTGTCGGTGATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp TTTGGGTACAAACGAGCTGAAGGAGAAAACAAAGTTGTTGGAGCTTaGCTTGCTTCAGCCACTCAGTGTAGGATTTTCCCATCATTCTCT +
Preference number: 1 (lower is better)
Translates to: FGYKRAEGENKVVGA*LASATQCRIFPSFS
Trigger: AGAGAATGATGGGAAAATCCTACACTGAGTGGCTGAAGCAAGGCAAGCTCCAACAACTTTGTTTTCTCCTTCAGCTCGTTTGTACCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp TTAGGACCGAGCAGGAGAGGTCTCCTCAACACCTTGGCACTAACCTaGACACTCAGTTCCTTGAAAATGTCTGTTTATAATTTCCTGATA +
Preference number: 1 (lower is better)
Translates to: LGPSRRGLLNTLALT*TLSSLKMSVYNFLI
Trigger: TATCAGGAAATTATAAACAGACATTTTCAAGGAACTGAGTGTTCAGGTTAGTGCCAAGGTGTTGAGGAGACCTCTCCTGCTCGGTCCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp TCAAAATACCCACCCAGTGCGTTAACTGGGAGAAAGACAGTACTTTaGAGCAGAAGAGTGAATCAGTCATTTCTAGAGGCAATGGTTTTC +
Preference number: 1 (lower is better)
Translates to: SKYPPSALTGRKTVL*SRRVNQSFLEAMVF
Trigger: GAAAACCATTGCCTCTAGAAATGACTGATTCACTCTTCTGCTGCAAAGTACTGTCTTTCTCCCAGTTAACGCACTGGGTGGGTATTTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp GGATGGGTGGTTGTTGGTTGTTTGGGAGTTGTGTGTGGTTGGTTGTaGTTTCTTCGTAGTGTTCAAAGAAGAAAGGAATTTAGATACAGG +
Preference number: 1 (lower is better)
Translates to: GWVVVGCLGVVCGWL*FLRSVQRRKEFRYR
Trigger: CCTGTATCTAAATTCCTTTCTTCTTTGAACACTACGAAGAAACCACAACCAACCACACACAACTCCCAAACAACCAACAACCACCCATCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp GAGCTAAAAATCTCTGACCTCAAAATACCCACCCAGTGCGTTAACTaGGAGAAAGACAGTACTTTGCAGCAGAAGAGTGAATCAGTCATT +
Preference number: 1 (lower is better)
Translates to: ELKISDLKIPTQCVN*EKDSTLQQKSESVI
Trigger: AATGACTGATTCACTCTTCTGCTGCAAAGTACTGTCTTTCTCCCAGTTAACGCACTGGGTGGGTATTTTGAGGTCAGAGATTTTTAGCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 90 bp CACCTCATTTATAAAGATTATACAGGGCTTCTGAGAAGCCTTCACTaGTTACAAAGATTAGTCTCAGCTGTGAAGGAAGCCGTACCAGAT +
Preference number: 1 (lower is better)
Translates to: HLIYKDYTGLLRSLH*LQRLVSAVKEAVPD
Trigger: ATCTGGTACGGCTTCCTTCACAGCTGAGACTAATCTTTGTAATCAGTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp GAGTCATTTTTATCTACAGTAGAAAGTTTGCCTCTATTTGGCCTCTaGACGTGTTTTTCTGTTTACGGTGAATGGAGATCAATACAGGTG +
Preference number: 1 (lower is better)
Translates to: ESFLSTVESLPLFGL*TCFSVYGEWRSIQV
Trigger: CACCTGTATTGATCTCCATTCACCGTAAACAGAAAAACACGTCCAGAGGCCAAATAGAGGCAAACTTTCTACTGTAGATAAAAATGACTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 90 bp ATACAAGAACAGGTTCAATCACATAATATTACTACTGAACAATGTTaGTTGGTGGCTTTAAAACTTGGGACAAATTTGAGGGGCCCAGGA +
Preference number: 1 (lower is better)
Translates to: IQEQVQSHNITTEQC*LVALKLGTNLRGPG
Trigger: TCCTGGGCCCCTCAAATTTGTCCCAAGTTTTAAAGCCACCAAGCAACATTGTTCAGTAGTAATATTATGTGATTGAACCTGTTCTTGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 90 bp TTTCTAGGAATCGGAAATTTATCTCAGATAAAACAAAGTGTGCAATaGGTGAAATGTGTGGGACCAGAAGGTCTAACAGGAAAGCTAAGA +
Preference number: 1 (lower is better)
Translates to: FLGIGNLSQIKQSVQ*VKCVGPEGLTGKLR
Trigger: TCTTAGCTTTCCTGTTAGACCTTCTGGTCCCACACATTTCACCCATTGCACACTTTGTTTTATCTGAGATAAATTTCCGATTCCTAGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp GCTCAGGGCGGGCGAGAGCAGCCTCCACCCTCCAGCCCAGGGCATAGCTCACAGAGAGAATGCAAGCAGTaGGAAAAGACTCGAGTTCCA +
Preference number: 2 (lower is better)
Translates to: AQGGREQPPPSSPGHSSQRECKQ*EKTRVP
Trigger: TGGAACTCGAGTCTTTTCTCACTGCTTGCATTCTCT...CTGTGAGCTATGCCCTGGGCTGGAGGGTGGAGGCTGCTCTCGCCCGCCCTGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp TGGGGCTGGGAGTGGGAAAGTCCGGAGCCTCCTGACAAAGCTTCCCAAGTTGCAGTCTCTCAAGTGCACTaGGGCCAGGGCAGGGTGAAG +
Preference number: 2 (lower is better)
Translates to: WGWEWESPEPPDKASQVAVSQVH*GQGRVK
Trigger: CTTCACCCTGCCCTGGCCTCAGTGCACTTGAGAGAC...TGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTTCCCACTCCCAGCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR GCA 90 bp GCAGGCAGAGAGGAGGGCTCAGAGACACACCAAGTCACCTGCCCCGGGGCCTCATCCCAGAGACAAAGCTaGTCCAGTAGAGAGAACAGG +
Preference number: 2 (lower is better)
Translates to: AGREEGSETHQVTCPGASSQRQS*SSRENR
Trigger: CCTGTTCTCTCTACTGGAGCAGCTTTGTCTCTGGGA...TGAGGCCCCGGGGCAGGTGACTTGGTGTGTCTCTGAGCCCTCCTCTCTGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp GGGATGCTTCTTGCTACTGCTGTGCCTTCTCATGTTTGTCACTGCTATATCCCTGAGGCGGCCCCACCATaGCCCGACTGGCGCCTGGCT +
Preference number: 2 (lower is better)
Translates to: GMLLATAVPSHVCHCYIPEAAPP*PDWRLA
Trigger: AGCCAGGCGCCAGTCGGGTCATGGTGGGGCCGCCTC...AGGGATATAGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp GGTTGTGCATGCTTGACCCAGCGGCTGGGAGGCAAGAAAGTTACAGCAAGGTCAGAGGCCAGGGCAGGGTaGAGCAGTCATCAGTTTCCC +
Preference number: 2 (lower is better)
Translates to: GCACLTQRLGGKKVTARSEARAG*SSHQFP
Trigger: GGGAAACTGATGACTGCTTCACCCTGCCCTGGCCTC...TGACCTTGCTGTAACTTTCTTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR GCA 90 bp GGTTGTGCATGCTTGACCCAGCGGCTGGGAGGCAAGAAAGTTACAGCAAGGTCAAGTGATGGGTGGGTGTaGCCTGGAGCCTGCAGCTCT +
Preference number: 2 (lower is better)
Translates to: GCACLTQRLGGKKVTARSSDGWV*PGACSS
Trigger: AGAGCTGCAGGCTCCAGGGCACACCCACCCATCACT...TGACCTTGCTGTAACTTTCTTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp AATCGAGAACAGAGTGTGGCCCTTTCTCATAGACTGGCACAGGTGAGGGCGCCACGAGTTCCAGAAGTGTaGGGAGGGCCAGGAAGGCAT +
Preference number: 2 (lower is better)
Translates to: NREQSVALSHRLAQVRAPRVPEV*GGPGRH
Trigger: ATGCCTTCCTGGCCCTCCTCACACTTCTGGAACTCG...TGGCGCCCTCACCTGTGCCAGTCTATGAGAAAGGGCCACACTCTGTTCTCGATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR GCA 90 bp GACACTGCACCTACTACACAGGATACAAGGAGAACCCCTGCCTCCCCACTAAGGCTCAGGCAGCAGACCTaGTACTGTGTCTGCCTGTCC +
Preference number: 2 (lower is better)
Translates to: DTAPTTQDTRRTPASPLRLRQQT*YCVCLS
Trigger: GGACAGGCAGACACAGTAGCAGGTCTGCTGCCTGAG...CCTTAGTGGGGAGGCAGGGGTTCTCCTTGTATCCTGTGTAGTAGGTGCAGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 90 bp CGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTaGTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATC +
Preference number: 2 (lower is better)
Translates to: RGQTQLGFFPERLAI*LKPRTSPRHLMVQI
Trigger: GATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
3UTR CAA 90 bp AGCTCCAGCGGCAGCTCTCTGAGCCGAATCCCATCAGCTCCACCATaGCTGGGTGAAGGGCAGGGCTCTGATATACAAGAACAGGTTCAA +
Preference number: 2 (lower is better)
Translates to: SSSGSSLSRIPSAPP*LGEGQGSDIQEQVQ
Trigger: TTGAACCTGTTCTTGTATATCAGAGCCCTGCCCTTCACCCAGCAATGGTGGAGCTGATGGGATTCGGCTCAGAGAGCTGCCGCTGGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 90 bp CCCTGGAGATGTCCAGCCCTAGGGGCTTCGTCCCAGGGATGCTTCTaGCTACTGCTGTGCCTTCTCATGTTTGTCACTGCTATATCCCTC +
Preference number: 2 (lower is better)
Translates to: PWRCPALGASSQGCF*LLLCLLMFVTAISL
Trigger: GAGGGATATAGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCCTGGGACGAAGCCCCTAGGGCTGGACATCTCCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 90 bp GAACTGAGTCCGCCTAAGAGAGACCAAGGGCAAAGCCAGGTATGGTaGTGCATGCTTGACCCAGCGGCTGGGAGGCAAGAAAGTTACAGC +
Preference number: 2 (lower is better)
Translates to: ELSPPKRDQGQSQVW*CMLDPAAGRQESYS
Trigger: GCTGTAACTTTCTTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACCATACCTGGCTTTGCCCTTGGTCTCTCTTAGGCGGACTCAGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp GACACTGCACCTACTACACAGGATACAAGGAGAACCCCTGCCTCCCCACTAAGGCATGTGGCATGGCTTTaGGATGACCAAGAACGGGGC +
Preference number: 2 (lower is better)
Translates to: DTAPTTQDTRRTPASPLRHVAWL*DDQERG
Trigger: GCCCCGTTCTTGGTCATCTCAAAGCCATGCCACATG...CCTTAGTGGGGAGGCAGGGGTTCTCCTTGTATCCTGTGTAGTAGGTGCAGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR GCA 90 bp AATCGAGAACAGAGTGTGGCCCTTTCTCATAGACTGGCACAGGTGAGGGCGCCAGAGTTCGTGCTCCTTTaGCTGCAGAGACAGTGGGAT +
Preference number: 2 (lower is better)
Translates to: NREQSVALSHRLAQVRAPEFVLL*LQRQWD
Trigger: ATCCCACTGTCTCTGCAGGCAAAGGAGCACGAACTC...TGGCGCCCTCACCTGTGCCAGTCTATGAGAAAGGGCCACACTCTGTTCTCGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp AATCGAGAACAGAGTGTGGCCCTTTCTCATAGACTGGCACAGGTGAGGGCGCCATCACTAGTCACAGTCTaGGCACAAAGGAAGGGGAGG +
Preference number: 2 (lower is better)
Translates to: NREQSVALSHRLAQVRAPSLVTV*AQRKGR
Trigger: CCTCCCCTTCCTTTGTGCCCAGACTGTGACTAGTGA...TGGCGCCCTCACCTGTGCCAGTCTATGAGAAAGGGCCACACTCTGTTCTCGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp GCAGGCAGAGAGGAGGGCTCAGAGACACACCAAGTCACCTGCCCCGGGGCCTCAGATCTTGAGAATAGATaGATTGATTCCCCAAGGATT +
Preference number: 2 (lower is better)
Translates to: AGREEGSETHQVTCPGASDLENR*IDSPRI
Trigger: AATCCTTGGGGAATCAATCCATCTATTCTCAAGATC...TGAGGCCCCGGGGCAGGTGACTTGGTGTGTCTCTGAGCCCTCCTCTCTGCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 90 bp CCAGCGGCTGGGAGGCAAGAAAGTTACAGCAAGGTCAAGGCTAGCTaGCTCTACACAGTGAGACCCTGCCTTGAAAAACCAAGGCTGTTG +
Preference number: 2 (lower is better)
Translates to: PAAGRQESYSKVKAS*LYTVRPCLEKPRLL
Trigger: CAACAGCCTTGGTTTTTCAAGGCAGGGTCTCACTGTGTAGAGCAAGCTAGCCTTGACCTTGCTGTAACTTTCTTGCCTCCCAGCCGCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp AGCCAGTCATGGATGAGGCAAGGCTTCTGGCCAAGGCATTTAATAATAAGGAGTTCATCCCACAGGCCCTaGACAGCAGTGCCCACCACT +
Preference number: 2 (lower is better)
Translates to: SQSWMRQGFWPRHLIIRSSSHRP*TAVPTT
Trigger: AGTGGTGGGCACTGCTGTTCAGGGCCTGTGGGATGA...ACTCCTTATTATTAAATGCCTTGGCCAGAAGCCTTGCCTCATCCATGACTGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp AATCGAGAACAGAGTGTGGCCCTTTCTCATAGACTGGCACAGGTGAGGGCGCCAGCAAGAAATAGGAGGTaGGACAATGGCAGGAAGAGA +
Preference number: 2 (lower is better)
Translates to: NREQSVALSHRLAQVRAPARNRR*DNGRKR
Trigger: TCTCTTCCTGCCATTGTCCCACCTCCTATTTCTTGC...TGGCGCCCTCACCTGTGCCAGTCTATGAGAAAGGGCCACACTCTGTTCTCGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp AATCGAGAACAGAGTGTGGCCCTTTCTCATAGACTGGCACAGGTGAGGGCGCCAAAAAAGCAGGATGGGTaGTTGTTGGTTGTTTGGGAG +
Preference number: 2 (lower is better)
Translates to: NREQSVALSHRLAQVRAPKKQDG*LLVVWE
Trigger: CTCCCAAACAACCAACAACCACCCATCCTGCTTTTT...TGGCGCCCTCACCTGTGCCAGTCTATGAGAAAGGGCCACACTCTGTTCTCGATT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp GGTTGTGCATGCTTGACCCAGCGGCTGGGAGGCAAGAAAGTTACAGCAAGGTCAACCAAAAGAAACCCATaGTTAGGAAGTCACATGGCT +
Preference number: 2 (lower is better)
Translates to: GCACLTQRLGGKKVTARSTKRNP*LGSHMA
Trigger: AGCCATGTGACTTCCTAATCATGGGTTTCTTTTGGT...TGACCTTGCTGTAACTTTCTTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp CATGAGAAGGAAGGTCATGAACGAAGAGCAGGGGACTTCACTGTGTATGTAAGACTGGCTGCTGGTATGTaGGTAGCTGGATGTCCTCCA +
Preference number: 2 (lower is better)
Translates to: HEKEGHERRAGDFTVYVRLAAGM*VAGCPP
Trigger: TGGAGGACATCCAGCTACCCACATACCAGCAGCCAG...TCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp GGGATGCTTCTTGCTACTGCTGTGCCTTCTCATGTTTGTCACTGCTATATCCCTAGACTCTGCAGAGTCTaGGCAGGCTGGGAACTTAGT +
Preference number: 2 (lower is better)
Translates to: GMLLATAVPSHVCHCYIPRLCRV*AGWELS
Trigger: ACTAAGTTCCCAGCCTGCCCAGACTCTGCAGAGTCT...AGGGATATAGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 90 bp GAGGAGACACAGGAAGAATTTTGGTTTCTTTCACAAAAGGAGAGGTaGCACACTCAGGCTGGTGCCTCGCACTGTTGCACAAGTGAAACC +
Preference number: 2 (lower is better)
Translates to: EETQEEFWFLSQKER*HTQAGASHCCTSET
Trigger: GGTTTCACTTGTGCAACAGTGCGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTCTTCCTGTGTCTCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp GAATTTTGGTTTCTTTCACAAAAGGAGAGGTTGCACACTCAGGCTGGTGCCTCGAGTGAGACCCTGCCTTaGAAAACCAAGGCTGTTGGA +
Preference number: 2 (lower is better)
Translates to: EFWFLSQKERLHTQAGASSETLP*KTKAVG
Trigger: TCCAACAGCCTTGGTTTTTCAAGGCAGGGTCTCACT...CGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp CAGTCATGGATGAGGCAAGGCTTCTGGCCAAGGCATTTAATAATAAGGAGTCTTTTCCAGAGGCCATTCTaGGATCGGAAGCAGGGTCAC +
Preference number: 2 (lower is better)
Translates to: QSWMRQGFWPRHLIIRSLFQRPF*DRKQGH
Trigger: GTGACCCTGCTTCCGATCCCAGAATGGCCTCTGGAA...AAGACTCCTTATTATTAAATGCCTTGGCCAGAAGCCTTGCCTCATCCATGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp GAATTTTGGTTTCTTTCACAAAAGGAGAGGTTGCACACTCAGGCTGGTGCCTCGACCTGCACTCAGCACTaGAGATCTAACACCTCTGCA +
Preference number: 2 (lower is better)
Translates to: EFWFLSQKERLHTQAGASTCTQH*RSNTSA
Trigger: TGCAGAGGTGTTAGATCTCCAGTGCTGAGTGCAGGT...CGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 90 bp AGCTTCCCAAGTTGCATGTGTTATGCAACCAAACACACTTGGCACTaGCACATTCCGTCTCTCCAGCTCTTCACCTTTCTCTACAGCAAC +
Preference number: 2 (lower is better)
Translates to: SFPSCMCYATKHTWH*HIPSLQLFTFLYSN
Trigger: GTTGCTGTAGAGAAAGGTGAAGAGCTGGAGAGACGGAATGTGCAAGTGCCAAGTGTGTTTGGTTGCATAACACATGCAACTTGGGAAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 90 bp AGACACACCAAGTCACCTGCCCCGGGGCCTCATGTCTACCATACATaGTTACAGGGTGATCACAATTGCACATCTTATTCCCAGTTCTAT +
Preference number: 2 (lower is better)
Translates to: RHTKSPAPGPHVYHT*LQGDHNCTSYSQFY
Trigger: ATAGAACTGGGAATAAGATGTGCAATTGTGATCACCCTGTAACAATGTATGGTAGACATGAGGCCCCGGGGCAGGTGACTTGGTGTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp GGGATGCTTCTTGCTACTGCTGTGCCTTCTCATGTTTGTCACTGCTATATCCCTAAAGTGTGCAATGGGTaGAATGTGTGGGACCAGAAG +
Preference number: 2 (lower is better)
Translates to: GMLLATAVPSHVCHCYIPKVCNG*NVWDQK
Trigger: CTTCTGGTCCCACACATTTCACCCATTGCACACTTT...AGGGATATAGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR GCA 90 bp TACCAAGAGTCATTTTTATCTACAGTAGAAAGTTTGCCTCTATTTGGCCTCTGGTGGAGCCTGCAGCTCTaGTTGGCTGTGATGGGTGGG +
Preference number: 2 (lower is better)
Translates to: YQESFLSTVESLPLFGLWWSLQL*LAVMGG
Trigger: CCCACCCATCACAGCCAAGCAGAGCTGCAGGCTCCA...CCAGAGGCCAAATAGAGGCAAACTTTCTACTGTAGATAAAAATGACTCTTGGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp GAAAAAGACCACCTCATTTATAAAGATTATACAGGGCTTCTGAGAAGCCTTCACGACCCAACATGGGGCTaGGAGTGGGAAAGTCCGGAG +
Preference number: 2 (lower is better)
Translates to: EKDHLIYKDYTGLLRSLHDPTWG*EWESPE
Trigger: CTCCGGACTTTCCCACTCCCAGCCCCATGTTGGGTC...GTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTGGTCTTTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp CATGAGAAGGAAGGTCATGAACGAAGAGCAGGGGACTTCACTGTGTATGTAAGACGACCCATCAGTCTATaGGGAAGGGCTCTTCTACAA +
Preference number: 2 (lower is better)
Translates to: HEKEGHERRAGDFTVYVRRPISL*GRALLQ
Trigger: TTGTAGAAGAGCCCTTCCCCATAGACTGATGGGTCG...TCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp GGGATGCTTCTTGCTACTGCTGTGCCTTCTCATGTTTGTCACTGCTATATCCCTGGTGGCTTTAAAACTTaGGACAAATTTGAGGGGCCC +
Preference number: 2 (lower is better)
Translates to: GMLLATAVPSHVCHCYIPGGFKT*DKFEGP
Trigger: GGGCCCCTCAAATTTGTCCCAAGTTTTAAAGCCACC...AGGGATATAGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp GAAAAAGACCACCTCATTTATAAAGATTATACAGGGCTTCTGAGAAGCCTTCACGGCATGGCTTTGAGATaGCCAAGAACGGGGCCAGAC +
Preference number: 2 (lower is better)
Translates to: EKDHLIYKDYTGLLRSLHGMALR*PRTGPD
Trigger: GTCTGGCCCCGTTCTTGGTCATCTCAAAGCCATGCC...GTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTGGTCTTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp GGGATGCTTCTTGCTACTGCTGTGCCTTCTCATGTTTGTCACTGCTATATCCCTAGGAACAGCAGCAGTTaGGATACTCTGGGTTTTAGA +
Preference number: 2 (lower is better)
Translates to: GMLLATAVPSHVCHCYIPRNSSS*DTLGFR
