RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC4A5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068323

Ensembl transcript IDs: ENSMUST00000039212.8, ENSMUST00000113899.8, ENSMUST00000113900.8

Found 364 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTCAGTGTGTGGAAGGCCCAGCCACACTTAAAAAGCCAAGCCCACTaGACAGAGGACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTAC +
Preference number: 1 (lower is better)
Translates to: FSVWKAQPHLKSQAH*TEDFKEKEVKAMSY
Trigger: GTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTCCTCTGTTCAGTGGGCTTGGCTTTTTAAGTGTGGCTGGGCCTTCCACACACTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR GCA 90 bp AACAGAGGACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTaGAAACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCA +
Preference number: 1 (lower is better)
Translates to: NRGLQGEGGESHVLP*KPAGLIQTFNTIKS
Trigger: TGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTCCTCTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR CAA 90 bp GGGGGAGCGCTGTGTCTATGTCGGAGGTCCCTGAAAGGCCTCCAGTaGTCTCTCTGGTCGGTGGGTAAGGAAGCAGGTGTAAGGCTTGAC +
Preference number: 2 (lower is better)
Translates to: GGALCLCRRSLKGLQ*SLWSVGKEAGVRLD
Trigger: GTCAAGCCTTACACCTGCTTCCTTACCCACCGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACATAGACACAGCGCTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR GCA 90 bp GACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTGCAAACCTGCAGGACAGCCAGGCTTTCCCCTaGCCCCAGTCTGGAAGAGCA +
Preference number: 2 (lower is better)
Translates to: DFKEKEVKAMSYRANLQDSQAFP*PQSGRA
Trigger: TGCTCTTCCAGACTGGGGGCAGGGGAAAGCCTGGCT...GTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR TCA 90 bp GACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTGCAAACCTGCAGGACTTGACACCCTCTAGATaGAGCCAGCCAGGCTTTCCC +
Preference number: 2 (lower is better)
Translates to: DFKEKEVKAMSYRANLQDLTPSR*SQPGFP
Trigger: GGGAAAGCCTGGCTGGCTTCATCTAGAGGGTGTCAA...GTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR TCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTGTAGCTGAAAGCAGGTaGAGCCGGGCAAGAGATTTT +
Preference number: 2 (lower is better)
Translates to: SSDSISILTCGTMKTGLRVAESR*SRARDF
Trigger: AAAATCTCTTGCCCGGCTTCACCTGCTTTCAGCTAC...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
3UTR-3UTR TCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCGTAGCTGAAAGCAGGTaGAGCCGGGCAAGAGATTTT +
Preference number: 2 (lower is better)
Translates to: SSSVRLSSDSISILTCGTVAESR*SRARDF
Trigger: AAAATCTCTTGCCCGGCTTCACCTGCTTTCAGCTAC...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
3UTR-3UTR TCA 90 bp GACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTGCAAACCTGCAGGACAGCAGGTGTAAGGCTTaGCACCCTCTAGATGAAGCC +
Preference number: 2 (lower is better)
Translates to: DFKEKEVKAMSYRANLQDSRCKA*HPLDEA
Trigger: GGCTTCATCTAGAGGGTGTCAAGCCTTACACCTGCT...GTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR TCA 90 bp TGGCGGCACATGCCTTTAATCTCAGAGACAGGTGGGTCTCTGAATTCTGAGGCTTATGTCGGAGGTCCCTaGAAGGCCTCCAGTTGTCTC +
Preference number: 2 (lower is better)
Translates to: WRHMPLISETGGSLNSEAYVGGP*KASSCL
Trigger: GAGACAACTGGAGGCCTTTCAGGGACCTCCGACATA...AGCCTCAGAATTCAGAGACCCACCTGTCTCTGAGATTAAAGGCATGTGCCGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR CCA 90 bp CCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCCCCCTGCCCCCAGTCTaGAAGAGCAGCGCTGGACTA +
Preference number: 2 (lower is better)
Translates to: PGLVQRKMNSFVLERVWIPLPPV*KSSAGL
Trigger: TAGTCCAGCGCTGCTCTTCCAGACTGGGGGCAGGGG...GATCCAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
3UTR-3UTR GCA 90 bp CTGAGGCTAGCTGGCTTTCCAGGAAAGCTGAGGGTACACAGTGAGAACCCATCTCCACCACTGGCCACTTaGCTTATTTGTAACTTTGGA +
Preference number: 2 (lower is better)
Translates to: LRLAGFPGKLRVHSENPSPPLAT*LICNFG
Trigger: TCCAAAGTTACAAATAAGGCAAGTGGCCAGTGGTGG...AGATGGGTTCTCACTGTGTACCCTCAGCTTTCCTGGAAAGCCAGCTAGCCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR GCA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGCCCAGCTGGGAATGGTaGCTCTTCCAACCACTGGTA +
Preference number: 2 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLPSWEW*LFQPLV
Trigger: TACCAGTGGTTGGAAGAGGCACCATTCCCAGCTGGG...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR TCA 90 bp GCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAAGAGCAGGTGTAAGGCTTaGCACCCTCTAGATGAAGCC +
Preference number: 2 (lower is better)
Translates to: AIAKLCREREDLLKYIIKSRCKA*HPLDEA
Trigger: GGCTTCATCTAGAGGGTGTCAAGCCTTACACCTGCT...CTTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR TCA 90 bp AAACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATATGTCGGAGGTCCCTaGAAGGCCTCCAGTTGTCTC +
Preference number: 2 (lower is better)
Translates to: KPAGLIQTFNTIKSLRHQYVGGP*KASSCL
Trigger: GAGACAACTGGAGGCCTTTCAGGGACCTCCGACATA...TTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR GCA 90 bp AGTACTCCTTTGATTACAAACATTAGCTGCCTAGCATGCAATGTTCTTGAGATTAGCCAGGCTTTCCCCTaGCCCCAGTCTGGAAGAGCA +
Preference number: 2 (lower is better)
Translates to: STPLITNISCLACNVLEISQAFP*PQSGRA
Trigger: TGCTCTTCCAGACTGGGGGCAGGGGAAAGCCTGGCT...AATCTCAAGAACATTGCATGCTAGGCAGCTAATGTTTGTAATCAAAGGAGTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR CCA 90 bp AAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCAGTGAAGAGCTGGCAGTCTGGCTATTCAGTGTGTaGAAGGCCCAGCCACACTTA +
Preference number: 2 (lower is better)
Translates to: KMNSFVLERVWISEELAVWLFSV*KAQPHL
Trigger: TAAGTGTGGCTGGGCCTTCCACACACTGAATAGCCA...GACTGCCAGCTCTTCACTGATCCAAACCCTTTCCAACACAAAACTGTTCATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR CCA 90 bp CTGAGGCTAGCTGGCTTTCCAGGAAAGCTGAGGGTACACAGTGAGAACCCATCTTATATCTATGGTGGGTaGCATTTTAAGCTGTATGTT +
Preference number: 2 (lower is better)
Translates to: LRLAGFPGKLRVHSENPSYIYGG*HFKLYV
Trigger: AACATACAGCTTAAAATGCCACCCACCATAGATATA...AGATGGGTTCTCACTGTGTACCCTCAGCTTTCCTGGAAAGCCAGCTAGCCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR GCA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCACCACCACTGGCCACTTaGCTTATTTGTAACTTTGGA +
Preference number: 2 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSPPLAT*LICNFG
Trigger: TCCAAAGTTACAAATAAGGCAAGTGGCCAGTGGTGG...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR CCA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGGTGTTGGAAAGGGTTTaGATCAGTGAAGAGCTGGCA +
Preference number: 2 (lower is better)
Translates to: RMISLLKANWFSSSFGYWVLERV*ISEELA
Trigger: TGCCAGCTCTTCACTGATCCAAACCCTTTCCAACAC...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR CCA 90 bp AGCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAATATATCTATGGTGGGTaGCATTTTAAGCTGTATGTT +
Preference number: 2 (lower is better)
Translates to: SYCKIVQGERGPTQIHHQYIYGG*HFKLYV
Trigger: AACATACAGCTTAAAATGCCACCCACCATAGATATA...TTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR CCA 72 bp GCCCCCAGTCTGGAAGAGCAGCGCTGGACTAGAGGGTaGTCTCCCCGCCCACCTCTCTCCCATAGTCCTCCT +
Preference number: 3 (lower is better)
Translates to: APSLEEQRWTRG*SPRPPLSHSPP
Trigger: AGGAGGACTATGGGAGAGAGGTGGGCGGGGAGACCACCCTCTAGTCCAGCGCTGCTCTTCCAGACTGGGGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
3UTR CCA 72 bp TGTCGGAGGTCCCTGAAAGGCCTCCAGTTGTCTCTCTaGTCGGTGGGTAAGGAAGCAGGTGTAAGGCTTGAC +
Preference number: 3 (lower is better)
Translates to: CRRSLKGLQLSL*SVGKEAGVRLD
Trigger: GTCAAGCCTTACACCTGCTTCCTTACCCACCGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR CAA 90 bp GCGCTGTGTCTATGTCGGAGGTCCCTGAAAGGCCTCCAGTTGTCTCTCTGGTCGGCCGGGCAAGAGATTTaGAAATGCAGGGTGATGCTT +
Preference number: 3 (lower is better)
Translates to: ALCLCRRSLKGLQLSLWSAGQEI*KCRVML
Trigger: AAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGC...CGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACATAGACACAGCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
3UTR-3UTR CAA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGGCCGGGCAAGAGATTTaGAAATGCAGGGTGATGCTT +
Preference number: 3 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRAGQEI*KCRVML
Trigger: AAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGC...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
3UTR TCA 72 bp TGGAAGGCCCAGCCACACTTAAAAAGCCAAGCCCACTaGACAGAGGACTTCAAGGAGAAGGAGGTGAAAGCC +
Preference number: 3 (lower is better)
Translates to: WKAQPHLKSQAH*TEDFKEKEVKA
Trigger: GGCTTTCACCTCCTTCTCCTTGAAGTCCTCTGTTCAGTGGGCTTGGCTTTTTAAGTGTGGCTGGGCCTTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR GCA 72 bp CTGAAAGCAGGTGAAGCCGGGCAAGAGATTTTGAAATaGAGGGTGATGCTTCGATCCAGTTCTGAGCCACTG +
Preference number: 3 (lower is better)
Translates to: LKAGEAGQEILK*RVMLRSSSEPL
Trigger: CAGTGGCTCAGAACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGCTTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
3UTR GCA 72 bp CTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTaGAAACCTGCAGGACTCATTCAGACCTTCAATACC +
Preference number: 3 (lower is better)
Translates to: LQGEGGESHVLP*KPAGLIQTFNT
Trigger: GGTATTGAAGGTCTGAATGAGTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR CCA 72 bp CAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTaGATCAGTGAAGAGCTGGCAGTCTTACCCCAGCTG +
Preference number: 3 (lower is better)
Translates to: QRKMNSFVLERV*ISEELAVLPQL
Trigger: CAGCTGGGGTAAGACTGCCAGCTCTTCACTGATCCAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR CCA 72 bp GAGAGAGTGCTACTACAGATCAGTGAGATTGAAATGTaGATGCCGTTAGTTCTCCCAGGATTGGTGCAGAGG +
Preference number: 3 (lower is better)
Translates to: ERVLLQISEIEM*MPLVLPGLVQR
Trigger: CCTCTGCACCAATCCTGGGAGAACTAACGGCATCCACATTTCAATCTCACTGATCTGTAGTAGCACTCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR-3UTR CAA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGCTGAAAGGCCTCCAGTaGTCTCTCTGGTCGGTGGGT +
Preference number: 3 (lower is better)
Translates to: RMISLLKANWFSSSFGYWLKGLQ*SLWSVG
Trigger: ACCCACCGACCAGAGAGACAACTGGAGGCCTTTCAG...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR TCA 72 bp GTGACAAACTTAAAGGGTCATTTGGTTGACCTAATGTaGCTTAAGAGTTCAGCTAATGGGCACTATTTTGCC +
Preference number: 3 (lower is better)
Translates to: VTNLKGHLVDLM*LKSSANGHYFA
Trigger: GGCAAAATAGTGCCCATTAGCTGAACTCTTAAGTCACATTAGGTCAACCAAATGACCCTTTAAGTTTGTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR GCA 72 bp AGATTGGAAATTTGGGCTTTAGCTATTGCAAAATTGTaGAGGGAGAGAGAGGACCTACTCAAATACATCATC +
Preference number: 3 (lower is better)
Translates to: RLEIWALAIAKL*REREDLLKYII
Trigger: GATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGCTAAAGCCCAAATTTCCAATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR CCA 72 bp AGAGAGAGGACCTACTCAAATACATCATCAAGTAGATaGACTCCAGGTTATGAAGCCAGTGACAAACTTAAA +
Preference number: 3 (lower is better)
Translates to: RERTYSNTSSSR*TPGYEASDKLK
Trigger: TTTAAGTTTGTCACTGGCTTCATAACCTGGAGTCCATCTACTTGATGATGTATTTGAGTAGGTCCTCTCTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp GCGCTGTGTCTATGTCGGAGGTCCCTGAAAGGCCTCCAGTTGTCTCTCTGGTCGCAGAGTTGGGCCTGCTaGGGAGCTCCGGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: ALCLCRRSLKGLQLSLWSQSWAC*GAPGRA
Trigger: AGCTCTGCCCGGAGCTCCTCAGCAGGCCCAACTCTG...CGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACATAGACACAGCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AAGAGCAGCGCTGGACTAGAGGGTGGTCTCCCCGCCCACCTCTCTCCCATAGTCAAAGCGTGGTCCGGCTaGTGCTTGGCTGGCATGAGG +
Preference number: 4 (lower is better)
Translates to: KSSAGLEGGLPAHLSPIVKAWSG*CLAGMR
Trigger: CCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTT...GACTATGGGAGAGAGGTGGGCGGGGAGACCACCCTCTAGTCCAGCGCTGCTCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
CDS-3UTR TCA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGCAGAGTTGGGCCTGCTaGGGAGCTCCGGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPQSWAC*GAPGRA
Trigger: AGCTCTGCCCGGAGCTCCTCAGCAGGCCCAACTCTG...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp CAGCGCTGGACTAGAGGGTGGTCTCCCCGCCCACCTCTCTCCCATAGTCCTCCTGTTCCCAGAACTGGATaGCATTCAGGGAGGCCACAC +
Preference number: 4 (lower is better)
Translates to: QRWTRGWSPRPPLSHSPPVPRTG*HSGRPH
Trigger: GTGTGGCCTCCCTGAATGGCATCCAGTTCTGGGAAC...AGGAGGACTATGGGAGAGAGGTGGGCGGGGAGACCACCCTCTAGTCCAGCGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
CDS-3UTR CCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTCGGCGAAGGGGCACGTaGCGCAGGAAAGCGTGGTCC +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRRRRGT*RRKAWS
Trigger: GGACCACGCTTTCCTGCGCCACGTGCCCCTTCGCCG...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTGCTGGCCCTGATCCCTaGGCCAGCCAGCTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRAGPDP*ASQLLL
Trigger: CAGCAGGAGCTGGCTGGCCCAGGGATCAGGGCCAGC...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGCAGAGTTGGGCCTGCTaGGGAGCTCCGGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRQSWAC*GAPGRA
Trigger: AGCTCTGCCCGGAGCTCCTCAGCAGGCCCAACTCTG...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp CAGCGCTGGACTAGAGGGTGGTCTCCCCGCCCACCTCTCTCCCATAGTCCTCCTAAGGCACTGGATGGCTaGGTGAAGACCAATCCAGAG +
Preference number: 4 (lower is better)
Translates to: QRWTRGWSPRPPLSHSPPKALDG*VKTNPE
Trigger: CTCTGGATTGGTCTTCACTCAGCCATCCAGTGCCTT...AGGAGGACTATGGGAGAGAGGTGGGCGGGGAGACCACCCTCTAGTCCAGCGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
