RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC4A1AP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029141

Ensembl transcript IDs: ENSMUST00000114533.9, ENSMUST00000201789.2, ENSMUST00000201858.4, ENSMUST00000201925.2, ENSMUST00000202214.4, ENSMUST00000202273.4, ENSMUST00000202950.4

Found 295 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATaGCTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTT +
Preference number: 1 (lower is better)
Translates to: EPVTRFYKRSSDSWP*LDVSSQTSCGPHGL
Trigger: AAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
3UTR-3UTR TCA 90 bp CCACTTTCACTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTTCACTACAGCTACAGGACTCACCCTaGGTGGCAGCAGGGTCCAGC +
Preference number: 2 (lower is better)
Translates to: PLSLQAALRPKDSPLSLQLQDSP*VAAGSS
Trigger: GCTGGACCCTGCTGCCACTCAGGGTGAGTCCTGTAG...CTGTAGTGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAGTGAAAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
3UTR CAA 90 bp CAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTaGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTT +
Preference number: 2 (lower is better)
Translates to: QSPDFTNGHLIPGHD*MFPPKHPAVHMVFL
Trigger: AAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
3UTR-3UTR TCA 90 bp CGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGTCTGATTCCTGGCCATaGCTTGATGTTTCCTCCCAA +
Preference number: 2 (lower is better)
Translates to: RKLRRIQWAGSYRKPGIQSDSWP*LDVSSQ
Trigger: TTGGGAGGAAACATCAAGTCATGGCCAGGAATCAGA...CTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAATTTCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
3UTR-3UTR GCA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATTCCTCCCAAACATCCTaGGGTCCACATGGTCTTCCT +
Preference number: 2 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHSSQTS*GPHGLP
Trigger: AGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGA...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
3UTR-3UTR GCA 90 bp GGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTTCCTCCCAAACATCCTaGGGTCCACATGGTCTTCCT +
Preference number: 2 (lower is better)
Translates to: GYRRKSQSPDFTNGHLIPSSQTS*GPHGLP
Trigger: AGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGA...AGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
3UTR TCA 72 bp CCTAAGGATAGCCCACTTTCACTACAGGACTCACCCTaGGTGGCAGCAGGGTCCAGCACAGGCCCTGTTATA +
Preference number: 3 (lower is better)
Translates to: PKDSPLSLQDSP*VAAGSSTGPVI
Trigger: TATAACAGGGCCTGTGCTGGACCCTGCTGCCACTCAGGGTGAGTCCTGTAGTGAAAGTGGGCTATCCTTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
3UTR CCA 72 bp AGGATAGCCCACTTTCACTACAGGACTCACCCTGAGTaGCAGCAGGGTCCAGCACAGGCCCTGTTATATCAG +
Preference number: 3 (lower is better)
Translates to: RIAHFHYRTHPE*QQGPAQALLYQ
Trigger: CTGATATAACAGGGCCTGTGCTGGACCCTGCTGCCACTCAGGGTGAGTCCTGTAGTGAAAGTGGGCTATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
3UTR-3UTR CAA 90 bp CGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGATTCCTGGCCATGACTaGATGTTTCCTCCCAAACAT +
Preference number: 3 (lower is better)
Translates to: RKLRRIQWAGSYRKPGIQIPGHD*MFPPKH
Trigger: ATGTTTGGGAGGAAACATCAAGTCATGGCCAGGAAT...CTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAATTTCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp TGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCGTAGGGGGCCGTGGCTaGGCTGCCCCACGATGGCTC +
Preference number: 4 (lower is better)
Translates to: CFLPNILRSTWSSFGTLSVGGRG*AAPRWL
Trigger: GAGCCATCGTGGGGCAGCCCAGCCACGGCCCCCTAC...GCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp TGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCGGAGCACGAGGGCTCTaGGGGAGCACTCGGGTGCTC +
Preference number: 4 (lower is better)
Translates to: CFLPNILRSTWSSFGTLSGARGL*GSTRVL
Trigger: GAGCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCC...GCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp TCACTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTTCACTACAGGCAGCAGGAGCACGAGGGCTCTaGGGGAGCACTCGGGTGCTC +
Preference number: 4 (lower is better)
Translates to: SLQAALRPKDSPLSLQAAGARGL*GSTRVL
Trigger: GAGCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCC...TGCTGCCTGTAGTGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR TCA 90 bp GGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCGGAGCACGAGGGCTCTaGGGGAGCACTCGGGTGCTC +
Preference number: 4 (lower is better)
Translates to: GESNGQGVIGNQGYRRKSGARGL*GSTRVL
Trigger: GAGCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCC...GCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp TGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCACTCGGGTGCTCCACTaGTGCTTCCAGCTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: CFLPNILRSTWSSFGTLSTRVLH*CFQLQL
Trigger: GAGCTGGAGCTGGAAGCAGCAGTGGAGCACCCGAGT...GCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp GAGAGCTGTGCTGTGCATCTACAGCATTGGCAGGCAGCACTGAGACCTAAGGATACTCGGGTGCTCCACTaGTGCTTCCAGCTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: ESCAVHLQHWQAALRPKDTRVLH*CFQLQL
Trigger: GAGCTGGAGCTGGAAGCAGCAGTGGAGCACCCGAGT...ATCCTTAGGTCTCAGTGCTGCCTGCCAATGCTGTAGATGCACAGCACAGCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR CCA 90 bp GCAGAGAGCTGTGCTGTGCATCTACAGCATTGGCAGGCAGCACTGAGACCTAAGTCGCTACTGACTTCCTaGGGAGCTGGCGCATCTAGC +
Preference number: 4 (lower is better)
Translates to: AESCAVHLQHWQAALRPKSLLTS*GAGASS
Trigger: GCTAGATGCGCCAGCTCCCCAGGAAGTCAGTAGCGA...CTTAGGTCTCAGTGCTGCCTGCCAATGCTGTAGATGCACAGCACAGCTCTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR CCA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGCTGTCCGGCTGCGGTaGCGGGACCTCGGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHAVRLR*RDLGLL
Trigger: GAGGAGCCCGAGGTCCCGCCACCGCAGCCGGACAGC...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGTAGGGGGCCGTGGCTaGGCTGCCCCACGATGGCTC +
Preference number: 4 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPVGGRG*AAPRWL
Trigger: GAGCCATCGTGGGGCAGCCCAGCCACGGCCCCCTAC...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp TTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCCAGCTCCTGAAGAAGCCTaGCACCTCCATCCTCCACTC +
Preference number: 4 (lower is better)
Translates to: FPPKHPAVHMVFLWDSEPAPEEA*HLHPPL
Trigger: GAGTGGAGGATGGAGGTGTCAGGCTTCTTCAGGAGC...TGGCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGGAGCACGAGGGCTCTaGGGGAGCACTCGGGTGCTC +
Preference number: 4 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPGARGL*GSTRVL