Trigger: TCTAAAACCCAGAGTATCTCAACTGCTGCTGTTCCT...AGGGATATAGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR GCA 90 bp ACCCAGTGCGTTAACTGGGAGAAAGACAGTACTTTGCAGCAGAAGAGTGAATCAAGAAGAGATGACCAGTaGAAACATGGGCATGAGGCT +
Preference number: 2 (lower is better)
Translates to: TQCVNWEKDSTLQQKSESRRDDQ*KHGHEA
Trigger: AGCCTCATGCCCATGTTTGCACTGGTCATCTCTTCT...TGATTCACTCTTCTGCTGCAAAGTACTGTCTTTCTCCCAGTTAACGCACTGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR GCA 90 bp ACCCAGTGCGTTAACTGGGAGAAAGACAGTACTTTGCAGCAGAAGAGTGAATCAACGCAGACTAAAACCTaGACTCAGCACTGGAGATCT +
Preference number: 2 (lower is better)
Translates to: TQCVNWEKDSTLQQKSESTQTKT*TQHWRS
Trigger: AGATCTCCAGTGCTGAGTGCAGGTTTTAGTCTGCGT...TGATTCACTCTTCTGCTGCAAAGTACTGTCTTTCTCCCAGTTAACGCACTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp GAATTTTGGTTTCTTTCACAAAAGGAGAGGTTGCACACTCAGGCTGGTGCCTCGAGTCATGACATTAGCTaGCCACATTCAAGACGTGTC +
Preference number: 2 (lower is better)
Translates to: EFWFLSQKERLHTQAGASSHDIS*PHSRRV
Trigger: GACACGTCTTGAATGTGGCCAGCTAATGTCATGACT...CGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp GAAAAAGACCACCTCATTTATAAAGATTATACAGGGCTTCTGAGAAGCCTTCACTTTAGTCCCCAGGTGTaGGGATGTGGGGCTGCTTTG +
Preference number: 2 (lower is better)
Translates to: EKDHLIYKDYTGLLRSLHFSPQV*GCGAAL
Trigger: CAAAGCAGCCCCACATCCCCACACCTGGGGACTAAA...GTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTGGTCTTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp GAAAAAGACCACCTCATTTATAAAGATTATACAGGGCTTCTGAGAAGCCTTCACGGCAAAGGCAGCCACTaGATTCCGGAATGCAGATCC +
Preference number: 2 (lower is better)
Translates to: EKDHLIYKDYTGLLRSLHGKGSH*IPECRS
Trigger: GGATCTGCATTCCGGAATCCAGTGGCTGCCTTTGCC...GTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTGGTCTTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp GGGATGCTTCTTGCTACTGCTGTGCCTTCTCATGTTTGTCACTGCTATATCCCTAGAGAATTATTGCTTTaGGGTGGCAGTGAACTTGTG +
Preference number: 2 (lower is better)
Translates to: GMLLATAVPSHVCHCYIPRELLL*GGSELV
Trigger: CACAAGTTCACTGCCACCCCAAAGCAATAATTCTCT...AGGGATATAGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp TACCAAGAGTCATTTTTATCTACAGTAGAAAGTTTGCCTCTATTTGGCCTCTGGAGAGGGAATCCTCTGTaGCAGAATGGACTCGTGTGG +
Preference number: 2 (lower is better)
Translates to: YQESFLSTVESLPLFGLWRGNPL*QNGLVW
Trigger: CCACACGAGTCCATTCTGTCACAGAGGATTCCCTCT...CCAGAGGCCAAATAGAGGCAAACTTTCTACTGTAGATAAAAATGACTCTTGGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp CATGAGAAGGAAGGTCATGAACGAAGAGCAGGGGACTTCACTGTGTATGTAAGAGGAAACGAAAAGCTGTaGATACCATCAAAACTGATA +
Preference number: 2 (lower is better)
Translates to: HEKEGHERRAGDFTVYVRGNEKL*IPSKLI
Trigger: TATCAGTTTTGATGGTATCCACAGCTTTTCGTTTCC...TCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 90 bp GTTGGAGGCAGATACCAAGAGTCATTTTTATCTACAGTAGAAAGTTaGCCTCTATTTGGCCTCTGGACGTGTTTTTCTGTTTACGGTGAA +
Preference number: 2 (lower is better)
Translates to: VGGRYQESFLSTVES*PLFGLWTCFSVYGE
Trigger: TTCACCGTAAACAGAAAAACACGTCCAGAGGCCAAATAGAGGCAAACTTTCTACTGTAGATAAAAATGACTCTTGGTATCTGCCTCCAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR TCA 90 bp GAAAAAGACCACCTCATTTATAAAGATTATACAGGGCTTCTGAGAAGCCTTCACAGAGGGAGCAAAGGGTaGGAAAATAACCCACAAAGT +
Preference number: 2 (lower is better)
Translates to: EKDHLIYKDYTGLLRSLHRGSKG*ENNPQS
Trigger: ACTTTGTGGGTTATTTTCTCACCCTTTGCTCCCTCT...GTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTGGTCTTTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR GCA 90 bp AGCCAGTCATGGATGAGGCAAGGCTTCTGGCCAAGGCATTTAATAATAAGGAGTAATTGTCAAATATCTTaGATCAATATGGCAGTGGTC +
Preference number: 2 (lower is better)
Translates to: SQSWMRQGFWPRHLIIRSNCQIS*INMAVV
Trigger: GACCACTGCCATATTGATGCAAGATATTTGACAATT...ACTCCTTATTATTAAATGCCTTGGCCAGAAGCCTTGCCTCATCCATGACTGGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CCA 90 bp TACCAAGAGTCATTTTTATCTACAGTAGAAAGTTTGCCTCTATTTGGCCTCTGGGCGTCTATGGCAGAATaGATAAGGGATGTGATCGAT +
Preference number: 2 (lower is better)
Translates to: YQESFLSTVESLPLFGLWASMAE*IRDVID
Trigger: ATCGATCACATCCCTTATCCATTCTGCCATAGACGC...CCAGAGGCCAAATAGAGGCAAACTTTCTACTGTAGATAAAAATGACTCTTGGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR GCA 90 bp TACCAAGAGTCATTTTTATCTACAGTAGAAAGTTTGCCTCTATTTGGCCTCTGGAGGTGGGCAAGGCTATaGTTATTAAATCTGTCCTCA +
Preference number: 2 (lower is better)
Translates to: YQESFLSTVESLPLFGLWRWARL*LLNLSS
Trigger: TGAGGACAGATTTAATAAGCATAGCCTTGCCCACCT...CCAGAGGCCAAATAGAGGCAAACTTTCTACTGTAGATAAAAATGACTCTTGGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 90 bp CAAGAACAGGTTCAATCACATAATATTACTACTGAACAATGTTGCTaGGTGGCTTTAAAACTTGGGACAAATTTGAGGGGCCCAGGAAAA +
Preference number: 2 (lower is better)
Translates to: QEQVQSHNITTEQCC*VALKLGTNLRGPGK
Trigger: TTTTCCTGGGCCCCTCAAATTTGTCCCAAGTTTTAAAGCCACCAAGCAACATTGTTCAGTAGTAATATTATGTGATTGAACCTGTTCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp GGAGGCGGCCCCACCATGACCCGACTGGCGCCTGGCTaGTGGTATGTGGGTAGCTGGATGTCCTCCAAACGC +
Preference number: 3 (lower is better)
Translates to: GGGPTMTRLAPG*WYVGSWMSSKR
Trigger: GCGTTTGGAGGACATCCAGCTACCCACATACCAGCAGCCAGGCGCCAGTCGGGTCATGGTGGGGCCGCCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
3UTR CCA 72 bp GGCGGCCCCACCATGACCCGACTGGCGCCTGGCTGCTaGTATGTGGGTAGCTGGATGTCCTCCAAACGCACA +
Preference number: 3 (lower is better)
Translates to: GGPTMTRLAPGC*YVGSWMSSKRT
Trigger: TGTGCGTTTGGAGGACATCCAGCTACCCACATACCAGCAGCCAGGCGCCAGTCGGGTCATGGTGGGGCCGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
3UTR GCA 72 bp TGGGCAAGTGAGCTTCCTGGAGCCAGCCTGCAGCTCTaGTTGGCTGTGATGGGTGGGTGTGCCCTGGAGCCT +
Preference number: 3 (lower is better)
Translates to: WASELPGASLQL*LAVMGGCALEP
Trigger: AGGCTCCAGGGCACACCCACCCATCACAGCCAAGCAGAGCTGCAGGCTGGCTCCAGGAAGCTCACTTGCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp CCCAGGCCAGAGGCAGCTCACTGTGGTGGTTGCTGTTaGTGCCTGGATGGTGGAGCTCAGGCAGCAGACCTG +
Preference number: 3 (lower is better)
Translates to: PRPEAAHCGGCC*CLDGGAQAADL
Trigger: CAGGTCTGCTGCCTGAGCTCCACCATCCAGGCATCAACAGCAACCACCACAGTGAGCTGCCTCTGGCCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp CTGGGAGCATCAGCGGCCGCCTTAGCTGTGGCACAGTaGGGAGCTCCGAGTGGGATTCTTTCCTCCAAGGGA +
Preference number: 3 (lower is better)
Translates to: LGASAAALAVAQ*GAPSGILSSKG
Trigger: TCCCTTGGAGGAAAGAATCCCACTCGGAGCTCCTCACTGTGCCACAGCTAAGGCGGCCGCTGATGCTCCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp CACAGGCTGCTGGAGAGCCTGCCCTTGTCCTGCCTCTaGCACTACCCCAGGCTATCGTTCGGAAGAGGGAAT +
Preference number: 3 (lower is better)
Translates to: HRLLESLPLSCL*HYPRLSFGRGN
Trigger: ATTCCCTCTTCCGAACGATAGCCTGGGGTAGTGGCAGAGGCAGGACAAGGGCAGGCTCTCCAGCAGCCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp GGCCGCCTTAGCTGTGGCACAGTGAGGAGCTCCGAGTaGGATTCTTTCCTCCAAGGGACGGTGAACGCCATG +
Preference number: 3 (lower is better)
Translates to: GRLSCGTVRSSE*DSFLQGTVNAM
Trigger: CATGGCGTTCACCGTCCCTTGGAGGAAAGAATCCCACTCGGAGCTCCTCACTGTGCCACAGCTAAGGCGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp CACTCCGAGCGCTGCTGGCTTCCCCTAGGCCTTTCCTaGCATCAGCTAAACTCCTGCTCTCATGCTGTCCCC +
Preference number: 3 (lower is better)
Translates to: HSERCWLPLGLS*HQLNSCSHAVP
Trigger: GGGGACAGCATGAGAGCAGGAGTTTAGCTGATGTCAGGAAAGGCCTAGGGGAAGCCAGCAGCGCTCGGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp GTTGATGCCTGGATGGTGGAGCTCAGGCAGCAGACCTaGTACTGTGTCTGCCTGTCCAACATCCCCTTCCCA +
Preference number: 3 (lower is better)
Translates to: VDAWMVELRQQT*YCVCLSNIPFP
Trigger: TGGGAAGGGGATGTTGGACAGGCAGACACAGTAGCAGGTCTGCTGCCTGAGCTCCACCATCCAGGCATCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp AGCTCACTGTGGTGGTTGCTGTTGATGCCTGGATGGTaGAGCTCAGGCAGCAGACCTGCTACTGTGTCTGCC +
Preference number: 3 (lower is better)
Translates to: SSLWWLLLMPGW*SSGSRPATVSA
Trigger: GGCAGACACAGTAGCAGGTCTGCTGCCTGAGCTCCACCATCCAGGCATCAACAGCAACCACCACAGTGAGCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp CAGAGGCAGCTCACTGTGGTGGTTGCTGTTGATGCCTaGATGGTGGAGCTCAGGCAGCAGACCTGCTACTGT +
Preference number: 3 (lower is better)
Translates to: QRQLTVVVAVDA*MVELRQQTCYC
Trigger: ACAGTAGCAGGTCTGCTGCCTGAGCTCCACCATCCAGGCATCAACAGCAACCACCACAGTGAGCTGCCTCTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp AGTCCGCCTAAGAGAGACCAAGGGCAAAGCCAGGTATaGTTGTGCATGCTTGACCCAGCGGCTGGGAGGCAA +
Preference number: 3 (lower is better)
Translates to: SPPKRDQGQSQV*LCMLDPAAGRQ
Trigger: TTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACCATACCTGGCTTTGCCCTTGGTCTCTCTTAGGCGGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CAA 90 bp GCAGGCAGAGAGGAGGGCTCAGAGACACACCAAGTCACCTGCCCCGGGGCCTCAAAGGAGAAAACAAAGTaGTTGGAGCTTGCCTTGCTT +
Preference number: 3 (lower is better)
Translates to: AGREEGSETHQVTCPGASKEKTK*LELALL
Trigger: AAGCAAGGCAAGCTCCAACAACTTTGTTTTCTCCTT...TGAGGCCCCGGGGCAGGTGACTTGGTGTGTCTCTGAGCCCTCCTCTCTGCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp GGGGATGTGGGGCTGCTTTGGAGTGTCGGCAGCAGCTaGCATGATTTGCCTAGTGCTCTAGCAGAAGTGTGG +
Preference number: 3 (lower is better)
Translates to: GDVGLLWSVGSS*HDLPSALAEVW
Trigger: CCACACTTCTGCTAGAGCACTAGGCAAATCATGTCAGCTGCTGCCGACACTCCAAAGCAGCCCCACATCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp GCTCTGACCGACCCATCAGTCTATGGGGAAGGACTCTaGCCGACCCATCAGTCTATGGGGAAGGGCTCTTCT +
Preference number: 3 (lower is better)
Translates to: ALTDPSVYGEGL*PTHQSMGKGSS
Trigger: AGAAGAGCCCTTCCCCATAGACTGATGGGTCGGTCAGAGTCCTTCCCCATAGACTGATGGGTCGGTCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp CAGGGTCACGTTCATCCCACAGGCCCTGAACAGCAGTaGCCACCACTATTCTACAGAAGACACCGGCTCTGT +
Preference number: 3 (lower is better)
Translates to: QGHVHPTGPEQQ*PPLFYRRHRLC
Trigger: ACAGAGCCGGTGTCTTCTGTAGAATAGTGGTGGGCACTGCTGTTCAGGGCCTGTGGGATGAACGTGACCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp GCCCAGTGGTGGGAGACACACAGGAGACAGTGTGTCTaGTACTCACTACAACCCAGGACAAGTGGAGAGGCA +
Preference number: 3 (lower is better)
Translates to: AQWWETHRRQCV*YSLQPRTSGEA
Trigger: TGCCTCTCCACTTGTCCTGGGTTGTAGTGAGTAGCAGACACACTGTCTCCTGTGTGTCTCCCACCACTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp CTGGACAGAGACTGTCCCAGCTCACTAGTCACAGTCTaGGCACAAAGGAAGGGGAGGTCTACACTTGCTCGG +
Preference number: 3 (lower is better)
Translates to: LDRDCPSSLVTV*AQRKGRSTLAR
Trigger: CCGAGCAAGTGTAGACCTCCCCTTCCTTTGTGCCCAGACTGTGACTAGTGAGCTGGGACAGTCTCTGTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp TCTATGGGGAAGGGCTCTGACCGACCCATCAGTCTATaGGGAAGGACTCTGACCGACCCATCAGTCTATGGG +
Preference number: 3 (lower is better)
Translates to: SMGKGSDRPISL*GRTLTDPSVYG
Trigger: CCCATAGACTGATGGGTCGGTCAGAGTCCTTCCCCATAGACTGATGGGTCGGTCAGAGCCCTTCCCCATAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CAA 90 bp GACACTGCACCTACTACACAGGATACAAGGAGAACCCCTGCCTCCCCACTAAGGAGCTCACTGTGGTGGTaGCTGTTGATGCCTGGATGG +
Preference number: 3 (lower is better)
Translates to: DTAPTTQDTRRTPASPLRSSLWW*LLMPGW
Trigger: CCATCCAGGCATCAACAGCAACCACCACAGTGAGCT...CCTTAGTGGGGAGGCAGGGGTTCTCCTTGTATCCTGTGTAGTAGGTGCAGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp CCAGGGTGGCTGCTCAGATGGAACGCACATCTCCCATaGGTAAAGACCAGACAAACCCACATTCCAGAGGCC +
Preference number: 3 (lower is better)
Translates to: PGWLLRWNAHLP*VKTRQTHIPEA
Trigger: GGCCTCTGGAATGTGGGTTTGTCTGGTCTTTACTCATGGGAGATGTGCGTTCCATCTGAGCAGCCACCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp CGTCAGGGTCCTCACCATTATGTCTCTCAAGTGCACTaGGGCCAGGGCAGGGTGAAGCAGTCATCAGTTTCC +
Preference number: 3 (lower is better)
Translates to: RQGPHHYVSQVH*GQGRVKQSSVS
Trigger: GGAAACTGATGACTGCTTCACCCTGCCCTGGCCTCAGTGCACTTGAGAGACATAATGGTGAGGACCCTGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp TGGCTGATCTACCCATCAGTCTATGGGGAAGGGCTCTaGCCGACCCATCAGTCTATGGGGAAGGACTCTGAC +
Preference number: 3 (lower is better)
Translates to: WLIYPSVYGEGL*PTHQSMGKDSD
Trigger: GTCAGAGTCCTTCCCCATAGACTGATGGGTCGGTCAGAGCCCTTCCCCATAGACTGATGGGTAGATCAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp TGCTGTCCCCGCATCTTCCAAGGACTCACAACGTTATaGCCACTGCTTCTGGAGGTGATGCAGATGACCCCA +
Preference number: 3 (lower is better)
Translates to: CCPRIFQGLTTL*PLLLEVMQMTP
Trigger: TGGGGTCATCTGCATCACCTCCAGAAGCAGTGGGCATAACGTTGTGAGTCCTTGGAAGATGCGGGGACAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp TCAGCCAGGAGAGGAAGAGAGCTCACTGTGTGTGTGTaGTCTCTGGACAGAGACTGTCCCAGCTCACTAGTC +
Preference number: 3 (lower is better)
Translates to: SARRGRELTVCV*SLDRDCPSSLV
Trigger: GACTAGTGAGCTGGGACAGTCTCTGTCCAGAGACCACACACACACAGTGAGCTCTCTTCCTCTCCTGGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp TGGGTAGCTGGATGTCCTCCAAACGCACACCGGGAGTaGCTGAATGCTTCCATGTGGCATGGCTTTGAGATG +
Preference number: 3 (lower is better)
Translates to: WVAGCPPNAHRE*LNASMWHGFEM
Trigger: CATCTCAAAGCCATGCCACATGGAAGCATTCAGTCACTCCCGGTGTGCGTTTGGAGGACATCCAGCTACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
3UTR TCA 72 bp CCCCGCTCCCCCGCGCGCAAACCAATCCATTCCCACTaGGCACAGAACCTAAGACAATTTATGCCTGTGAAT +
Preference number: 3 (lower is better)
Translates to: PRSPARKPIHSH*AQNLRQFMPVN
Trigger: ATTCACAGGCATAAATTGTCTTAGGTTCTGTGCTCAGTGGGAATGGATTGGTTTGCGCGCGGGGGAGCGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp CTCAGGAAACCCTGCTTAGTGGAAAACTCTATCCTCTaGTCCTCAGGGTGGGTTAGCTCTGGAGTGGGGGAC +
Preference number: 3 (lower is better)
Translates to: LRKPCLVENSIL*SSGWVSSGVGD
Trigger: GTCCCCCACTCCAGAGCTAACCCACCCTGAGGATCAGAGGATAGAGTTTTCCACTAAGCAGGGTTTCCTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp AAGACTGCTTCTGGGCTTAGAAAAGGTTTGTGGGTGTaGGGGATGGAGGGCCTCCCTGTTGCTCAGGAAACC +
Preference number: 3 (lower is better)
Translates to: KTASGLRKGLWV*GMEGLPVAQET
Trigger: GGTTTCCTGAGCAACAGGGAGGCCCTCCATCCCTCACACCCACAAACCTTTTCTAAGCCCAGAAGCAGTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp AGAGAGACCAAGGGCAAAGCCAGGTATGGTTGTGCATaGTTGACCCAGCGGCTGGGAGGCAAGAAAGTTACA +
Preference number: 3 (lower is better)
Translates to: RETKGKARYGCA*LTQRLGGKKVT
Trigger: TGTAACTTTCTTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACCATACCTGGCTTTGCCCTTGGTCTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp ACATCAAAAGATCTTCAGGGACATCGAGCGGCCCAGTaGTGGGAGACACACAGGAGACAGTGTGTCTGCTAC +
Preference number: 3 (lower is better)
Translates to: TSKDLQGHRAAQ*WETHRRQCVCY
Trigger: GTAGCAGACACACTGTCTCCTGTGTGTCTCCCACCACTGGGCCGCTCGATGTCCCTGAAGATCTTTTGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp TCTATGGGGAAGGACTCTGACCGACCCATCAGTCTATaGGGAAGGGCTCTTCTACAACTGTGCAGTGCTCAG +
Preference number: 3 (lower is better)
Translates to: SMGKDSDRPISL*GRALLQLCSAQ
Trigger: CTGAGCACTGCACAGTTGTAGAAGAGCCCTTCCCCATAGACTGATGGGTCGGTCAGAGTCCTTCCCCATAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp CTAAGACCTGATGTGGCTGATCTACCCATCAGTCTATaGGGAAGGGCTCTGACCGACCCATCAGTCTATGGG +
Preference number: 3 (lower is better)
Translates to: LRPDVADLPISL*GRALTDPSVYG
Trigger: CCCATAGACTGATGGGTCGGTCAGAGCCCTTCCCCATAGACTGATGGGTAGATCAGCCACATCAGGTCTTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp CTTCTGGGCTTAGAAAAGGTTTGTGGGTGTGAGGGATaGAGGGCCTCCCTGTTGCTCAGGAAACCCTGCTTA +
Preference number: 3 (lower is better)
Translates to: LLGLEKVCGCEG*RASLLLRKPCL