CDS-3UTR GCA 90 bp GCGCTGTGTCTATGTCGGAGGTCCCTGAAAGGCCTCCAGTTGTCTCTCTGGTCGTCCTCAGTGGAGCGGTaGAGAGTTGGGCCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: ALCLCRRSLKGLQLSLWSSSVER*RVGPAE
Trigger: CTCAGCAGGCCCAACTCTGCACCGCTCCACTGAGGA...CGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACATAGACACAGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp CAGCGCTGGACTAGAGGGTGGTCTCCCCGCCCACCTCTCTCCCATAGTCCTCCTTGCCACCTCCTTCTCTaGCGTCTCATGGACCTCTTT +
Preference number: 4 (lower is better)
Translates to: QRWTRGWSPRPPLSHSPPCHLLL*RLMDLF
Trigger: AAAGAGGTCCATGAGACGGCAGAGAAGGAGGTGGCA...AGGAGGACTATGGGAGAGAGGTGGGCGGGGAGACCACCCTCTAGTCCAGCGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
CDS-3UTR CCA 90 bp GCGCTGTGTCTATGTCGGAGGTCCCTGAAAGGCCTCCAGTTGTCTCTCTGGTCGCATGAGCGCCAGGTCTaGGACGAACTGGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: ALCLCRRSLKGLQLSLWSHERQV*DELAGA
Trigger: AGCTCCTGCCAGTTCGTCCCAGACCTGGCGCTCATG...CGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACATAGACACAGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTTGTGGGCGATGGAGATaGCCGTGGCAGCCACGTACC +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRCGRWR*PWQPRT
Trigger: GGTACGTGGCTGCCACGGTCATCTCCATCGCCCACA...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCTGTGGGCGATGGAGATaGCCGTGGCAGCCACGTACC +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTCGRWR*PWQPRT
Trigger: GGTACGTGGCTGCCACGGTCATCTCCATCGCCCACA...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTGCAAACCTGCAGGACGGGCCGGCAGGATGCTaGCAGGGTACACCCACCAAG +
Preference number: 4 (lower is better)
Translates to: DFKEKEVKAMSYRANLQDGPAGC*QGTPTK
Trigger: CTTGGTGGGTGTACCCTGCCAGCATCCTGCCGGCCC...GTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGAAAGCGTGGTCCGGCTaGTGCTTGGCTGGCATGAGG +
Preference number: 4 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPKAWSG*CLAGMR
Trigger: CCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTT...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACTGGCGCAGGAAAGCGTaGTCCGGCTGGTGCTTGGCT +
Preference number: 4 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHWRRKA*SGWCLA
Trigger: AGCCAAGCACCAGCCGGACCACGCTTTCCTGCGCCA...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTCGGCGAAGGGGCACGTaGCGCAGGAAAGCGTGGTCC +
Preference number: 4 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSRRRGT*RRKAWS
Trigger: GGACCACGCTTTCCTGCGCCACGTGCCCCTTCGCCG...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATTCCACGGCACCTCCCTaGCTGCTGGCCCTGATCCCT +
Preference number: 4 (lower is better)
Translates to: VVCEVELRFHLYPHLRHHSTAPP*LLALIP
Trigger: AGGGATCAGGGCCAGCAGCCAGGGAGGTGCCGTGGA...ATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTGCAAACCTGCAGGACACCAGGGTGAACAGGTaGATGCGGCGAAGGGGCACG +
Preference number: 4 (lower is better)
Translates to: DFKEKEVKAMSYRANLQDTRVNR*MRRRGT
Trigger: CGTGCCCCTTCGCCGCATTCACCTGTTCACCCTGGT...GTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp GTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATCCAGCCAGCTCCTGCTaGGGCTTGCCTGGTTTCAGG +
Preference number: 4 (lower is better)
Translates to: VVCEVELRFHLYPHLRHHPASSC*GLPGFR
Trigger: CCTGAAACCAGGCAAGCCTCAGCAGGAGCTGGCTGG...ATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGTCCTCAGTGGAGCGGTaGAGAGTTGGGCCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRSSVER*RVGPAE
Trigger: CTCAGCAGGCCCAACTCTGCACCGCTCCACTGAGGA...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GCGCTGTGTCTATGTCGGAGGTCCCTGAAAGGCCTCCAGTTGTCTCTCTGGTCGATCCACCATGAGGGTTaGGATGGCTCGGCCAATCTC +
Preference number: 4 (lower is better)
Translates to: ALCLCRRSLKGLQLSLWSIHHEG*DGSANL
Trigger: GAGATTGGCCGAGCCATCGCAACCCTCATGGTGGAT...CGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACATAGACACAGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGGCTCCTGCTGAGGCTTaGCTGGTTTCAGGGACCACT +
Preference number: 4 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPAPAEA*LVSGTT
Trigger: AGTGGTCCCTGAAACCAGGCAAGCCTCAGCAGGAGC...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTGGGCCGGCAGGATGCTaGCAGGGTACACCCACCAAG +
Preference number: 4 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSGPAGC*QGTPTK
Trigger: CTTGGTGGGTGTACCCTGCCAGCATCCTGCCGGCCC...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTTCAGGAGCACGTAGCTaGCCCTCTCCCGGAGCTCAG +
Preference number: 4 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSSGARS*PSPGAQ
Trigger: CTGAGCTCCGGGAGAGGGTCAGCTACGTGCTCCTGA...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGAGGGCAGCTTCCTCTTaGCATCCAGACACAGTCCTC +
Preference number: 4 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPRAASS*HPDTVL
Trigger: GAGGACTGTGTCTGGATGTCAAGAGGAAGCTGCCCT...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCACTGGATGGCTGAGTaGAGACCAATCCAGAGGCGG +
Preference number: 4 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHHWMAE*RPIQRR
Trigger: CCGCCTCTGGATTGGTCTTCACTCAGCCATCCAGTG...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GCGCTGTGTCTATGTCGGAGGTCCCTGAAAGGCCTCCAGTTGTCTCTCTGGTCGGGTGCTTGGCTGGCATaGGGAAAAGCTTACAGCGTT +
Preference number: 4 (lower is better)
Translates to: ALCLCRRSLKGLQLSLWSGAWLA*GKAYSV
Trigger: AACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACC...CGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACATAGACACAGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp TCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCAGGGTGAACAGGTaGATGCGGCGAAGGGGCACG +
Preference number: 4 (lower is better)
Translates to: SVRLSSDSISILTCGTMKTRVNR*MRRRGT
Trigger: CGTGCCCCTTCGCCGCATTCACCTGTTCACCCTGGT...CTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GCGCTGTGTCTATGTCGGAGGTCCCTGAAAGGCCTCCAGTTGTCTCTCTGGTCGTGGACACATGGGGCTTaGTCCATCGTTCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: ALCLCRRSLKGLQLSLWSWTHGA*SIVLLL
Trigger: AAGGAGGAGAACGATGGAGCAAGCCCCATGTGTCCA...CGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACATAGACACAGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp GACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTGCAAACCTGCAGGACGCGTGGTCCGGCTGGTaGTTGGCTGGCATGAGGAAA +
Preference number: 4 (lower is better)
Translates to: DFKEKEVKAMSYRANLQDAWSGW*LAGMRK
Trigger: TTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGC...GTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTCGCCCACGAGCACGTTaGAAGCTTCTGAGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRRPRAR*KLLSPW
Trigger: CCAAGGACTCAGAAGCTTCCAACGTGCTCGTGGGCG...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCACAGAGCCATTCATCTaGCCCGGCTCTGCCAGAGAG +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTTEPFI*PGSARE
Trigger: CTCTCTGGCAGAGCCGGGCCAGATGAATGGCTCTGT...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp CTGAGGCTAGCTGGCTTTCCAGGAAAGCTGAGGGTACACAGTGAGAACCCATCTCATGAGCGCCAGGTCTaGGACGAACTGGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: LRLAGFPGKLRVHSENPSHERQV*DELAGA
Trigger: AGCTCCTGCCAGTTCGTCCCAGACCTGGCGCTCATG...AGATGGGTTCTCACTGTGTACCCTCAGCTTTCCTGGAAAGCCAGCTAGCCTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp TCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGCATGAGCGCCAGGTCTaGGACGAACTGGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: SSVRLSSDSISILTCGTMHERQV*DELAGA
Trigger: AGCTCCTGCCAGTTCGTCCCAGACCTGGCGCTCATG...CATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTTGGCGCAGGAAAGCGTaGTCCGGCTGGTGCTTGGCT +
Preference number: 4 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSWRRKA*SGWCLA
Trigger: AGCCAAGCACCAGCCGGACCACGCTTTCCTGCGCCA...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp AAGAGCAGCGCTGGACTAGAGGGTGGTCTCCCCGCCCACCTCTCTCCCATAGTCTTCTCTGCCGTCTCATaGACCTCTTTCCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: KSSAGLEGGLPAHLSPIVFSAVS*TSFLLF
Trigger: GAAGAGAAGGAAAGAGGTCCATGAGACGGCAGAGAA...GACTATGGGAGAGAGGTGGGCGGGGAGACCACCCTCTAGTCCAGCGCTGCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
CDS-3UTR TCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTGGCTTCTTGGTTTGGTaGCGATGCTTCCTCAGGAGC +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRGFLVW*RCFLRS
Trigger: GCTCCTGAGGAAGCATCGTCACCAAACCAAGAAGCC...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp CAGCGCTGGACTAGAGGGTGGTCTCCCCGCCCACCTCTCTCCCATAGTCCTCCTTCTGTGTTTGGGGTATaGGAGATGTCATTCATGCTT +
Preference number: 4 (lower is better)
Translates to: QRWTRGWSPRPPLSHSPPSVFGV*EMSFML
Trigger: AAGCATGAATGACATCTCTCATACCCCAAACACAGA...AGGAGGACTATGGGAGAGAGGTGGGCGGGGAGACCACCCTCTAGTCCAGCGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
CDS-3UTR TCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTGGGGATCTTTACAACTaGGGGAGGAAGGAACTGGGG +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRGDLYN*GRKELG
Trigger: CCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCC...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTGAGTGTCCATCTCTGTaGAGAGGGTGGGGTTGGGAG +
Preference number: 4 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTECPSL*RGWGWE
Trigger: CTCCCAACCCCACCCTCTTCACAGAGATGGACACTC...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGCTGTCTGCAGGCAGGTaGGGAGCTCAAAGAGACTGT +
Preference number: 4 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRLSAGR*GAQRDC
Trigger: ACAGTCTCTTTGAGCTCCGCACCTGCCTGCAGACAG...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACATCCACCATGAGGGTTaGGATGGCTCGGCCAATCTC +
Preference number: 4 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHIHHEG*DGSANL
Trigger: GAGATTGGCCGAGCCATCGCAACCCTCATGGTGGAT...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTCCTCCCCGATTTCGTaGATAGCTGGCATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPSSPIS*IAGISA
Trigger: AGCTGAGATGCCAGCTATGCACGAAATCGGGGAGGA...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp CACCTCTCTCCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCTGCCAGCCATGGCAGTaGCCAGGAAGCTCTCCATTA +
Preference number: 4 (lower is better)
Translates to: HLSPIVLLVVVCEVELRFCQPWQ*PGSSPL
Trigger: TAATGGAGAGCTTCCTGGGCACTGCCATGGCTGGCA...GAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGGAGAGAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp CTGAGGCTAGCTGGCTTTCCAGGAAAGCTGAGGGTACACAGTGAGAACCCATCTAGAGGCAGAACAAGCTaGCAGCCATGGCAGTGCCCA +
Preference number: 4 (lower is better)
Translates to: LRLAGFPGKLRVHSENPSRGRTS*QPWQCP
Trigger: TGGGCACTGCCATGGCTGGCAGCTTGTTCTGCCTCT...AGATGGGTTCTCACTGTGTACCCTCAGCTTTCCTGGAAAGCCAGCTAGCCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGTCAGGCACTCCTTCTTaGTCAGCAGGGACCAGTCCA +
Preference number: 4 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRSGTPS*SAGTSP
Trigger: TGGACTGGTCCCTGCTGAGCAAGAAGGAGTGCCTGA...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp CACCTCTCTCCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCACTCCAGTAACTCTCTaGTCCCTGACCCCCAGGAAC +
Preference number: 4 (lower is better)
Translates to: HLSPIVLLVVVCEVELRFTPVTL*SLTPRN
Trigger: GTTCCTGGGGGTCAGGGAGCAGAGAGTTACTGGAGT...GAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGGAGAGAGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTGTTCCCAGAACTGGATaGCATTCAGGGAGGCCACAC +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRVPRTG*HSGRPH
Trigger: GTGTGGCCTCCCTGAATGGCATCCAGTTCTGGGAAC...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp TCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGGCGTGGTCCGGCTGGTaGTTGGCTGGCATGAGGAAA +
Preference number: 4 (lower is better)
Translates to: SVRLSSDSISILTCGTMKAWSGW*LAGMRK
Trigger: TTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGC...CTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATTCCCCCAGGATGTCCTaGAGCTGCTCAGCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYSPRMS*SCSAAG
Trigger: TCCAGCTGCTGAGCAGCTGCAGGACATCCTGGGGGA...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTCTGCAAGGGAACGGTaGATGGGCTTCTTGGTTTGG +
Preference number: 4 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPSARER*MGFLVW
Trigger: CCAAACCAAGAAGCCCATCCACCGTTCCCTTGCAGA...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTGCAAACCTGCAGGACCGCCCACGAGCACGTTaGAAGCTTCTGAGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: DFKEKEVKAMSYRANLQDRPRAR*KLLSPW
Trigger: CCAAGGACTCAGAAGCTTCCAACGTGCTCGTGGGCG...GTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCTCACCCCTCCCAGCATaGCAGACTGGACAAGACGAA +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTSPLPA*QTGQDE
Trigger: TTCGTCTTGTCCAGTCTGCCATGCTGGGAGGGGTGA...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp CACCTCTCTCCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCTCACCCCTCCCAGCATaGCAGACTGGACAAGACGAA +
Preference number: 4 (lower is better)
Translates to: HLSPIVLLVVVCEVELRFSPLPA*QTGQDE
Trigger: TTCGTCTTGTCCAGTCTGCCATGCTGGGAGGGGTGA...GAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGGAGAGAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACAGGCACGTGCAGCTTTaGGGTCTGCAGGCCAAAACA +
Preference number: 4 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHRHVQL*GLQAKT
Trigger: TGTTTTGGCCTGCAGACCCCAAAGCTGCACGTGCCT...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCAGCGTTCCCAGAACTaGATGCCATTCAGGGAGGCC +