Trigger: GAGCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCC...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp GCAGCACTGAGACCTAAGGATAGCCCACTTTCACTACAGGCAGCACTGAGACCTCTTTCAAGGTGCGGGTaGCAAGGATGGTGCCACCCT +
Preference number: 4 (lower is better)
Translates to: AALRPKDSPLSLQAALRPLSRCG*QGWCHP
Trigger: AGGGTGGCACCATCCTTGGCACCCGCACCTTGAAAG...AGGTCTCAGTGCTGCCTGTAGTGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR TCA 90 bp GCAGCACTGAGACCTAAGGATAGCCCACTTTCACTACAGGCAGCACTGAGACCTGGATGCGAGTTTTGTTaGGGAACGTGCCGTGGGTAC +
Preference number: 4 (lower is better)
Translates to: AALRPKDSPLSLQAALRPGCEFC*GTCRGY
Trigger: GTACCCACGGCACGTTCCTCAACAAAACTCGCATCC...AGGTCTCAGTGCTGCCTGTAGTGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR TCA 90 bp CTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCGCTCCTGAAGAAGCCTaGCACCTCCATCCTCCACTC +
Preference number: 4 (lower is better)
Translates to: LDVSSQTSCGPHGLPLGLAPEEA*HLHPPL
Trigger: GAGTGGAGGATGGAGGTGTCAGGCTTCTTCAGGAGC...GAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp TGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCCTGCCATCTCCACTTTaGCCTTCAGGTGGGACCCAT +
Preference number: 4 (lower is better)
Translates to: CFLPNILRSTWSSFGTLSLPSPL*PSGGTH
Trigger: ATGGGTCCCACCTGAAGGTCAAAGTGGAGATGGCAG...GCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp TGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCTCGTGTCTTTCAAGGTaGGGGTGCCAAGGATGGTGC +
Preference number: 4 (lower is better)
Translates to: CFLPNILRSTWSSFGTLSSCLSR*GCQGWC
Trigger: GCACCATCCTTGGCACCCGCACCTTGAAAGACACGA...GCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp GAGAGCTGTGCTGTGCATCTACAGCATTGGCAGGCAGCACTGAGACCTAAGGATCAGGTAACCTCACCCTaGAGAGCCAAGTGCTGTGTC +
Preference number: 4 (lower is better)
Translates to: ESCAVHLQHWQAALRPKDQVTSP*RAKCCV
Trigger: GACACAGCACTTGGCTCTGCAGGGTGAGGTTACCTG...ATCCTTAGGTCTCAGTGCTGCCTGCCAATGCTGTAGATGCACAGCACAGCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR CCA 90 bp CTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTCGCTACTGACTTCCTaGGGAGCTGGCGCATCTAGC +
Preference number: 4 (lower is better)
Translates to: LDVSSQTSCGPHGLPLGLSLLTS*GAGASS
Trigger: GCTAGATGCGCCAGCTCCCCAGGAAGTCAGTAGCGA...GAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp CTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGCGGGTGCCAAGGATaGTGCCACCCTTCAGGGTTT +
Preference number: 4 (lower is better)
Translates to: LDVSSQTSCGPHGLPLGLCGCQG*CHPSGF
Trigger: AAACCCTGAAGGGTGGCACCATCCTTGGCACCCGCA...GAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp CATGACTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGTCCAGCTCAGGCTCCTaGAGAAGCCTGACACCTCCA +
Preference number: 4 (lower is better)
Translates to: HDLMFPPKHPAVHMVFLWSSSGS*RSLTPP
Trigger: TGGAGGTGTCAGGCTTCTTCAGGAGCCTGAGCTGGA...CCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTGTAGGGGGCCGTGGCTaGGCTGCCCCACGATGGCTC +
Preference number: 4 (lower is better)
Translates to: AHANHSYTTGKVERRTQVVGGRG*AAPRWL
Trigger: GAGCCATCGTGGGGCAGCCCAGCCACGGCCCCCTAC...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CCA 90 bp TTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTTGCGGGTGCCAAGGATaGTGCCACCCTTCAGGGTTT +
Preference number: 4 (lower is better)
Translates to: LMFPPKHPAVHMVFLWDSCGCQG*CHPSGF
Trigger: AAACCCTGAAGGGTGGCACCATCCTTGGCACCCGCA...AGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp CAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTGGAGCACGAGGGCTCTaGGGGAGCACTCGGGTGCNN +
Preference number: 4 (lower is better)
Translates to: QSPDFTNGHLIPGHDLMFGARGL*GSTRVX
Trigger: NNGCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCC...AAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201789.2
CDS-3UTR GCA 90 bp CGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGCTTTCAAGGTGCGGGTaGCAAGGATGGTGCCACCCT +
Preference number: 4 (lower is better)
Translates to: RKLRRIQWAGSYRKPGIQLSRCG*QGWCHP
Trigger: AGGGTGGCACCATCCTTGGCACCCGCACCTTGAAAG...CTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAATTTCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATCTTTCAAGGTGCGGGTaGCAAGGATGGTGCCACCCT +
Preference number: 4 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYLSRCG*QGWCHP
Trigger: AGGGTGGCACCATCCTTGGCACCCGCACCTTGAAAG...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp GATAGCCCACTTTCACTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTTCATCGTGTCTTTCAAGGTaGGGGTGCCAAGGATGGTGC +
Preference number: 4 (lower is better)
Translates to: DSPLSLQAALRPKDSPLSSCLSR*GCQGWC
Trigger: GCACCATCCTTGGCACCCGCACCTTGAAAGACACGA...TGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAGTGAAAGTGGGCTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR GCA 90 bp CTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCGGACTCTACAGTAAGTaGGGGGTGGGATGCGAGTTT +
Preference number: 4 (lower is better)
Translates to: LDVSSQTSCGPHGLPLGLGLYSK*GVGCEF
Trigger: AAACTCGCATCCCACCCCGCACTTACTGTAGAGTCC...GAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp CATGACTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGCAGGTAACCTCACCCTaGAGAGCCAAGTGCTGTGTC +
Preference number: 4 (lower is better)
Translates to: HDLMFPPKHPAVHMVFLWQVTSP*RAKCCV
Trigger: GACACAGCACTTGGCTCTGCAGGGTGAGGTTACCTG...CCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp CTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCCGAGATACTGCTTCCTaGCGTAGCAAGCCCAGTGTA +
Preference number: 4 (lower is better)
Translates to: LDVSSQTSCGPHGLPLGLRDTAS*RSKPSV
Trigger: TACACTGGGCTTGCTACGGCAGGAAGCAGTATCTCG...GAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAACTCGGGTGCTCCACTaGTGCTTCCAGCTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPTRVLH*CFQLQL
Trigger: GAGCTGGAGCTGGAAGCAGCAGTGGAGCACCCGAGT...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp CTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTTCACTACAGGACTCACCCCTCTCGGTCTTCCTCTaGTCCCTGAAGGATAAAGAG +
Preference number: 4 (lower is better)
Translates to: LQAALRPKDSPLSLQDSPLSVFL*SLKDKE
Trigger: CTCTTTATCCTTCAGGGACCAGAGGAAGACCGAGAG...GGGTGAGTCCTGTAGTGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR CCA 90 bp TTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCCACTCTCGGTCTTCCTCTaGTCCCTGAAGGATAAAGAG +
Preference number: 4 (lower is better)
Translates to: FPPKHPAVHMVFLWDSEPLSVFL*SLKDKE
Trigger: CTCTTTATCCTTCAGGGACCAGAGGAAGACCGAGAG...TGGCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp GGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCGGATGCGAGTTTTGTTaGGGAACGTGCCGTGGGTAC +