Trigger: TAAGCAGGGTTTCCTGAGCAACAGGGAGGCCCTCCATCCCTCACACCCACAAACCTTTTCTAAGCCCAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp TTCAGCGAGTCTGAGGGGGAGCAAACTGTGATCGAATaGTGTAGAGCCTCTTCAGCCAGGAGAGGAAGAGAG +
Preference number: 3 (lower is better)
Translates to: FSESEGEQTVIE*CRASSARRGRE
Trigger: CTCTCTTCCTCTCCTGGCTGAAGAGGCTCTACATCATTCGATCACAGTTTGCTCCCCCTCAGACTCGCTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp ATTGTCAAATATCTTGCATCAATATGGCAGTGGTCCTaGCAGGTAGGGAGGAACGGGCAACACGGGGTGGCC +
Preference number: 3 (lower is better)
Translates to: IVKYLASIWQWS*QVGRNGQHGVA
Trigger: GGCCACCCCGTGTTGCCCGTTCCTCCCTACCTGTCAGGACCACTGCCATATTGATGCAAGATATTTGACAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp ATTATGTCTCTCAAGTGCACTGAGGCCAGGGCAGGGTaGAGCAGTCATCAGTTTCCCTACACAGAAGGTGGC +
Preference number: 3 (lower is better)
Translates to: IMSLKCTEARAG*SSHQFPYTEGG
Trigger: GCCACCTTCTGTGTAGGGAAACTGATGACTGCTTCACCCTGCCCTGGCCTCAGTGCACTTGAGAGACATAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp GCACAAGCGTCATCGTGTGGGAAGAGTAAGTTTCAGTaGCAAGTCACTGGCTCCCTCATACGTCAGGGTCCT +
Preference number: 3 (lower is better)
Translates to: AQASSCGKSKFQ*QVTGSLIRQGP
Trigger: AGGACCCTGACGTATGAGGGAGCCAGTGACTTGTCACTGAAACTTACTCTTCCCACACGATGACGCTTGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp CCACTGATTTCTAGGAAACCCACCTGTTGCAGTATGTaGTACCTGAGAGCAAGCCAGGGTGGCTGCTCAGAT +
Preference number: 3 (lower is better)
Translates to: PLISRKPTCCSM*YLRASQGGCSD
Trigger: ATCTGAGCAGCCACCCTGGCTTGCTCTCAGGTAGCACATACTGCAACAGGTGGGTTTCCTAGAAATCAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp GCTATCGTTCGGAAGAGGGAATCCTCTGTGACAGAATaGACTCGTGTGGCTTACCAGGCCAGCAGAGTATCA +
Preference number: 3 (lower is better)
Translates to: AIVRKRESSVTE*TRVAYQASRVS
Trigger: TGATACTCTGCTGGCCTGGTAAGCCACACGAGTCCATTCTGTCACAGAGGATTCCCTCTTCCGAACGATAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp GGTTCACTTTCCCTCTATCGGGAAGACAGGTTTTCATaGTTAAGGAGACCCAACATGGGGCTGGGAGTGGGA +
Preference number: 3 (lower is better)
Translates to: GSLSLYREDRFS*LRRPNMGLGVG
Trigger: TCCCACTCCCAGCCCCATGTTGGGTCTCCTTAACCATGAAAACCTGTCTTCCCGATAGAGGGAAAGTGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp ACAGTGTGTCTGCTACTCACTACAACCCAGGACAAGTaGAGAGGCAGGACAGACACTGCACCTACTACACAG +
Preference number: 3 (lower is better)
Translates to: TVCLLLTTTQDK*RGRTDTAPTTQ
Trigger: CTGTGTAGTAGGTGCAGTGTCTGTCCTGCCTCTCCACTTGTCCTGGGTTGTAGTGAGTAGCAGACACACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CAA 90 bp GAATTTTGGTTTCTTTCACAAAAGGAGAGGTTGCACACTCAGGCTGGTGCCTCGAGAGTTCGTGCTCCTTaGCCTGCAGAGACAGTGGGA +
Preference number: 3 (lower is better)
Translates to: EFWFLSQKERLHTQAGASRVRAP*PAETVG
Trigger: TCCCACTGTCTCTGCAGGCAAAGGAGCACGAACTCT...CGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp ATGGTTCTCCCGACTAAGGCAGCTAAGGGACATCCATaGGCACTCGGGTCTCTCCAGGGTGTTATAACAATG +
Preference number: 3 (lower is better)
Translates to: MVLPTKAAKGHP*ALGSLQGVITM
Trigger: CATTGTTATAACACCCTGGAGAGACCCGAGTGCTCATGGATGTCCCTTAGCTGCCTTAGTCGGGAGAACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp CTAGATGTTTCAGCGAGTCTGAGGGGGAGCAAACTGTaGTCGAATGATGTAGAGCCTCTTCAGCCAGGAGAG +
Preference number: 3 (lower is better)
Translates to: LDVSASLRGSKL*SNDVEPLQPGE
Trigger: CTCTCCTGGCTGAAGAGGCTCTACATCATTCGATCACAGTTTGCTCCCCCTCAGACTCGCTGAAACATCTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp TTTGTAACTCCAGCTCCAGGAGGATCGGATTCCTTCTaGTCTCCTGAAGCATGGGGGACATGTGGTGCAAAG +
Preference number: 3 (lower is better)
Translates to: FVTPAPGGSDSF*SPEAWGTCGAK
Trigger: CTTTGCACCACATGTCCCCCATGCTTCAGGAGATCAGAAGGAATCCGATCCTCCTGGAGCTGGAGTTACAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp CTTGAATGTCCACTGATTTCTAGGAAACCCACCTGTTaGAGTATGTGCTACCTGAGAGCAAGCCAGGGTGGC +
Preference number: 3 (lower is better)
Translates to: LECPLISRKPTC*SMCYLRASQGG
Trigger: GCCACCCTGGCTTGCTCTCAGGTAGCACATACTGCAACAGGTGGGTTTCCTAGAAATCAGTGGACATTCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp TCTGAGAGCGACCCTTGTCATAGAAGAGATGACCAGTaGAAACATGGGCATGAGGCTCCACAAGTGCATTGC +
Preference number: 3 (lower is better)
Translates to: SESDPCHRRDDQ*KHGHEAPQVHC
Trigger: GCAATGCACTTGTGGAGCCTCATGCCCATGTTTGCACTGGTCATCTCTTCTATGACAAGGGTCGCTCTCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp CTGTTCCAGTCAAGCCATAACACGCAGACTAAAACCTaGACTCAGCACTGGAGATCTAACACCTCTGCAGGC +
Preference number: 3 (lower is better)
Translates to: LFQSSHNTQTKT*TQHWRSNTSAG
Trigger: GCCTGCAGAGGTGTTAGATCTCCAGTGCTGAGTGCAGGTTTTAGTCTGCGTGTTATGGCTTGACTGGAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp AAGGTCAAGGCTAGCTTGCTCTACACAGTGAGACCCTaGCTTGAAAAACCAAGGCTGTTGGAGGCAGATACC +
Preference number: 3 (lower is better)
Translates to: KVKASLLYTVRP*LEKPRLLEADT
Trigger: GGTATCTGCCTCCAACAGCCTTGGTTTTTCAAGGCAGGGTCTCACTGTGTAGAGCAAGCTAGCCTTGACCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp AACCAAAAGAAACCCATGATTAGGAAGTCACATGGCTaGTGGCGGTTTGGGTCCACCGAGTGGATGATGATG +
Preference number: 3 (lower is better)
Translates to: NQKKPMIRKSHG*WRFGSTEWMMM
Trigger: CATCATCATCCACTCGGTGGACCCAAACCGCCATCAGCCATGTGACTTCCTAATCATGGGTTTCTTTTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp ATTCATTCCAGGTTGGGTCTAAGTTCCTTGATCTTGTaGTCCAGAGGTGTGGCACTGGTTTCTGTGTGCACC +
Preference number: 3 (lower is better)
Translates to: IHSRLGLSSLIL*SRGVALVSVCT
Trigger: GGTGCACACAGAAACCAGTGCCACACCTCTGGATCACAAGATCAAGGAACTTAGACCCAACCTGGAATGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp TTTCTGGCCACAAAGAAAAAGGTACTGAAGAAGAACTaGGTCCGCCTAAGAGAGACCAAGGGCAAAGCCAGG +
Preference number: 3 (lower is better)
Translates to: FLATKKKVLKKN*VRLRETKGKAR
Trigger: CCTGGCTTTGCCCTTGGTCTCTCTTAGGCGGACTCAGTTCTTCTTCAGTACCTTTTTCTTTGTGGCCAGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp AGCCTCCTGACAAAGCTTCCCAAGTTGCATGTGTTATaGAACCAAACACACTTGGCACTTGCACATTCCGTC +
Preference number: 3 (lower is better)
Translates to: SLLTKLPKLHVL*NQTHLALAHSV
Trigger: GACGGAATGTGCAAGTGCCAAGTGTGTTTGGTTGCATAACACATGCAACTTGGGAAGCTTTGTCAGGAGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp ACTGTCCTTTTCTGGACGATCATAAACCACAGACTCTaGAGAGTCTGGGCAGGCTGGGAACTTAGTGAATAC +
Preference number: 3 (lower is better)
Translates to: TVLFWTIINHRL*RVWAGWELSEY
Trigger: GTATTCACTAAGTTCCCAGCCTGCCCAGACTCTGCAGAGTCTGTGGTTTATGATCGTCCAGAAAAGGACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp CATGATTTGCCTAGTGCTCTAGCAGAAGTGTGGTTTTaGCAGCTGCAGACAGTCTCTGGCATTGTGTCAAGT +
Preference number: 3 (lower is better)
Translates to: HDLPSALAEVWF*QLQTVSGIVSS
Trigger: ACTTGACACAATGCCAGAGACTGTCTGCAGCTGGCAAAACCACACTTCTGCTAGAGCACTAGGCAAATCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp ATGCAAATTAATGCAGGTGATAGAGGCTTGTTCGGCTaGTACTGTTTCCCTGTCCCAGAGACAAAGCTGCTC +
Preference number: 3 (lower is better)
Translates to: MQINAGDRGLFG*YCFPVPETKLL
Trigger: GAGCAGCTTTGTCTCTGGGACAGGGAAACAGTAGCAGCCGAACAAGCCTCTATCACCTGCATTAATTTGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp GCCCACCACTATTCTACAGAAGACACCGGCTCTGTGTaGCTCGTGTCTGTCCTGTATCAATTGTCAAATATC +
Preference number: 3 (lower is better)
Translates to: AHHYSTEDTGSV*LVSVLYQLSNI
Trigger: GATATTTGACAATTGATACAGGACAGACACGAGCCACACAGAGCCGGTGTCTTCTGTAGAATAGTGGTGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp TTCCCAAGTTGCATGTGTTATGCAACCAAACACACTTaGCACTTGCACATTCCGTCTCTCCAGCTCTTCACC +
Preference number: 3 (lower is better)
Translates to: FPSCMCYATKHT*HLHIPSLQLFT
Trigger: GGTGAAGAGCTGGAGAGACGGAATGTGCAAGTGCCAAGTGTGTTTGGTTGCATAACACATGCAACTTGGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp CTACACCCAGGTTCAATTAAATCCCCAGCATCCACATaGAAGCACACAGCTATTTGTAACTCCAGCTCCAGG +
Preference number: 3 (lower is better)
Translates to: LHPGSIKSPAST*KHTAICNSSSR
Trigger: CCTGGAGCTGGAGTTACAAATAGCTGTGTGCTTCCATGTGGATGCTGGGGATTTAATTGAACCTGGGTGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp AGTCTCAGCTGTGAAGGAAGCCGTACCAGATCAAGATaGAGGCAGGTGTTGATAGAGGCCTTAGTTGTTGAA +
Preference number: 3 (lower is better)
Translates to: SLSCEGSRTRSR*RQVLIEALVVE
Trigger: TTCAACAACTAAGGCCTCTATCAACACCTGCCTTCATCTTGATCTGGTACGGCTTCCTTCACAGCTGAGACT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp TTCTCATGTTTGTCACTGCTATATCCCTCATGTACTTaGCATAGTGAGACACTCACTGCCTCCGTAGCCTGG +
Preference number: 3 (lower is better)
Translates to: FSCLSLLYPSCT*HSETLTASVAW
Trigger: CCAGGCTACGGAGGCAGTGAGTGTCTCACTATGTCAAGTACATGAGGGATATAGCAGTGACAAACATGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp CTGAGCACAGAACCTAAGACAATTTATGCCTGTGAATaGGAAGACGGCATTCCTCTCATGCACTCCAAACCG +
Preference number: 3 (lower is better)
Translates to: LSTEPKTIYACE*EDGIPLMHSKP
Trigger: CGGTTTGGAGTGCATGAGAGGAATGCCGTCTTCTCATTCACAGGCATAAATTGTCTTAGGTTCTGTGCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp GGCTCGTGTCTGTCCTGTATCAATTGTCAAATATCTTaGATCAATATGGCAGTGGTCCTGACAGGTAGGGAG +
Preference number: 3 (lower is better)
Translates to: GSCLSCINCQIS*INMAVVLTGRE
Trigger: CTCCCTACCTGTCAGGACCACTGCCATATTGATGCAAGATATTTGACAATTGATACAGGACAGACACGAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp GTTGCATGTGTTATGCAACCAAACACACTTGGCACTTaGACATTCCGTCTCTCCAGCTCTTCACCTTTCTCT +
Preference number: 3 (lower is better)
Translates to: VACVMQPNTLGT*TFRLSSSSPFS
Trigger: AGAGAAAGGTGAAGAGCTGGAGAGACGGAATGTGCAAGTGCCAAGTGTGTTTGGTTGCATAACACATGCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp AGGAAGAATTTTGGTTTCTTTCACAAAAGGAGAGGTTaGACACTCAGGCTGGTGCCTCGCACTGTTGCACAA +
Preference number: 3 (lower is better)
Translates to: RKNFGFFHKRRG*TLRLVPRTVAQ
Trigger: TTGTGCAACAGTGCGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTCTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp TTCTGGACGATCATAAACCACAGACTCTGCAGAGTCTaGGCAGGCTGGGAACTTAGTGAATACCACATTTTC +
Preference number: 3 (lower is better)
Translates to: FWTIINHRLCRV*AGWELSEYHIF
Trigger: GAAAATGTGGTATTCACTAAGTTCCCAGCCTGCCCAGACTCTGCAGAGTCTGTGGTTTATGATCGTCCAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp TTGGGCTGTTTGGCTAACAGAGACTTGAATGTCCACTaGTTTCTAGGAAACCCACCTGTTGCAGTATGTGCT +
Preference number: 3 (lower is better)
Translates to: LGCLANRDLNVH*FLGNPPVAVCA
Trigger: AGCACATACTGCAACAGGTGGGTTTCCTAGAAATCAGTGGACATTCAAGTCTCTGTTAGCCAAACAGCCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp CCCATCAGTCTATGGGGAAGGGCTCTTCTACAACTGTaGAGTGCTCAGATTAATATTCATGCAATCCTACAG +
Preference number: 3 (lower is better)
Translates to: PISLWGRALLQL*SAQINIHAILQ
Trigger: CTGTAGGATTGCATGAATATTAATCTGAGCACTGCACAGTTGTAGAAGAGCCCTTCCCCATAGACTGATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp AGCATTACTCTATATCCAAAACTTCGAGAGAGTTCGTaGTCCTTTGCCTGCAGAGACAGTGGGATGATCTTG +
Preference number: 3 (lower is better)
Translates to: SITLYPKLRESS*SFACRDSGMIL
Trigger: CAAGATCATCCCACTGTCTCTGCAGGCAAAGGAGCACGAACTCTCTCGAAGTTTTGGATATAGAGTAATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp ATGCACTTTGGCAAAGGCAGCCACTGGATTCCGGAATaGAGATCCAAAAGAGATATTCAAGGAAACAGCCTT +
Preference number: 3 (lower is better)
Translates to: MHFGKGSHWIPE*RSKRDIQGNSL
Trigger: AAGGCTGTTTCCTTGAATATCTCTTTTGGATCTGCATTCCGGAATCCAGTGGCTGCCTTTGCCAAAGTGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp AAACGAGCTGAAGGAGAAAACAAAGTTGTTGGAGCTTaGCTTGCTTCAGCCACTCAGTGTAGGATTTTCCCA +
Preference number: 3 (lower is better)
Translates to: KRAEGENKVVGA*LASATQCRIFP
Trigger: TGGGAAAATCCTACACTGAGTGGCTGAAGCAAGGCAAGCTCCAACAACTTTGTTTTCTCCTTCAGCTCGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp AAAGTGATGCCACCGCTTACAGCTCATTTCTTCGTGTaGCTTTTACACCTGAGCCAGAACTTGTCAACCAAA +
Preference number: 3 (lower is better)
Translates to: KVMPPLTAHFFV*LLHLSQNLSTK
Trigger: TTTGGTTGACAAGTTCTGGCTCAGGTGTAAAAGCCACACGAAGAAATGAGCTGTAAGCGGTGGCATCACTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp GACAATGAGAAACCGCAACTGTCTTTTGGAGAGAGATaGTTCACTTTCCCTCTATCGGGAAGACAGGTTTTC +
Preference number: 3 (lower is better)
Translates to: DNEKPQLSFGER*FTFPLSGRQVF
Trigger: GAAAACCTGTCTTCCCGATAGAGGGAAAGTGAACCATCTCTCTCCAAAAGACAGTTGCGGTTTCTCATTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp CCTGCAATGTGTATGCACTTTGGCAAAGGCAGCCACTaGATTCCGGAATGCAGATCCAAAAGAGATATTCAA +
Preference number: 3 (lower is better)
Translates to: PAMCMHFGKGSH*IPECRSKRDIQ
Trigger: TTGAATATCTCTTTTGGATCTGCATTCCGGAATCCAGTGGCTGCCTTTGCCAAAGTGCATACACATTGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp CGCTTACAGCTCATTTCTTCGTGTGGCTTTTACACCTaGGCCAGAACTTGTCAACCAAAAGAAACCCATGAT +
Preference number: 3 (lower is better)
Translates to: RLQLISSCGFYT*ARTCQPKETHD
Trigger: ATCATGGGTTTCTTTTGGTTGACAAGTTCTGGCTCAGGTGTAAAAGCCACACGAAGAAATGAGCTGTAAGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp TCTATATCCAAAACTTCGAGAGAGTTCGTGCTCCTTTaGCTGCAGAGACAGTGGGATGATCTTGAGAATAGA +
Preference number: 3 (lower is better)
Translates to: SISKTSREFVLL*LQRQWDDLENR
Trigger: TCTATTCTCAAGATCATCCCACTGTCTCTGCAGGCAAAGGAGCACGAACTCTCTCGAAGTTTTGGATATAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp ATCATAAACCACAGACTCTGCAGAGTCTGGGCAGGCTaGGAACTTAGTGAATACCACATTTTCATCCAACAT +
Preference number: 3 (lower is better)
Translates to: IINHRLCRVWAG*ELSEYHIFIQH
Trigger: ATGTTGGATGAAAATGTGGTATTCACTAAGTTCCCAGCCTGCCCAGACTCTGCAGAGTCTGTGGTTTATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp TGGGTGGTTGTTGGTTGTTTGGGAGTTGTGTGTGGTTaGTTGTGGTTTCTTCGTAGTGTTCAAAGAAGAAAG +
Preference number: 3 (lower is better)
Translates to: WVVVGCLGVVCG*LWFLRSVQRRK
Trigger: CTTTCTTCTTTGAACACTACGAAGAAACCACAACCAACCACACACAACTCCCAAACAACCAACAACCACCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CAA 90 bp CATGAGAAGGAAGGTCATGAACGAAGAGCAGGGGACTTCACTGTGTATGTAAGATTCAGAATGGCCACTTaGGAAGGTTTATACAGTTTC +
Preference number: 3 (lower is better)
Translates to: HEKEGHERRAGDFTVYVRFRMAT*EGLYSF
Trigger: GAAACTGTATAAACCTTCCAAAGTGGCCATTCTGAA...TCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp AGCAGGAGAGGTCTCCTCAACACCTTGGCACTAACCTaGACACTCAGTTCCTTGAAAATGTCTGTTTATAAT +
Preference number: 3 (lower is better)
Translates to: SRRGLLNTLALT*TLSSLKMSVYN
Trigger: ATTATAAACAGACATTTTCAAGGAACTGAGTGTTCAGGTTAGTGCCAAGGTGTTGAGGAGACCTCTCCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp CAAGAGAATTATTGCTTTGGGGTGGCAGTGAACTTGTaGAGAGAAAGACAGATGAGGAATGTAGAGTTAGGT +
Preference number: 3 (lower is better)
Translates to: QENYCFGVAVNL*RERQMRNVELG
Trigger: ACCTAACTCTACATTCCTCATCTGTCTTTCTCTCCACAAGTTCACTGCCACCCCAAAGCAATAATTCTCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR TCA 72 bp ACTCTCTACTTGGTCTGCTTAAGCTTTGTTAGTCTATaGCAAGAGAATTATTGCTTTGGGGTGGCAGTGAAC +
Preference number: 3 (lower is better)
Translates to: TLYLVCLSFVSL*QENYCFGVAVN
Trigger: GTTCACTGCCACCCCAAAGCAATAATTCTCTTGTCATAGACTAACAAAGCTTAAGCAGACCAAGTAGAGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR-3UTR CAA 90 bp GAAAAAGACCACCTCATTTATAAAGATTATACAGGGCTTCTGAGAAGCCTTCACAACCGCAACTGTCTTTaGGAGAGAGATGGTTCACTT +
Preference number: 3 (lower is better)
Translates to: EKDHLIYKDYTGLLRSLHNRNCL*ERDGSL
Trigger: AAGTGAACCATCTCTCTCCAAAAGACAGTTGCGGTT...GTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTGGTCTTTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp GTTGTTGGTTGTTTGGGAGTTGTGTGTGGTTGGTTGTaGTTTCTTCGTAGTGTTCAAAGAAGAAAGGAATTT +