Preference number: 4 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTQRSQN*MPFREA
Trigger: GGCCTCCCTGAATGGCATCCAGTTCTGGGAACGCTG...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGCGGCGAAGGGGCACGTaGCGCAGGAAAGCGTGGTCC +
Preference number: 4 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLRRRGT*RRKAWS
Trigger: GGACCACGCTTTCCTGCGCCACGTGCCCCTTCGCCG...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTGAGGGAGGAAGGAACTaGGGCATTGCCACCTCCTTC +
Preference number: 4 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTEGGRN*GIATSF
Trigger: GAAGGAGGTGGCAATGCCCCAGTTCCTTCCTCCCTC...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
3UTR CAA 72 bp CTGTGTCTATGTCGGAGGTCCCTGAAAGGCCTCCAGTaGTCTCTCTGGTCGGTGGGTAAGGAAGCAGGTGTA +
Preference number: 4 (lower is better)
Translates to: LCLCRRSLKGLQ*SLWSVGKEAGV
Trigger: TACACCTGCTTCCTTACCCACCGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACATAGACACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTATAGATCATCCACCATaGGGGTTGCGATGGCTCGGC +
Preference number: 4 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTIDHPP*GLRWLG
Trigger: GCCGAGCCATCGCAACCCTCATGGTGGATGATCTAT...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCTGGGTGGCTCAATTCTaGTGTTTGGGTCCCACTCTC +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTWVAQF*CLGPTL
Trigger: GAGAGTGGGACCCAAACATCAGAATTGAGCCACCCA...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGGGTGCTTGGCTGGCATaGGGAAAAGCTTACAGCGTT +
Preference number: 4 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRGAWLA*GKAYSV
Trigger: AACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACC...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp TGGCGGCACATGCCTTTAATCTCAGAGACAGGTGGGTCTCTGAATTCTGAGGCTGGATCTGCACCAGGGTaGACAGGTGAATGCGGCGAA +
Preference number: 4 (lower is better)
Translates to: WRHMPLISETGGSLNSEAGSAPG*TGECGE
Trigger: TTCGCCGCATTCACCTGTTCACCCTGGTGCAGATCC...AGCCTCAGAATTCAGAGACCCACCTGTCTCTGAGATTAAAGGCATGTGCCGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTGGATCTGCACCAGGGTaGACAGGTGAATGCGGCGAA +
Preference number: 4 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSGSAPG*TGECGE
Trigger: TTCGCCGCATTCACCTGTTCACCCTGGTGCAGATCC...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCTGTCTGCAGGCAGGTaGGGAGCTCAAAGAGACTGT +
Preference number: 4 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTLSAGR*GAQRDC
Trigger: ACAGTCTCTTTGAGCTCCGCACCTGCCTGCAGACAG...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCCATCTGGCCCGGCTCTaGCAGAGAGAACACAGATTT +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTHLARL*QREHRF
Trigger: AAATCTGTGTTCTCTCTGGCAGAGCCGGGCCAGATG...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp TCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGTGCCAGCCATGGCAGTaGCCAGGAAGCTCTCCATTA +
Preference number: 4 (lower is better)
Translates to: SSVRLSSDSISILTCGTMCQPWQ*PGSSPL
Trigger: TAATGGAGAGCTTCCTGGGCACTGCCATGGCTGGCA...CATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp TCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGAGAGGCAGAACAAGCTaGCAGCCATGGCAGTGCCCA +
Preference number: 4 (lower is better)
Translates to: SVRLSSDSISILTCGTMKRGRTS*QPWQCP
Trigger: TGGGCACTGCCATGGCTGGCAGCTTGTTCTGCCTCT...CTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCAGGATGATAAGAGGCTaGCCCGAGAAGAGGCAGAAC +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTRMIRG*PEKRQN
Trigger: GTTCTGCCTCTTCTCGGGGCAGCCTCTTATCATCCT...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACAGGATGATAAGAGGCTaGCCCGAGAAGAGGCAGAAC +
Preference number: 4 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHRMIRG*PEKRQN
Trigger: GTTCTGCCTCTTCTCGGGGCAGCCTCTTATCATCCT...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTTGCAGCTTTGGGGTCTaGAGGCCAAAACAGGCATCG +
Preference number: 4 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTCSFGV*RPKQAS
Trigger: CGATGCCTGTTTTGGCCTGCAGACCCCAAAGCTGCA...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp CACCTCTCTCCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCCGGTTGACAATGACTaGGGTGATCTGCTGGTCCAT +
Preference number: 4 (lower is better)
Translates to: HLSPIVLLVVVCEVELRFPVDND*GDLLVH
Trigger: ATGGACCAGCAGATCACCGCAGTCATTGTCAACCGG...GAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGGAGAGAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCTGCCACCTCCTTCTCTaGCGTCTCATGGACCTCTTT +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTCHLLL*RLMDLF
Trigger: AAAGAGGTCCATGAGACGGCAGAGAAGGAGGTGGCA...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGGACCACTGGACTTTTTaGAGGCCTGAAAGATGTCCC +
Preference number: 4 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPDHWTF*RPERCP
Trigger: GGGACATCTTTCAGGCCTGCAAAAAGTCCAGTGGTC...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCGGTGGATGGGCTTCTTaGTTTGGTGACGATGCTTCC +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTGGWAS*FGDDAS
Trigger: GGAAGCATCGTCACCAAACCAAGAAGCCCATCCACC...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTGCAAACCTGCAGGACAGGCACGTGCAGCTTTaGGGTCTGCAGGCCAAAACA +
Preference number: 4 (lower is better)
Translates to: DFKEKEVKAMSYRANLQDRHVQL*GLQAKT
Trigger: TGTTTTGGCCTGCAGACCCCAAAGCTGCACGTGCCT...GTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCCAGGCCAGGTCATGCTaGGAGAAAATCAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTQARSC*EKIKSR
Trigger: CCTGGACTTGATTTTCTCCCAGCATGACCTGGCCTG...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp CCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCTCAGGAGCACGTAGCTaGCCCTCTCCCGGAGCTCAG +
Preference number: 4 (lower is better)
Translates to: PGLVQRKMNSFVLERVWISGARS*PSPGAQ
Trigger: CTGAGCTCCGGGAGAGGGTCAGCTACGTGCTCCTGA...GATCCAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATATAGATCATCCACCATaGGGGTTGCGATGGCTCGGC +
Preference number: 4 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYIDHPP*GLRWLG
Trigger: GCCGAGCCATCGCAACCCTCATGGTGGATGATCTAT...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTGCAAACCTGCAGGACTGGGTGGCTCAATTCTaGTGTTTGGGTCCCACTCTC +
Preference number: 4 (lower is better)
Translates to: DFKEKEVKAMSYRANLQDWVAQF*CLGPTL
Trigger: GAGAGTGGGACCCAAACATCAGAATTGAGCCACCCA...GTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp CTGAGGCTAGCTGGCTTTCCAGGAAAGCTGAGGGTACACAGTGAGAACCCATCTTGGGTGGCTCAATTCTaGTGTTTGGGTCCCACTCTC +
Preference number: 4 (lower is better)
Translates to: LRLAGFPGKLRVHSENPSWVAQF*CLGPTL
Trigger: GAGAGTGGGACCCAAACATCAGAATTGAGCCACCCA...AGATGGGTTCTCACTGTGTACCCTCAGCTTTCCTGGAAAGCCAGCTAGCCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp TCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGGCACTGGATGGCTaGGTGAAGACCAATCCAGAG +
Preference number: 4 (lower is better)
Translates to: SSVRLSSDSISILTCGTMKALDG*VKTNPE
Trigger: CTCTGGATTGGTCTTCACTCAGCCATCCAGTGCCTT...CATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp TCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGGATGGCAGCCATGGTTaGCTTAAGGATCCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: SSVRLSSDSISILTCGTMDGSHG*LKDPEQ
Trigger: CTGCTCTGGATCCTTAAGTCAACCATGGCTGCCATC...CATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATTGGACACATGGGGCTTaGTCCATCGTTCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: VVCEVELRFHLYPHLRHHWTHGA*SIVLLL
Trigger: AAGGAGGAGAACGATGGAGCAAGCCCCATGTGTCCA...ATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATTCCTCCCCGATTTCGTaGATAGCTGGCATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: VVCEVELRFHLYPHLRHHSSPIS*IAGISA
Trigger: AGCTGAGATGCCAGCTATGCACGAAATCGGGGAGGA...ATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp CTGAGGCTAGCTGGCTTTCCAGGAAAGCTGAGGGTACACAGTGAGAACCCATCTAGGATGATAAGAGGCTaGCCCGAGAAGAGGCAGAAC +
Preference number: 4 (lower is better)
Translates to: LRLAGFPGKLRVHSENPSRMIRG*PEKRQN
Trigger: GTTCTGCCTCTTCTCGGGGCAGCCTCTTATCATCCT...AGATGGGTTCTCACTGTGTACCCTCAGCTTTCCTGGAAAGCCAGCTAGCCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATTGCAGCTTTGGGGTCTaGAGGCCAAAACAGGCATCG +
Preference number: 4 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYCSFGV*RPKQAS
Trigger: CGATGCCTGTTTTGGCCTGCAGACCCCAAAGCTGCA...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp TCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACTCCAGTAACTCTCTaGTCCCTGACCCCCAGGAAC +
Preference number: 4 (lower is better)
Translates to: SVRLSSDSISILTCGTMKTPVTL*SLTPRN
Trigger: GTTCCTGGGGGTCAGGGAGCAGAGAGTTACTGGAGT...CTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGATCCAGGCCAGGTCATaGTGGGAGAAAATCAAGTCC +
Preference number: 4 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRIQARS*WEKIKS
Trigger: GGACTTGATTTTCTCCCAGCATGACCTGGCCTGGAT...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp TCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGAAGGAACTGGGGCATTaGCACCTCCTTCTCTGCCGT +
Preference number: 4 (lower is better)
Translates to: SVRLSSDSISILTCGTMKKELGH*HLLLCR
Trigger: ACGGCAGAGAAGGAGGTGGCAATGCCCCAGTTCCTT...CTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp AAAGGCCTCCAGTTGTCTCTCTGGTCGGTGGGTAAGGAAGCAGGTGTAAGGCTTGGTGGATGGGCTTCTTaGTTTGGTGACGATGCTTCC +
Preference number: 4 (lower is better)
Translates to: KGLQLSLWSVGKEAGVRLGGWAS*FGDDAS
Trigger: GGAAGCATCGTCACCAAACCAAGAAGCCCATCCACC...AAGCCTTACACCTGCTTCCTTACCCACCGACCAGAGAGACAACTGGAGGCCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp GTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATCTCAATTCTGATGTTTaGGTCCCACTCTCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: VVCEVELRFHLYPHLRHHLNSDV*VPLSRG
Trigger: CCCCCTGGAGAGTGGGACCCAAACATCAGAATTGAG...ATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp CTGAGGCTAGCTGGCTTTCCAGGAAAGCTGAGGGTACACAGTGAGAACCCATCTCTCAATTCTGATGTTTaGGTCCCACTCTCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: LRLAGFPGKLRVHSENPSLNSDV*VPLSRG
Trigger: CCCCCTGGAGAGTGGGACCCAAACATCAGAATTGAG...AGATGGGTTCTCACTGTGTACCCTCAGCTTTCCTGGAAAGCCAGCTAGCCTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTGATTTCGTGCATAGCTaGCATCTCAGCTTCGTCGCC +
Preference number: 4 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTDFVHS*HLSFVA
Trigger: GGCGACGAAGCTGAGATGCCAGCTATGCACGAAATC...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp TCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGGATTTCGTGCATAGCTaGCATCTCAGCTTCGTCGCC +
Preference number: 4 (lower is better)
Translates to: SSVRLSSDSISILTCGTMDFVHS*HLSFVA
Trigger: GGCGACGAAGCTGAGATGCCAGCTATGCACGAAATC...CATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACATCATAGAAGTCGCTTaGGAACCAGGGCAGCTTCCT +
Preference number: 4 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHIIEVA*EPGQLP
Trigger: AGGAAGCTGCCCTGGTTCCCAAGCGACTTCTATGAT...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTACAGAACAGCAGAGATaGACTGGAGGTGGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRTEQQR*TGGGSH
Trigger: ATGGCTTCCACCTCCAGTCCATCTCTGCTGTTCTGT...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACGGATGGAGAATACAATaGAGAAGTCAGCCACCAGGG +
Preference number: 4 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHGWRIQ*RSQPPG
Trigger: CCCTGGTGGCTGACTTCTCCATTGTATTCTCCATCC...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGCACGTTGGAAGCTTCTaGGTCCTTGGGAATCTTCTT +
Preference number: 4 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRHVGSF*VLGNLL
Trigger: AAGAAGATTCCCAAGGACTCAGAAGCTTCCAACGTG...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp TCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGTACAGCCGAGGTAGATaGACAGAACAGCAGAGATGG +
Preference number: 4 (lower is better)
Translates to: SSVRLSSDSISILTCGTMYSRGR*TEQQRW
Trigger: CCATCTCTGCTGTTCTGTTCATCTACCTCGGCTGTA...CATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATGGCCATTGGCCTTGCTaGAGTCAAAGAGGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYGHWPC*SQRGAS
Trigger: AGAAGCTCCTCTTTGACTTCAGCAAGGCCAATGGCC...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTGGCCATTGGCCTTGCTaGAGTCAAAGAGGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSGHWPC*SQRGAS
Trigger: AGAAGCTCCTCTTTGACTTCAGCAAGGCCAATGGCC...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GAGTCCGTAACGATGCTACAGTTTAATCATCTGGAGAGAGTGCTACTACAGATCTGTGGGCGATGGAGATaGCCGTGGCAGCCACGTACC +
Preference number: 4 (lower is better)
Translates to: ESVTMLQFNHLERVLLQICGRWR*PWQPRT
Trigger: GGTACGTGGCTGCCACGGTCATCTCCATCGCCCACA...GATCTGTAGTAGCACTCTCTCCAGATGATTAAACTGTAGCATCGTTACGGACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp TGGCGGCACATGCCTTTAATCTCAGAGACAGGTGGGTCTCTGAATTCTGAGGCTGATGGCAGCCATGGTTaGCTTAAGGATCCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: WRHMPLISETGGSLNSEADGSHG*LKDPEQ
Trigger: CTGCTCTGGATCCTTAAGTCAACCATGGCTGCCATC...AGCCTCAGAATTCAGAGACCCACCTGTCTCTGAGATTAAAGGCATGTGCCGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATTGGACACATGGGGCTTaGTCCATCGTTCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYWTHGA*SIVLLL
Trigger: AAGGAGGAGAACGATGGAGCAAGCCCCATGTGTCCA...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTAGCTCAAAGAGACTGTaGAGGGACAGCGTGGACACA +
Preference number: 4 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSSSKRL*RDSVDT