Preference number: 4 (lower is better)
Translates to: GESNGQGVIGNQGYRRKSGCEFC*GTCRGY
Trigger: GTACCCACGGCACGTTCCTCAACAAAACTCGCATCC...GCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp CTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCCCCAGCTCATCATCTTaGCCACTTCTACTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: LDVSSQTSCGPHGLPLGLPSSSS*PLLLLF
Trigger: GAAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGG...GAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp AAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGGCTCCTGAAGAAGCCTaGCACCTCCATCCTCCACTC +
Preference number: 4 (lower is better)
Translates to: KSQSPDFTNGHLIPGHDLAPEEA*HLHPPL
Trigger: GAGTGGAGGATGGAGGTGTCAGGCTTCTTCAGGAGC...CAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp CGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGCATCCAGAGTCCAGCTaGGCCGCGAGACATTCTTTC +
Preference number: 4 (lower is better)
Translates to: RKLRRIQWAGSYRKPGIQHPESS*AARHSF
Trigger: GAAAGAATGTCTCGCGGCGCAGCTGGACTCTGGATG...CTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAATTTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATTCGTGTCTTTCAAGGTaGGGGTGCCAAGGATGGTGC +
Preference number: 4 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYSCLSR*GCQGWC
Trigger: GCACCATCCTTGGCACCCGCACCTTGAAAGACACGA...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATCTCCCATTCCCCACGTaGAGCCCAGCTCATCATCTT +
Preference number: 4 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYLPFPT*SPAHHL
Trigger: AAGATGATGAGCTGGGCTGCACGTGGGGAATGGGAG...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp GATAGCCCACTTTCACTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTTCACCCTGCAGAGCCAAGTaGTGTGTCCTTGCTCATCAA +
Preference number: 4 (lower is better)
Translates to: DSPLSLQAALRPKDSPLSPCRAK*CVLAHQ
Trigger: TTGATGAGCAAGGACACAGCACTTGGCTCTGCAGGG...TGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAGTGAAAGTGGGCTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR GCA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATCAGGTAACCTCACCCTaGAGAGCCAAGTGCTGTGTC +
Preference number: 4 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYQVTSP*RAKCCV
Trigger: GACACAGCACTTGGCTCTGCAGGGTGAGGTTACCTG...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp GAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGCAGGTAACCTCACCCTaGAGAGCCAAGTGCTGTGTC +
Preference number: 4 (lower is better)
Translates to: ESNGQGVIGNQGYRRKSQQVTSP*RAKCCV
Trigger: GACACAGCACTTGGCTCTGCAGGGTGAGGTTACCTG...CTGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AAGGATAGCCCACTTTCACTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTCGAGATACTGCTTCCTaGCGTAGCAAGCCCAGTGTA +
Preference number: 4 (lower is better)
Translates to: KDSPLSLQAALRPKDSPLRDTAS*RSKPSV
Trigger: TACACTGGGCTTGCTACGGCAGGAAGCAGTATCTCG...AAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAGTGAAAGTGGGCTATCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR CCA 90 bp AAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGTCGCTACTGACTTCCTaGGGAGCTGGCGCATCTAGC +
Preference number: 4 (lower is better)
Translates to: KSQSPDFTNGHLIPGHDLSLLTS*GAGASS
Trigger: GCTAGATGCGCCAGCTCCCCAGGAAGTCAGTAGCGA...CAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp CTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTTCGCTGGTGCTGCATaGCTTTTAGTCTCCTTGGAG +
Preference number: 4 (lower is better)
Translates to: LDVSSQTSCGPHGLPLGLFAGAA*LLVSLE
Trigger: CTCCAAGGAGACTAAAAGCCATGCAGCACCAGCGAA...GAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
CDS-3UTR CCA 90 bp CTTTCACTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTTCACTACAGGACGGAAGAAAGGATGGGTaGAAATTTGCCAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: LSLQAALRPKDSPLSLQDGRKDG*KFARPR
Trigger: CCTGGGCCTGGCAAATTTCCACCCATCCTTTCTTCC...GTCCTGTAGTGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAGTGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR CCA 90 bp TGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCTCATTCGCTGGTGCATaGCTTTTAGTCTCCTTGGAG +
Preference number: 4 (lower is better)
Translates to: CFLPNILRSTWSSFGTLSSFAGA*LLVSLE
Trigger: CTCCAAGGAGACTAAAAGCCATGCACCAGCGAATGA...GCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201789.2
CDS-3UTR TCA 90 bp GAGAGCTGTGCTGTGCATCTACAGCATTGGCAGGCAGCACTGAGACCTAAGGATCTTTGCTTGAAGCCTTaGGCCTTTCAGAAATTTCGG +
Preference number: 4 (lower is better)
Translates to: ESCAVHLQHWQAALRPKDLCLKP*AFQKFR
Trigger: CCGAAATTTCTGAAAGGCTCAAGGCTTCAAGCAAAG...ATCCTTAGGTCTCAGTGCTGCCTGCCAATGCTGTAGATGCACAGCACAGCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR TCA 90 bp TGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCCTTTGCTTGAAGCCTTaGGCCTTTCAGAAATTTCGG +
Preference number: 4 (lower is better)
Translates to: CFLPNILRSTWSSFGTLSLCLKP*AFQKFR
Trigger: CCGAAATTTCTGAAAGGCTCAAGGCTTCAAGCAAAG...GCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp CCAGGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCAGCTCAGGCTCCTaGAGAAGCCTGACACCTCCA +
Preference number: 4 (lower is better)
Translates to: PGIQKKEPVTRFYKRSSDSSSGS*RSLTPP
Trigger: TGGAGGTGTCAGGCTTCTTCAGGAGCCTGAGCTGGA...ATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp AGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCTGCCATCTCCACTTTaGCCTTCAGGTGGGACCCAT +
Preference number: 4 (lower is better)
Translates to: RRIQWAGSYRKPGIQKKELPSPL*PSGGTH
Trigger: ATGGGTCCCACCTGAAGGTCAAAGTGGAGATGGCAG...CTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATCTTTCAAGGTGCGGGTaGCAAGGATGGTGCCACCCT +
Preference number: 4 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHLSRCG*QGWCHP
Trigger: AGGGTGGCACCATCCTTGGCACCCGCACCTTGAAAG...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp TGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCCTTGACCACTTCTACTaGTCTTCCCTTCAGTGGTAT +
Preference number: 4 (lower is better)
Translates to: CFLPNILRSTWSSFGTLSLDHFY*SSLQWY
Trigger: ATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAG...GCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATCCCTGCAGAGCCAAGTaGTGTGTCCTTGCTCATCAA +
Preference number: 4 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYPCRAK*CVLAHQ
Trigger: TTGATGAGCAAGGACACAGCACTTGGCTCTGCAGGG...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp TCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTCCTACTCGGGTGCTCCACTaGTGCTTCCAGCTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: SPDFTNGHLIPGHDLMFPTRVLH*CFQLQL