Preference number: 3 (lower is better)
Translates to: VVGCLGVVCGWL*FLRSVQRRKEF
Trigger: AAATTCCTTTCTTCTTTGAACACTACGAAGAAACCACAACCAACCACACACAACTCCCAAACAACCAACAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp TTATCTACAGTAGAAAGTTTGCCTCTATTTGGCCTCTaGACGTGTTTTTCTGTTTACGGTGAATGGAGATCA +
Preference number: 3 (lower is better)
Translates to: LSTVESLPLFGL*TCFSVYGEWRS
Trigger: TGATCTCCATTCACCGTAAACAGAAAAACACGTCCAGAGGCCAAATAGAGGCAAACTTTCTACTGTAGATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CCA 72 bp GATATACACAGCACAATTAATGACTTAAAACAGAAGTaGGGAATCGTGGTGAGAACTCTGGAATTCTGGTTT +
Preference number: 3 (lower is better)
Translates to: DIHSTINDLKQK*GIVVRTLEFWF
Trigger: AAACCAGAATTCCAGAGTTCTCACCACGATTCCCCACTTCTGTTTTAAGTCATTAATTGTGCTGTGTATATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR GCA 72 bp CAGGTTCAATCACATAATATTACTACTGAACAATGTTaGTTGGTGGCTTTAAAACTTGGGACAAATTTGAGG +
Preference number: 3 (lower is better)
Translates to: QVQSHNITTEQC*LVALKLGTNLR
Trigger: CCTCAAATTTGTCCCAAGTTTTAAAGCCACCAAGCAACATTGTTCAGTAGTAATATTATGTGATTGAACCTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp GCTCAGGGCGGGCGAGAGCAGCCTCCACCCTCCAGCCCAGGGCATAGCTCACAGGGCCAGCACCATCATTaGGAAAACAATGGCGGCCGG +
Preference number: 4 (lower is better)
Translates to: AQGGREQPPPSSPGHSSQGQHHH*ENNGGR
Trigger: CCGGCCGCCATTGTTTTCCCAATGATGGTGCTGGCC...CTGTGAGCTATGCCCTGGGCTGGAGGGTGGAGGCTGCTCTCGCCCGCCCTGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp GCAGGCAGAGAGGAGGGCTCAGAGACACACCAAGTCACCTGCCCCGGGGCCTCACGGAGCAGCTCCTGCTaGTCCAGGATCAGGTCTGAG +
Preference number: 4 (lower is better)
Translates to: AGREEGSETHQVTCPGASRSSSC*SRIRSE
Trigger: CTCAGACCTGATCCTGGACCAGCAGGAGCTGCTCCG...TGAGGCCCCGGGGCAGGTGACTTGGTGTGTCTCTGAGCCCTCCTCTCTGCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp AATCGAGAACAGAGTGTGGCCCTTTCTCATAGACTGGCACAGGTGAGGGCGCCACCTCCTCGCCCTGGCTaGCTCCTTTGCCCCGCCCTC +
Preference number: 4 (lower is better)
Translates to: NREQSVALSHRLAQVRAPPPRPG*LLCPAL
Trigger: GAGGGCGGGGCAAAGGAGCCAGCCAGGGCGAGGAGG...TGGCGCCCTCACCTGTGCCAGTCTATGAGAAAGGGCCACACTCTGTTCTCGATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp AGCTGGATGTCCTCCAAACGCACACCGGGAGTGACTGAATGCTTCCATGTGGCACCTCCTCGCCCTGGCTaGCTCCTTTGCCCCGCCCTC +
Preference number: 4 (lower is better)
Translates to: SWMSSKRTPGVTECFHVAPPRPG*LLCPAL
Trigger: GAGGGCGGGGCAAAGGAGCCAGCCAGGGCGAGGAGG...TGCCACATGGAAGCATTCAGTCACTCCCGGTGTGCGTTTGGAGGACATCCAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp GACCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTGTGCTGGTCCCACCCTaGTCCACCACAGCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: DQERGQTQLGFFPERLAIVLVPP*STTASS
Trigger: TGAGGAAGCTGTGGTGGATCAGGGTGGGACCAGCAC...AATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp TGGGGCTGGGAGTGGGAAAGTCCGGAGCCTCCTGACAAAGCTTCCCAAGTTGCAAGGGAGCCTTCCGCTTaGCATCCAGCACCAAGCCCC +
Preference number: 4 (lower is better)
Translates to: WGWEWESPEPPDKASQVAREPSA*HPAPSP
Trigger: GGGGCTTGGTGCTGGATGTCAAGCGGAAGGCTCCCT...TGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTTCCCACTCCCAGCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp GAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTATGGTGCCGATGGCTCTaGCTCCCCAGCGGCATCCGA +
Preference number: 4 (lower is better)
Translates to: ERGQTQLGFFPERLAILLWCRWL*LPSGIR
Trigger: TCGGATGCCGCTGGGGAGGCAGAGCCATCGGCACCA...TAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp GACCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTAGTTCTGGCCCACTGTaGCCCCCATGTGGCTCTGGT +
Preference number: 4 (lower is better)
Translates to: DQERGQTQLGFFPERLAISSGPL*PPCGSG
Trigger: ACCAGAGCCACATGGGGGGCACAGTGGGCCAGAACT...AATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp GACACTGCACCTACTACACAGGATACAAGGAGAACCCCTGCCTCCCCACTAAGGCGGTGCTTCTGGCCATaGGTGCGGTGGTGCCGATGG +
Preference number: 4 (lower is better)
Translates to: DTAPTTQDTRRTPASPLRRCFWP*VRWCRW
Trigger: CCATCGGCACCACCGCACTCATGGCCAGAAGCACCG...CCTTAGTGGGGAGGCAGGGGTTCTCCTTGTATCCTGTGTAGTAGGTGCAGTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp GAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAGGGAGCCTTCCGCTTaGCATCCAGCACCAAGCCCC +
Preference number: 4 (lower is better)
Translates to: ERGQTQLGFFPERLAILLREPSA*HPAPSP
Trigger: GGGGCTTGGTGCTGGATGTCAAGCGGAAGGCTCCCT...TAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp TGGGGCTGGGAGTGGGAAAGTCCGGAGCCTCCTGACAAAGCTTCCCAAGTTGCACGCAGGCAGATCCCATaGACTCCCCGTGCATCTCCT +
Preference number: 4 (lower is better)
Translates to: WGWEWESPEPPDKASQVARRQIP*TPRASP
Trigger: AGGAGATGCACGGGGAGTTCATGGGATCTGCCTGCG...TGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTTCCCACTCCCAGCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp TGGGGCTGGGAGTGGGAAAGTCCGGAGCCTCCTGACAAAGCTTCCCAAGTTGCAGCTTCTGGCCATGAGTaGGGTGGTGCCGATGGCTCT +
Preference number: 4 (lower is better)
Translates to: WGWEWESPEPPDKASQVAASGHE*GGADGS
Trigger: AGAGCCATCGGCACCACCGCACTCATGGCCAGAAGC...TGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTTCCCACTCCCAGCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp GACCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTGAGTGCGGGTCAGACTaGTTCTTGCCAACCTCAGCG +
Preference number: 4 (lower is better)
Translates to: DQERGQTQLGFFPERLAIECGSD*FLPTSA
Trigger: CGCTGAGGTTGGCAAGAAGCAGTCTGACCCGCACTC...AATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCAGAGACTCGGTGCTTCTGGCCATaGGTGCGGTGGTGCCGATGG +
Preference number: 4 (lower is better)
Translates to: PRTSPRHLMVQIFHSAETRCFWP*VRWCRW
Trigger: CCATCGGCACCACCGCACTCATGGCCAGAAGCACCG...AGTCTCTGCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp GACCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTCCAGACACTGTAAGCTaGGAGCATCCCGGTAGTCAC +
Preference number: 4 (lower is better)
Translates to: DQERGQTQLGFFPERLAIPDTVS*EHPGSH
Trigger: GTGACTACCGGGATGCTCTCAGCTTACAGTGTCTGG...AATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTTGCTTCCCAGGATGGTaGGAGGCTGCCCAGCAAACA +
Preference number: 4 (lower is better)
Translates to: PRTGPDSARLLPGETRHFCFPGW*EAAQQT
Trigger: TGTTTGCTGGGCAGCCTCTCACCATCCTGGGAAGCA...AAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGCCCATGAACTCCCCGTaGATCTCCTGGCATTCGCTG +
Preference number: 4 (lower is better)
Translates to: QERGQTQLGFFPERLAILPMNSP*ISWHSL
Trigger: CAGCGAATGCCAGGAGATGCACGGGGAGTTCATGGG...CAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp GGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCCCAAGAACTTGGGCTaGTCCCCGGGGGCAGAGCAT +
Preference number: 4 (lower is better)
Translates to: GPDSARLLPGETRHFVKTPKNLG*SPGAEH
Trigger: ATGCTCTGCCCCCGGGGAGCAGCCCAAGTTCTTGGG...GGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp AGCTGGATGTCCTCCAAACGCACACCGGGAGTGACTGAATGCTTCCATGTGGCACCCAAGAACTTGGGCTaGTCCCCGGGGGCAGAGCAT +
Preference number: 4 (lower is better)
Translates to: SWMSSKRTPGVTECFHVAPKNLG*SPGAEH
Trigger: ATGCTCTGCCCCCGGGGAGCAGCCCAAGTTCTTGGG...TGCCACATGGAAGCATTCAGTCACTCCCGGTGTGCGTTTGGAGGACATCCAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp AGACAAACCCACATTCCAGAGGCCATTCTGGGATCGGAAGCAGGGTCACGTTCATGGGTCCCACTCCCCTaGCGGAAGCACCGTCACCTG +
Preference number: 4 (lower is better)
Translates to: RQTHIPEAILGSEAGSRSWVPLP*RKHRHL
Trigger: CAGGTGACGGTGCTTCCGCCAGGGGAGTGGGACCCA...TGAACGTGACCCTGCTTCCGATCCCAGAATGGCCTCTGGAATGTGGGTTTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp CCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGGCCAGCACCATCATTaGGAAAACAATGGCGGCCGG +
Preference number: 4 (lower is better)
Translates to: PRTGPDSARLLPGETRHFGQHHH*ENNGGR
Trigger: CCGGCCGCCATTGTTTTCCCAATGATGGTGCTGGCC...AAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGCTGGCCTCTGATAGCTaGGGACGCCGTCCGGCTCGT +
Preference number: 4 (lower is better)
Translates to: LGFFPERLAILLKPRTSPLASDS*GRRPAR
Trigger: ACGAGCCGGACGGCGTCCTCAGCTATCAGAGGCCAG...CGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp CCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTTCTCCTGGCATTCGCTaGCTGTCAGGTTTGCCCAGT +
Preference number: 4 (lower is better)
Translates to: PRTGPDSARLLPGETRHFSPGIR*LSGLPS
Trigger: ACTGGGCAAACCTGACAGTCAGCGAATGCCAGGAGA...AAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp TGGGGCTGGGAGTGGGAAAGTCCGGAGCCTCCTGACAAAGCTTCCCAAGTTGCAATCTCATGGTACTGCTaGCCTTTTCCCACTGGGCCC +
Preference number: 4 (lower is better)
Translates to: WGWEWESPEPPDKASQVAISWYC*PFPTGP
Trigger: GGGCCCAGTGGGAAAAGGGCAGCAGTACCATGAGAT...TGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTTCCCACTCCCAGCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp CAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGATCTCATGGTACTGCTaGCCTTTTCCCACTGGGCCC +
Preference number: 4 (lower is better)
Translates to: QERGQTQLGFFPERLAILISWYC*PFPTGP
Trigger: GGGCCCAGTGGGAAAAGGGCAGCAGTACCATGAGAT...CAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGCTCTCTGTTCCCGGATaGCCAAGAACTTGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: QERGQTQLGFFPERLAILLSVPG*PRTWAA
Trigger: AGCAGCCCAAGTTCTTGGGCATCCGGGAACAGAGAG...CAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp GACACTGCACCTACTACACAGGATACAAGGAGAACCCCTGCCTCCCCACTAAGGACTAGCGTGAACAGGTaGACCTTGCGCAGCGGCACG +
Preference number: 4 (lower is better)
Translates to: DTAPTTQDTRRTPASPLRTSVNR*TLRSGT
Trigger: CGTGCCGCTGCGCAAGGTGCACCTGTTCACGCTAGT...CCTTAGTGGGGAGGCAGGGGTTCTCCTTGTATCCTGTGTAGTAGGTGCAGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 72 bp CCGCCTAAGAGAGACCAAGGGCAAAGCCAGGTATGGTaGTGCATGCTTGACCCAGCGGCTGGGAGGCAAGAA +
Preference number: 4 (lower is better)
Translates to: PPKRDQGQSQVW*CMLDPAAGRQE
Trigger: TTCTTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACCATACCTGGCTTTGCCCTTGGTCTCTCTTAGGCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp TGGGGCTGGGAGTGGGAAAGTCCGGAGCCTCCTGACAAAGCTTCCCAAGTTGCACCTCAGTGCCAAGAATaGACTGAACACGCTGAGACG +
Preference number: 4 (lower is better)
Translates to: WGWEWESPEPPDKASQVAPQCQE*TEHAET
Trigger: CGTCTCAGCGTGTTCAGTTCATTCTTGGCACTGAGG...TGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTTCCCACTCCCAGCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp CAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTCTCGTCCAGCTCTGTaGAGAGCTCATGAGGCACAT +
Preference number: 4 (lower is better)
Translates to: QERGQTQLGFFPERLAILSRPAL*RAHEAH
Trigger: ATGTGCCTCATGAGCTCTTCACAGAGCTGGACGAGA...CAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp GGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCAGCGGACGATGGGGATaGGGTTGTTCCTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: GPDSARLLPGETRHFVKTSGRWG*GCSSSS
Trigger: AGAGGAGGAGGAACAACCTCATCCCCATCGTCCGCT...GGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp GGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCAGCTCAAACAGGCTGTaGAGAGAGAGCGTGGCCACG +
Preference number: 4 (lower is better)
Translates to: GPDSARLLPGETRHFVKTSSNRL*RESVAT
Trigger: CGTGGCCACGCTCTCTCTGCACAGCCTGTTTGAGCT...GGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp GAATTTTGGTTTCTTTCACAAAAGGAGAGGTTGCACACTCAGGCTGGTGCCTCGAAGCCCTCCTCGCCCTaGCTGGCTCCTTTGCCCCGC +
Preference number: 4 (lower is better)
Translates to: EFWFLSQKERLHTQAGASKPSSP*LAPLPR
Trigger: GCGGGGCAAAGGAGCCAGCCAGGGCGAGGAGGGCTT...CGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp GAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTACTCTCGTTCTGGTGGTaGTGCTTCTTCAGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: ERGQTQLGFFPERLAILLLSFWW*CFFSRA
Trigger: AGCCCTGCTGAAGAAGCACCACCACCAGAACGAGAG...TAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp TTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACTGGGTCCCACTCCCCTaGCGGAAGCACCGTCACCTG +
Preference number: 4 (lower is better)
Translates to: FFPERLAILLKPRTSPRHWVPLP*RKHRHL
Trigger: CAGGTGACGGTGCTTCCGCCAGGGGAGTGGGACCCA...GTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp GGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAAATCTCGTCCGTCATaGTGGTGGCCATGGACCTGC +
Preference number: 4 (lower is better)
Translates to: GQTQLGFFPERLAILLKPKSRPS*WWPWTC
Trigger: GCAGGTCCATGGCCACCATCATGACGGACGAGATTT...GGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp AGCTGGATGTCCTCCAAACGCACACCGGGAGTGACTGAATGCTTCCATGTGGCACCAGACACTGTAAGCTaGGAGCATCCCGGTAGTCAC +
Preference number: 4 (lower is better)
Translates to: SWMSSKRTPGVTECFHVAPDTVS*EHPGSH
Trigger: GTGACTACCGGGATGCTCTCAGCTTACAGTGTCTGG...TGCCACATGGAAGCATTCAGTCACTCCCGGTGTGCGTTTGGAGGACATCCAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp TGGGGCTGGGAGTGGGAAAGTCCGGAGCCTCCTGACAAAGCTTCCCAAGTTGCAAGCCACAGCCTTTCTTaGGCTTGTGTTCCTTCCTGT +
Preference number: 4 (lower is better)
Translates to: WGWEWESPEPPDKASQVASHSLS*ACVPSC
Trigger: ACAGGAAGGAACACAAGCTCAAGAAAGGCTGTGGCT...TGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTTCCCACTCCCAGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp CAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAGCTTCTGGCCATGAGTaGGGTGGTGCCGATGGCTCT +
Preference number: 4 (lower is better)
Translates to: QTQLGFFPERLAILLKPRASGHE*GGADGS
Trigger: AGAGCCATCGGCACCACCGCACTCATGGCCAGAAGC...TCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp CTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCGGAGCAGCTCCTGCTaGTCCAGGATCAGGTCTGAG +
Preference number: 4 (lower is better)
Translates to: LPGETRHFVKTQNFSEAPRSSSC*SRIRSE
Trigger: CTCAGACCTGATCCTGGACCAGCAGGAGCTGCTCCG...AGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp GGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCCTCTCGTTCTGGTGGTaGTGCTTCTTCAGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: GQTQLGFFPERLAILLKPLSFWW*CFFSRA
Trigger: AGCCCTGCTGAAGAAGCACCACCACCAGAACGAGAG...GGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp GGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCGGAAGCACCGTCACCTaGTCCAGGAACTCGTCAATC +
Preference number: 4 (lower is better)
Translates to: GQTQLGFFPERLAILLKPGSTVT*SRNSSI
Trigger: GATTGACGAGTTCCTGGACCAGGTGACGGTGCTTCC...GGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp GGTTGTGCATGCTTGACCCAGCGGCTGGGAGGCAAGAAAGTTACAGCAAGGTCATTATGCGTCCTTCAGTaGCTTCTCCCAGCAGTCCCC +
Preference number: 4 (lower is better)
Translates to: GCACLTQRLGGKKVTARSLCVLQ*LLPAVP
Trigger: GGGGACTGCTGGGAGAAGCCACTGAAGGACGCATAA...TGACCTTGCTGTAACTTTCTTGCCTCCCAGCCGCTGGGTCAAGCATGCACAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 72 bp TGTCCAGCCCTAGGGGCTTCGTCCCAGGGATGCTTCTaGCTACTGCTGTGCCTTCTCATGTTTGTCACTGCT +
Preference number: 4 (lower is better)
Translates to: CPALGASSQGCF*LLLCLLMFVTA
Trigger: AGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCCTGGGACGAAGCCCCTAGGGCTGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp GGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCCCTCAGTGCCAAGAATaGACTGAACACGCTGAGACG +
Preference number: 4 (lower is better)
Translates to: GQTQLGFFPERLAILLKPPQCQE*TEHAET