Trigger: TGTGTCCACGCTGTCCCTGCACAGTCTCTTTGAGCT...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATGGTGGATGGGCTTCTTaGTTTGGTGACGATGCTTCC +
Preference number: 4 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYGGWAS*FGDDAS
Trigger: GGAAGCATCGTCACCAAACCAAGAAGCCCATCCACC...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp TCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGTCTGCAAGGGAACGGTaGATGGGCTTCTTGGTTTGG +
Preference number: 4 (lower is better)
Translates to: SVRLSSDSISILTCGTMKSARER*MGFLVW
Trigger: CCAAACCAAGAAGCCCATCCACCGTTCCCTTGCAGA...CTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTCCGCTGGTCTGTGTTTaGGGTATGAGAGATGTCATT +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRPLVCV*GMRDVI
Trigger: AATGACATCTCTCATACCCCAAACACAGACCAGCGG...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCAGGGCCGGCAGGATGCTaGCAGGGTACACCCACCAAG +
Preference number: 4 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSGPAGC*QGTPTK
Trigger: CTTGGTGGGTGTACCCTGCCAGCATCCTGCCGGCCC...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGAAAGCGTGGTCCGGCTaGTGCTTGGCTGGCATGAGG +
Preference number: 4 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLKAWSG*CLAGMR
Trigger: CCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTT...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCAGTGAAGAGCTGGCAGTCTGGCGCAGGAAAGCGTaGTCCGGCTGGTGCTTGGCT +
Preference number: 4 (lower is better)
Translates to: KMNSFVLERVWISEELAVWRRKA*SGWCLA
Trigger: AGCCAAGCACCAGCCGGACCACGCTTTCCTGCGCCA...GACTGCCAGCTCTTCACTGATCCAAACCCTTTCCAACACAAAACTGTTCATCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCCAGTGGATACCGTTTTaGGGATCAGATGGGATACCT +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTQWIPF*GSDGIP
Trigger: AGGTATCCCATCTGATCCCCAAAACGGTATCCACTG...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGGTTTCAGGGACCACTaGACTTTTTGCAGGCCTGAA +
Preference number: 4 (lower is better)
Translates to: VVCEVELRFHLYPHLRHHGFRDH*TFCRPE
Trigger: TTCAGGCCTGCAAAAAGTCCAGTGGTCCCTGAAACC...ATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTGCAAACCTGCAGGACCACGTTGGAAGCTTCTaGGTCCTTGGGAATCTTCTT +
Preference number: 4 (lower is better)
Translates to: DFKEKEVKAMSYRANLQDHVGSF*VLGNLL
Trigger: AAGAAGATTCCCAAGGACTCAGAAGCTTCCAACGTG...GTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCAGTGAAGAGCTGGCAGTCTCCTCAGTGGAGCGGTaGAGAGTTGGGCCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: KMNSFVLERVWISEELAVSSVER*RVGPAE
Trigger: CTCAGCAGGCCCAACTCTGCACCGCTCCACTGAGGA...GACTGCCAGCTCTTCACTGATCCAAACCCTTTCCAACACAAAACTGTTCATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp CACCTCTCTCCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCGACAAGACGAACAAATaGAATGAATGGCTGGTCCAG +
Preference number: 4 (lower is better)
Translates to: HLSPIVLLVVVCEVELRFDKTNK*NEWLVQ
Trigger: CTGGACCAGCCATTCATTGCATTTGTTCGTCTTGTC...GAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGGAGAGAGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATATCCAGGCCAGGTCATaGTGGGAGAAAATCAAGTCC +
Preference number: 4 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYIQARS*WEKIKS
Trigger: GGACTTGATTTTCTCCCAGCATGACCTGGCCTGGAT...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTTCCTTCCACTCCATCTaGTCCCCATCATGCTGTAGA +
Preference number: 4 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSSFHSI*SPSCCR
Trigger: TCTACAGCATGATGGGGACCAGATGGAGTGGAAGGA...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp CACCTCTCTCCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCAAATTTTATCCACCTaGCTGACTCCTTCCACTCCA +
Preference number: 4 (lower is better)
Translates to: HLSPIVLLVVVCEVELRFQILST*LTPSTP
Trigger: TGGAGTGGAAGGAGTCAGCCAGGTGGATAAAATTTG...GAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGGAGAGAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATAATGCAATGAATGGCTaGTCCAGGAAGTCCACCTCG +
Preference number: 4 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYNAMNG*SRKSTS
Trigger: CGAGGTGGACTTCCTGGACCAGCCATTCATTGCATT...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTAATGCAATGAATGGCTaGTCCAGGAAGTCCACCTCG +
Preference number: 4 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSNAMNG*SRKSTS
Trigger: CGAGGTGGACTTCCTGGACCAGCCATTCATTGCATT...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGAACAAATGCAATGAATaGCTGGTCCAGGAAGTCCAC +
Preference number: 4 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRNKCNE*LVQEVH
Trigger: GTGGACTTCCTGGACCAGCCATTCATTGCATTTGTT...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp TGGCGGCACATGCCTTTAATCTCAGAGACAGGTGGGTCTCTGAATTCTGAGGCTATCATAGAAGTCGCTTaGGAACCAGGGCAGCTTCCT +
Preference number: 4 (lower is better)
Translates to: WRHMPLISETGGSLNSEAIIEVA*EPGQLP
Trigger: AGGAAGCTGCCCTGGTTCCCAAGCGACTTCTATGAT...AGCCTCAGAATTCAGAGACCCACCTGTCTCTGAGATTAAAGGCATGTGCCGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTGGATGGAGAATACAATaGAGAAGTCAGCCACCAGGG +
Preference number: 4 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSGWRIQ*RSQPPG
Trigger: CCCTGGTGGCTGACTTCTCCATTGTATTCTCCATCC...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGCAGCGTTCCCAGAACTaGATGCCATTCAGGGAGGCC +
Preference number: 4 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLQRSQN*MPFREA
Trigger: GGCCTCCCTGAATGGCATCCAGTTCTGGGAACGCTG...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp GTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATTTCTCTGCCGTCTCATaGACCTCTTTCCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: VVCEVELRFHLYPHLRHHFSAVS*TSFLLF
Trigger: GAAGAGAAGGAAAGAGGTCCATGAGACGGCAGAGAA...ATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCAGTGGATACCGTTTTaGGGATCAGATGGGATACCT +
Preference number: 4 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTQWIPF*GSDGIP
Trigger: AGGTATCCCATCTGATCCCCAAAACGGTATCCACTG...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCAGGGAAATCTTGTTCTaGCTGTCTCCTCTTGTAGCT +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTREILF*LSPLVA
Trigger: AGCTACAAGAGGAGACAGCCAGAACAAGATTTCCCT...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp AGCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAATCAGGAGCACGTAGCTaGCCCTCTCCCGGAGCTCAG +
Preference number: 4 (lower is better)
Translates to: SYCKIVQGERGPTQIHHQSGARS*PSPGAQ
Trigger: CTGAGCTCCGGGAGAGGGTCAGCTACGTGCTCCTGA...TTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGGCTTCTTGGTTTGGTaGCGATGCTTCCTCAGGAGC +
Preference number: 4 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLGFLVW*RCFLRS
Trigger: GCTCCTGAGGAAGCATCGTCACCAAACCAAGAAGCC...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp CACCTCTCTCCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCTCTGTGTTTGGGGTATaGGAGATGTCATTCATGCTT +
Preference number: 4 (lower is better)
Translates to: HLSPIVLLVVVCEVELRFSVFGV*EMSFML
Trigger: AAGCATGAATGACATCTCTCATACCCCAAACACAGA...GAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGGAGAGAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp TGGCGGCACATGCCTTTAATCTCAGAGACAGGTGGGTCTCTGAATTCTGAGGCTCACGTTGGAAGCTTCTaGGTCCTTGGGAATCTTCTT +
Preference number: 4 (lower is better)
Translates to: WRHMPLISETGGSLNSEAHVGSF*VLGNLL
Trigger: AAGAAGATTCCCAAGGACTCAGAAGCTTCCAACGTG...AGCCTCAGAATTCAGAGACCCACCTGTCTCTGAGATTAAAGGCATGTGCCGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACAAGGTCCTAATAGTATaGACAGAAATCTGGTGGGGA +
Preference number: 4 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHKVLIV*TEIWWG
Trigger: TCCCCACCAGATTTCTGTTCATACTATTAGGACCTT...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGAGGGCAGCTTCCTCTTaGCATCCAGACACAGTCCTC +
Preference number: 4 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLRAASS*HPDTVL
Trigger: GAGGACTGTGTCTGGATGTCAAGAGGAAGCTGCCCT...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp AGCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAAACCAGGGTGAACAGGTaGATGCGGCGAAGGGGCACG +
Preference number: 4 (lower is better)
Translates to: SYCKIVQGERGPTQIHHQTRVNR*MRRRGT
Trigger: CGTGCCCCTTCGCCGCATTCACCTGTTCACCCTGGT...TTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp CTGAGGCTAGCTGGCTTTCCAGGAAAGCTGAGGGTACACAGTGAGAACCCATCTGAGAGATGTCATTCATaGTTCTACTCTGGGCATGAC +
Preference number: 4 (lower is better)
Translates to: LRLAGFPGKLRVHSENPSERCHS*FYSGHD
Trigger: GTCATGCCCAGAGTAGAAGCATGAATGACATCTCTC...AGATGGGTTCTCACTGTGTACCCTCAGCTTTCCTGGAAAGCCAGCTAGCCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AAAGGCCTCCAGTTGTCTCTCTGGTCGGTGGGTAAGGAAGCAGGTGTAAGGCTTGACAAGACGAACAAATaGAATGAATGGCTGGTCCAG +
Preference number: 4 (lower is better)
Translates to: KGLQLSLWSVGKEAGVRLDKTNK*NEWLVQ
Trigger: CTGGACCAGCCATTCATTGCATTTGTTCGTCTTGTC...AAGCCTTACACCTGCTTCCTTACCCACCGACCAGAGAGACAACTGGAGGCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGATCCACCATGAGGGTTaGGATGGCTCGGCCAATCTC +
Preference number: 4 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLIHHEG*DGSANL
Trigger: GAGATTGGCCGAGCCATCGCAACCCTCATGGTGGAT...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp CCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCTCAGGCACTCCTTCTTaGTCAGCAGGGACCAGTCCA +
Preference number: 4 (lower is better)
Translates to: PGLVQRKMNSFVLERVWISGTPS*SAGTSP
Trigger: TGGACTGGTCCCTGCTGAGCAAGAAGGAGTGCCTGA...GATCCAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGAAGGAACTGGGGCATTaGCACCTCCTTCTCTGCCGT +
Preference number: 4 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLKELGH*HLLLCR
Trigger: ACGGCAGAGAAGGAGGTGGCAATGCCCCAGTTCCTT...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
CDS-3UTR CCA 90 bp AAAGGCCTCCAGTTGTCTCTCTGGTCGGTGGGTAAGGAAGCAGGTGTAAGGCTTAACAAATGCAATGAATaGCTGGTCCAGGAAGTCCAC +
Preference number: 4 (lower is better)
Translates to: KGLQLSLWSVGKEAGVRLNKCNE*LVQEVH
Trigger: GTGGACTTCCTGGACCAGCCATTCATTGCATTTGTT...AAGCCTTACACCTGCTTCCTTACCCACCGACCAGAGAGACAACTGGAGGCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTATGGGATACCTTCCATaGGGATCTTTACAACTGAGG +
Preference number: 4 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTMGYLP*GSLQLR
Trigger: CCTCAGTTGTAAAGATCCCCATGGAAGGTATCCCAT...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATTTTCTGGCAACACAGTaGATACCGTTTTGGGGATCA +
Preference number: 4 (lower is better)
Translates to: VVCEVELRFHLYPHLRHHFLATQ*IPFWGS
Trigger: TGATCCCCAAAACGGTATCCACTGTGTTGCCAGAAA...ATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTTTTCTGGCAACACAGTaGATACCGTTTTGGGGATCA +
Preference number: 4 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTFLATQ*IPFWGS
Trigger: TGATCCCCAAAACGGTATCCACTGTGTTGCCAGAAA...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GACTTCAAGGAGAAGGAGGTGAAAGCCATGTCCTACCGTGCAAACCTGCAGGACTCTGTGTTTGGGGTATaGGAGATGTCATTCATGCTT +
Preference number: 4 (lower is better)
Translates to: DFKEKEVKAMSYRANLQDSVFGV*EMSFML
Trigger: AAGCATGAATGACATCTCTCATACCCCAAACACAGA...GTCCTGCAGGTTTGCACGGTAGGACATGGCTTTCACCTCCTTCTCCTTGAAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTTGGGAATCTTCTTCATaGATTTGTTTTTCCGCTGGT +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRWESSS*ICFSAG
Trigger: ACCAGCGGAAAAACAAATTCATGAAGAAGATTCCCA...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GAGTCCGTAACGATGCTACAGTTTAATCATCTGGAGAGAGTGCTACTACAGATCATAGATCATCCACCATaGGGGTTGCGATGGCTCGGC +
Preference number: 4 (lower is better)
Translates to: ESVTMLQFNHLERVLLQIIDHPP*GLRWLG
Trigger: GCCGAGCCATCGCAACCCTCATGGTGGATGATCTAT...GATCTGTAGTAGCACTCTCTCCAGATGATTAAACTGTAGCATCGTTACGGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp CCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCGGCCATTGGCCTTGCTaGAGTCAAAGAGGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: PGLVQRKMNSFVLERVWIGHWPC*SQRGAS
Trigger: AGAAGCTCCTCTTTGACTTCAGCAAGGCCAATGGCC...GATCCAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCAGGATCTGCACCAGGGTaGACAGGTGAATGCGGCGAA +
Preference number: 4 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSGSAPG*TGECGE
Trigger: TTCGCCGCATTCACCTGTTCACCCTGGTGCAGATCC...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTAGTCCATCCTCTATCTaGTTCTCAATGACATCATCT +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRSPSSI*FSMTSS
Trigger: AGATGATGTCATTGAGAAGCAGATAGAGGATGGACT...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATGAGAGATGTCATTCATaGTTCTACTCTGGGCATGAC +
Preference number: 4 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYERCHS*FYSGHD
Trigger: GTCATGCCCAGAGTAGAAGCATGAATGACATCTCTC...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp AAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCAGTGAAGAGCTGGCAGTCTGCCAGCCATGGCAGTaGCCAGGAAGCTCTCCATTA +
Preference number: 4 (lower is better)
Translates to: KMNSFVLERVWISEELAVCQPWQ*PGSSPL
Trigger: TAATGGAGAGCTTCCTGGGCACTGCCATGGCTGGCA...GACTGCCAGCTCTTCACTGATCCAAACCCTTTCCAACACAAAACTGTTCATCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCAGTGAAGAGCTGGCAGTCTCAGGCACTCCTTCTTaGTCAGCAGGGACCAGTCCA +
Preference number: 4 (lower is better)
Translates to: KMNSFVLERVWISEELAVSGTPS*SAGTSP
Trigger: TGGACTGGTCCCTGCTGAGCAAGAAGGAGTGCCTGA...GACTGCCAGCTCTTCACTGATCCAAACCCTTTCCAACACAAAACTGTTCATCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGGCGTGGTCCGGCTGGTaGTTGGCTGGCATGAGGAAA +