Trigger: GAGCTGGAGCTGGAAGCAGCAGTGGAGCACCCGAGT...AGGAAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp CATGACTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGGATGGGTGGAAATTTaGCAGGCCCAGGAGATTTCT +
Preference number: 4 (lower is better)
Translates to: HDLMFPPKHPAVHMVFLWGWVEI*QAQEIS
Trigger: AGAAATCTCCTGGGCCTGGCAAATTTCCACCCATCC...CCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp GAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGTCCTCCCAAACATCCTaGGGTCCACATGGTCTTCCT +
Preference number: 4 (lower is better)
Translates to: ESNGQGVIGNQGYRRKSQSSQTS*GPHGLP
Trigger: AGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGA...CTGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201925.2
CDS-3UTR CCA 90 bp CATGACTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGACAGTAAGTGCGGGGTaGGATGCGAGTTTTGTTGAG +
Preference number: 4 (lower is better)
Translates to: HDLMFPPKHPAVHMVFLWTVSAG*DASFVE
Trigger: CTCAACAAAACTCGCATCCCACCCCGCACTTACTGT...CCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp GAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGGGAAGAAAGGATGGGTaGAAATTTGCCAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: ESNGQGVIGNQGYRRKSQGRKDG*KFARPR
Trigger: CCTGGGCCTGGCAAATTTCCACCCATCCTTTCTTCC...CTGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp GGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCGGAAGAAAGGATGGGTaGAAATTTGCCAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: GESNGQGVIGNQGYRRKSGRKDG*KFARPR
Trigger: CCTGGGCCTGGCAAATTTCCACCCATCCTTTCTTCC...GCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp TGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCACTTTGACCTTCAGGTaGGACCCATATACAGTAGTC +
Preference number: 4 (lower is better)
Translates to: CFLPNILRSTWSSFGTLSTLTFR*DPYTVV
Trigger: GACTACTGTATATGGGTCCCACCTGAAGGTCAAAGT...GCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp AAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGTCTTCCTCTGGTCCCTaGAGGATAAAGAGCCGAGTG +
Preference number: 4 (lower is better)
Translates to: KSQSPDFTNGHLIPGHDLSSSGP*RIKSRV
Trigger: CACTCGGCTCTTTATCCTTCAGGGACCAGAGGAAGA...CAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATCCCAGCTCATCATCTTaGCCACTTCTACTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYPSSSS*PLLLLF
Trigger: GAAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGG...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR TCA 90 bp GGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCTCAAAAGTCCTCAGGTaGAGTTTCTTCCGGGACACC +
Preference number: 4 (lower is better)
Translates to: GESNGQGVIGNQGYRRKSSKVLR*SFFRDT
Trigger: GGTGTCCCGGAAGAAACTTCACCTGAGGACTTTTGA...GCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp CGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGTCAAAAGTCCTCAGGTaGAGTTTCTTCCGGGACACC +
Preference number: 4 (lower is better)
Translates to: RKLRRIQWAGSYRKPGIQSKVLR*SFFRDT
Trigger: GGTGTCCCGGAAGAAACTTCACCTGAGGACTTTTGA...CTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAATTTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp CAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTTCCAGCTCAGGCTCCTaGAGAAGCCTGACACCTCCA +
Preference number: 4 (lower is better)
Translates to: QSPDFTNGHLIPGHDLMFSSSGS*RSLTPP
Trigger: TGGAGGTGTCAGGCTTCTTCAGGAGCCTGAGCTGGA...AAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp GGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTTCCAGCTCAGGCTCCTaGAGAAGCCTGACACCTCCA +
Preference number: 4 (lower is better)
Translates to: GYRRKSQSPDFTNGHLIPSSSGS*RSLTPP
Trigger: TGGAGGTGTCAGGCTTCTTCAGGAGCCTGAGCTGGA...AGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATCTGCCATCTCCACTTTaGCCTTCAGGTGGGACCCAT +
Preference number: 4 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHLPSPL*PSGGTH
Trigger: ATGGGTCCCACCTGAAGGTCAAAGTGGAGATGGCAG...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp TTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCCATCCACTTGGCTGAGTTaGGATATACTTTCATGGCTT +
Preference number: 4 (lower is better)
Translates to: FPPKHPAVHMVFLWDSEPSTWLS*DILSWL
Trigger: AAGCCATGAAAGTATATCTCAACTCAGCCAAGTGGA...TGGCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp GGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTCGTGTCTTTCAAGGTaGGGGTGCCAAGGATGGTGC +
Preference number: 4 (lower is better)
Translates to: GIQKKEPVTRFYKRSSDSSCLSR*GCQGWC
Trigger: GCACCATCCTTGGCACCCGCACCTTGAAAGACACGA...GGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp CCAGGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATCTCCCATTCCCCACGTaGAGCCCAGCTCATCATCTT +
Preference number: 4 (lower is better)
Translates to: PGIQKKEPVTRFYKRSSDLPFPT*SPAHHL
Trigger: AAGATGATGAGCTGGGCTGCACGTGGGGAATGGGAG...ATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGCCCTGCAGAGCCAAGTaGTGTGTCCTTGCTCATCAA +
Preference number: 4 (lower is better)
Translates to: KSQSPDFTNGHLIPGHDLPCRAK*CVLAHQ
Trigger: TTGATGAGCAAGGACACAGCACTTGGCTCTGCAGGG...CAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp TCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTCCTTGCGGGTGCCAAGGATaGTGCCACCCTTCAGGGTTT +
Preference number: 4 (lower is better)
Translates to: SPDFTNGHLIPGHDLMFPCGCQG*CHPSGF
Trigger: AAACCCTGAAGGGTGGCACCATCCTTGGCACCCGCA...AGGAAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATTGCTGTAGTACAGCATaGTACCGAGACACGGAAGGA +
Preference number: 4 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYCCSTA*YRDTEG
Trigger: TCCTTCCGTGTCTCGGTACCATGCTGTACTACAGCA...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CCA 90 bp GGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCTGCTGTAGTACAGCATaGTACCGAGACACGGAAGGA +
Preference number: 4 (lower is better)
Translates to: GESNGQGVIGNQGYRRKSCCSTA*YRDTEG
Trigger: TCCTTCCGTGTCTCGGTACCATGCTGTACTACAGCA...GCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp GCAGAGAGCTGTGCTGTGCATCTACAGCATTGGCAGGCAGCACTGAGACCTAAGTGCTCTTCCCTTCAGTaGTATTTGCTTCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: AESCAVHLQHWQAALRPKCSSLQ*YLLLLL
Trigger: AAGAAGAAGAAGCAAATACCACTGAAGGGAAGAGCA...CTTAGGTCTCAGTGCTGCCTGCCAATGCTGTAGATGCACAGCACAGCTCTCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR CCA 90 bp CGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGTTCGCTGGTGCTGCATaGCTTTTAGTCTCCTTGGAG +
Preference number: 4 (lower is better)
Translates to: RKLRRIQWAGSYRKPGIQFAGAA*LLVSLE
Trigger: CTCCAAGGAGACTAAAAGCCATGCAGCACCAGCGAA...CTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAATTTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