Trigger: CGTCTCAGCGTGTTCAGTTCATTCTTGGCACTGAGG...GGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp GACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACAGCGGACGATGGGGATaGGGTTGTTCCTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: DSARLLPGETRHFVKTQNSGRWG*GCSSSS
Trigger: AGAGGAGGAGGAACAACCTCATCCCCATCGTCCGCT...GTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCAGAGACTTCTCCTGGCATTCGCTaGCTGTCAGGTTTGCCCAGT +
Preference number: 4 (lower is better)
Translates to: PRTSPRHLMVQIFHSAETSPGIR*LSGLPS
Trigger: ACTGGGCAAACCTGACAGTCAGCGAATGCCAGGAGA...AGTCTCTGCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp TTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCGCAGGCAGATCCCATaGACTCCCCGTGCATCTCCT +
Preference number: 4 (lower is better)
Translates to: FFPERLAILLKPRTSPRHRRQIP*TPRASP
Trigger: AGGAGATGCACGGGGAGTTCATGGGATCTGCCTGCG...GTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp AGACAAACCCACATTCCAGAGGCCATTCTGGGATCGGAAGCAGGGTCACGTTCAAACACATTGGGAACCTaGAGCTTTGGCGACGGGACG +
Preference number: 4 (lower is better)
Translates to: RQTHIPEAILGSEAGSRSNTLGT*SFGDGT
Trigger: CGTCCCGTCGCCAAAGCTTCAGGTTCCCAATGTGTT...TGAACGTGACCCTGCTTCCGATCCCAGAATGGCCTCTGGAATGTGGGTTTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp CCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACACATTGGGAACCTaGAGCTTTGGCGACGGGACG +
Preference number: 4 (lower is better)
Translates to: PDSARLLPGETRHFVKTQNTLGT*SFGDGT
Trigger: CGTCCCGTCGCCAAAGCTTCAGGTTCCCAATGTGTT...CTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp GACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACAGCTCAAACAGGCTGTaGAGAGAGAGCGTGGCCACG +
Preference number: 4 (lower is better)
Translates to: DSARLLPGETRHFVKTQNSSNRL*RESVAT
Trigger: CGTGGCCACGCTCTCTCTGCACAGCCTGTTTGAGCT...GTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGCTCTCTGTTCCCGGATaGCCAAGAACTTGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: PDSARLLPGETRHFVKTQLSVPG*PRTWAA
Trigger: AGCAGCCCAAGTTCTTGGGCATCCGGGAACAGAGAG...CTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTACTAGCGTGAACAGGTaGACCTTGCGCAGCGGCACG +
Preference number: 4 (lower is better)
Translates to: QLGFFPERLAILLKPRTSTSVNR*TLRSGT
Trigger: CGTGCCGCTGCGCAAGGTGCACCTGTTCACGCTAGT...AGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp GTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCCTCAGGTGGTCCAGCTaGCTGTGCATGTGGATGGGG +
Preference number: 4 (lower is better)
Translates to: VKTQNFSEAPHGPNLPLSLRWSS*LCMWMG
Trigger: CCCCATCCACATGCACAGCCAGCTGGACCACCTGAG...GCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp TTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCGAAGTCACTCACCATaGAGCGGACCCTGGTCGGGA +
Preference number: 4 (lower is better)
Translates to: FFPERLAILLKPRTSPRHRSHSP*SGPWSG
Trigger: TCCCGACCAGGGTCCGCTCCATGGTGAGTGACTTCG...GTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGCGTGCCGCAGGTAGATaGAGTCTGGCTGGTGTTTTG +
Preference number: 4 (lower is better)
Translates to: LGFFPERLAILLKPRTSPRAAGR*SLAGVL
Trigger: CAAAACACCAGCCAGACTTCATCTACCTGCGGCACG...CGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGCAGAAGGGTCACATCTaGAGCTGCTGCTCTTGCCAG +
Preference number: 4 (lower is better)
Translates to: LGFFPERLAILLKPRTSPQKGHI*SCCSCQ
Trigger: CTGGCAAGAGCAGCAGCTTCAGATGTGACCCTTCTG...CGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTGGTCAGACTGCTTCTTaGCAACCTCAGCGAAGGAGC +
Preference number: 4 (lower is better)
Translates to: LPGETRHFVKTQNFSEAPGQTAS*QPQRRS
Trigger: GCTCCTTCGCTGAGGTTGGCAAGAAGCAGTCTGACC...AGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp GGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGATCCACAGGGCTGTaGTCACAGTTCACACCATTC +
Preference number: 4 (lower is better)
Translates to: GQTQLGFFPERLAILLKPRSTGL*SQFTPF
Trigger: GAATGGTGTGAACTGTGAGCACAGCCCTGTGGATCT...GGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCAGAGACTGATGGGGTAGGTCTCTaGCAGGTGGATCAGCTTTTC +
Preference number: 4 (lower is better)
Translates to: PRTSPRHLMVQIFHSAETDGVGL*QVDQLF
Trigger: GAAAAGCTGATCCACCTGGCAGAGACCTACCCCATC...AGTCTCTGCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp TGGATGGTGGAGCTCAGGCAGCAGACCTGCTACTGTGTCTGCCTGTCCAACATCTGGCGAAGAACAGAATaGAGGACCAAAAGAGCACGT +
Preference number: 4 (lower is better)
Translates to: WMVELRQQTCYCVCLSNIWRRTE*RTKRAR
Trigger: ACGTGCTCTTTTGGTCCTGCATTCTGTTCTTCGCCA...GATGTTGGACAGGCAGACACAGTAGCAGGTCTGCTGCCTGAGCTCCACCATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp GAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTATGGCGAAGAACAGAATaGAGGACCAAAAGAGCACGT +
Preference number: 4 (lower is better)
Translates to: ERGQTQLGFFPERLAILLWRRTE*RTKRAR
Trigger: ACGTGCTCTTTTGGTCCTGCATTCTGTTCTTCGCCA...TAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp AGCTGGATGTCCTCCAAACGCACACCGGGAGTGACTGAATGCTTCCATGTGGCAGAGAGCTGGGATAATTaGGGCTATCACAGTCCACCA +
Preference number: 4 (lower is better)
Translates to: SWMSSKRTPGVTECFHVAESWDN*GYHSPP
Trigger: TGGTGGACTGTGATAGCCGCAATTATCCCAGCTCTC...TGCCACATGGAAGCATTCAGTCACTCCCGGTGTGCGTTTGGAGGACATCCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTTACTTAGCAGCTTCCTaGTTTCCAGGGGAAACTTGT +
Preference number: 4 (lower is better)
Translates to: PRTGPDSARLLPGETRHFYLAAS*FPGETC
Trigger: ACAAGTTTCCCCTGGAAAGCAGGAAGCTGCTAAGTA...AAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp CAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGATTATGCGTCCTTCAGTaGCTTCTCCCAGCAGTCCCC +
Preference number: 4 (lower is better)
Translates to: QTQLGFFPERLAILLKPRLCVLQ*LLPAVP
Trigger: GGGGACTGCTGGGAGAAGCCACTGAAGGACGCATAA...TCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp CCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCAGAGACTAGGCAATCCCCGTCATaGACGCTCCAAACAACGACT +
Preference number: 4 (lower is better)
Translates to: PRTSPRHLMVQIFHSAETRQSPS*TLQTTT
Trigger: AGTCGTTGTTTGGAGCGTCCATGACGGGGATTGCCT...AGTCTCTGCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp GTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCGGCTGTGCATGTGGATaGGGTAGGTCTCTGCCAGGT +
Preference number: 4 (lower is better)
Translates to: VKTQNFSEAPHGPNLPLSGCACG*GRSLPG
Trigger: ACCTGGCAGAGACCTACCCCATCCACATGCACAGCC...GCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp GAATTTTGGTTTCTTTCACAAAAGGAGAGGTTGCACACTCAGGCTGGTGCCTCGCTCAGGTGGTCCAGCTaGCTGTGCATGTGGATGGGG +
Preference number: 4 (lower is better)
Translates to: EFWFLSQKERLHTQAGASLRWSS*LCMWMG
Trigger: CCCCATCCACATGCACAGCCAGCTGGACCACCTGAG...CGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp CCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTCAATACTGTAAGGTGTaGTTGTTTGGATTCTCCGGG +
Preference number: 4 (lower is better)
Translates to: PRTGPDSARLLPGETRHFQYCKV*LFGFSG
Trigger: CCCGGAGAATCCAAACAACCACACCTTACAGTATTG...AAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
3UTR CAA 72 bp ACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTaGTTAAAACCCAGAACTTCTCCGAGGCACCTCATG +
Preference number: 4 (lower is better)
Translates to: TQLGFFPERLAI*LKPRTSPRHLM
Trigger: CATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAAGGTTTGTAGCTGACTaGGGAGACACCGTTTGCCCA +
Preference number: 4 (lower is better)
Translates to: QTQLGFFPERLAILLKPRRFVAD*GDTVCP
Trigger: TGGGCAAACGGTGTCTCCTCAGTCAGCTACAAACCT...TCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTAAATCTCGTCCGTCATaGTGGTGGCCATGGACCTGC +
Preference number: 4 (lower is better)
Translates to: QLGFFPERLAILLKPRTSKSRPS*WWPWTC
Trigger: GCAGGTCCATGGCCACCATCATGACGGACGAGATTT...AGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCAGAGACTCGTCCCTTGTTGGCTTaGACACATTGGGAACCTGAA +
Preference number: 4 (lower is better)
Translates to: PRTSPRHLMVQIFHSAETRPLLA*THWEPE
Trigger: TTCAGGTTCCCAATGTGTTCAAGCCAACAAGGGACG...AGTCTCTGCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAAGCTGTCATGAAGACTaGGCAGCCCATCAGCACGAA +
Preference number: 4 (lower is better)
Translates to: QTQLGFFPERLAILLKPRSCHED*AAHQHE
Trigger: TTCGTGCTGATGGGCTGCTCAGTCTTCATGACAGCT...TCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp GTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCCAGAAGGGTCACATCTaGAGCTGCTGCTCTTGCCAG +
Preference number: 4 (lower is better)
Translates to: VKTQNFSEAPHGPNLPLSQKGHI*SCCSCQ
Trigger: CTGGCAAGAGCAGCAGCTTCAGATGTGACCCTTCTG...GCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAGATCCACAGGGCTGTaGTCACAGTTCACACCATTC +
Preference number: 4 (lower is better)
Translates to: PDSARLLPGETRHFVKTQRSTGL*SQFTPF
Trigger: GAATGGTGTGAACTGTGAGCACAGCCCTGTGGATCT...CTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGATGGTGGCCATGGACCTaGCAATCTCATGGTACTGCT +
Preference number: 4 (lower is better)
Translates to: QTQLGFFPERLAILLKPRWWPWT*QSHGTA
Trigger: AGCAGTACCATGAGATTGGCAGGTCCATGGCCACCA...TCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGTGGTGGCCATGGACCTaGCAATCTCATGGTACTGCT +
Preference number: 4 (lower is better)
Translates to: LGFFPERLAILLKPRTSPWWPWT*QSHGTA
Trigger: AGCAGTACCATGAGATTGGCAGGTCCATGGCCACCA...CGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp ACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATAATGGCGGCCGGCGATaGCTTGATGACCCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: TRHFVKTQNFSEAPHGPNNGGRR*LDDPEQ
Trigger: CTGCTCTGGGTCATCAAGGCATCGCCGGCCGCCATT...ATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp GAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTATACTTAGCAGCTTCCTaGTTTCCAGGGGAAACTTGT +
Preference number: 4 (lower is better)
Translates to: ERGQTQLGFFPERLAILLYLAAS*FPGETC
Trigger: ACAAGTTTCCCCTGGAAAGCAGGAAGCTGCTAAGTA...TAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp CTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCACAGCTTCCTCATCTaGCCTCTGATAGCTGAGGAC +
Preference number: 4 (lower is better)
Translates to: LPGETRHFVKTQNFSEAPHSFLI*PLIAED
Trigger: GTCCTCAGCTATCAGAGGCCAGATGAGGAAGCTGTG...AGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp TTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCCTCTCGTTCTGGTaGTGGTGCTTCTTCAGCAGG +
Preference number: 4 (lower is better)
Translates to: FFPERLAILLKPRTSPRHLLSFW*WCFFSR
Trigger: CCTGCTGAAGAAGCACCACCACCAGAACGAGAGGAG...GTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp CCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTAGGGACATTCTTGGGTaGCTCAATTCTAATAGATGG +
Preference number: 4 (lower is better)
Translates to: PRTGPDSARLLPGETRHFRDILG*LNSNRW
Trigger: CCATCTATTAGAATTGAGCCACCCAAGAATGTCCCT...AAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp GGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCGCAGCCAGGATGTTGTaGTCCTTCCAATACTGTAAG +
Preference number: 4 (lower is better)
Translates to: GQTQLGFFPERLAILLKPAARML*SFQYCK
Trigger: CTTACAGTATTGGAAGGACCACAACATCCTGGCTGC...GGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp TTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACTCTCGTCCAGCTCTGTaGAGAGCTCATGAGGCACAT +
Preference number: 4 (lower is better)
Translates to: FFPERLAILLKPRTSPRHSRPAL*RAHEAH
Trigger: ATGTGCCTCATGAGCTCTTCACAGAGCTGGACGAGA...GTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTTTATATGCCACATCATaGAAAATCTCGTCCGTCATG +
Preference number: 4 (lower is better)
Translates to: PRTGPDSARLLPGETRHFLYATS*KISSVM
Trigger: CATGACGGACGAGATTTTTCATGATGTGGCATATAA...AAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGG
51% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTAGCCACAGCCTTTCTTaGGCTTGTGTTCCTTCCTGT +
Preference number: 4 (lower is better)
Translates to: LPGETRHFVKTQNFSEAPSHSLS*ACVPSC
Trigger: ACAGGAAGGAACACAAGCTCAAGAAAGGCTGTGGCT...AGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp AGCCAGTCATGGATGAGGCAAGGCTTCTGGCCAAGGCATTTAATAATAAGGAGTGAGTGCGGGTCAGACTaGTTCTTGCCAACCTCAGCG +
Preference number: 4 (lower is better)
Translates to: SQSWMRQGFWPRHLIIRSECGSD*FLPTSA
Trigger: CGCTGAGGTTGGCAAGAAGCAGTCTGACCCGCACTC...ACTCCTTATTATTAAATGCCTTGGCCAGAAGCCTTGCCTCATCCATGACTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp CAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTTCTCTGTCCATGGAGTaGGGGTCAGACTGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: QLGFFPERLAILLKPRTSSLSME*GSDCFL
Trigger: CAAGAAGCAGTCTGACCCGCACTCCATGGACAGAGA...AGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAGTGAAGATCCACCTTaGTTAGATCCACAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: PDSARLLPGETRHFVKTQSEDPP*LDPQGC
Trigger: ACAGCCCTGTGGATCTAAGCAAGGTGGATCTTCACT...CTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp TTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACGATGGGGTAGGTCTCTaGCAGGTGGATCAGCTTTTC +
Preference number: 4 (lower is better)
Translates to: FFPERLAILLKPRTSPRHDGVGL*QVDQLF
Trigger: GAAAAGCTGATCCACCTGGCAGAGACCTACCCCATC...GTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp ACCCAGTGCGTTAACTGGGAGAAAGACAGTACTTTGCAGCAGAAGAGTGAATCACCCATGAACTCCCCGTaGATCTCCTGGCATTCGCTG +
Preference number: 4 (lower is better)
Translates to: TQCVNWEKDSTLQQKSESPMNSP*ISWHSL
Trigger: CAGCGAATGCCAGGAGATGCACGGGGAGTTCATGGG...TGATTCACTCTTCTGCTGCAAAGTACTGTCTTTCTCCCAGTTAACGCACTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp CAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAGTCTGGCTGGTGTTTTaGAGGCATCCCGAAAAGCTT +
Preference number: 4 (lower is better)
Translates to: QTQLGFFPERLAILLKPRVWLVF*RHPEKL
Trigger: AAGCTTTTCGGGATGCCTGCAAAACACCAGCCAGAC...TCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTGTCTGGCTGGTGTTTTaGAGGCATCCCGAAAAGCTT +
Preference number: 4 (lower is better)
Translates to: LPGETRHFVKTQNFSEAPVWLVF*RHPEKL
Trigger: AAGCTTTTCGGGATGCCTGCAAAACACCAGCCAGAC...AGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp GTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCAGGCAATCCCCGTCATaGACGCTCCAAACAACGACT +
Preference number: 4 (lower is better)
Translates to: VKTQNFSEAPHGPNLPLSRQSPS*TLQTTT
Trigger: AGTCGTTGTTTGGAGCGTCCATGACGGGGATTGCCT...GCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp CCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGGCAGCCAGGATGTTGTaGTCCTTCCAATACTGTAAG +
Preference number: 4 (lower is better)
Translates to: PDSARLLPGETRHFVKTQAARML*SFQYCK
Trigger: CTTACAGTATTGGAAGGACCACAACATCCTGGCTGC...CTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp ATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACCGAAGTCACTCACCATaGAGCGGACCCTGGTCGGGA +
Preference number: 4 (lower is better)
Translates to: ILLKPRTSPRHLMVQIFHRSHSP*SGPWSG
Trigger: TCCCGACCAGGGTCCGCTCCATGGTGAGTGACTTCG...GTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp GGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCACAGCGGTGATCTGCTaGTCCATGAATATCAGGATA +
Preference number: 4 (lower is better)
Translates to: GPDSARLLPGETRHFVKTTAVIC*SMNIRI
Trigger: TATCCTGATATTCATGGACCAGCAGATCACCGCTGT...GGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp TTCACGTCCTCAAGGAAAAGGTTATTGTTAGTATTTATGTCGAGCTTCCCAGTTCTGGCCTCTGATAGCTaGGGACGCCGTCCGGCTCGT +