Preference number: 4 (lower is better)
Translates to: RMISLLKANWFSSSFGYWAWSGW*LAGMRK
Trigger: TTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGC...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATAACAAATGCAATGAATaGCTGGTCCAGGAAGTCCAC +
Preference number: 4 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYNKCNE*LVQEVH
Trigger: GTGGACTTCCTGGACCAGCCATTCATTGCATTTGTT...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCAACAGAGCCATTCATCTaGCCCGGCTCTGCCAGAGAG +
Preference number: 4 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSTEPFI*PGSARE
Trigger: CTCTCTGGCAGAGCCGGGCCAGATGAATGGCTCTGT...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp GCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAAGCAGCGTTCCCAGAACTaGATGCCATTCAGGGAGGCC +
Preference number: 4 (lower is better)
Translates to: AIAKLCREREDLLKYIIKQRSQN*MPFREA
Trigger: GGCCTCCCTGAATGGCATCCAGTTCTGGGAACGCTG...CTTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCGAGAGTAACTCCAACTaGAAGATCTTTTTCTGGCAA +
Preference number: 4 (lower is better)
Translates to: SSSVRLSSDSISILTCGTESNSN*KIFFWQ
Trigger: TTGCCAGAAAAAGATCTTCCAGTTGGAGTTACTCTC...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
3UTR CAA 72 bp CCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTaGGAAAGGGTTTGGATCAGTGAAGAGCTGGCAGTC +
Preference number: 4 (lower is better)
Translates to: PGLVQRKMNSFV*ERVWISEELAV
Trigger: GACTGCCAGCTCTTCACTGATCCAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp CTGAGGCTAGCTGGCTTTCCAGGAAAGCTGAGGGTACACAGTGAGAACCCATCTTGGGAATCTTCTTCATaGATTTGTTTTTCCGCTGGT +
Preference number: 4 (lower is better)
Translates to: LRLAGFPGKLRVHSENPSWESSS*ICFSAG
Trigger: ACCAGCGGAAAAACAAATTCATGAAGAAGATTCCCA...AGATGGGTTCTCACTGTGTACCCTCAGCTTTCCTGGAAAGCCAGCTAGCCTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp AACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCACTGGATGGCTGAGTaGAGACCAATCCAGAGGCGG +
Preference number: 4 (lower is better)
Translates to: NLQDSFRPSIPSSHLDINHWMAE*RPIQRR
Trigger: CCGCCTCTGGATTGGTCTTCACTCAGCCATCCAGTG...ATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp GAGTCCGTAACGATGCTACAGTTTAATCATCTGGAGAGAGTGCTACTACAGATCGATGGCAGCCATGGTTaGCTTAAGGATCCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: ESVTMLQFNHLERVLLQIDGSHG*LKDPEQ
Trigger: CTGCTCTGGATCCTTAAGTCAACCATGGCTGCCATC...GATCTGTAGTAGCACTCTCTCCAGATGATTAAACTGTAGCATCGTTACGGACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp AGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTACTGGAAACCCAATATaGATTGAAGGGAAATCTTGT +
Preference number: 4 (lower is better)
Translates to: SSDSISILTCGTMKTGLRTGNPI*IEGKSC
Trigger: ACAAGATTTCCCTTCAATTCATATTGGGTTTCCAGT...ACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp CCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCGTAGCTGAAAGCAGGTaGAGCCGGGCAAGAGATTTT +
Preference number: 4 (lower is better)
Translates to: PGLVQRKMNSFVLERVWIVAESR*SRARDF
Trigger: AAAATCTCTTGCCCGGCTTCACCTGCTTTCAGCTAC...GATCCAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp GCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAAGCTGTCTGCAGGCAGGTaGGGAGCTCAAAGAGACTGT +
Preference number: 4 (lower is better)
Translates to: AIAKLCREREDLLKYIIKLSAGR*GAQRDC
Trigger: ACAGTCTCTTTGAGCTCCGCACCTGCCTGCAGACAG...CTTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AAAGGCCTCCAGTTGTCTCTCTGGTCGGTGGGTAAGGAAGCAGGTGTAAGGCTTAAATTCATCAATCCCTaGGATCAGATCTTCTCGGTT +
Preference number: 4 (lower is better)
Translates to: KGLQLSLWSVGKEAGVRLKFINP*DQIFSV
Trigger: AACCGAGAAGATCTGATCGCAGGGATTGATGAATTT...AAGCCTTACACCTGCTTCCTTACCCACCGACCAGAGAGACAACTGGAGGCCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp TCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAATTCATCAATCCCTaGGATCAGATCTTCTCGGTT +
Preference number: 4 (lower is better)
Translates to: SSVRLSSDSISILTCGTMKFINP*DQIFSV
Trigger: AACCGAGAAGATCTGATCGCAGGGATTGATGAATTT...CATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp GAGTCCGTAACGATGCTACAGTTTAATCATCTGGAGAGAGTGCTACTACAGATCCATCTGGCCCGGCTCTaGCAGAGAGAACACAGATTT +
Preference number: 4 (lower is better)
Translates to: ESVTMLQFNHLERVLLQIHLARL*QREHRF
Trigger: AAATCTGTGTTCTCTCTGGCAGAGCCGGGCCAGATG...GATCTGTAGTAGCACTCTCTCCAGATGATTAAACTGTAGCATCGTTACGGACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp GAGTCCGTAACGATGCTACAGTTTAATCATCTGGAGAGAGTGCTACTACAGATCCCGGTTGACAATGACTaGGGTGATCTGCTGGTCCAT +
Preference number: 4 (lower is better)
Translates to: ESVTMLQFNHLERVLLQIPVDND*GDLLVH
Trigger: ATGGACCAGCAGATCACCGCAGTCATTGTCAACCGG...GATCTGTAGTAGCACTCTCTCCAGATGATTAAACTGTAGCATCGTTACGGACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp CCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCTCCTTCCACTCCATCTaGTCCCCATCATGCTGTAGA +
Preference number: 4 (lower is better)
Translates to: PGLVQRKMNSFVLERVWISFHSI*SPSCCR
Trigger: TCTACAGCATGATGGGGACCAGATGGAGTGGAAGGA...GATCCAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCGCCCACGAGCACGTTaGAAGCTTCTGAGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: NLQDSFRPSIPSSHLDINRPRAR*KLLSPW
Trigger: CCAAGGACTCAGAAGCTTCCAACGTGCTCGTGGGCG...ATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGAATGCAATGAATGGCTaGTCCAGGAAGTCCACCTCG +
Preference number: 4 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLNAMNG*SRKSTS
Trigger: CGAGGTGGACTTCCTGGACCAGCCATTCATTGCATT...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AAACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAAACAGAGCCATTCATCTaGCCCGGCTCTGCCAGAGAG +
Preference number: 4 (lower is better)
Translates to: KPAGLIQTFNTIKSLRHQTEPFI*PGSARE
Trigger: CTCTCTGGCAGAGCCGGGCCAGATGAATGGCTCTGT...TTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp TCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGGAGAGTAACTCCAACTaGAAGATCTTTTTCTGGCAA +
Preference number: 4 (lower is better)
Translates to: SSVRLSSDSISILTCGTMESNSN*KIFFWQ
Trigger: TTGCCAGAAAAAGATCTTCCAGTTGGAGTTACTCTC...CATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTTGGGAATCTTCTTCATaGATTTGTTTTTCCGCTGGT +
Preference number: 4 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSWESSS*ICFSAG
Trigger: ACCAGCGGAAAAACAAATTCATGAAGAAGATTCCCA...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR TCA 90 bp AACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATAGGGCAGCTTCCTCTTaGCATCCAGACACAGTCCTC +
Preference number: 4 (lower is better)
Translates to: NLQDSFRPSIPSSHLDINRAASS*HPDTVL
Trigger: GAGGACTGTGTCTGGATGTCAAGAGGAAGCTGCCCT...ATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp GAGTCCGTAACGATGCTACAGTTTAATCATCTGGAGAGAGTGCTACTACAGATCTACAGCCGAGGTAGATaGACAGAACAGCAGAGATGG +
Preference number: 4 (lower is better)
Translates to: ESVTMLQFNHLERVLLQIYSRGR*TEQQRW
Trigger: CCATCTCTGCTGTTCTGTTCATCTACCTCGGCTGTA...GATCTGTAGTAGCACTCTCTCCAGATGATTAAACTGTAGCATCGTTACGGACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGGGGGATCTTTACAACTaGGGGAGGAAGGAACTGGGG +
Preference number: 4 (lower is better)
Translates to: RMISLLKANWFSSSFGYWGDLYN*GRKELG
Trigger: CCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCC...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
CDS-3UTR TCA 90 bp AAACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAACCAGTTCTGAGCCACTaGTGGAGGAGTCAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: KPAGLIQTFNTIKSLRHQPVLSH*WRSQRE
Trigger: CTCTCTCTGACTCCTCCATCAGTGGCTCAGAACTGG...TTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCAAGCTCAAAGAGACTGTaGAGGGACAGCGTGGACACA +
Preference number: 4 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSSSKRL*RDSVDT
Trigger: TGTGTCCACGCTGTCCCTGCACAGTCTCTTTGAGCT...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCATCCTCCCCGATTTCGTaGATAGCTGGCATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSSSPIS*IAGISA
Trigger: AGCTGAGATGCCAGCTATGCACGAAATCGGGGAGGA...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGTGCAGCTTTGGGGTCTaGAGGCCAAAACAGGCATCG +
Preference number: 4 (lower is better)
Translates to: RMISLLKANWFSSSFGYWCSFGV*RPKQAS
Trigger: CGATGCCTGTTTTGGCCTGCAGACCCCAAAGCTGCA...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AGCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAAACTCCAGTAACTCTCTaGTCCCTGACCCCCAGGAAC +
Preference number: 4 (lower is better)
Translates to: SYCKIVQGERGPTQIHHQTPVTL*SLTPRN
Trigger: GTTCCTGGGGGTCAGGGAGCAGAGAGTTACTGGAGT...TTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AAACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAAGTTCCCAGAACTGGATaGCATTCAGGGAGGCCACAC +
Preference number: 4 (lower is better)
Translates to: KPAGLIQTFNTIKSLRHQVPRTG*HSGRPH
Trigger: GTGTGGCCTCCCTGAATGGCATCCAGTTCTGGGAAC...TTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCATGCCACCTCCTTCTCTaGCGTCTCATGGACCTCTTT +
Preference number: 4 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSCHLLL*RLMDLF
Trigger: AAAGAGGTCCATGAGACGGCAGAGAAGGAGGTGGCA...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCATCTGCAAGGGAACGGTaGATGGGCTTCTTGGTTTGG +
Preference number: 4 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSSARER*MGFLVW
Trigger: CCAAACCAAGAAGCCCATCCACCGTTCCCTTGCAGA...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCAGTGAAGAGCTGGCAGTCGGATGGAGAATACAATaGAGAAGTCAGCCACCAGGG +
Preference number: 4 (lower is better)
Translates to: KMNSFVLERVWISEELAVGWRIQ*RSQPPG
Trigger: CCCTGGTGGCTGACTTCTCCATTGTATTCTCCATCC...GACTGCCAGCTCTTCACTGATCCAAACCCTTTCCAACACAAAACTGTTCATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATAGGCACGTGCAGCTTTaGGGTCTGCAGGCCAAAACA +
Preference number: 4 (lower is better)
Translates to: NLQDSFRPSIPSSHLDINRHVQL*GLQAKT
Trigger: TGTTTTGGCCTGCAGACCCCAAAGCTGCACGTGCCT...ATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCACAGGCCAGGTCATGCTaGGAGAAAATCAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSQARSC*EKIKSR
Trigger: CCTGGACTTGATTTTCTCCCAGCATGACCTGGCCTG...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp TCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGCTTTTTGTCCTTCTCTaGGAGGATATTGTCAATCCA +
Preference number: 4 (lower is better)
Translates to: SVRLSSDSISILTCGTMKLFVLL*EDIVNP
Trigger: TGGATTGACAATATCCTCCCAGAGAAGGACAAAAAG...CTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CCA 90 bp CCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCTTCTCTGCCGTCTCATaGACCTCTTTCCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: PGLVQRKMNSFVLERVWIFSAVS*TSFLLF
Trigger: GAAGAGAAGGAAAGAGGTCCATGAGACGGCAGAGAA...GATCCAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp AGTACTCCTTTGATTACAAACATTAGCTGCCTAGCATGCAATGTTCTTGAGATTCACTGGATGGCTGAGTaGAGACCAATCCAGAGGCGG +
Preference number: 4 (lower is better)
Translates to: STPLITNISCLACNVLEIHWMAE*RPIQRR
Trigger: CCGCCTCTGGATTGGTCTTCACTCAGCCATCCAGTG...AATCTCAAGAACATTGCATGCTAGGCAGCTAATGTTTGTAATCAAAGGAGTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp AGCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAAGGTGCTTGGCTGGCATaGGGAAAAGCTTACAGCGTT +
Preference number: 4 (lower is better)
Translates to: SYCKIVQGERGPTQIHHQGAWLA*GKAYSV
Trigger: AACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACC...TTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATAAACCCAATATGAATTaGAGGGAAATCTTGTTCTGG +
Preference number: 4 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYKPNMN*REILFW
Trigger: CCAGAACAAGATTTCCCTTCAATTCATATTGGGTTT...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR GCA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGCATCTGGCCCGGCTCTaGCAGAGAGAACACAGATTT +
Preference number: 4 (lower is better)
Translates to: RMISLLKANWFSSSFGYWHLARL*QREHRF
Trigger: AAATCTGTGTTCTCTCTGGCAGAGCCGGGCCAGATG...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AGCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAACCGGTTGACAATGACTaGGGTGATCTGCTGGTCCAT +
Preference number: 4 (lower is better)
Translates to: SYCKIVQGERGPTQIHHQPVDND*GDLLVH
Trigger: ATGGACCAGCAGATCACCGCAGTCATTGTCAACCGG...TTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp GAGTCCGTAACGATGCTACAGTTTAATCATCTGGAGAGAGTGCTACTACAGATCCCGCTGGTCTGTGTTTaGGGTATGAGAGATGTCATT +
Preference number: 4 (lower is better)
Translates to: ESVTMLQFNHLERVLLQIPLVCV*GMRDVI
Trigger: AATGACATCTCTCATACCCCAAACACAGACCAGCGG...GATCTGTAGTAGCACTCTCTCCAGATGATTAAACTGTAGCATCGTTACGGACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATGATTTCGTGCATAGCTaGCATCTCAGCTTCGTCGCC +
Preference number: 4 (lower is better)
Translates to: NLQDSFRPSIPSSHLDINDFVHS*HLSFVA
Trigger: GGCGACGAAGCTGAGATGCCAGCTATGCACGAAATC...ATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp GCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAAGATCATAGAAGTCGCTTaGGAACCAGGGCAGCTTCCT +
Preference number: 4 (lower is better)
Translates to: AIAKLCREREDLLKYIIKIIEVA*EPGQLP
Trigger: AGGAAGCTGCCCTGGTTCCCAAGCGACTTCTATGAT...CTTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCAACAGAACAGCAGAGATaGACTGGAGGTGGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSTEQQR*TGGGSH
Trigger: ATGGCTTCCACCTCCAGTCCATCTCTGCTGTTCTGT...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGTACAGCCGAGGTAGATaGACAGAACAGCAGAGATGG +