CDS-3UTR TCA 90 bp AGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCCAGCTCATCATCTTaGCCACTTCTACTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: RRIQWAGSYRKPGIQKKEPSSSS*PLLLLF
Trigger: GAAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGG...CTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp TCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTCCTCTGCCATCTCCACTTTaGCCTTCAGGTGGGACCCAT +
Preference number: 4 (lower is better)
Translates to: SPDFTNGHLIPGHDLMFPLPSPL*PSGGTH
Trigger: ATGGGTCCCACCTGAAGGTCAAAGTGGAGATGGCAG...AGGAAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp GGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCTCTGATTCCTGGCCATaGCTTGATGTTTCCTCCCAA +
Preference number: 4 (lower is better)
Translates to: GESNGQGVIGNQGYRRKSSDSWP*LDVSSQ
Trigger: TTGGGAGGAAACATCAAGTCATGGCCAGGAATCAGA...GCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201925.2
CDS-3UTR GCA 90 bp CAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTCTCCCATTCCCCACGTaGAGCCCAGCTCATCATCTT +
Preference number: 4 (lower is better)
Translates to: QSPDFTNGHLIPGHDLMFLPFPT*SPAHHL
Trigger: AAGATGATGAGCTGGGCTGCACGTGGGGAATGGGAG...AAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGGGATGGGTGGAAATTTaGCAGGCCCAGGAGATTTCT +
Preference number: 4 (lower is better)
Translates to: RRIQWAGSYRKPGIQKKEGWVEI*QAQEIS
Trigger: AGAAATCTCCTGGGCCTGGCAAATTTCCACCCATCC...CTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTTGCGGGTGCCAAGGATaGTGCCACCCTTCAGGGTTT +
Preference number: 4 (lower is better)
Translates to: AHANHSYTTGKVERRTQVCGCQG*CHPSGF
Trigger: AAACCCTGAAGGGTGGCACCATCCTTGGCACCCGCA...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CCA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCATGCTGTAGTACAGCATaGTACCGAGACACGGAAGGA +
Preference number: 4 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPCCSTA*YRDTEG
Trigger: TCCTTCCGTGTCTCGGTACCATGCTGTACTACAGCA...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp AGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCTCTCGGTCTTCCTCTaGTCCCTGAAGGATAAAGAG +
Preference number: 4 (lower is better)
Translates to: RRIQWAGSYRKPGIQKKELSVFL*SLKDKE
Trigger: CTCTTTATCCTTCAGGGACCAGAGGAAGACCGAGAG...CTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGGAAGAAAGGATGGGTaGAAATTTGCCAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHGRKDG*KFARPR
Trigger: CCTGGGCCTGGCAAATTTCCACCCATCCTTTCTTCC...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp TTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTATTTGGAAGAAAGGATaGGTGGAAATTTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: LMFPPKHPAVHMVFLWDSIWKKG*VEICQA
Trigger: GGCCTGGCAAATTTCCACCCATCCTTTCTTCCAAAT...AGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp CATGACTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGATTTGGAAGAAAGGATaGGTGGAAATTTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: HDLMFPPKHPAVHMVFLWIWKKG*VEICQA
Trigger: GGCCTGGCAAATTTCCACCCATCCTTTCTTCCAAAT...CCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTGGATGCGAGTTTTGTTaGGGAACGTGCCGTGGGTAC +
Preference number: 4 (lower is better)
Translates to: AHANHSYTTGKVERRTQVGCEFC*GTCRGY
Trigger: GTACCCACGGCACGTTCCTCAACAAAACTCGCATCC...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR TCA 90 bp TTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAACCCAGCTCATCATCTTaGCCACTTCTACTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: LRRIQWAGSYRKPGIQKKPSSSS*PLLLLF
Trigger: GAAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGG...TTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp GGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTTTTTCTTTCCTGAGTaGATGGCCTCAGCCACCAGC +
Preference number: 4 (lower is better)
Translates to: GIQKKEPVTRFYKRSSDSFFFPE*MASATS
Trigger: GCTGGTGGCTGAGGCCATTCACTCAGGAAAGAAAAA...GGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp TTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAATTTTTCTTTCCTGAGTaGATGGCCTCAGCCACCAGC +
Preference number: 4 (lower is better)
Translates to: LRRIQWAGSYRKPGIQKKFFFPE*MASATS
Trigger: GCTGGTGGCTGAGGCCATTCACTCAGGAAAGAAAAA...TTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATCTTTGCTTGAAGCCTTaGGCCTTTCAGAAATTTCGG +
Preference number: 4 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYLCLKP*AFQKFR
Trigger: CCGAAATTTCTGAAAGGCTCAAGGCTTCAAGCAAAG...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR TCA 90 bp GGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTCAAAAGTCCTCAGGTaGAGTTTCTTCCGGGACACC +
Preference number: 4 (lower is better)
Translates to: GIQKKEPVTRFYKRSSDSSKVLR*SFFRDT
Trigger: GGTGTCCCGGAAGAAACTTCACCTGAGGACTTTTGA...GGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATTCAAAAGTCCTCAGGTaGAGTTTCTTCCGGGACACC +
Preference number: 4 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHSKVLR*SFFRDT
Trigger: GGTGTCCCGGAAGAAACTTCACCTGAGGACTTTTGA...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTCATCCAGAGTCCAGCTaGGCCGCGAGACATTCTTTC +
Preference number: 4 (lower is better)
Translates to: AHANHSYTTGKVERRTQVHPESS*AARHSF
Trigger: GAAAGAATGTCTCGCGGCGCAGCTGGACTCTGGATG...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp TCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTCCTGGACTCTACAGTAAGTaGGGGGTGGGATGCGAGTTT +
Preference number: 4 (lower is better)
Translates to: SPDFTNGHLIPGHDLMFPGLYSK*GVGCEF
Trigger: AAACTCGCATCCCACCCCGCACTTACTGTAGAGTCC...AGGAAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp TGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCTCCAATAATATCTGCTaGTGTTTACGCAATTCCTTC +
Preference number: 4 (lower is better)
Translates to: CFLPNILRSTWSSFGTLSSNNIC*CLRNSF
Trigger: GAAGGAATTGCGTAAACAGCAGCAGATATTATTGGA...GCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATCTTGACCACTTCTACTaGTCTTCCCTTCAGTGGTAT +
Preference number: 4 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYLDHFY*SSLQWY
Trigger: ATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAG...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp CAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTCCCTGCAGAGCCAAGTaGTGTGTCCTTGCTCATCAA +
Preference number: 4 (lower is better)
Translates to: QSPDFTNGHLIPGHDLMFPCRAK*CVLAHQ
Trigger: TTGATGAGCAAGGACACAGCACTTGGCTCTGCAGGG...AAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp TCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTCCTCGAGATACTGCTTCCTaGCGTAGCAAGCCCAGTGTA +
Preference number: 4 (lower is better)