Preference number: 4 (lower is better)
Translates to: FTSSRKRLLLVFMSSFPVLASDS*GRRPAR
Trigger: ACGAGCCGGACGGCGTCCTCAGCTATCAGAGGCCAG...AACTGGGAAGCTCGACATAAATACTAACAATAACCTTTTCCTTGAGGACGTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161564.2
CDS-3UTR TCA 90 bp GAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAACATACAGAGTTCTATaGCCTTCCAACTCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: ERGQTQLGFFPERLAILLTYRVL*PSNSSF
Trigger: GAAAGAAGAGTTGGAAGGTCATAGAACTCTGTATGT...TAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp CAGTCATGGATGAGGCAAGGCTTCTGGCCAAGGCATTTAATAATAAGGAGTCTTTGCTTCCCAGGATGGTaGGAGGCTGCCCAGCAAACA +
Preference number: 4 (lower is better)
Translates to: QSWMRQGFWPRHLIIRSLCFPGW*EAAQQT
Trigger: TGTTTGCTGGGCAGCCTCTCACCATCCTGGGAAGCA...AAGACTCCTTATTATTAAATGCCTTGGCCAGAAGCCTTGCCTCATCCATGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp GAATTTTGGTTTCTTTCACAAAAGGAGAGGTTGCACACTCAGGCTGGTGCCTCGAGCTGTCATGAAGACTaGGCAGCCCATCAGCACGAA +
Preference number: 4 (lower is better)
Translates to: EFWFLSQKERLHTQAGASSCHED*AAHQHE
Trigger: TTCGTGCTGATGGGCTGCTCAGTCTTCATGACAGCT...CGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp GACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTAAGACAGCTGTCATaGAGACTGAGCAGCCCATCA +
Preference number: 4 (lower is better)
Translates to: DSARLLPGETRHFVKTQNLRQLS*RLSSPS
Trigger: TGATGGGCTGCTCAGTCTTCATGACAGCTGTCTTAA...GTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGTTAAGACAGCTGTCATaGAGACTGAGCAGCCCATCA +
Preference number: 4 (lower is better)
Translates to: LGFFPERLAILLKPRTSPLRQLS*RLSSPS
Trigger: TGATGGGCTGCTCAGTCTTCATGACAGCTGTCTTAA...CGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp CATGAGAAGGAAGGTCATGAACGAAGAGCAGGGGACTTCACTGTGTATGTAAGACGTGCCGCAGGTAGATaGAGTCTGGCTGGTGTTTTG +
Preference number: 4 (lower is better)
Translates to: HEKEGHERRAGDFTVYVRRAAGR*SLAGVL
Trigger: CAAAACACCAGCCAGACTTCATCTACCTGCGGCACG...TCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp CATGAGAAGGAAGGTCATGAACGAAGAGCAGGGGACTTCACTGTGTATGTAAGAGGTCAGACTGCTTCTTaGCAACCTCAGCGAAGGAGC +
Preference number: 4 (lower is better)
Translates to: HEKEGHERRAGDFTVYVRGQTAS*QPQRRS
Trigger: GCTCCTTCGCTGAGGTTGGCAAGAAGCAGTCTGACC...TCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp GACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACAGTGAAGATCCACCTTaGTTAGATCCACAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: DSARLLPGETRHFVKTQNSEDPP*LDPQGC
Trigger: ACAGCCCTGTGGATCTAAGCAAGGTGGATCTTCACT...GTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp CATGAGAAGGAAGGTCATGAACGAAGAGCAGGGGACTTCACTGTGTATGTAAGACTCCTCTCGTTCTGGTaGTGGTGCTTCTTCAGCAGG +
Preference number: 4 (lower is better)
Translates to: HEKEGHERRAGDFTVYVRLLSFW*WCFFSR
Trigger: CCTGCTGAAGAAGCACCACCACCAGAACGAGAGGAG...TCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp GACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACGCAAACGTTTCCGTTTaGAACACCGGGCATTTTCCT +
Preference number: 4 (lower is better)
Translates to: DSARLLPGETRHFVKTQNANVSV*NTGHFP
Trigger: AGGAAAATGCCCGGTGTTCCAAACGGAAACGTTTGC...GTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp CCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGCAATACTGTAAGGTGTaGTTGTTTGGATTCTCCGGG +
Preference number: 4 (lower is better)
Translates to: PDSARLLPGETRHFVKTQQYCKV*LFGFSG
Trigger: CCCGGAGAATCCAAACAACCACACCTTACAGTATTG...CTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp TTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACTTGAGGCTGTTCACATaGGTAATGGACAGGACGGTC +
Preference number: 4 (lower is better)
Translates to: FFPERLAILLKPRTSPRHLRLFT*VMDRTV
Trigger: GACCGTCCTGTCCATTACCCATGTGAACAGCCTCAA...GTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
3UTR CAA 72 bp GGGAAAGTCCGGAGCCTCCTGACAAAGCTTCCCAAGTaGCATGTGTTATGCAACCAAACACACTTGGCACTT +
Preference number: 4 (lower is better)
Translates to: GKVRSLLTKLPK*HVLCNQTHLAL
Trigger: AAGTGCCAAGTGTGTTTGGTTGCATAACACATGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 72 bp GGGAGAGAGATGCAAATTAATGCAGGTGATAGAGGCTaGTTCGGCTGCTACTGTTTCCCTGTCCCAGAGACA +
Preference number: 4 (lower is better)
Translates to: GREMQINAGDRG*FGCYCFPVPET
Trigger: TGTCTCTGGGACAGGGAAACAGTAGCAGCCGAACAAGCCTCTATCACCTGCATTAATTTGCATCTCTCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 72 bp GGGAGGCAAGAAAGTTACAGCAAGGTCAAGGCTAGCTaGCTCTACACAGTGAGACCCTGCCTTGAAAAACCA +
Preference number: 4 (lower is better)
Translates to: GRQESYSKVKAS*LYTVRPCLEKP
Trigger: TGGTTTTTCAAGGCAGGGTCTCACTGTGTAGAGCAAGCTAGCCTTGACCTTGCTGTAACTTTCTTGCCTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp CAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGATCTGTGAAGAGCTCATaGGGCACATGTTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: QTQLGFFPERLAILLKPRSVKSS*GTCSSS
Trigger: AGATGAAGAACATGTGCCTCATGAGCTCTTCACAGA...TCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR GCA 90 bp CATGAGAAGGAAGGTCATGAACGAAGAGCAGGGGACTTCACTGTGTATGTAAGATCTCTGTCCATGGAGTaGGGGTCAGACTGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: HEKEGHERRAGDFTVYVRSLSME*GSDCFL
Trigger: CAAGAAGCAGTCTGACCCGCACTCCATGGACAGAGA...TCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp ACCCAGTGCGTTAACTGGGAGAAAGACAGTACTTTGCAGCAGAAGAGTGAATCACTCAATTCTAATAGATaGGTCCCACTCCCCTGGCGG +
Preference number: 4 (lower is better)
Translates to: TQCVNWEKDSTLQQKSESLNSNR*VPLPWR
Trigger: CCGCCAGGGGAGTGGGACCCATCTATTAGAATTGAG...TGATTCACTCTTCTGCTGCAAAGTACTGTCTTTCTCCCAGTTAACGCACTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp CCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAGGGACATTCTTGGGTaGCTCAATTCTAATAGATGG +
Preference number: 4 (lower is better)
Translates to: PDSARLLPGETRHFVKTQRDILG*LNSNRW
Trigger: CCATCTATTAGAATTGAGCCACCCAAGAATGTCCCT...CTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp CAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTGCAAACGTTTCCGTTTaGAACACCGGGCATTTTCCT +
Preference number: 4 (lower is better)
Translates to: QLGFFPERLAILLKPRTSANVSV*NTGHFP
Trigger: AGGAAAATGCCCGGTGTTCCAAACGGAAACGTTTGC...AGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
3UTR CAA 72 bp GCTCCATCACCGACAATGAGAAACCGCAACTGTCTTTaGGAGAGAGATGGTTCACTTTCCCTCTATCGGGAA +
Preference number: 4 (lower is better)
Translates to: APSPTMRNRNCL*ERDGSLSLYRE
Trigger: TTCCCGATAGAGGGAAAGTGAACCATCTCTCTCCAAAAGACAGTTGCGGTTTCTCATTGTCGGTGATGGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 72 bp CAGGAAGAATTTTGGTTTCTTTCACAAAAGGAGAGGTaGCACACTCAGGCTGGTGCCTCGCACTGTTGCACA +
Preference number: 4 (lower is better)
Translates to: QEEFWFLSQKER*HTQAGASHCCT
Trigger: TGTGCAACAGTGCGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTCTTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 72 bp AAGTCACCTGCCCCGGGGCCTCATGTCTACCATACATaGTTACAGGGTGATCACAATTGCACATCTTATTCC +
Preference number: 4 (lower is better)
Translates to: KSPAPGPHVYHT*LQGDHNCTSYS
Trigger: GGAATAAGATGTGCAATTGTGATCACCCTGTAACAATGTATGGTAGACATGAGGCCCCGGGGCAGGTGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp TTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACTCTGTGAAGAGCTCATaGGGCACATGTTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: FFPERLAILLKPRTSPRHSVKSS*GTCSSS
Trigger: AGATGAAGAACATGTGCCTCATGAGCTCTTCACAGA...GTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp ATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACAGGTTTGTAGCTGACTaGGGAGACACCGTTTGCCCA +
Preference number: 4 (lower is better)
Translates to: ILLKPRTSPRHLMVQIFHRFVAD*GDTVCP
Trigger: TGGGCAAACGGTGTCTCCTCAGTCAGCTACAAACCT...GTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR TCA 90 bp AGCCAGTCATGGATGAGGCAAGGCTTCTGGCCAAGGCATTTAATAATAAGGAGTCGTCCCTTGTTGGCTTaGACACATTGGGAACCTGAA +
Preference number: 4 (lower is better)
Translates to: SQSWMRQGFWPRHLIIRSRPLLA*THWEPE
Trigger: TTCAGGTTCCCAATGTGTTCAAGCCAACAAGGGACG...ACTCCTTATTATTAAATGCCTTGGCCAGAAGCCTTGCCTCATCCATGACTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp TACCAAGAGTCATTTTTATCTACAGTAGAAAGTTTGCCTCTATTTGGCCTCTGGAGTTCTGGCCCACTGTaGCCCCCATGTGGCTCTGGT +
Preference number: 4 (lower is better)
Translates to: YQESFLSTVESLPLFGLWSSGPL*PPCGSG
Trigger: ACCAGAGCCACATGGGGGGCACAGTGGGCCAGAACT...CCAGAGGCCAAATAGAGGCAAACTTTCTACTGTAGATAAAAATGACTCTTGGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp CATGAGAAGGAAGGTCATGAACGAAGAGCAGGGGACTTCACTGTGTATGTAAGAGAGAGCTGGGATAATTaGGGCTATCACAGTCCACCA +
Preference number: 4 (lower is better)
Translates to: HEKEGHERRAGDFTVYVRESWDN*GYHSPP
Trigger: TGGTGGACTGTGATAGCCGCAATTATCCCAGCTCTC...TCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp GAAAAAGACCACCTCATTTATAAAGATTATACAGGGCTTCTGAGAAGCCTTCACAATGGCGGCCGGCGATaGCTTGATGACCCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: EKDHLIYKDYTGLLRSLHNGGRR*LDDPEQ
Trigger: CTGCTCTGGGTCATCAAGGCATCGCCGGCCGCCATT...GTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTGGTCTTTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp ATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACCTCAATTCTAATAGATaGGTCCCACTCCCCTGGCGG +
Preference number: 4 (lower is better)
Translates to: ILLKPRTSPRHLMVQIFHLNSNR*VPLPWR
Trigger: CCGCCAGGGGAGTGGGACCCATCTATTAGAATTGAG...GTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp GTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCACAGCGGTGATCTGCTaGTCCATGAATATCAGGATA +
Preference number: 4 (lower is better)
Translates to: VKTQNFSEAPHGPNLPLSTAVIC*SMNIRI
Trigger: TATCCTGATATTCATGGACCAGCAGATCACCGCTGT...GCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp CATGAGAAGGAAGGTCATGAACGAAGAGCAGGGGACTTCACTGTGTATGTAAGATTGAGGCTGTTCACATaGGTAATGGACAGGACGGTC +
Preference number: 4 (lower is better)
Translates to: HEKEGHERRAGDFTVYVRLRLFT*VMDRTV
Trigger: GACCGTCCTGTCCATTACCCATGTGAACAGCCTCAA...TCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp GAGTATTTCACGTCCTCAAGGAAAAGGTTATTGTTAGTATTTATGTCGAGCTTCGTGCTGGTCCCACCCTaGTCCACCACAGCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: EYFTSSRKRLLLVFMSSFVLVPP*STTASS
Trigger: TGAGGAAGCTGTGGTGGATCAGGGTGGGACCAGCAC...GAAGCTCGACATAAATACTAACAATAACCTTTTCCTTGAGGACGTGAAATACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161564.2
CDS-3UTR CCA 90 bp GAAAAAGACCACCTCATTTATAAAGATTATACAGGGCTTCTGAGAAGCCTTCACGGCTGTGCATGTGGATaGGGTAGGTCTCTGCCAGGT +
Preference number: 4 (lower is better)
Translates to: EKDHLIYKDYTGLLRSLHGCACG*GRSLPG
Trigger: ACCTGGCAGAGACCTACCCCATCCACATGCACAGCC...GTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTGGTCTTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 72 bp ACCGGCTCTGTGTGGCTCGTGTCTGTCCTGTATCAATaGTCAAATATCTTGCATCAATATGGCAGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: TGSVWLVSVLYQ*SNILHQYGSGP
Trigger: AGGACCACTGCCATATTGATGCAAGATATTTGACAATTGATACAGGACAGACACGAGCCACACAGAGCCGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 72 bp TTGGGTACAAACGAGCTGAAGGAGAAAACAAAGTTGTaGGAGCTTGCCTTGCTTCAGCCACTCAGTGTAGGA +
Preference number: 4 (lower is better)
Translates to: LGTNELKEKTKL*ELALLQPLSVG
Trigger: TCCTACACTGAGTGGCTGAAGCAAGGCAAGCTCCAACAACTTTGTTTTCTCCTTCAGCTCGTTTGTACCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CCA 90 bp GAAAAAGACCACCTCATTTATAAAGATTATACAGGGCTTCTGAGAAGCCTTCACGGAAGCACCGTCACCTaGTCCAGGAACTCGTCAATC +
Preference number: 4 (lower is better)
Translates to: EKDHLIYKDYTGLLRSLHGSTVT*SRNSSI
Trigger: GATTGACGAGTTCCTGGACCAGGTGACGGTGCTTCC...GTGAAGGCTTCTCAGAAGCCCTGTATAATCTTTATAAATGAGGTGGTCTTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 72 bp AAAGAAGAAAGGAATTTAGATACAGGGGTGTCTCTCTaGATCTCGATCTCTCTCTCTCTCTCCCTCTCCCTC +
Preference number: 4 (lower is better)
Translates to: KEERNLDTGVSL*ISISLSLSLSL
Trigger: GAGGGAGAGGGAGAGAGAGAGAGAGATCGAGATCAAGAGAGACACCCCTGTATCTAAATTCCTTTCTTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 72 bp CTTTTGGGTACAAACGAGCTGAAGGAGAAAACAAAGTaGTTGGAGCTTGCCTTGCTTCAGCCACTCAGTGTA +
Preference number: 4 (lower is better)
Translates to: LLGTNELKEKTK*LELALLQPLSV
Trigger: TACACTGAGTGGCTGAAGCAAGGCAAGCTCCAACAACTTTGTTTTCTCCTTCAGCTCGTTTGTACCCAAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp TTTCTTCGTGTGGCTTTTACACCTGAGCCAGAACTTGTCAACCAAAAGAAACCCTCTCATAGTGAATGTTaGGAATTGTGCTGGTCCCAC +
Preference number: 4 (lower is better)
Translates to: FLRVAFTPEPELVNQKKPSHSEC*ELCWSH
Trigger: GTGGGACCAGCACAATTCTCAACATTCACTATGAGA...GGGTTTCTTTTGGTTGACAAGTTCTGGCTCAGGTGTAAAAGCCACACGAAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR TCA 90 bp AATGAGTATTTCACGTCCTCAAGGAAAAGGTTATTGTTAGTATTTATGTCGAGCAGGTCTCTGATGAGCTaGCTGGACGGGTGGGGTTCA +
Preference number: 4 (lower is better)
Translates to: NEYFTSSRKRLLLVFMSSRSLMS*LDGWGS
Trigger: TGAACCCCACCCGTCCAGTCAGCTCATCAGAGACCT...GCTCGACATAAATACTAACAATAACCTTTTCCTTGAGGACGTGAAATACTCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161564.2
CDS-3UTR GCA 90 bp ACCCAGTGCGTTAACTGGGAGAAAGACAGTACTTTGCAGCAGAAGAGTGAATCAGTCATCGCGTTCCTTTaGTTTATATGCCACATCATG +
Preference number: 4 (lower is better)
Translates to: TQCVNWEKDSTLQQKSESVIAFL*FICHIM
Trigger: CATGATGTGGCATATAAAGCAAAGGAACGCGATGAC...TGATTCACTCTTCTGCTGCAAAGTACTGTCTTTCTCCCAGTTAACGCACTGGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR GCA 90 bp ACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATGTCATCGCGTTCCTTTaGTTTATATGCCACATCATG +
Preference number: 4 (lower is better)
Translates to: TRHFVKTQNFSEAPHGPNVIAFL*FICHIM
Trigger: CATGATGTGGCATATAAAGCAAAGGAACGCGATGAC...ATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CCA 90 bp AAGGAAAAGGTTATTGTTAGTATTTATGTCGAGCTTCCCAGTTCTCTGAGCACTCACAGCTTCCTCATCTaGCCTCTGATAGCTGAGGAC +
Preference number: 4 (lower is better)
Translates to: KEKVIVSIYVELPSSLSTHSFLI*PLIAED
Trigger: GTCCTCAGCTATCAGAGGCCAGATGAGGAAGCTGTG...AGTGCTCAGAGAACTGGGAAGCTCGACATAAATACTAACAATAACCTTTTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161564.2
3UTR CAA 72 bp GTTCAATCACATAATATTACTACTGAACAATGTTGCTaGGTGGCTTTAAAACTTGGGACAAATTTGAGGGGC +
Preference number: 4 (lower is better)
Translates to: VQSHNITTEQCC*VALKLGTNLRG
Trigger: GCCCCTCAAATTTGTCCCAAGTTTTAAAGCCACCAAGCAACATTGTTCAGTAGTAATATTATGTGATTGAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
3UTR CAA 72 bp AGATACCAAGAGTCATTTTTATCTACAGTAGAAAGTTaGCCTCTATTTGGCCTCTGGACGTGTTTTTCTGTT +
Preference number: 4 (lower is better)
Translates to: RYQESFLSTVES*PLFGLWTCFSV
Trigger: AACAGAAAAACACGTCCAGAGGCCAAATAGAGGCAAACTTTCTACTGTAGATAAAAATGACTCTTGGTATCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS TCA 90 bp CTGGCTCCTTTGCCCCGCCCTCCTCGTCTCCGGTGCTTCTGGCCATaGGTGCGGTGGTGCCGATGGCTCTGCCTCCCCAGCGGCATCCGA +
Preference number: 5 (lower is better)
Translates to: LAPLPRPPRLRCFWP*VRWCRWLCLPSGIR
Trigger: TCGGATGCCGCTGGGGAGGCAGAGCCATCGGCACCACCGCACTCATGGCCAGAAGCACCGGAGACGAGGAGGGCGGGGCAAAGGAGCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS GCA 90 bp CTCCTTTGCCCCGCCCTCCTCGTCTCCGGTGCTTCTGGCCATGAGTaGGGTGGTGCCGATGGCTCTGCCTCCCCAGCGGCATCCGAACCC +
Preference number: 5 (lower is better)