Preference number: 4 (lower is better)
Translates to: RMISLLKANWFSSSFGYWYSRGR*TEQQRW
Trigger: CCATCTCTGCTGTTCTGTTCATCTACCTCGGCTGTA...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGATCCAGGCCAGGTCATaGTGGGAGAAAATCAAGTCC +
Preference number: 4 (lower is better)
Translates to: RMISLLKANWFSSSFGYWIQARS*WEKIKS
Trigger: GGACTTGATTTTCTCCCAGCATGACCTGGCCTGGAT...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AGTACTCCTTTGATTACAAACATTAGCTGCCTAGCATGCAATGTTCTTGAGATTTCACCCCTCCCAGCATaGCAGACTGGACAAGACGAA +
Preference number: 4 (lower is better)
Translates to: STPLITNISCLACNVLEISPLPA*QTGQDE
Trigger: TTCGTCTTGTCCAGTCTGCCATGCTGGGAGGGGTGA...AATCTCAAGAACATTGCATGCTAGGCAGCTAATGTTTGTAATCAAAGGAGTACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGACAGAACAGCAGAGATaGACTGGAGGTGGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: RMISLLKANWFSSSFGYWTEQQR*TGGGSH
Trigger: ATGGCTTCCACCTCCAGTCCATCTCTGCTGTTCTGT...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp AAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCAGTGAAGAGCTGGCAGTCAAGGTCCTAATAGTATaGACAGAAATCTGGTGGGGA +
Preference number: 4 (lower is better)
Translates to: KMNSFVLERVWISEELAVKVLIV*TEIWWG
Trigger: TCCCCACCAGATTTCTGTTCATACTATTAGGACCTT...GACTGCCAGCTCTTCACTGATCCAAACCCTTTCCAACACAAAACTGTTCATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp GAGTCCGTAACGATGCTACAGTTTAATCATCTGGAGAGAGTGCTACTACAGATCAAGGTCCTAATAGTATaGACAGAAATCTGGTGGGGA +
Preference number: 4 (lower is better)
Translates to: ESVTMLQFNHLERVLLQIKVLIV*TEIWWG
Trigger: TCCCCACCAGATTTCTGTTCATACTATTAGGACCTT...GATCTGTAGTAGCACTCTCTCCAGATGATTAAACTGTAGCATCGTTACGGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR TCA 90 bp AGTACTCCTTTGATTACAAACATTAGCTGCCTAGCATGCAATGTTCTTGAGATTAAGGCACTGGATGGCTaGGTGAAGACCAATCCAGAG +
Preference number: 4 (lower is better)
Translates to: STPLITNISCLACNVLEIKALDG*VKTNPE
Trigger: CTCTGGATTGGTCTTCACTCAGCCATCCAGTGCCTT...AATCTCAAGAACATTGCATGCTAGGCAGCTAATGTTTGTAATCAAAGGAGTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AGTACTCCTTTGATTACAAACATTAGCTGCCTAGCATGCAATGTTCTTGAGATTATCTCTATCCTCACCTaGGGCACCATGAAGACCGGA +
Preference number: 4 (lower is better)
Translates to: STPLITNISCLACNVLEIISILT*GTMKTG
Trigger: TCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGAT...AATCTCAAGAACATTGCATGCTAGGCAGCTAATGTTTGTAATCAAAGGAGTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AAACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAACCGCTGGTCTGTGTTTaGGGTATGAGAGATGTCATT +
Preference number: 4 (lower is better)
Translates to: KPAGLIQTFNTIKSLRHQPLVCV*GMRDVI
Trigger: AATGACATCTCTCATACCCCAAACACAGACCAGCGG...TTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AGTACTCCTTTGATTACAAACATTAGCTGCCTAGCATGCAATGTTCTTGAGATTCAGGCCAGGTCATGCTaGGAGAAAATCAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: STPLITNISCLACNVLEIQARSC*EKIKSR
Trigger: CCTGGACTTGATTTTCTCCCAGCATGACCTGGCCTG...AATCTCAAGAACATTGCATGCTAGGCAGCTAATGTTTGTAATCAAAGGAGTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGCTTTTTGTCCTTCTCTaGGAGGATATTGTCAATCCA +
Preference number: 4 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLLFVLL*EDIVNP
Trigger: TGGATTGACAATATCCTCCCAGAGAAGGACAAAAAG...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp GAGTCCGTAACGATGCTACAGTTTAATCATCTGGAGAGAGTGCTACTACAGATCAGTCCATCCTCTATCTaGTTCTCAATGACATCATCT +
Preference number: 4 (lower is better)
Translates to: ESVTMLQFNHLERVLLQISPSSI*FSMTSS
Trigger: AGATGATGTCATTGAGAAGCAGATAGAGGATGGACT...GATCTGTAGTAGCACTCTCTCCAGATGATTAAACTGTAGCATCGTTACGGACTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AAACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAAGACAAGACGAACAAATaGAATGAATGGCTGGTCCAG +
Preference number: 4 (lower is better)
Translates to: KPAGLIQTFNTIKSLRHQDKTNK*NEWLVQ
Trigger: CTGGACCAGCCATTCATTGCATTTGTTCGTCTTGTC...TTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AGTACTCCTTTGATTACAAACATTAGCTGCCTAGCATGCAATGTTCTTGAGATTTCCTTCCACTCCATCTaGTCCCCATCATGCTGTAGA +
Preference number: 4 (lower is better)
Translates to: STPLITNISCLACNVLEISFHSI*SPSCCR
Trigger: TCTACAGCATGATGGGGACCAGATGGAGTGGAAGGA...AATCTCAAGAACATTGCATGCTAGGCAGCTAATGTTTGTAATCAAAGGAGTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATAGTCCATCCTCTATCTaGTTCTCAATGACATCATCT +
Preference number: 4 (lower is better)
Translates to: NLQDSFRPSIPSSHLDINSPSSI*FSMTSS
Trigger: AGATGATGTCATTGAGAAGCAGATAGAGGATGGACT...ATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTT
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AGTACTCCTTTGATTACAAACATTAGCTGCCTAGCATGCAATGTTCTTGAGATTGAGAGATGTCATTCATaGTTCTACTCTGGGCATGAC +
Preference number: 4 (lower is better)
Translates to: STPLITNISCLACNVLEIERCHS*FYSGHD
Trigger: GTCATGCCCAGAGTAGAAGCATGAATGACATCTCTC...AATCTCAAGAACATTGCATGCTAGGCAGCTAATGTTTGTAATCAAAGGAGTACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AGTACTCCTTTGATTACAAACATTAGCTGCCTAGCATGCAATGTTCTTGAGATTCAAATTTTATCCACCTaGCTGACTCCTTCCACTCCA +
Preference number: 4 (lower is better)
Translates to: STPLITNISCLACNVLEIQILST*LTPSTP
Trigger: TGGAGTGGAAGGAGTCAGCCAGGTGGATAAAATTTG...AATCTCAAGAACATTGCATGCTAGGCAGCTAATGTTTGTAATCAAAGGAGTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
3UTR CAA 72 bp TTGAGATTGGAAATTTGGGCTTTAGCTATTGCAAAATaGTGCAGGGAGAGAGAGGACCTACTCAAATACATC +
Preference number: 4 (lower is better)
Translates to: LRLEIWALAIAK*CREREDLLKYI
Trigger: GATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGCTAAAGCCCAAATTTCCAATCTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR GCA 90 bp AGTACTCCTTTGATTACAAACATTAGCTGCCTAGCATGCAATGTTCTTGAGATTAAATTCATCAATCCCTaGGATCAGATCTTCTCGGTT +
Preference number: 4 (lower is better)
Translates to: STPLITNISCLACNVLEIKFINP*DQIFSV
Trigger: AACCGAGAAGATCTGATCGCAGGGATTGATGAATTT...AATCTCAAGAACATTGCATGCTAGGCAGCTAATGTTTGTAATCAAAGGAGTACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CCA 90 bp AGTACTCCTTTGATTACAAACATTAGCTGCCTAGCATGCAATGTTCTTGAGATTGAGAGTAACTCCAACTaGAAGATCTTTTTCCATTGC +
Preference number: 4 (lower is better)
Translates to: STPLITNISCLACNVLEIESNSN*KIFFHC
Trigger: GCAATGGAAAAAGATCTTCCAGTTGGAGTTACTCTC...AATCTCAAGAACATTGCATGCTAGGCAGCTAATGTTTGTAATCAAAGGAGTACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113899.8
CDS CCA 90 bp GAACCTTCCGGTCCAGATCAGCTCCTCCCCGATTTCGTGCATAGCTaGCATCTCAGCTTCGTCGCCACTGCCCACTCCGCCAGCCCCGCT +
Preference number: 5 (lower is better)
Translates to: EPSGPDQLLPDFVHS*HLSFVATAHSASPA
Trigger: AGCGGGGCTGGCGGAGTGGGCAGTGGCGACGAAGCTGAGATGCCAGCTATGCACGAAATCGGGGAGGAGCTGATCTGGACCGGAAGGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS GCA 90 bp ATGCGGCGAAGGGGCACGTGGCGCAGGAAAGCGTGGTCCGGCTGGTaGTTGGCTGGCATGAGGAAAAGCTTACAGCGTTCCCAGAACTGG +
Preference number: 5 (lower is better)
Translates to: MRRRGTWRRKAWSGW*LAGMRKSLQRSQNW
Trigger: CCAGTTCTGGGAACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTTCCTGCGCCACGTGCCCCTTCGCCGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 90 bp GAGTTGGGCCTGCTGAGGAGCTCCGGGCAGAGCTTCGGTTCGTCGTaGAAACCGACTTCCCGATGTCTGCAAGGGAACGGTGGATGGGCT +
Preference number: 5 (lower is better)
Translates to: ELGLLRSSGQSFGSS*KPTSRCLQGNGGWA
Trigger: AGCCCATCCACCGTTCCCTTGCAGACATCGGGAAGTCGGTTTCCACGACGAACCGAAGCTCTGCCCGGAGCTCCTCAGCAGGCCCAACTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 90 bp CCTCCTCCAGCCGAGGCTCCGCCTCCGCCCACAGAGCCATTCATCTaGCCCGGCTCTGCCAGAGAGAACACAGATTTCCTCTTGTCAGCT +
Preference number: 5 (lower is better)
Translates to: PPPAEAPPPPTEPFI*PGSARENTDFLLSA
Trigger: AGCTGACAAGAGGAAATCTGTGTTCTCTCTGGCAGAGCCGGGCCAGATGAATGGCTCTGTGGGCGGAGGCGGAGCCTCGGCTGGAGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS TCA 90 bp TCGAATCCTCAGGTCCTCAGTGGAGCGGTGCAGAGTTGGGCCTGCTaGGGAGCTCCGGGCAGAGCTTCGGTTCGTCGTGGAAACCGACTT +
Preference number: 5 (lower is better)
Translates to: SNPQVLSGAVQSWAC*GAPGRASVRRGNRL
Trigger: AAGTCGGTTTCCACGACGAACCGAAGCTCTGCCCGGAGCTCCTCAGCAGGCCCAACTCTGCACCGCTCCACTGAGGACCTGAGGATTCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 90 bp GGAGTAAGTCCCAAAGAAAAGGATGAAGGACATGAGCGCCAGGTCTaGGACGAACTGGCAGGAGCTCCCGAGCAGGCGCCCGCCGTAGCT +
Preference number: 5 (lower is better)
Translates to: GVSPKEKDEGHERQV*DELAGAPEQAPAVA
Trigger: AGCTACGGCGGGCGCCTGCTCGGGAGCTCCTGCCAGTTCGTCCCAGACCTGGCGCTCATGTCCTTCATCCTTTTCTTTGGGACTTACTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS TCA 90 bp GCACGTGGCGCAGGAAAGCGTGGTCCGGCTGGTGCTTGGCTGGCATaGGGAAAAGCTTACAGCGTTCCCAGAACTGGATGCCATTCAGGG +
Preference number: 5 (lower is better)
Translates to: ARGAGKRGPAGAWLA*GKAYSVPRTGCHSG
Trigger: CCCTGAATGGCATCCAGTTCTGGGAACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTTCCTGCGCCACGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS GCA 90 bp AGCAGCTGTCCAGATCCAGTAGCACTGTCCCTGTCTGCAGGCAGGTaGGGAGCTCAAAGAGACTGTGCAGGGACAGCGTGGACACATGGG +
Preference number: 5 (lower is better)
Translates to: SSCPDPVALSLSAGR*GAQRDCAGTAWTHG
Trigger: CCCATGTGTCCACGCTGTCCCTGCACAGTCTCTTTGAGCTCCGCACCTGCCTGCAGACAGGGACAGTGCTACTGGATCTGGACAGCTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS GCA 90 bp TGTGGTAGGGAGCAGCTGTCCAGATCCAGTAGCACTGTCCCTGTCTaGAGGCAGGTGCGGAGCTCAAAGAGACTGTGCAGGGACAGCGTG +
Preference number: 5 (lower is better)
Translates to: CGREQLSRSSSTVPV*RQVRSSKRLCRDSV
Trigger: CACGCTGTCCCTGCACAGTCTCTTTGAGCTCCGCACCTGCCTGCAGACAGGGACAGTGCTACTGGATCTGGACAGCTGCTCCCTACCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS GCA 90 bp GAGGCTGCCCCGAGAAGAGGCAGAACAAGCTGCCAGCCATGGCAGTaGCCAGGAAGCTCTCCATTACTCCCTGGTAGTTGTCTGTGGCAT +
Preference number: 5 (lower is better)
Translates to: EAAPRRGRTSCQPWQ*PGSSPLLPGSCLWH
Trigger: ATGCCACAGACAACTACCAGGGAGTAATGGAGAGCTTCCTGGGCACTGCCATGGCTGGCAGCTTGTTCTGCCTCTTCTCGGGGCAGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 90 bp AAGGGGCACGTGGCGCAGGAAAGCGTGGTCCGGCTGGTGCTTGGCTaGCATGAGGAAAAGCTTACAGCGTTCCCAGAACTGGATGCCATT +
Preference number: 5 (lower is better)
Translates to: KGHVAQESVVRLVLG*HEEKLTAFPELDAI
Trigger: AATGGCATCCAGTTCTGGGAACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTTCCTGCGCCACGTGCCCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp CAGCGCTGGACTAGAGGGTGGTCTCCCCGCCCACCTCTCTCCCATAGTCCTCCTTTCTCTGGGAGGATATaGTCAATCCAGGCCAGGTCA +
Preference number: 5 (lower is better)
Translates to: QRWTRGWSPRPPLSHSPPFSGRI*SIQARS
Trigger: TGACCTGGCCTGGATTGACAATATCCTCCCAGAGAA...AGGAGGACTATGGGAGAGAGGTGGGCGGGGAGACCACCCTCTAGTCCAGCGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
CDS GCA 90 bp CTCTGTCACCCCTCCCAGCATGGCAGACTGGACAAGACGAACAAATaGAATGAATGGCTGGTCCAGGAAGTCCACCTCGCCCACGAGCAC +
Preference number: 5 (lower is better)
Translates to: LCHPSQHGRLDKTNK*NEWLVQEVHLAHEH
Trigger: GTGCTCGTGGGCGAGGTGGACTTCCTGGACCAGCCATTCATTGCATTTGTTCGTCTTGTCCAGTCTGCCATGCTGGGAGGGGTGACAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS GCA 90 bp AACCAGCCTCGGTCGGGCCTTGTGGGCTTAATGACACTAGGCACGTaGAGCTTTGGGGTCTGCAGGCCAAAACAGGCATCGATTCCACAG +
Preference number: 5 (lower is better)
Translates to: NQPRSGLVGLMTLGT*SFGVCRPKQASIPQ
Trigger: CTGTGGAATCGATGCCTGTTTTGGCCTGCAGACCCCAAAGCTGCACGTGCCTAGTGTCATTAAGCCCACAAGGCCCGACCGAGGCTGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp CCCATAGTCCTCCTCGTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATTGGAGCGGTGCAGAGTaGGGCCTGCTGAGGAGCTCC +
Preference number: 5 (lower is better)
Translates to: PIVLLVVVCEVELRFHLYWSGAE*GLLRSS
Trigger: GGAGCTCCTCAGCAGGCCCAACTCTGCACCGCTCCA...ATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTTGGAGCGGTGCAGAGTaGGGCCTGCTGAGGAGCTCC +
Preference number: 5 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSWSGAE*GLLRSS
Trigger: GGAGCTCCTCAGCAGGCCCAACTCTGCACCGCTCCA...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GCGCTGTGTCTATGTCGGAGGTCCCTGAAAGGCCTCCAGTTGTCTCTCTGGTCGCATCATAGAAGTCGCTaGGGAACCAGGGCAGCTTCC +
Preference number: 5 (lower is better)
Translates to: ALCLCRRSLKGLQLSLWSHHRSR*GTRAAS
Trigger: GGAAGCTGCCCTGGTTCCCAAGCGACTTCTATGATG...CGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACATAGACACAGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCTGGTCCGGCTGGTGCTaGGCTGGCATGAGGAAAAGC +
Preference number: 5 (lower is better)
Translates to: SSSVRLSSDSISILTCGTWSGWC*AGMRKS
Trigger: GCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCA...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACGAAGGAACTGGGGCATaGCCACCTCCTTCTCTGCCG +
Preference number: 5 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHEGTGA*PPPSLP
Trigger: CGGCAGAGAAGGAGGTGGCAATGCCCCAGTTCCTTC...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS TCA 90 bp TGGGCTTCTTGGTTTGGTGACGATGCTTCCTCAGGAGCACGTAGCTaGCCCTCTCCCGGAGCTCAGGTCGCAGAAGTCCATCCTCTATCT +
Preference number: 5 (lower is better)
Translates to: WASWFGDDASSGARS*PSPGAQVAEVHPLS
Trigger: AGATAGAGGATGGACTTCTGCGACCTGAGCTCCGGGAGAGGGTCAGCTACGTGCTCCTGAGGAAGCATCGTCACCAAACCAAGAAGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGGTGGACACATGGGGCTaGCTCCATCGTTCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRVDTWG*LHRSPP
Trigger: AGGAGGAGAACGATGGAGCAAGCCCCATGTGTCCAC...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGCAGGGCAGCTTCCTCTaGACATCCAGACACAGTCCT +