Translates to: SPDFTNGHLIPGHDLMFPRDTAS*RSKPSV
Trigger: TACACTGGGCTTGCTACGGCAGGAAGCAGTATCTCG...AGGAAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp CATGACTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGCCCCATCTAATGTGCTaGCTGATTTCATTTCTGACA +
Preference number: 4 (lower is better)
Translates to: HDLMFPPKHPAVHMVFLWPHLMC*LISFLT
Trigger: TGTCAGAAATGAAATCAGGCAGCACATTAGATGGGG...CCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp TTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTACACCCCATCTAATGTaGTGCCTGATTTCATTTCTG +
Preference number: 4 (lower is better)
Translates to: LMFPPKHPAVHMVFLWDSTPHLM*CLISFL
Trigger: CAGAAATGAAATCAGGCAGCACATTAGATGGGGTGT...AGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AAGGATAGCCCACTTTCACTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTGGTTCATCCTTCATTTaGATTAAAGCTGGAGGGAGT +
Preference number: 4 (lower is better)
Translates to: KDSPLSLQAALRPKDSPLGSSFI*IKAGGS
Trigger: ACTCCCTCCAGCTTTAATGCAAATGAAGGATGAACC...AAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAGTGAAAGTGGGCTATCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR GCA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCATCCACTCGTTCTTCATaGTCCTCCTTCACTTTCTCC +
Preference number: 4 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPSTRSS*SSFTFS
Trigger: GGAGAAAGTGAAGGAGGAGCATGAAGAACGAGTGGA...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp CCAGGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATGGATGGGTGGAAATTTaGCAGGCCCAGGAGATTTCT +
Preference number: 4 (lower is better)
Translates to: PGIQKKEPVTRFYKRSSDGWVEI*QAQEIS
Trigger: AGAAATCTCCTGGGCCTGGCAAATTTCCACCCATCC...ATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGGATGGGTGGAAATTTaGCAGGCCCAGGAGATTTCT +
Preference number: 4 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHGWVEI*QAQEIS
Trigger: AGAAATCTCCTGGGCCTGGCAAATTTCCACCCATCC...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATTGCTGTAGTACAGCATaGTACCGAGACACGGAAGGA +
Preference number: 4 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHCCSTA*YRDTEG
Trigger: TCCTTCCGTGTCTCGGTACCATGCTGTACTACAGCA...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp TTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAACAGTAAGTGCGGGGTaGGATGCGAGTTTTGTTGAG +
Preference number: 4 (lower is better)
Translates to: LRRIQWAGSYRKPGIQKKTVSAG*DASFVE
Trigger: CTCAACAAAACTCGCATCCCACCCCGCACTTACTGT...TTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp TCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTCCTGGAAGAAAGGATGGGTaGAAATTTGCCAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: SPDFTNGHLIPGHDLMFPGRKDG*KFARPR
Trigger: CCTGGGCCTGGCAAATTTCCACCCATCCTTTCTTCC...AGGAAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp CAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTGGAAGAAAGGATGGGTaGAAATTTGCCAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: QSPDFTNGHLIPGHDLMFGRKDG*KFARPR
Trigger: CCTGGGCCTGGCAAATTTCCACCCATCCTTTCTTCC...AAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp CGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGACTTTGACCTTCAGGTaGGACCCATATACAGTAGTC +
Preference number: 4 (lower is better)
Translates to: RKLRRIQWAGSYRKPGIQTLTFR*DPYTVV
Trigger: GACTACTGTATATGGGTCCCACCTGAAGGTCAAAGT...CTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAATTTCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTAGCTCCTGAAGAAGCCTaGCACCTCCATCCTCCACTC +
Preference number: 4 (lower is better)
Translates to: KHLNINTEIEENPMGRELAPEEA*HLHPPL
Trigger: GAGTGGAGGATGGAGGTGTCAGGCTTCTTCAGGAGC...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp ATACACAAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGGGTGCCAAGGATGGTaGCACCCTTCAGGGTTTCGA +
Preference number: 4 (lower is better)
Translates to: IHKHLNINTEIEENPMGRGCQGW*HPSGFR
Trigger: TCGAAACCCTGAAGGGTGGCACCATCCTTGGCACCC...CCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTTGTGTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTGGACTCTACAGTAAGTaGGGGGTGGGATGCGAGTTT +
Preference number: 4 (lower is better)
Translates to: AHANHSYTTGKVERRTQVGLYSK*GVGCEF
Trigger: AAACTCGCATCCCACCCCGCACTTACTGTAGAGTCC...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTCGAGATACTGCTTCCTaGCGTAGCAAGCCCAGTGTA +
Preference number: 4 (lower is better)
Translates to: AHANHSYTTGKVERRTQVRDTAS*RSKPSV
Trigger: TACACTGGGCTTGCTACGGCAGGAAGCAGTATCTCG...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp GGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCCCCATCTAATGTGCTaGCTGATTTCATTTCTGACA +
Preference number: 4 (lower is better)
Translates to: GESNGQGVIGNQGYRRKSPHLMC*LISFLT
Trigger: TGTCAGAAATGAAATCAGGCAGCACATTAGATGGGG...GCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATCCCCATCTAATGTGCTaGCTGATTTCATTTCTGACA +
Preference number: 4 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYPHLMC*LISFLT
Trigger: TGTCAGAAATGAAATCAGGCAGCACATTAGATGGGG...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp CGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGGGTTCATCCTTCATTTaGATTAAAGCTGGAGGGAGT +
Preference number: 4 (lower is better)
Translates to: RKLRRIQWAGSYRKPGIQGSSFI*IKAGGS
Trigger: ACTCCCTCCAGCTTTAATGCAAATGAAGGATGAACC...CTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAATTTCCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATTCCACTCGTTCTTCATaGTCCTCCTTCACTTTCTCC +
Preference number: 4 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHSTRSS*SSFTFS
Trigger: GGAGAAAGTGAAGGAGGAGCATGAAGAACGAGTGGA...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp TCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTCCTGGATGGGTGGAAATTTaGCAGGCCCAGGAGATTTCT +
Preference number: 4 (lower is better)
Translates to: SPDFTNGHLIPGHDLMFPGWVEI*QAQEIS
Trigger: AGAAATCTCCTGGGCCTGGCAAATTTCCACCCATCC...AGGAAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp CAGGCTAGCTACATGAGATACTGTCTCCAAGTTTTTCAACTAGAACTACTTATATCGCTACTGACTTCCTaGGGAGCTGGCGCATCTAGC +
Preference number: 4 (lower is better)
Translates to: QASYMRYCLQVFQLELLISLLTS*GAGASS
Trigger: GCTAGATGCGCCAGCTCCCCAGGAAGTCAGTAGCGA...TATAAGTAGTTCTAGTTGAAAAACTTGGAGACAGTATCTCATGTAGCTAGCCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CCA 90 bp GGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTACAGTAAGTGCGGGGTaGGATGCGAGTTTTGTTGAG +
Preference number: 4 (lower is better)
Translates to: GYRRKSQSPDFTNGHLIPTVSAG*DASFVE