Translates to: LLCPALLVSGASGHE*GGADGSASPAASEP
Trigger: GGGTTCGGATGCCGCTGGGGAGGCAGAGCCATCGGCACCACCGCACTCATGGCCAGAAGCACCGGAGACGAGGAGGGCGGGGCAAAGGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS GCA 90 bp CGTGGGCCAAGGCTTCCAAGCCCTCCTCGCCCTGGCTGGCTCCTTTaGCCCGCCCTCCTCGTCTCCGGTGCTTCTGGCCATGAGTGCGGT +
Preference number: 5 (lower is better)
Translates to: RGPRLPSPPRPGWLL*PALLVSGASGHECG
Trigger: ACCGCACTCATGGCCAGAAGCACCGGAGACGAGGAGGGCGGGGCAAAGGAGCCAGCCAGGGCGAGGAGGGCTTGGAAGCCTTGGCCCACG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 90 bp ACGGGGTGTCGTGGGCCAAGGCTTCCAAGCCCTCCTCGCCCTGGCTaGCTCCTTTGCCCCGCCCTCCTCGTCTCCGGTGCTTCTGGCCAT +
Preference number: 5 (lower is better)
Translates to: TGCRGPRLPSPPRPG*LLCPALLVSGASGH
Trigger: ATGGCCAGAAGCACCGGAGACGAGGAGGGCGGGGCAAAGGAGCCAGCCAGGGCGAGGAGGGCTTGGAAGCCTTGGCCCACGACACCCCGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 90 bp GGCCAGAGAGCAGCACAGCCGGGGAGAGCCTCACGAAGGCCACGATaGGCCGGTCCAGCGTATCCACCTCTCCCACCAGGACATTGGAGG +
Preference number: 5 (lower is better)
Translates to: GQRAAQPGRASRRPR*AGPAYPPLPPGHWR
Trigger: CCTCCAATGTCCTGGTGGGAGAGGTGGATACGCTGGACCGGCCCATCGTGGCCTTCGTGAGGCTCTCCCCGGCTGTGCTGCTCTCTGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGGCGGCCGGCGATGCCTaGATGACCCAGAGCAGGACG +
Preference number: 5 (lower is better)
Translates to: QERGQTQLGFFPERLAILAAGDA*MTQSRT
Trigger: CGTCCTGCTCTGGGTCATCAAGGCATCGCCGGCCGC...CAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp GGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCCCCTGGCTGGCTCCTTaGCCCCGCCCTCCTCGTCTC +
Preference number: 5 (lower is better)
Translates to: GQTQLGFFPERLAILLKPPWLAP*PRPPRL
Trigger: GAGACGAGGAGGGCGGGGCAAAGGAGCCAGCCAGGG...GGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCC
62% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp AATCGAGAACAGAGTGTGGCCCTTTCTCATAGACTGGCACAGGTGAGGGCGCCAGCGGCCGGCGATGCCTaGATGACCCAGAGCAGGACG +
Preference number: 5 (lower is better)
Translates to: NREQSVALSHRLAQVRAPAAGDA*MTQSRT
Trigger: CGTCCTGCTCTGGGTCATCAAGGCATCGCCGGCCGC...TGGCGCCCTCACCTGTGCCAGTCTATGAGAAAGGGCCACACTCTGTTCTCGATT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS GCA 90 bp GGAGACACCGTTTGCCCATCTCTGTCCATGGAGTGCGGGTCAGACTaGTTCTTGCCAACCTCAGCGAAGGAGCGGACGATGGGGATGAGG +
Preference number: 5 (lower is better)
Translates to: GDTVCPSLSMECGSD*FLPTSAKERTMGMR
Trigger: CCTCATCCCCATCGTCCGCTCCTTCGCTGAGGTTGGCAAGAAGCAGTCTGACCCGCACTCCATGGACAGAGATGGGCAAACGGTGTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 90 bp AAGCCCCCAAACAGCCGCCCAGTCCGCTCCAGTTCTGGCCCACTGTaGCCCCCATGTGGCTCTGGTTCTATGTGGCAAACGTTTCCGTTT +
Preference number: 5 (lower is better)
Translates to: KPPNSRPVRSSSGPL*PPCGSGSMWQTFPF
Trigger: AAACGGAAACGTTTGCCACATAGAACCAGAGCCACATGGGGGGCACAGTGGGCCAGAACTGGAGCGGACTGGGCGGCTGTTTGGGGGCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGCCCTGGCTGGCTCCTTaGCCCCGCCCTCCTCGTCTC +
Preference number: 5 (lower is better)
Translates to: LGFFPERLAILLKPRTSPPWLAP*PRPPRL
Trigger: GAGACGAGGAGGGCGGGGCAAAGGAGCCAGCCAGGG...CGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 90 bp ATAAGCCCTGTGACTCTCTGTTCCCGGATGCCCAAGAACTTGGGCTaGTCCCCGGGGGCAGAGCATTCGGATTCCAGCTTGAGGCTGTTC +
Preference number: 5 (lower is better)
Translates to: ISPVTLCSRMPKNLG*SPGAEHSDSSLRLF
Trigger: GAACAGCCTCAAGCTGGAATCCGAATGCTCTGCCCCCGGGGAGCAGCCCAAGTTCTTGGGCATCCGGGAACAGAGAGTCACAGGGCTTAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 90 bp GAGCGGACGATGGGGATGAGGTTGTTCCTCCTCCTCTCGTTCTGGTaGTGGTGCTTCTTCAGCAGGGCTTCCCGCACTTTAACCCTCACG +
Preference number: 5 (lower is better)
Translates to: ERTMGMRLFLLLSFW*WCFFSRASRTLTLT
Trigger: CGTGAGGGTTAAAGTGCGGGAAGCCCTGCTGAAGAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCATCGTCCGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 90 bp ATTCTAATAGATGGGTCCCACTCCCCTGGCGGAAGCACCGTCACCTaGTCCAGGAACTCGTCAATCCCTGCCAGGAGGTCATCGCGTTCC +
Preference number: 5 (lower is better)
Translates to: ILIDGSHSPGGSTVT*SRNSSIPARRSSRS
Trigger: GGAACGCGATGACCTCCTGGCAGGGATTGACGAGTTCCTGGACCAGGTGACGGTGCTTCCGCCAGGGGAGTGGGACCCATCTATTAGAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTAGAAGCACAGAGCCGTaGATGAGGCAGCTCCTCAGC +
Preference number: 5 (lower is better)
Translates to: PRTGPDSARLLPGETRHFRSTEP*MRQLLS
Trigger: GCTGAGGAGCTGCCTCATCAACGGCTCTGTGCTTCT...AAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp TGGGGCTGGGAGTGGGAAAGTCCGGAGCCTCCTGACAAAGCTTCCCAAGTTGCAGGGTCAGACTGCTTCTaGCCAACCTCAGCGAAGGAG +
Preference number: 5 (lower is better)
Translates to: WGWEWESPEPPDKASQVAGSDCF*PTSAKE
Trigger: CTCCTTCGCTGAGGTTGGCAAGAAGCAGTCTGACCC...TGCAACTTGGGAAGCTTTGTCAGGAGGCTCCGGACTTTCCCACTCCCAGCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS GCA 90 bp ACGATGGGGATGAGGTTGTTCCTCCTCCTCTCGTTCTGGTGGTGGTaGTTCTTCAGCAGGGCTTCCCGCACTTTAACCCTCACGCTGTCG +
Preference number: 5 (lower is better)
Translates to: TMGMRLFLLLSFWWW*FFSRASRTLTLTLS
Trigger: CGACAGCGTGAGGGTTAAAGTGCGGGAAGCCCTGCTGAAGAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCATCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 90 bp AAGGAGCGGACGATGGGGATGAGGTTGTTCCTCCTCCTCTCGTTCTaGTGGTGGTGCTTCTTCAGCAGGGCTTCCCGCACTTTAACCCTC +
Preference number: 5 (lower is better)
Translates to: KERTMGMRLFLLLSF*WWCFFSRASRTLTL
Trigger: GAGGGTTAAAGTGCGGGAAGCCCTGCTGAAGAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCATCGTCCGCTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTACGATGGGGATGAGGTaGTTCCTCCTCCTCTCGTTC +
Preference number: 5 (lower is better)
Translates to: PRTGPDSARLLPGETRHFTMGMR*FLLLSF
Trigger: GAACGAGAGGAGGAGGAACAACCTCATCCCCATCGT...AAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 90 bp CAGACTGCTTCTTGCCAACCTCAGCGAAGGAGCGGACGATGGGGATaGGGTTGTTCCTCCTCCTCTCGTTCTGGTGGTGGTGCTTCTTCA +
Preference number: 5 (lower is better)
Translates to: QTASCQPQRRSGRWG*GCSSSSRSGGGASS
Trigger: TGAAGAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCATCGTCCGCTCCTTCGCTGAGGTTGGCAAGAAGCAGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 90 bp CGCACTTTAACCCTCACGCTGTCGCTCAGGTCTCGGAGCAGCTCCTaGTGGTCCAGGATCAGGTCTGAGATCTCCTCTATGCTACTTGCA +
Preference number: 5 (lower is better)
Translates to: RTLTLTLSLRSRSSS*WSRIRSEISSMLLA
Trigger: TGCAAGTAGCATAGAGGAGATCTCAGACCTGATCCTGGACCAGCAGGAGCTGCTCCGAGACCTGAGCGACAGCGTGAGGGTTAAAGTGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 90 bp ACTTTAACCCTCACGCTGTCGCTCAGGTCTCGGAGCAGCTCCTGCTaGTCCAGGATCAGGTCTGAGATCTCCTCTATGCTACTTGCACGC +
Preference number: 5 (lower is better)
Translates to: TLTLTLSLRSRSSSC*SRIRSEISSMLLAR
Trigger: GCGTGCAAGTAGCATAGAGGAGATCTCAGACCTGATCCTGGACCAGCAGGAGCTGCTCCGAGACCTGAGCGACAGCGTGAGGGTTAAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 90 bp GACATTCTTGGGTGGCTCAATTCTAATAGATGGGTCCCACTCCCCTaGCGGAAGCACCGTCACCTGGTCCAGGAACTCGTCAATCCCTGC +
Preference number: 5 (lower is better)
Translates to: DILGWLNSNRWVPLP*RKHRHLVQELVNPC
Trigger: GCAGGGATTGACGAGTTCCTGGACCAGGTGACGGTGCTTCCGCCAGGGGAGTGGGACCCATCTATTAGAATTGAGCCACCCAAGAATGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp GGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCGGGTCAGACTGCTTCTaGCCAACCTCAGCGAAGGAG +
Preference number: 5 (lower is better)
Translates to: GQTQLGFFPERLAILLKPGSDCF*PTSAKE
Trigger: CTCCTTCGCTGAGGTTGGCAAGAAGCAGTCTGACCC...GGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCAGGGAGCCTTCCGCTaGACATCCAGCACCAAGCCC +
Preference number: 5 (lower is better)
Translates to: LPGETRHFVKTQNFSEAPQGAFR*TSSTKP
Trigger: GGGCTTGGTGCTGGATGTCAAGCGGAAGGCTCCCTG...AGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp GGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCAGGCCAGCACCATCATaGGGAAAACAATGGCGGCCG +
Preference number: 5 (lower is better)
Translates to: GPDSARLLPGETRHFVKTRPAPS*GKQWRP
Trigger: CGGCCGCCATTGTTTTCCCAATGATGGTGCTGGCCT...GGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp GGGATGCTTCTTGCTACTGCTGTGCCTTCTCATGTTTGTCACTGCTATATCCCTCAGGGAGCCTTCCGCTaGACATCCAGCACCAAGCCC +
Preference number: 5 (lower is better)
Translates to: GMLLATAVPSHVCHCYIPQGAFR*TSSTKP
Trigger: GGGCTTGGTGCTGGATGTCAAGCGGAAGGCTCCCTG...AGGGATATAGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CAA 90 bp TGGATGGTGGAGCTCAGGCAGCAGACCTGCTACTGTGTCTGCCTGTCCAACATCTACTGTAAGGTGTGGTaGTTTGGATTCTCCGGGAGC +
Preference number: 5 (lower is better)
Translates to: WMVELRQQTCYCVCLSNIYCKVW*FGFSGS
Trigger: GCTCCCGGAGAATCCAAACAACCACACCTTACAGTA...GATGTTGGACAGGCAGACACAGTAGCAGGTCTGCTGCCTGAGCTCCACCATCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS TCA 90 bp AACCATCCTCGATCGTCCCTTGTTGGCTTGAACACATTGGGAACCTaGAGCTTTGGCGACGGGACGCCAATCAGAAAGTCAAGGACCACC +
Preference number: 5 (lower is better)
Translates to: NHPRSSLVGLNTLGT*SFGDGTPIRKSRTT
Trigger: GGTGGTCCTTGACTTTCTGATTGGCGTCCCGTCGCCAAAGCTTCAGGTTCCCAATGTGTTCAAGCCAACAAGGGACGATCGAGGATGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGGTCATCGCGTTCCTTaGCTTTATATGCCACATCAT +
Preference number: 5 (lower is better)
Translates to: PRTGPDSARLLPGETRHFGHRVP*LYMPHH
Trigger: ATGATGTGGCATATAAAGCAAAGGAACGCGATGACC...AAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCAGAGACTTCGGCAGCCAGGATGTaGTGGTCCTTCCAATACTGT +
Preference number: 5 (lower is better)
Translates to: PRTSPRHLMVQIFHSAETSAARM*WSFQYC
Trigger: ACAGTATTGGAAGGACCACAACATCCTGGCTGCCGA...AGTCTCTGCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp GACACTGCACCTACTACACAGGATACAAGGAGAACCCCTGCCTCCCCACTAAGGACAGTCCACCAGGGATaGGGGCCAATGGGATTAATA +
Preference number: 5 (lower is better)
Translates to: DTAPTTQDTRRTPASPLRTVHQG*GPMGLI
Trigger: TATTAATCCCATTGGCCCCAATCCCTGGTGGACTGT...CCTTAGTGGGGAGGCAGGGGTTCTCCTTGTATCCTGTGTAGTAGGTGCAGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CAA 90 bp CCAAGAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTCAGCCTTTCTTGAGCTaGTGTTCCTTCCTGTTAATG +
Preference number: 5 (lower is better)
Translates to: PRTGPDSARLLPGETRHFQPFLS*CSFLLM
Trigger: CATTAACAGGAAGGAACACAAGCTCAAGAAAGGCTG...AAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 90 bp GCTGTGCTCACAGTTCACACCATTCTTCACTTCAAGGTTTGTAGCTaGCTGAGGAGACACCGTTTGCCCATCTCTGTCCATGGAGTGCGG +
Preference number: 5 (lower is better)
Translates to: AVLTVHTILHFKVCS*LRRHRLPISVHGVR
Trigger: CCGCACTCCATGGACAGAGATGGGCAAACGGTGTCTCCTCAGTCAGCTACAAACCTTGAAGTGAAGAATGGTGTGAACTGTGAGCACAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 90 bp CCTTCTTCTTCGCATCGTCCAGCTTCTTCTTTTTGCTCTCAGGCATaGGGTCGTCCAGCCAGCTTAGCTCACGCTTGGAGAAGCAGAGAT +
Preference number: 5 (lower is better)
Translates to: PSSSHRPASSFCSQA*GRPASLAHAWRSRD
Trigger: ATCTCTGCTTCTCCAAGCGTGAGCTAAGCTGGCTGGACGACCTCATGCCTGAGAGCAAAAAGAAGAAGCTGGACGATGCGAAGAAGAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 90 bp GCTCAGGTGGTCCAGCTGGCTGTGCATGTGGATGGGGTAGGTCTCTaGCAGGTGGATCAGCTTTTCTATGGCTTCATAGATGAAGATGAT +
Preference number: 5 (lower is better)
Translates to: AQVVQLAVHVDGVGL*QVDQLFYGFIDEDD
Trigger: ATCATCTTCATCTATGAAGCCATAGAAAAGCTGATCCACCTGGCAGAGACCTACCCCATCCACATGCACAGCCAGCTGGACCACCTGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 90 bp CTGACTGTCAGGTTTGCCCAGTTCACTTCGGCAGCCAGGATGTTGTaGTCCTTCCAATACTGTAAGGTGTGGTTGTTTGGATTCTCCGGG +
Preference number: 5 (lower is better)
Translates to: LTVRFAQFTSAARML*SFQYCKVWLFGFSG
Trigger: CCCGGAGAATCCAAACAACCACACCTTACAGTATTGGAAGGACCACAACATCCTGGCTGCCGAAGTGAACTGGGCAAACCTGACAGTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp GAACGGGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTATGGGAAGGGACATTCTaGGGTGGCTCAATTCTAATA +
Preference number: 5 (lower is better)
Translates to: ERGQTQLGFFPERLAILLWEGTF*GGSILI
Trigger: TATTAGAATTGAGCCACCCAAGAATGTCCCTTCCCA...TAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCCCGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCAGAGACTACAGTCCACCAGGGATaGGGGCCAATGGGATTAATA +
Preference number: 5 (lower is better)
Translates to: PRTSPRHLMVQIFHSAETTVHQG*GPMGLI
Trigger: TATTAATCCCATTGGCCCCAATCCCTGGTGGACTGT...AGTCTCTGCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGCAGCTTAGCTCACGCTaGGAGAAGCAGAGATCCATG +
Preference number: 5 (lower is better)
Translates to: LGFFPERLAILLKPRTSPQLSSR*EKQRSM
Trigger: CATGGATCTCTGCTTCTCCAAGCGTGAGCTAAGCTG...CGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp GTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCCTGAAGCTGCTGCTCTaGCCAGGACTACTTAGCAGC +
Preference number: 5 (lower is better)
Translates to: VKTQNFSEAPHGPNLPLSLKLLL*PGLLSS
Trigger: GCTGCTAAGTAGTCCTGGCAAGAGCAGCAGCTTCAG...GCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 90 bp TGCTCACAGTTCACACCATTCTTCACTTCAAGGTTTGTAGCTGACTaGGGAGACACCGTTTGCCCATCTCTGTCCATGGAGTGCGGGTCA +
Preference number: 5 (lower is better)
Translates to: CSQFTPFFTSRFVAD*GDTVCPSLSMECGS
Trigger: TGACCCGCACTCCATGGACAGAGATGGGCAAACGGTGTCTCCTCAGTCAGCTACAAACCTTGAAGTGAAGAATGGTGTGAACTGTGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp GACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTCTCCTCTATGCTACTaGCACGCATGTCCAGAAGCA +
Preference number: 5 (lower is better)
Translates to: DSARLLPGETRHFVKTQNSPLCY*HACPEA
Trigger: TGCTTCTGGACATGCGTGCAAGTAGCATAGAGGAGA...GTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp GGGATGCTTCTTGCTACTGCTGTGCCTTCTCATGTTTGTCACTGCTATATCCCTACGATGGGGATGAGGTaGTTCCTCCTCCTCTCGTTC +
Preference number: 5 (lower is better)
Translates to: GMLLATAVPSHVCHCYIPTMGMR*FLLLSF
Trigger: GAACGAGAGGAGGAGGAACAACCTCATCCCCATCGT...AGGGATATAGCAGTGACAAACATGAGAAGGCACAGCAGTAGCAAGAAGCATCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CAA 90 bp CAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTTCGGCAGCCAGGATGTaGTGGTCCTTCCAATACTGT +
Preference number: 5 (lower is better)
Translates to: QLGFFPERLAILLKPRTSSAARM*WSFQYC
Trigger: ACAGTATTGGAAGGACCACAACATCCTGGCTGCCGA...AGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp GGGCCAGACTCAGCTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGCCTTTCTTGAGCTaGTGTTCCTTCCTGTTAATG +
Preference number: 5 (lower is better)
Translates to: GPDSARLLPGETRHFVKTQPFLS*CSFLLM
Trigger: CATTAACAGGAAGGAACACAAGCTCAAGAAAGGCTG...GGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAGCTGAGTCTGGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGCATTCGGATTCCAGCTaGAGGCTGTTCACATGGGTA +
Preference number: 5 (lower is better)
Translates to: LGFFPERLAILLKPRTSPHSDSS*RLFTWV
Trigger: TACCCATGTGAACAGCCTCAAGCTGGAATCCGAATG...CGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp TTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACAGTCTGGCTGGTGTTTaGCAGGCATCCCGAAAAGCT +
Preference number: 5 (lower is better)
Translates to: FFPERLAILLKPRTSPRHSLAGV*QASRKA
Trigger: AGCTTTTCGGGATGCCTGCAAAACACCAGCCAGACT...GTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp ACCCAGTGCGTTAACTGGGAGAAAGACAGTACTTTGCAGCAGAAGAGTGAATCAAGGCCAGCACCATCATaGGGAAAACAATGGCGGCCG +
Preference number: 5 (lower is better)
Translates to: TQCVNWEKDSTLQQKSESRPAPS*GKQWRP