Preference number: 5 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPQGSFL*TSRHSP
Trigger: AGGACTGTGTCTGGATGTCAAGAGGAAGCTGCCCTG...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAGACGTGTTGGTGTTaGGTGCCAGTGGGGCTGAGG +
Preference number: 5 (lower is better)
Translates to: VVCEVELRFHLYPHLRHHETCWC*VPVGLR
Trigger: CCTCAGCCCCACTGGCACCAAACACCAACACGTCTC...ATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp TCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGGAGACGTGTTGGTGTTaGGTGCCAGTGGGGCTGAGG +
Preference number: 5 (lower is better)
Translates to: SSVRLSSDSISILTCGTMETCWC*VPVGLR
Trigger: CCTCAGCCCCACTGGCACCAAACACCAACACGTCTC...CATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGGCGGCCTTCCTCAGCTaGTTCTCCTTCCGGTTGACA +
Preference number: 5 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRAAFLS*FSFRLT
Trigger: TGTCAACCGGAAGGAGAACAAGCTGAGGAAGGCCGC...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACGCGGCCTTCCTCAGCTaGTTCTCCTTCCGGTTGACA +
Preference number: 5 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHAAFLS*FSFRLT
Trigger: TGTCAACCGGAAGGAGAACAAGCTGAGGAAGGCCGC...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp CTGAGGCTAGCTGGCTTTCCAGGAAAGCTGAGGGTACACAGTGAGAACCCATCTTGGTCCGGCTGGTGCTaGGCTGGCATGAGGAAAAGC +
Preference number: 5 (lower is better)
Translates to: LRLAGFPGKLRVHSENPSWSGWC*AGMRKS
Trigger: GCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCA...AGATGGGTTCTCACTGTGTACCCTCAGCTTTCCTGGAAAGCCAGCTAGCCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTGAAGGAACTGGGGCATaGCCACCTCCTTCTCTGCCG +
Preference number: 5 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTEGTGA*PPPSLP
Trigger: CGGCAGAGAAGGAGGTGGCAATGCCCCAGTTCCTTC...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGGATGGGCTTCTTGGTTaGGTGACGATGCTTCCTCAG +
Preference number: 5 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPDGLLG*VTMLPQ
Trigger: CTGAGGAAGCATCGTCACCAAACCAAGAAGCCCATC...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTTCGCCCACGAGCACGTaGGAAGCTTCTGAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: VELRFHLYPHLRHHEDRTSPTST*EASESL
Trigger: CAAGGACTCAGAAGCTTCCAACGTGCTCGTGGGCGA...AGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp CTGAGGCTAGCTGGCTTTCCAGGAAAGCTGAGGGTACACAGTGAGAACCCATCTGCGGCCTTCCTCAGCTaGTTCTCCTTCCGGTTGACA +
Preference number: 5 (lower is better)
Translates to: LRLAGFPGKLRVHSENPSAAFLS*FSFRLT
Trigger: TGTCAACCGGAAGGAGAACAAGCTGAGGAAGGCCGC...AGATGGGTTCTCACTGTGTACCCTCAGCTTTCCTGGAAAGCCAGCTAGCCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp GCGCTGTGTCTATGTCGGAGGTCCCTGAAAGGCCTCCAGTTGTCTCTCTGGTCGGAAGATCTTTTTCCATaGCCACCTCCTTCTCTGCCG +
Preference number: 5 (lower is better)
Translates to: ALCLCRRSLKGLQLSLWSEDLFP*PPPSLP
Trigger: CGGCAGAGAAGGAGGTGGCAATGGAAAAAGATCTTC...CGACCAGAGAGACAACTGGAGGCCTTTCAGGGACCTCCGACATAGACACAGCGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113899.8
CDS CCA 90 bp AACAGCAGAGATGGACTGGAGGTGGAAGCCATCATAGAAGTCGCTTaGGAACCAGGGCAGCTTCCTCTTGACATCCAGACACAGTCCTCC +
Preference number: 5 (lower is better)
Translates to: NSRDGLEVEAIIEVA*EPGQLPLDIQTQSS
Trigger: GGAGGACTGTGTCTGGATGTCAAGAGGAAGCTGCCCTGGTTCCCAAGCGACTTCTATGATGGCTTCCACCTCCAGTCCATCTCTGCTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 90 bp GGGATACCTTCCATGGGGATCTTTACAACTGAGGGAGGAAGGAACTaGGGCATTGCCACCTCCTTCTCTGCCGTCTCATGGACCTCTTTC +
Preference number: 5 (lower is better)
Translates to: GIPSMGIFTTEGGRN*GIATSFSAVSWTSF
Trigger: GAAAGAGGTCCATGAGACGGCAGAGAAGGAGGTGGCAATGCCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCCATGGAAGGTATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTGTGGACACATGGGGCTaGCTCCATCGTTCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSVDTWG*LHRSPP
Trigger: AGGAGGAGAACGATGGAGCAAGCCCCATGTGTCCAC...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGGCTGAGGGAACTTTCTaGGGTGGCTCAATTCTGATG +
Preference number: 5 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPAEGTF*GGSILM
Trigger: CATCAGAATTGAGCCACCCAAGAAAGTTCCCTCAGC...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATTCCAGGCCATTGGCCTaGCTGAAGTCAAAGAGGAGC +
Preference number: 5 (lower is better)
Translates to: VVCEVELRFHLYPHLRHHSRPLA*LKSKRS
Trigger: GCTCCTCTTTGACTTCAGCAAGGCCAATGGCCTGGA...ATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGTTGTTCTCCTTCCGGTaGACAATGACTGCGGTGATC +
Preference number: 5 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPLFSFR*TMTAVI
Trigger: GATCACCGCAGTCATTGTCAACCGGAAGGAGAACAA...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGACTCCGACAGTGGATACCGTTTaGGGGATCAGATGGGATACC +
Preference number: 5 (lower is better)
Translates to: ELRFHLYPHLRHHEDRTPTVDTV*GIRWDT
Trigger: GGTATCCCATCTGATCCCCAAAACGGTATCCACTGT...CGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS TCA 90 bp GGAAGCCATCATAGAAGTCGCTTGGGAACCAGGGCAGCTTCCTCTTaGCATCCAGACACAGTCCTCCAAAGAACCTTCCGGTCCAGATCA +
Preference number: 5 (lower is better)
Translates to: GSHHRSRLGTRAASS*HPDTVLQRTFRSRS
Trigger: TGATCTGGACCGGAAGGTTCTTTGGAGGACTGTGTCTGGATGTCAAGAGGAAGCTGCCCTGGTTCCCAAGCGACTTCTATGATGGCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS GCA 90 bp CTGACCCTCTCCCGGAGCTCAGGTCGCAGAAGTCCATCCTCTATCTaGTTCTCAATGACATCATCTATGATCTGTGGTAGGGAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: LTLSRSSGRRSPSSI*FSMTSSMICGREQL
Trigger: CAGCTGCTCCCTACCACAGATCATAGATGATGTCATTGAGAAGCAGATAGAGGATGGACTTCTGCGACCTGAGCTCCGGGAGAGGGTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTCATCATAGAAGTCGCTaGGGAACCAGGGCAGCTTCC +
Preference number: 5 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSHHRSR*GTRAAS
Trigger: GGAAGCTGCCCTGGTTCCCAAGCGACTTCTATGATG...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACTTGTTCTCCTTCCGGTaGACAATGACTGCGGTGATC +
Preference number: 5 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHLFSFR*TMTAVI
Trigger: GATCACCGCAGTCATTGTCAACCGGAAGGAGAACAA...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS GCA 90 bp CATTCATGCTTCTACTCTGGGCATGACACAGATGACCATAGCTGGTaGTTTGTCGAATCCTCAGGTCCTCAGTGGAGCGGTGCAGAGTTG +
Preference number: 5 (lower is better)
Translates to: HSCFYSGHDTDDHSW*FVESSGPQWSGAEL
Trigger: CAACTCTGCACCGCTCCACTGAGGACCTGAGGATTCGACAAAGCACCAGCTATGGTCATCTGTGTCATGCCCAGAGTAGAAGCATGAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 90 bp TGTCATTCATGCTTCTACTCTGGGCATGACACAGATGACCATAGCTaGTGCTTTGTCGAATCCTCAGGTCCTCAGTGGAGCGGTGCAGAG +
Preference number: 5 (lower is better)
Translates to: CHSCFYSGHDTDDHS*CFVESSGPQWSGAE
Trigger: CTCTGCACCGCTCCACTGAGGACCTGAGGATTCGACAAAGCACCAGCTATGGTCATCTGTGTCATGCCCAGAGTAGAAGCATGAATGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCATGGAGCGGTGCAGAGTaGGGCCTGCTGAGGAGCTCC +
Preference number: 5 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSWSGAE*GLLRSS
Trigger: GGAGCTCCTCAGCAGGCCCAACTCTGCACCGCTCCA...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGTGGTCCGGCTGGTGCTaGGCTGGCATGAGGAAAAGC +
Preference number: 5 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLWSGWC*AGMRKS
Trigger: GCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCA...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGTGGACACATGGGGCTaGCTCCATCGTTCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLVDTWG*LHRSPP
Trigger: AGGAGGAGAACGATGGAGCAAGCCCCATGTGTCCAC...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp GCAGGTGAAGCCGGGCAAGAGATTTTGAAATGCAGGGTGATGCTTCGATCCAGTTCCGCTGGTCTGTGTTaGGGGTATGAGAGATGTCAT +
Preference number: 5 (lower is better)
Translates to: AGEAGQEILKCRVMLRSSSAGLC*GYERCH
Trigger: ATGACATCTCTCATACCCCAAACACAGACCAGCGGA...ACTGGATCGAAGCATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp TCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGGCTGAGGGAACTTTCTaGGGTGGCTCAATTCTGATG +
Preference number: 5 (lower is better)
Translates to: SVRLSSDSISILTCGTMKAEGTF*GGSILM
Trigger: CATCAGAATTGAGCCACCCAAGAAAGTTCCCTCAGC...CTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GTCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACAACACAGATTTCCTCTaGTCAGCTGAGGGAACTTTC +
Preference number: 5 (lower is better)
Translates to: VVVCEVELRFHLYPHLRHNTDFL*SAEGTF
Trigger: GAAAGTTCCCTCAGCTGACAAGAGGAAATCTGTGTT...GTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGACCGGAACACAGATTTCCTCTaGTCAGCTGAGGGAACTTTC +
Preference number: 5 (lower is better)
Translates to: EVELRFHLYPHLRHHEDRNTDFL*SAEGTF
Trigger: GAAAGTTCCCTCAGCTGACAAGAGGAAATCTGTGTT...CCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp TCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGAAGTTCTCTGGGAGGATATaGTCAATCCAGGCCAGGTCA +
Preference number: 5 (lower is better)
Translates to: SVRLSSDSISILTCGTMKFSGRI*SIQARS
Trigger: TGACCTGGCCTGGATTGACAATATCCTCCCAGAGAA...CTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS CCA 90 bp TTGTCCTTCTCTGGGAGGATATTGTCAATCCAGGCCAGGTCATGCTaGGAGAAAATCAAGTCCAGGAGCCTTCGAACAATGATAAGGCCC +
Preference number: 5 (lower is better)
Translates to: LSFSGRILSIQARSC*EKIKSRSLRTMIRP
Trigger: GGGCCTTATCATTGTTCGAAGGCTCCTGGACTTGATTTTCTCCCAGCATGACCTGGCCTGGATTGACAATATCCTCCCAGAGAAGGACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp GAGTCCGTAACGATGCTACAGTTTAATCATCTGGAGAGAGTGCTACTACAGATCTCGCCCACGAGCACGTaGGAAGCTTCTGAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: ESVTMLQFNHLERVLLQISPTST*EASESL
Trigger: CAAGGACTCAGAAGCTTCCAACGTGCTCGTGGGCGA...GATCTGTAGTAGCACTCTCTCCAGATGATTAAACTGTAGCATCGTTACGGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp AAAGGCCTCCAGTTGTCTCTCTGGTCGGTGGGTAAGGAAGCAGGTGTAAGGCTTAACACAGATTTCCTCTaGTCAGCTGAGGGAACTTTC +
Preference number: 5 (lower is better)
Translates to: KGLQLSLWSVGKEAGVRLNTDFL*SAEGTF
Trigger: GAAAGTTCCCTCAGCTGACAAGAGGAAATCTGTGTT...AAGCCTTACACCTGCTTCCTTACCCACCGACCAGAGAGACAACTGGAGGCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp CCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCCAGGGCAGCTTCCTCTaGACATCCAGACACAGTCCT +
Preference number: 5 (lower is better)
Translates to: PGLVQRKMNSFVLERVWIQGSFL*TSRHSP
Trigger: AGGACTGTGTCTGGATGTCAAGAGGAAGCTGCCCTG...GATCCAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp CCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCTCCAGGCCATTGGCCTaGCTGAAGTCAAAGAGGAGC +
Preference number: 5 (lower is better)
Translates to: PGLVQRKMNSFVLERVWISRPLA*LKSKRS
Trigger: GCTCCTCTTTGACTTCAGCAAGGCCAATGGCCTGGA...GATCCAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp TCGTCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATCTTCTTCATGAATTaGTTTTTCCGCTGGTCTGTG +
Preference number: 5 (lower is better)
Translates to: SSSVRLSSDSISILTCGTIFFMN*FFRWSV
Trigger: CACAGACCAGCGGAAAAACAAATTCATGAAGAAGAT...GGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp AACCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATGAGACGTGTTGGTGTTaGGTGCCAGTGGGGCTGAGG +
Preference number: 5 (lower is better)
Translates to: NLQDSFRPSIPSSHLDINETCWC*VPVGLR
Trigger: CCTCAGCCCCACTGGCACCAAACACCAACACGTCTC...ATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp TCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGCTGAAAGATGTCCCTTaGAGTCGCTTTTTCTTTGAG +
Preference number: 5 (lower is better)
Translates to: SSVRLSSDSISILTCGTMLKDVP*SRFFFE
Trigger: CTCAAAGAAAAAGCGACTCAAAGGGACATCTTTCAG...CATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp AGCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAATCGCCCACGAGCACGTaGGAAGCTTCTGAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: SYCKIVQGERGPTQIHHQSPTST*EASESL
Trigger: CAAGGACTCAGAAGCTTCCAACGTGCTCGTGGGCGA...TTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCACATCATAGAAGTCGCTaGGGAACCAGGGCAGCTTCC +
Preference number: 5 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSHHRSR*GTRAAS
Trigger: GGAAGCTGCCCTGGTTCCCAAGCGACTTCTATGATG...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp TCTCCCAGGATTGGTGCAGAGGAAGATGAACAGTTTTGTGTTGGAAAGGGTTTGTTCTCTGGGAGGATATaGTCAATCCAGGCCAGGTCA +
Preference number: 5 (lower is better)
Translates to: SPRIGAEEDEQFCVGKGLFSGRI*SIQARS
Trigger: TGACCTGGCCTGGATTGACAATATCCTCCCAGAGAA...CAAACCCTTTCCAACACAAAACTGTTCATCTTCCTCTGCACCAATCCTGGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp TGGCGGCACATGCCTTTAATCTCAGAGACAGGTGGGTCTCTGAATTCTGAGGCTATCTTCTTCATGAATTaGTTTTTCCGCTGGTCTGTG +
Preference number: 5 (lower is better)
Translates to: WRHMPLISETGGSLNSEAIFFMN*FFRWSV
Trigger: CACAGACCAGCGGAAAAACAAATTCATGAAGAAGAT...AGCCTCAGAATTCAGAGACCCACCTGTCTCTGAGATTAAAGGCATGTGCCGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGCAGGGCAGCTTCCTCTaGACATCCAGACACAGTCCT +
Preference number: 5 (lower is better)
Translates to: RMISLLKANWFSSSFGYWQGSFL*TSRHSP
Trigger: AGGACTGTGTCTGGATGTCAAGAGGAAGCTGCCCTG...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGTCCAGGCCATTGGCCTaGCTGAAGTCAAAGAGGAGC +
Preference number: 5 (lower is better)
Translates to: RMISLLKANWFSSSFGYWSRPLA*LKSKRS
Trigger: GCTCCTCTTTGACTTCAGCAAGGCCAATGGCCTGGA...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp TCGTCTGTGAGGTTGAGCTCAGATTCCATCTCTATCCTCACCTGCGGCACCATGGAAACCCAATATGAATaGAAGGGAAATCTTGTTCTG +
Preference number: 5 (lower is better)
Translates to: SSVRLSSDSISILTCGTMETQYE*KGNLVL