Trigger: CTCAACAAAACTCGCATCCCACCCCGCACTTACTGT...AGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp CATGACTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGTGCTCTTCCCTTCAGTaGTATTTGCTTCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: HDLMFPPKHPAVHMVFLWCSSLQ*YLLLLL
Trigger: AAGAAGAAGAAGCAAATACCACTGAAGGGAAGAGCA...CCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp AGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGATTTGGAAGAAAGGATaGGTGGAAATTTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: RRIQWAGSYRKPGIQKKEIWKKG*VEICQA
Trigger: GGCCTGGCAAATTTCCACCCATCCTTTCTTCCAAAT...CTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp AAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATTTGGAAGAAAGGATaGGTGGAAATTTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: KSQSPDFTNGHLIPGHDLIWKKG*VEICQA
Trigger: GGCCTGGCAAATTTCCACCCATCCTTTCTTCCAAAT...CAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp AGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGACTTTGACCTTCAGGTaGGACCCATATACAGTAGTC +
Preference number: 4 (lower is better)
Translates to: RRIQWAGSYRKPGIQKKETLTFR*DPYTVV
Trigger: GACTACTGTATATGGGTCCCACCTGAAGGTCAAAGT...CTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTAGGATGCGAGTTTTGTTaGGGAACGTGCCGTGGGTAC +
Preference number: 4 (lower is better)
Translates to: KHLNINTEIEENPMGRELGCEFC*GTCRGY
Trigger: GTACCCACGGCACGTTCCTCAACAAAACTCGCATCC...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTTTTTTCTTTCCTGAGTaGATGGCCTCAGCCACCAGC +
Preference number: 4 (lower is better)
Translates to: AHANHSYTTGKVERRTQVFFFPE*MASATS
Trigger: GCTGGTGGCTGAGGCCATTCACTCAGGAAAGAAAAA...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
44% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR TCA 90 bp CCAGGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATCTTTGCTTGAAGCCTTaGGCCTTTCAGAAATTTCGG +
Preference number: 4 (lower is better)
Translates to: PGIQKKEPVTRFYKRSSDLCLKP*AFQKFR
Trigger: CCGAAATTTCTGAAAGGCTCAAGGCTTCAAGCAAAG...ATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp ATACACAAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGCTGCCATCTCCACTTTaGCCTTCAGGTGGGACCCAT +
Preference number: 4 (lower is better)
Translates to: IHKHLNINTEIEENPMGRLPSPL*PSGGTH
Trigger: ATGGGTCCCACCTGAAGGTCAAAGTGGAGATGGCAG...CCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTTGTGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTACTGCCATCTCCACTTTaGCCTTCAGGTGGGACCCAT +
Preference number: 4 (lower is better)
Translates to: KHLNINTEIEENPMGRELLPSPL*PSGGTH
Trigger: ATGGGTCCCACCTGAAGGTCAAAGTGGAGATGGCAG...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTACATCCAGAGTCCAGCTaGGCCGCGAGACATTCTTTC +
Preference number: 4 (lower is better)
Translates to: KHLNINTEIEENPMGRELHPESS*AARHSF
Trigger: GAAAGAATGTCTCGCGGCGCAGCTGGACTCTGGATG...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp ATACACAAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGCATCCAGAGTCCAGCTaGGCCGCGAGACATTCTTTC +
Preference number: 4 (lower is better)
Translates to: IHKHLNINTEIEENPMGRHPESS*AARHSF
Trigger: GAAAGAATGTCTCGCGGCGCAGCTGGACTCTGGATG...CCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTTGTGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp TTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTTCCAATAATATCTGCTaGTGTTTACGCAATTCCTTC +
Preference number: 4 (lower is better)
Translates to: LMFPPKHPAVHMVFLWDSSNNIC*CLRNSF
Trigger: GAAGGAATTGCGTAAACAGCAGCAGATATTATTGGA...AGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp GGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCCTTGACCACTTCTACTaGTCTTCCCTTCAGTGGTAT +
Preference number: 4 (lower is better)
Translates to: GIQKKEPVTRFYKRSSDSLDHFY*SSLQWY
Trigger: ATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAG...GGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp CCAGGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATCTTGACCACTTCTACTaGTCTTCCCTTCAGTGGTAT +
Preference number: 4 (lower is better)
Translates to: PGIQKKEPVTRFYKRSSDLDHFY*SSLQWY
Trigger: ATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAG...ATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTACTCCCATTCCCCACGTaGAGCCCAGCTCATCATCTT +
Preference number: 4 (lower is better)
Translates to: KHLNINTEIEENPMGRELLPFPT*SPAHHL
Trigger: AAGATGATGAGCTGGGCTGCACGTGGGGAATGGGAG...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCCCATCTAATGTGCTaGCTGATTTCATTTCTGACA +
Preference number: 4 (lower is better)
Translates to: RRIQWAGSYRKPGIQKKEPHLMC*LISFLT
Trigger: TGTCAGAAATGAAATCAGGCAGCACATTAGATGGGG...CTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGCCCCATCTAATGTGCTaGCTGATTTCATTTCTGACA +
Preference number: 4 (lower is better)
Translates to: KSQSPDFTNGHLIPGHDLPHLMC*LISFLT
Trigger: TGTCAGAAATGAAATCAGGCAGCACATTAGATGGGG...CAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGACACCCCATCTAATGTaGTGCCTGATTTCATTTCTG +
Preference number: 4 (lower is better)
Translates to: RRIQWAGSYRKPGIQKKETPHLM*CLISFL
Trigger: CAGAAATGAAATCAGGCAGCACATTAGATGGGGTGT...CTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTACAGTAAGTGCGGGGTaGGATGCGAGTTTTGTTGAG +
Preference number: 4 (lower is better)
Translates to: AHANHSYTTGKVERRTQVTVSAG*DASFVE
Trigger: CTCAACAAAACTCGCATCCCACCCCGCACTTACTGT...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CCA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATTGCTCTTCCCTTCAGTaGTATTTGCTTCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYCSSLQ*YLLLLL
Trigger: AAGAAGAAGAAGCAAATACCACTGAAGGGAAGAGCA...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CCA 90 bp GGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCATTTGGAAGAAAGGATaGGTGGAAATTTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: GIQKKEPVTRFYKRSSDSIWKKG*VEICQA
Trigger: GGCCTGGCAAATTTCCACCCATCCTTTCTTCCAAAT...GGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp TTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAACTTTGACCTTCAGGTaGGACCCATATACAGTAGTC +
Preference number: 4 (lower is better)
Translates to: LRRIQWAGSYRKPGIQKKTLTFR*DPYTVV
Trigger: GACTACTGTATATGGGTCCCACCTGAAGGTCAAAGT...TTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATACTTTGACCTTCAGGTaGGACCCATATACAGTAGTC +
Preference number: 4 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHTLTFR*DPYTVV
Trigger: GACTACTGTATATGGGTCCCACCTGAAGGTCAAAGT...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR TCA 90 bp TTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAATCCACTTGGCTGAGTTaGGATATACTTTCATGGCTT +
Preference number: 4 (lower is better)