Trigger: CGGCCGCCATTGTTTTCCCAATGATGGTGCTGGCCT...TGATTCACTCTTCTGCTGCAAAGTACTGTCTTTCTCCCAGTTAACGCACTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CAA 90 bp CTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTTCCAGCTTCTTCTTTTaGCTCTCAGGCATGAGGTCG +
Preference number: 5 (lower is better)
Translates to: LPGETRHFVKTQNFSEAPSSFFF*LSGMRS
Trigger: CGACCTCATGCCTGAGAGCAAAAAGAAGAAGCTGGA...AGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CTCGGCTTCTTCCCGGAGAGACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGTCCAGCTTCTTCTTTTaGCTCTCAGGCATGAGGTCG +
Preference number: 5 (lower is better)
Translates to: LGFFPERLAILLKPRTSPSSFFF*LSGMRS
Trigger: CGACCTCATGCCTGAGAGCAAAAAGAAGAAGCTGGA...CGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGTCTCTCCGGGAAGAAGCCGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp GAATTTTGGTTTCTTTCACAAAAGGAGAGGTTGCACACTCAGGCTGGTGCCTCGCTGAAGCTGCTGCTCTaGCCAGGACTACTTAGCAGC +
Preference number: 5 (lower is better)
Translates to: EFWFLSQKERLHTQAGASLKLLL*PGLLSS
Trigger: GCTGCTAAGTAGTCCTGGCAAGAGCAGCAGCTTCAG...CGAGGCACCAGCCTGAGTGTGCAACCTCTCCTTTTGTGAAAGAAACCAAAATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CAA 90 bp TTTCTTCGTGTGGCTTTTACACCTGAGCCAGAACTTGTCAACCAAAAGAAACCCAGAAGCACAGAGCCGTaGATGAGGCAGCTCCTCAGC +
Preference number: 5 (lower is better)
Translates to: FLRVAFTPEPELVNQKKPRSTEP*MRQLLS
Trigger: GCTGAGGAGCTGCCTCATCAACGGCTCTGTGCTTCT...GGGTTTCTTTTGGTTGACAAGTTCTGGCTCAGGTGTAAAAGCCACACGAAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CAA 90 bp CCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTCAGCAGAGACTTGGGAAGGGACATTCTaGGGTGGCTCAATTCTAATA +
Preference number: 5 (lower is better)
Translates to: PRTSPRHLMVQIFHSAETWEGTF*GGSILI
Trigger: TATTAGAATTGAGCCACCCAAGAATGTCCCTTCCCA...AGTCTCTGCTGAGTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp ACTCGCCATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATAGTCTGGCTGGTGTTTaGCAGGCATCCCGAAAAGCT +
Preference number: 5 (lower is better)
Translates to: TRHFVKTQNFSEAPHGPNSLAGV*QASRKA
Trigger: AGCTTTTCGGGATGCCTGCAAAACACCAGCCAGACT...ATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAATGGCGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp TTTCTTCGTGTGGCTTTTACACCTGAGCCAGAACTTGTCAACCAAAAGAAACCCCAGCTTAGCTCACGCTaGGAGAAGCAGAGATCCATG +
Preference number: 5 (lower is better)
Translates to: FLRVAFTPEPELVNQKKPQLSSR*EKQRSM
Trigger: CATGGATCTCTGCTTCTCCAAGCGTGAGCTAAGCTG...GGGTTTCTTTTGGTTGACAAGTTCTGGCTCAGGTGTAAAAGCCACACGAAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS-3UTR CAA 90 bp ATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACTACTGTAAGGTGTGGTaGTTTGGATTCTCCGGGAGC +
Preference number: 5 (lower is better)
Translates to: ILLKPRTSPRHLMVQIFHYCKVW*FGFSGS
Trigger: GCTCCCGGAGAATCCAAACAACCACACCTTACAGTA...GTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp ATTTTGTTAAAACCCAGAACTTCTCCGAGGCACCTCATGGTCCAAATCTTCCACCATTCGGATTCCAGCTaGAGGCTGTTCACATGGGTA +
Preference number: 5 (lower is better)
Translates to: ILLKPRTSPRHLMVQIFHHSDSS*RLFTWV
Trigger: TACCCATGTGAACAGCCTCAAGCTGGAATCCGAATG...GTGGAAGATTTGGACCATGAGGTGCCTCGGAGAAGTTCTGGGTTTTAACAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS-3UTR CAA 90 bp CATGAGAAGGAAGGTCATGAACGAAGAGCAGGGGACTTCACTGTGTATGTAAGAGGTCATCGCGTTCCTTaGCTTTATATGCCACATCAT +
Preference number: 5 (lower is better)
Translates to: HEKEGHERRAGDFTVYVRGHRVP*LYMPHH
Trigger: ATGATGTGGCATATAAAGCAAAGGAACGCGATGACC...TCTTACATACACAGTGAAGTCCCCTGCTCTTCGTTCATGACCTTCCTTCTCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023776.13
CDS TCA 90 bp ATTTATGCTGAGAGCCTTCCAGACCGTGGTTTTAGGCATTTCATCTaGTATATTAATCTCAGAAGGGTCACATCTGAAGCTGCTGCTCTT +
Preference number: 5 (lower is better)
Translates to: IYAESLPDRGFRHFI*YINLRRVTSEAAAL
Trigger: AAGAGCAGCAGCTTCAGATGTGACCCTTCTGAGATTAATATATCAGATGAAATGCCTAAAACCACGGTCTGGAAGGCTCTCAGCATAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 72 bp TTGCCCCGCCCTCCTCGTCTCCGGTGCTTCTGGCCATaGGTGCGGTGGTGCCGATGGCTCTGCCTCCCCAGC +
Preference number: 6 (lower is better)
Translates to: LPRPPRLRCFWP*VRWCRWLCLPS
Trigger: GCTGGGGAGGCAGAGCCATCGGCACCACCGCACTCATGGCCAGAAGCACCGGAGACGAGGAGGGCGGGGCAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 72 bp GCAGCACAGCCGGGGAGAGCCTCACGAAGGCCACGATaGGCCGGTCCAGCGTATCCACCTCTCCCACCAGGA +
Preference number: 6 (lower is better)
Translates to: AAQPGRASRRPR*AGPAYPPLPPG
Trigger: TCCTGGTGGGAGAGGTGGATACGCTGGACCGGCCCATCGTGGCCTTCGTGAGGCTCTCCCCGGCTGTGCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 72 bp CCCGGTAGTCACTCCAGTACCAGGGAGCCTTCCGCTTaGCATCCAGCACCAAGCCCCCAAACAGCCGCCCAG +
Preference number: 6 (lower is better)
Translates to: PGSHSSTREPSA*HPAPSPQTAAQ
Trigger: CTGGGCGGCTGTTTGGGGGCTTGGTGCTGGATGTCAAGCGGAAGGCTCCCTGGTACTGGAGTGACTACCGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 72 bp GATGGGTCCCACTCCCCTGGCGGAAGCACCGTCACCTaGTCCAGGAACTCGTCAATCCCTGCCAGGAGGTCA +
Preference number: 6 (lower is better)
Translates to: DGSHSPGGSTVT*SRNSSIPARRS
Trigger: TGACCTCCTGGCAGGGATTGACGAGTTCCTGGACCAGGTGACGGTGCTTCCGCCAGGGGAGTGGGACCCATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 72 bp AACAGCCGCCCAGTCCGCTCCAGTTCTGGCCCACTGTaGCCCCCATGTGGCTCTGGTTCTATGTGGCAAACG +
Preference number: 6 (lower is better)
Translates to: NSRPVRSSSGPL*PPCGSGSMWQT
Trigger: CGTTTGCCACATAGAACCAGAGCCACATGGGGGGCACAGTGGGCCAGAACTGGAGCGGACTGGGCGGCTGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 72 bp GTGACTCTCTGTTCCCGGATGCCCAAGAACTTGGGCTaGTCCCCGGGGGCAGAGCATTCGGATTCCAGCTTG +
Preference number: 6 (lower is better)
Translates to: VTLCSRMPKNLG*SPGAEHSDSSL
Trigger: CAAGCTGGAATCCGAATGCTCTGCCCCCGGGGAGCAGCCCAAGTTCTTGGGCATCCGGGAACAGAGAGTCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 72 bp ACCCTCACGCTGTCGCTCAGGTCTCGGAGCAGCTCCTaGTGGTCCAGGATCAGGTCTGAGATCTCCTCTATG +
Preference number: 6 (lower is better)
Translates to: TLTLSLRSRSSS*WSRIRSEISSM
Trigger: CATAGAGGAGATCTCAGACCTGATCCTGGACCAGCAGGAGCTGCTCCGAGACCTGAGCGACAGCGTGAGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 72 bp CAGCACCATCATTGGGAAAACAATGGCGGCCGGCGATaGCTTGATGACCCAGAGCAGGACGAGGCAGGTGAG +
Preference number: 6 (lower is better)
Translates to: QHHHWENNGGRR*LDDPEQDEAGE
Trigger: CTCACCTGCCTCGTCCTGCTCTGGGTCATCAAGGCATCGCCGGCCGCCATTGTTTTCCCAATGATGGTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 72 bp GGGTGGCTCAATTCTAATAGATGGGTCCCACTCCCCTaGCGGAAGCACCGTCACCTGGTCCAGGAACTCGTC +
Preference number: 6 (lower is better)
Translates to: GWLNSNRWVPLP*RKHRHLVQELV
Trigger: GACGAGTTCCTGGACCAGGTGACGGTGCTTCCGCCAGGGGAGTGGGACCCATCTATTAGAATTGAGCCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 72 bp CCAACCTCAGCGAAGGAGCGGACGATGGGGATGAGGTaGTTCCTCCTCCTCTCGTTCTGGTGGTGGTGCTTC +
Preference number: 6 (lower is better)
Translates to: PTSAKERTMGMR*FLLLSFWWWCF
Trigger: GAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCATCGTCCGCTCCTTCGCTGAGGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 72 bp CCATCTCTGTCCATGGAGTGCGGGTCAGACTGCTTCTaGCCAACCTCAGCGAAGGAGCGGACGATGGGGATG +
Preference number: 6 (lower is better)
Translates to: PSLSMECGSDCF*PTSAKERTMGM
Trigger: CATCCCCATCGTCCGCTCCTTCGCTGAGGTTGGCAAGAAGCAGTCTGACCCGCACTCCATGGACAGAGATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 90 bp TGCTTCTTGCCAACCTCAGCGAAGGAGCGGACGATGGGGATGAGGTaGTTCCTCCTCCTCTCGTTCTGGTGGTGGTGCTTCTTCAGCAGG +
Preference number: 6 (lower is better)
Translates to: CFLPTSAKERTMGMR*FLLLSFWWWCFFSR
Trigger: CCTGCTGAAGAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCATCGTCCGCTCCTTCGCTGAGGTTGGCAAGAAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 90 bp ACCGTTTGCCCATCTCTGTCCATGGAGTGCGGGTCAGACTGCTTCTaGCCAACCTCAGCGAAGGAGCGGACGATGGGGATGAGGTTGTTC +
Preference number: 6 (lower is better)
Translates to: TVCPSLSMECGSDCF*PTSAKERTMGMRLF
Trigger: GAACAACCTCATCCCCATCGTCCGCTCCTTCGCTGAGGTTGGCAAGAAGCAGTCTGACCCGCACTCCATGGACAGAGATGGGCAAACGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 72 bp TCTTGCCAACCTCAGCGAAGGAGCGGACGATGGGGATaGGGTTGTTCCTCCTCCTCTCGTTCTGGTGGTGGT +
Preference number: 6 (lower is better)
Translates to: SCQPQRRSGRWG*GCSSSSRSGGG
Trigger: ACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCATCGTCCGCTCCTTCGCTGAGGTTGGCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 72 bp GTTTGCCCATCTCTGTCCATGGAGTGCGGGTCAGACTaGTTCTTGCCAACCTCAGCGAAGGAGCGGACGATG +
Preference number: 6 (lower is better)
Translates to: VCPSLSMECGSD*FLPTSAKERTM
Trigger: CATCGTCCGCTCCTTCGCTGAGGTTGGCAAGAAGCAGTCTGACCCGCACTCCATGGACAGAGATGGGCAAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 72 bp CCCGTGCATCTCCTGGCATTCGCTGACTGTCAGGTTTaGCCAGTTCACTTCGGCAGCCAGGATGTTGTGGTC +
Preference number: 6 (lower is better)
Translates to: PVHLLAFADCQV*PVHFGSQDVVV
Trigger: GACCACAACATCCTGGCTGCCGAAGTGAACTGGGCAAACCTGACAGTCAGCGAATGCCAGGAGATGCACGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 72 bp CTCACGCTGTCGCTCAGGTCTCGGAGCAGCTCCTGCTaGTCCAGGATCAGGTCTGAGATCTCCTCTATGCTA +
Preference number: 6 (lower is better)
Translates to: LTLSLRSRSSSC*SRIRSEISSML
Trigger: TAGCATAGAGGAGATCTCAGACCTGATCCTGGACCAGCAGGAGCTGCTCCGAGACCTGAGCGACAGCGTGAG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 72 bp ACGATGGGGATGAGGTTGTTCCTCCTCCTCTCGTTCTaGTGGTGGTGCTTCTTCAGCAGGGCTTCCCGCACT +
Preference number: 6 (lower is better)
Translates to: TMGMRLFLLLSF*WWCFFSRASRT
Trigger: AGTGCGGGAAGCCCTGCTGAAGAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCATCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 72 bp ATGAGGTTGTTCCTCCTCCTCTCGTTCTGGTGGTGGTaGTTCTTCAGCAGGGCTTCCCGCACTTTAACCCTC +
Preference number: 6 (lower is better)
Translates to: MRLFLLLSFWWW*FFSRASRTLTL
Trigger: GAGGGTTAAAGTGCGGGAAGCCCTGCTGAAGAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 72 bp ATGGGGATGAGGTTGTTCCTCCTCCTCTCGTTCTGGTaGTGGTGCTTCTTCAGCAGGGCTTCCCGCACTTTA +
Preference number: 6 (lower is better)
Translates to: MGMRLFLLLSFW*WCFFSRASRTL
Trigger: TAAAGTGCGGGAAGCCCTGCTGAAGAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 72 bp GAGGCACATGTTCTTCATCTTCCTCAGTGCCAAGAATaGACTGAACACGCTGAGACGGGGTGTCGTGGGCCA +
Preference number: 6 (lower is better)
Translates to: EAHVLHLPQCQE*TEHAETGCRGP
Trigger: TGGCCCACGACACCCCGTCTCAGCGTGTTCAGTTCATTCTTGGCACTGAGGAAGATGAAGAACATGTGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 72 bp TCGCATCGTCCAGCTTCTTCTTTTTGCTCTCAGGCATaGGGTCGTCCAGCCAGCTTAGCTCACGCTTGGAGA +
Preference number: 6 (lower is better)
Translates to: SHRPASSFCSQA*GRPASLAHAWR
Trigger: TCTCCAAGCGTGAGCTAAGCTGGCTGGACGACCTCATGCCTGAGAGCAAAAAGAAGAAGCTGGACGATGCGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS GCA 72 bp AAGCACCGTCACCTGGTCCAGGAACTCGTCAATCCCTaGCAGGAGGTCATCGCGTTCCTTTGCTTTATATGC +
Preference number: 6 (lower is better)
Translates to: KHRHLVQELVNP*QEVIAFLCFIC
Trigger: GCATATAAAGCAAAGGAACGCGATGACCTCCTGGCAGGGATTGACGAGTTCCTGGACCAGGTGACGGTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 72 bp TCAGGCATGAGGTCGTCCAGCCAGCTTAGCTCACGCTaGGAGAAGCAGAGATCCATGACTTTCCTGACGAAG +
Preference number: 6 (lower is better)
Translates to: SGMRSSSQLSSR*EKQRSMTFLTK
Trigger: CTTCGTCAGGAAAGTCATGGATCTCTGCTTCTCCAAGCGTGAGCTAAGCTGGCTGGACGACCTCATGCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 90 bp TTTTTGCTCTCAGGCATGAGGTCGTCCAGCCAGCTTAGCTCACGCTaGGAGAAGCAGAGATCCATGACTTTCCTGACGAAGACCAAGGCC +
Preference number: 6 (lower is better)
Translates to: FLLSGMRSSSQLSSR*EKQRSMTFLTKTKA
Trigger: GGCCTTGGTCTTCGTCAGGAAAGTCATGGATCTCTGCTTCTCCAAGCGTGAGCTAAGCTGGCTGGACGACCTCATGCCTGAGAGCAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 72 bp CGATCGTCCCTTGTTGGCTTGAACACATTGGGAACCTaGAGCTTTGGCGACGGGACGCCAATCAGAAAGTCA +
Preference number: 6 (lower is better)
Translates to: RSSLVGLNTLGT*SFGDGTPIRKS
Trigger: TGACTTTCTGATTGGCGTCCCGTCGCCAAAGCTTCAGGTTCCCAATGTGTTCAAGCCAACAAGGGACGATCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 72 bp GCCAGGATGTTGTGGTCCTTCCAATACTGTAAGGTGTaGTTGTTTGGATTCTCCGGGAGCACACACCTGCAG +
Preference number: 6 (lower is better)
Translates to: ARMLWSFQYCKV*LFGFSGSTHLQ
Trigger: CTGCAGGTGTGTGCTCCCGGAGAATCCAAACAACCACACCTTACAGTATTGGAAGGACCACAACATCCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CCA 72 bp CCTTGTTGGCTTGAACACATTGGGAACCTGAAGCTTTaGCGACGGGACGCCAATCAGAAAGTCAAGGACCAC +
Preference number: 6 (lower is better)
Translates to: PCWLEHIGNLKL*RRDANQKVKDH
Trigger: GTGGTCCTTGACTTTCTGATTGGCGTCCCGTCGCCAAAGCTTCAGGTTCCCAATGTGTTCAAGCCAACAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 72 bp TCCTCCTTCTTCTTCGCATCGTCCAGCTTCTTCTTTTaGCTCTCAGGCATGAGGTCGTCCAGCCAGCTTAGC +
Preference number: 6 (lower is better)
Translates to: SSFFFASSSFFF*LSGMRSSSQLS
Trigger: GCTAAGCTGGCTGGACGACCTCATGCCTGAGAGCAAAAAGAAGAAGCTGGACGATGCGAAGAAGAAGGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 90 bp CAGCCAGGATGTTGTGGTCCTTCCAATACTGTAAGGTGTGGTTGTTaGGATTCTCCGGGAGCACACACCTGCAGTAATAGAGGCTCAGGT +
Preference number: 6 (lower is better)
Translates to: QPGCCGPSNTVRCGC*DSPGAHTCSNRGSG
Trigger: ACCTGAGCCTCTATTACTGCAGGTGTGTGCTCCCGGAGAATCCAAACAACCACACCTTACAGTATTGGAAGGACCACAACATCCTGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 90 bp CACAGGAGAGCTGGGATAATTGCGGCTATCACAGTCCACCAGGGATaGGGGCCAATGGGATTAATAAACCATCCTCGATCGTCCCTTGTT +
Preference number: 6 (lower is better)
Translates to: HRRAGIIAAITVHQG*GPMGLINHPRSSLV
Trigger: AACAAGGGACGATCGAGGATGGTTTATTAATCCCATTGGCCCCAATCCCTGGTGGACTGTGATAGCCGCAATTATCCCAGCTCTCCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 72 bp GCTGGGATAATTGCGGCTATCACAGTCCACCAGGGATaGGGGCCAATGGGATTAATAAACCATCCTCGATCG +
Preference number: 6 (lower is better)
Translates to: AGIIAAITVHQG*GPMGLINHPRS
Trigger: CGATCGAGGATGGTTTATTAATCCCATTGGCCCCAATCCCTGGTGGACTGTGATAGCCGCAATTATCCCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 72 bp GTCAGGTTTGCCCAGTTCACTTCGGCAGCCAGGATGTaGTGGTCCTTCCAATACTGTAAGGTGTGGTTGTTT +
Preference number: 6 (lower is better)
Translates to: VRFAQFTSAARM*WSFQYCKVWLF
Trigger: AAACAACCACACCTTACAGTATTGGAAGGACCACAACATCCTGGCTGCCGAAGTGAACTGGGCAAACCTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 72 bp TTCACACCATTCTTCACTTCAAGGTTTGTAGCTGACTaGGGAGACACCGTTTGCCCATCTCTGTCCATGGAG +
Preference number: 6 (lower is better)
Translates to: FTPFFTSRFVAD*GDTVCPSLSME
Trigger: CTCCATGGACAGAGATGGGCAAACGGTGTCTCCTCAGTCAGCTACAAACCTTGAAGTGAAGAATGGTGTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS CAA 72 bp TGTTGTGGTCCTTCCAATACTGTAAGGTGTGGTTGTTaGGATTCTCCGGGAGCACACACCTGCAGTAATAGA +
Preference number: 6 (lower is better)
Translates to: CCGPSNTVRCGC*DSPGAHTCSNR
Trigger: TCTATTACTGCAGGTGTGTGCTCCCGGAGAATCCAAACAACCACACCTTACAGTATTGGAAGGACCACAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2
CDS TCA 72 bp GAGAGCCTTCCAGACCGTGGTTTTAGGCATTTCATCTaGTATATTAATCTCAGAAGGGTCACATCTGAAGCT +
Preference number: 6 (lower is better)
Translates to: ESLPDRGFRHFI*YINLRRVTSEA
Trigger: AGCTTCAGATGTGACCCTTCTGAGATTAATATATCAGATGAAATGCCTAAAACCACGGTCTGGAAGGCTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023776.13
ENSMUST00000162049.2