Trigger: CAGAACAAGATTTCCCTTCAATTCATATTGGGTTTC...CATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS CCA 90 bp ACTGGAAGATCTTTTTCCATTGCCACCTCCTTCTCTGCCGTCTCATaGACCTCTTTCCTTCTCTTCTTCTTCTTGTCTGTCTCCTTTTTG +
Preference number: 5 (lower is better)
Translates to: TGRSFSIATSFSAVS*TSFLLFFFLSVSFL
Trigger: CAAAAAGGAGACAGACAAGAAGAAGAAGAGAAGGAAAGAGGTCCATGAGACGGCAGAGAAGGAGGTGGCAATGGAAAAAGATCTTCCAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGGATGGGCTTCTTGGTTaGGTGACGATGCTTCCTCAG +
Preference number: 5 (lower is better)
Translates to: RMISLLKANWFSSSFGYWDGLLG*VTMLPQ
Trigger: CTGAGGAAGCATCGTCACCAAACCAAGAAGCCCATC...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp CCTGCAGGACTCATTCAGACCTTCAATACCATCAAGTCACTTAGACATCAATCAGCTGAGGGAACTTTCTaGGGTGGCTCAATTCTGATG +
Preference number: 5 (lower is better)
Translates to: PAGLIQTFNTIKSLRHQSAEGTF*GGSILM
Trigger: CATCAGAATTGAGCCACCCAAGAAAGTTCCCTCAGC...TGATTGATGTCTAAGTGACTTGATGGTATTGAAGGTCTGAATGAGTCCTGCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp GCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAAGTTGTTCTCCTTCCGGTaGACAATGACTGCGGTGATC +
Preference number: 5 (lower is better)
Translates to: AIAKLCREREDLLKYIIKLFSFR*TMTAVI
Trigger: GATCACCGCAGTCATTGTCAACCGGAAGGAGAACAA...CTTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS CCA 90 bp TTTCCTTCTCTTCTTCTTCTTGTCTGTCTCCTTTTTGTCCTTCTCTaGGAGGATATTGTCAATCCAGGCCAGGTCATGCTGGGAGAAAAT +
Preference number: 5 (lower is better)
Translates to: FPSLLLLVCLLFVLL*EDIVNPGQVMLGEN
Trigger: ATTTTCTCCCAGCATGACCTGGCCTGGATTGACAATATCCTCCCAGAGAAGGACAAAAAGGAGACAGACAAGAAGAAGAAGAGAAGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS-3UTR CAA 90 bp AGAATGATCAGCCTTTTAAAAGCTAACTGGTTCTCCAGCTCATTTGGTTACTGGTCCGCTGGTCTGTGTTaGGGGTATGAGAGATGTCAT +
Preference number: 5 (lower is better)
Translates to: RMISLLKANWFSSSFGYWSAGLC*GYERCH
Trigger: ATGACATCTCTCATACCCCAAACACAGACCAGCGGA...CCAGTAACCAAATGAGCTGGAGAACCAGTTAGCTTTTAAAAGGCTGATCATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS-3UTR CAA 90 bp AGCTATTGCAAAATTGTGCAGGGAGAGAGAGGACCTACTCAAATACATCATCAAACAGTGGATACCGTTTaGGGGATCAGATGGGATACC +
Preference number: 5 (lower is better)
Translates to: SYCKIVQGERGPTQIHHQTVDTV*GIRWDT
Trigger: GGTATCCCATCTGATCCCCAAAACGGTATCCACTGT...TTGATGATGTATTTGAGTAGGTCCTCTCTCTCCCTGCACAATTTTGCAATAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039212.8
CDS-3UTR CAA 90 bp AAGATGAACAGTTTTGTGTTGGAAAGGGTTTGGATCAGTGAAGAGCTGGCAGTCATCTTCTTCATGAATTaGTTTTTCCGCTGGTCTGTG +
Preference number: 5 (lower is better)
Translates to: KMNSFVLERVWISEELAVIFFMN*FFRWSV
Trigger: CACAGACCAGCGGAAAAACAAATTCATGAAGAAGAT...GACTGCCAGCTCTTCACTGATCCAAACCCTTTCCAACACAAAACTGTTCATCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
CDS CAA 90 bp CGGCGAAGGGGCACGTGGCGCAGGAAAGCGTGGTCCGGCTGGTGCTaGGCTGGCATGAGGAAAAGCTTACAGCGTTCCCAGAACTGGATG +
Preference number: 6 (lower is better)
Translates to: RRRGTWRRKAWSGWC*AGMRKSLQRSQNWM
Trigger: CATCCAGTTCTGGGAACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTTCCTGCGCCACGTGCCCCTTCGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 72 bp GGTCCAGATCAGCTCCTCCCCGATTTCGTGCATAGCTaGCATCTCAGCTTCGTCGCCACTGCCCACTCCGCC +
Preference number: 6 (lower is better)
Translates to: GPDQLLPDFVHS*HLSFVATAHSA
Trigger: GGCGGAGTGGGCAGTGGCGACGAAGCTGAGATGCCAGCTATGCACGAAATCGGGGAGGAGCTGATCTGGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 72 bp CCCAAAGAAAAGGATGAAGGACATGAGCGCCAGGTCTaGGACGAACTGGCAGGAGCTCCCGAGCAGGCGCCC +
Preference number: 6 (lower is better)
Translates to: PKEKDEGHERQV*DELAGAPEQAP
Trigger: GGGCGCCTGCTCGGGAGCTCCTGCCAGTTCGTCCCAGACCTGGCGCTCATGTCCTTCATCCTTTTCTTTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CAA 72 bp GGCACGTGGCGCAGGAAAGCGTGGTCCGGCTGGTGCTaGGCTGGCATGAGGAAAAGCTTACAGCGTTCCCAG +
Preference number: 6 (lower is better)
Translates to: GTWRRKAWSGWC*AGMRKSLQRSQ
Trigger: CTGGGAACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTTCCTGCGCCACGTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS GCA 72 bp CCAGATCCAGTAGCACTGTCCCTGTCTGCAGGCAGGTaGGGAGCTCAAAGAGACTGTGCAGGGACAGCGTGG +
Preference number: 6 (lower is better)
Translates to: PDPVALSLSAGR*GAQRDCAGTAW
Trigger: CCACGCTGTCCCTGCACAGTCTCTTTGAGCTCCGCACCTGCCTGCAGACAGGGACAGTGCTACTGGATCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 72 bp CTGCTGAGGAGCTCCGGGCAGAGCTTCGGTTCGTCGTaGAAACCGACTTCCCGATGTCTGCAAGGGAACGGT +
Preference number: 6 (lower is better)
Translates to: LLRSSGQSFGSS*KPTSRCLQGNG
Trigger: ACCGTTCCCTTGCAGACATCGGGAAGTCGGTTTCCACGACGAACCGAAGCTCTGCCCGGAGCTCCTCAGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS GCA 72 bp AACCTTCCGGTCCAGATCAGCTCCTCCCCGATTTCGTaGATAGCTGGCATCTCAGCTTCGTCGCCACTGCCC +
Preference number: 6 (lower is better)
Translates to: NLPVQISSSPIS*IAGISASSPLP
Trigger: GGGCAGTGGCGACGAAGCTGAGATGCCAGCTATGCACGAAATCGGGGAGGAGCTGATCTGGACCGGAAGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS GCA 72 bp CGGTCGGGCCTTGTGGGCTTAATGACACTAGGCACGTaGAGCTTTGGGGTCTGCAGGCCAAAACAGGCATCG +
Preference number: 6 (lower is better)
Translates to: RSGLVGLMTLGT*SFGVCRPKQAS
Trigger: CGATGCCTGTTTTGGCCTGCAGACCCCAAAGCTGCACGTGCCTAGTGTCATTAAGCCCACAAGGCCCGACCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 72 bp GTGGCGCAGGAAAGCGTGGTCCGGCTGGTGCTTGGCTaGCATGAGGAAAAGCTTACAGCGTTCCCAGAACTG +
Preference number: 6 (lower is better)
Translates to: VAQESVVRLVLG*HEEKLTAFPEL
Trigger: CAGTTCTGGGAACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTTCCTGCGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CAA 90 bp CGACTTCCCGATGTCTGCAAGGGAACGGTGGATGGGCTTCTTGGTTaGGTGACGATGCTTCCTCAGGAGCACGTAGCTGACCCTCTCCCG +
Preference number: 6 (lower is better)
Translates to: RLPDVCKGTVDGLLG*VTMLPQEHVADPLP
Trigger: CGGGAGAGGGTCAGCTACGTGCTCCTGAGGAAGCATCGTCACCAAACCAAGAAGCCCATCCACCGTTCCCTTGCAGACATCGGGAAGTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS TCA 72 bp TGGTTTGGTGACGATGCTTCCTCAGGAGCACGTAGCTaGCCCTCTCCCGGAGCTCAGGTCGCAGAAGTCCAT +
Preference number: 6 (lower is better)
Translates to: WFGDDASSGARS*PSPGAQVAEVH
Trigger: ATGGACTTCTGCGACCTGAGCTCCGGGAGAGGGTCAGCTACGTGCTCCTGAGGAAGCATCGTCACCAAACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS TCA 72 bp GCAGGAAAGCGTGGTCCGGCTGGTGCTTGGCTGGCATaGGGAAAAGCTTACAGCGTTCCCAGAACTGGATGC +
Preference number: 6 (lower is better)
Translates to: AGKRGPAGAWLA*GKAYSVPRTGC
Trigger: GCATCCAGTTCTGGGAACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTTCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS TCA 72 bp TCTGGTCCCCATCATGCTGTAGAGTGTCCATCTCTGTaGAGAGGGTGGGGTTGGGAGCCTCATCTTCCTCCC +
Preference number: 6 (lower is better)
Translates to: SGPHHAVECPSL*RGWGWEPHLPP
Trigger: GGGAGGAAGATGAGGCTCCCAACCCCACCCTCTTCACAGAGATGGACACTCTACAGCATGATGGGGACCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS GCA 72 bp CCCTCCCAGCATGGCAGACTGGACAAGACGAACAAATaGAATGAATGGCTGGTCCAGGAAGTCCACCTCGCC +
Preference number: 6 (lower is better)
Translates to: PSQHGRLDKTNK*NEWLVQEVHLA
Trigger: GGCGAGGTGGACTTCCTGGACCAGCCATTCATTGCATTTGTTCGTCTTGTCCAGTCTGCCATGCTGGGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 72 bp TCCCGATGTCTGCAAGGGAACGGTGGATGGGCTTCTTaGTTTGGTGACGATGCTTCCTCAGGAGCACGTAGC +
Preference number: 6 (lower is better)
Translates to: SRCLQGNGGWAS*FGDDASSGARS
Trigger: GCTACGTGCTCCTGAGGAAGCATCGTCACCAAACCAAGAAGCCCATCCACCGTTCCCTTGCAGACATCGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CAA 90 bp CATGCTTCTACTCTGGGCATGACACAGATGACCATAGCTGGTGCTTaGTCGAATCCTCAGGTCCTCAGTGGAGCGGTGCAGAGTTGGGCC +
Preference number: 6 (lower is better)
Translates to: HASTLGMTQMTIAGA*SNPQVLSGAVQSWA
Trigger: GGCCCAACTCTGCACCGCTCCACTGAGGACCTGAGGATTCGACAAAGCACCAGCTATGGTCATCTGTGTCATGCCCAGAGTAGAAGCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS TCA 72 bp CCAGCATGGCAGACTGGACAAGACGAACAAATGCAATaGATGGCTGGTCCAGGAAGTCCACCTCGCCCACGA +
Preference number: 6 (lower is better)
Translates to: PAWQTGQDEQMQ*MAGPGSPPRPR
Trigger: TCGTGGGCGAGGTGGACTTCCTGGACCAGCCATTCATTGCATTTGTTCGTCTTGTCCAGTCTGCCATGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 72 bp TCCATGGGGATCTTTACAACTGAGGGAGGAAGGAACTaGGGCATTGCCACCTCCTTCTCTGCCGTCTCATGG +
Preference number: 6 (lower is better)
Translates to: SMGIFTTEGGRN*GIATSFSAVSW
Trigger: CCATGAGACGGCAGAGAAGGAGGTGGCAATGCCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCCATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS CAA 72 bp GATGTCTGCAAGGGAACGGTGGATGGGCTTCTTGGTTaGGTGACGATGCTTCCTCAGGAGCACGTAGCTGAC +
Preference number: 6 (lower is better)
Translates to: DVCKGTVDGLLG*VTMLPQEHVAD
Trigger: GTCAGCTACGTGCTCCTGAGGAAGCATCGTCACCAAACCAAGAAGCCCATCCACCGTTCCCTTGCAGACATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CAA 72 bp ACTCTGGGCATGACACAGATGACCATAGCTGGTGCTTaGTCGAATCCTCAGGTCCTCAGTGGAGCGGTGCAG +
Preference number: 6 (lower is better)
Translates to: TLGMTQMTIAGA*SNPQVLSGAVQ
Trigger: CTGCACCGCTCCACTGAGGACCTGAGGATTCGACAAAGCACCAGCTATGGTCATCTGTGTCATGCCCAGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS TCA 72 bp CATAGAAGTCGCTTGGGAACCAGGGCAGCTTCCTCTTaGCATCCAGACACAGTCCTCCAAAGAACCTTCCGG +
Preference number: 6 (lower is better)
Translates to: HRSRLGTRAASS*HPDTVLQRTFR
Trigger: CCGGAAGGTTCTTTGGAGGACTGTGTCTGGATGTCAAGAGGAAGCTGCCCTGGTTCCCAAGCGACTTCTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS TCA 72 bp GGCATCTGTGGCCACCAGAATAAGGCACTGGATGGCTaGGTGAAGACCAATCCAGAGGCGGAACTCCATGTA +
Preference number: 6 (lower is better)
Translates to: GICGHQNKALDG*VKTNPEAELHV
Trigger: TACATGGAGTTCCGCCTCTGGATTGGTCTTCACTCAGCCATCCAGTGCCTTATTCTGGTGGCCACAGATGCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 72 bp GATGGACTGGAGGTGGAAGCCATCATAGAAGTCGCTTaGGAACCAGGGCAGCTTCCTCTTGACATCCAGACA +
Preference number: 6 (lower is better)
Translates to: DGLEVEAIIEVA*EPGQLPLDIQT
Trigger: TGTCTGGATGTCAAGAGGAAGCTGCCCTGGTTCCCAAGCGACTTCTATGATGGCTTCCACCTCCAGTCCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS GCA 72 bp TTCTACTCTGGGCATGACACAGATGACCATAGCTGGTaGTTTGTCGAATCCTCAGGTCCTCAGTGGAGCGGT +
Preference number: 6 (lower is better)
Translates to: FYSGHDTDDHSW*FVESSGPQWSG
Trigger: ACCGCTCCACTGAGGACCTGAGGATTCGACAAAGCACCAGCTATGGTCATCTGTGTCATGCCCAGAGTAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CCA 72 bp GGATACCGTTTTGGGGATCAGATGGGATACCTTCCATaGGGATCTTTACAACTGAGGGAGGAAGGAACTGGG +
Preference number: 6 (lower is better)
Translates to: GYRFGDQMGYLP*GSLQLREEGTG
Trigger: CCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCCATGGAAGGTATCCCATCTGATCCCCAAAACGGTATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039212.8
ENSMUST00000113900.8
CDS GCA 72 bp TCCCGGAGCTCAGGTCGCAGAAGTCCATCCTCTATCTaGTTCTCAATGACATCATCTATGATCTGTGGTAGG +
Preference number: 6 (lower is better)
Translates to: SRSSGRRSPSSI*FSMTSSMICGR
Trigger: CCTACCACAGATCATAGATGATGTCATTGAGAAGCAGATAGAGGATGGACTTCTGCGACCTGAGCTCCGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS TCA 72 bp TATAGGACTTTGCTCTCCCGGAAGGTCCTAATAGTATaGACAGAAATCTGGTGGGGACAGGCACCTCTGTCA +
Preference number: 6 (lower is better)
Translates to: YRTLLSRKVLIV*TEIWWGQAPLS
Trigger: TGACAGAGGTGCCTGTCCCCACCAGATTTCTGTTCATACTATTAGGACCTTCCGGGAGAGCAAAGTCCTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS TCA 72 bp GATTTTGAAATGCAGGGTGATGCTTCGATCCAGTTCTaGGCCACTGATGGAGGAGTCAGAGAGAGTAACTCC +
Preference number: 6 (lower is better)
Translates to: DFEMQGDASIQF*ATDGGVRESNS
Trigger: GGAGTTACTCTCTCTGACTCCTCCATCAGTGGCTCAGAACTGGATCGAAGCATCACCCTGCATTTCAAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113899.8
CDS CAA 90 bp TCATGGACCTCTTTCCTTCTCTTCTTCTTCTTGTCTGTCTCCTTTTaGTCCTTCTCTGGGAGGATATTGTCAATCCAGGCCAGGTCATGC +
Preference number: 6 (lower is better)
Translates to: SWTSFLLFFFLSVSF*SFSGRILSIQARSC
Trigger: GCATGACCTGGCCTGGATTGACAATATCCTCCCAGAGAAGGACAAAAAGGAGACAGACAAGAAGAAGAAGAGAAGGAAAGAGGTCCATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS CAA 90 bp GTTTCAGGGACCACTGGACTTTTTGCAGGCCTGAAAGATGTCCCTTaGAGTCGCTTTTTCTTTGAGAGTAACTGGGAACTGGAAACCCAA +
Preference number: 6 (lower is better)
Translates to: VSGTTGLFAGLKDVP*SRFFFESNWELETQ
Trigger: TTGGGTTTCCAGTTCCCAGTTACTCTCAAAGAAAAAGCGACTCAAAGGGACATCTTTCAGGCCTGCAAAAAGTCCAGTGGTCCCTGAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS CAA 72 bp ACCACTGGACTTTTTGCAGGCCTGAAAGATGTCCCTTaGAGTCGCTTTTTCTTTGAGAGTAACTGGGAACTG +
Preference number: 6 (lower is better)
Translates to: TTGLFAGLKDVP*SRFFFESNWEL
Trigger: CAGTTCCCAGTTACTCTCAAAGAAAAAGCGACTCAAAGGGACATCTTTCAGGCCTGCAAAAAGTCCAGTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8
CDS CAA 72 bp TCTTTCCTTCTCTTCTTCTTCTTGTCTGTCTCCTTTTaGTCCTTCTCTGGGAGGATATTGTCAATCCAGGCC +
Preference number: 6 (lower is better)
Translates to: SFLLFFFLSVSF*SFSGRILSIQA
Trigger: GGCCTGGATTGACAATATCCTCCCAGAGAAGGACAAAAAGGAGACAGACAAGAAGAAGAAGAGAAGGAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039212.8
ENSMUST00000113899.8
ENSMUST00000113900.8
CDS TCA 72 bp TTGAGAGTAACTGGGAACTGGAAACCCAATATGAATTaGAGGGAAATCTTGTTCTGGCTGTCTCCTCTTGTA +
Preference number: 6 (lower is better)
Translates to: LRVTGNWKPNMN*REILFWLSPLV
Trigger: TACAAGAGGAGACAGCCAGAACAAGATTTCCCTTCAATTCATATTGGGTTTCCAGTTCCCAGTTACTCTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113900.8