Translates to: LRRIQWAGSYRKPGIQKKSTWLS*DILSWL
Trigger: AAGCCATGAAAGTATATCTCAACTCAGCCAAGTGGA...TTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTAGGACTCTACAGTAAGTaGGGGGTGGGATGCGAGTTT +
Preference number: 4 (lower is better)
Translates to: KHLNINTEIEENPMGRELGLYSK*GVGCEF
Trigger: AAACTCGCATCCCACCCCGCACTTACTGTAGAGTCC...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp GGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCGGTTCATCCTTCATTTaGATTAAAGCTGGAGGGAGT +
Preference number: 4 (lower is better)
Translates to: GIQKKEPVTRFYKRSSDSGSSFI*IKAGGS
Trigger: ACTCCCTCCAGCTTTAATGCAAATGAAGGATGAACC...GGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp GATAGCCCACTTTCACTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTTCATTGAAGAGCCTTCTTTaGATCCTTTATATAAAACGC +
Preference number: 4 (lower is better)
Translates to: DSPLSLQAALRPKDSPLSLKSLL*ILYIKR
Trigger: GCGTTTTATATAAAGGATCCAAAGAAGGCTCTTCAA...TGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAGTGAAAGTGGGCTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR CCA 90 bp CGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGTTTATATTCATTCGCTaGTGCATGGCTTTTAGTCTC +
Preference number: 4 (lower is better)
Translates to: RKLRRIQWAGSYRKPGIQFIFIR*CMAFSL
Trigger: GAGACTAAAAGCCATGCACCAGCGAATGAATATAAA...CTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAATTTCCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201789.2
CDS-3UTR TCA 90 bp CAGGCTAGCTACATGAGATACTGTCTCCAAGTTTTTCAACTAGAACTACTTATATCAAAAGTCCTCAGGTaGAGTTTCTTCCGGGACACC +
Preference number: 4 (lower is better)
Translates to: QASYMRYCLQVFQLELLISKVLR*SFFRDT
Trigger: GGTGTCCCGGAAGAAACTTCACCTGAGGACTTTTGA...TATAAGTAGTTCTAGTTGAAAAACTTGGAGACAGTATCTCATGTAGCTAGCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp ATACACAAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGGATGGGTGGAAATTTaGCAGGCCCAGGAGATTTCT +
Preference number: 4 (lower is better)
Translates to: IHKHLNINTEIEENPMGRGWVEI*QAQEIS
Trigger: AGAAATCTCCTGGGCCTGGCAAATTTCCACCCATCC...CCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTTGTGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp CAGGCTAGCTACATGAGATACTGTCTCCAAGTTTTTCAACTAGAACTACTTATACTCTCGGTCTTCCTCTaGTCCCTGAAGGATAAAGAG +
Preference number: 4 (lower is better)
Translates to: QASYMRYCLQVFQLELLILSVFL*SLKDKE
Trigger: CTCTTTATCCTTCAGGGACCAGAGGAAGACCGAGAG...TATAAGTAGTTCTAGTTGAAAAACTTGGAGACAGTATCTCATGTAGCTAGCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR TCA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTATTCCTGGCCATGACTTaGTGTTTCCTCCCAAACATC +
Preference number: 4 (lower is better)
Translates to: KHLNINTEIEENPMGRELFLAMT*CFLPNI
Trigger: GATGTTTGGGAGGAAACATCAAGTCATGGCCAGGAA...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201925.2
CDS-3UTR GCA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTACACCCCATCTAATGTaGTGCCTGATTTCATTTCTG +
Preference number: 4 (lower is better)
Translates to: AHANHSYTTGKVERRTQVTPHLM*CLISFL
Trigger: CAGAAATGAAATCAGGCAGCACATTAGATGGGGTGT...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp ATACACAAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGTCCACTCGTTCTTCATaGTCCTCCTTCACTTTCTCC +
Preference number: 4 (lower is better)
Translates to: IHKHLNINTEIEENPMGRSTRSS*SSFTFS
Trigger: GGAGAAAGTGAAGGAGGAGCATGAAGAACGAGTGGA...CCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTTGTGTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAATGACGACACTATTTTaGCCATCTCTTGATAATCTT +
Preference number: 4 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPMTTLF*PSLDNL
Trigger: AAGATTATCAAGAGATGGGCAAAATAGTGTCGTCAT...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp TCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTCCTTGCTCTTCCCTTCAGTaGTATTTGCTTCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: SPDFTNGHLIPGHDLMFPCSSLQ*YLLLLL
Trigger: AAGAAGAAGAAGCAAATACCACTGAAGGGAAGAGCA...AGGAAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCATTGAAGAGCCTTCTTTaGATCCTTTATATAAAACGC +
Preference number: 4 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPLKSLL*ILYIKR
Trigger: GCGTTTTATATAAAGGATCCAAAGAAGGCTCTTCAA...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp CAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTTCCAATAATATCTGCTaGTGTTTACGCAATTCCTTC +
Preference number: 4 (lower is better)
Translates to: QSPDFTNGHLIPGHDLMFSNNIC*CLRNSF
Trigger: GAAGGAATTGCGTAAACAGCAGCAGATATTATTGGA...AAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp CCAGGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATATGACGACACTATTTTaGCCATCTCTTGATAATCTT +
Preference number: 4 (lower is better)
Translates to: PGIQKKEPVTRFYKRSSDMTTLF*PSLDNL
Trigger: AAGATTATCAAGAGATGGGCAAAATAGTGTCGTCAT...ATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp ATACACAAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGATTTGGAAGAAAGGATaGGTGGAAATTTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: IHKHLNINTEIEENPMGRIWKKG*VEICQA
Trigger: GGCCTGGCAAATTTCCACCCATCCTTTCTTCCAAAT...CCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTTGTGTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTTCCAATAATATCTGCTaGTGTTTACGCAATTCCTTC +
Preference number: 4 (lower is better)
Translates to: AHANHSYTTGKVERRTQVSNNIC*CLRNSF
Trigger: GAAGGAATTGCGTAAACAGCAGCAGATATTATTGGA...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR GCA 90 bp ATACACAAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGACACCCCATCTAATGTaGTGCCTGATTTCATTTCTG +
Preference number: 4 (lower is better)
Translates to: IHKHLNINTEIEENPMGRTPHLM*CLISFL
Trigger: CAGAAATGAAATCAGGCAGCACATTAGATGGGGTGT...CCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTTGTGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR GCA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTAACACCCCATCTAATGTaGTGCCTGATTTCATTTCTG +
Preference number: 4 (lower is better)
Translates to: KHLNINTEIEENPMGRELTPHLM*CLISFL
Trigger: CAGAAATGAAATCAGGCAGCACATTAGATGGGGTGT...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CCA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTTTGAAGAGCCTTCTTTaGATCCTTTATATAAAACGC +
Preference number: 4 (lower is better)
Translates to: AHANHSYTTGKVERRTQVLKSLL*ILYIKR
Trigger: GCGTTTTATATAAAGGATCCAAAGAAGGCTCTTCAA...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CCA 90 bp ATACACAAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGTTGAAGAGCCTTCTTTaGATCCTTTATATAAAACGC +
Preference number: 4 (lower is better)
Translates to: IHKHLNINTEIEENPMGRLKSLL*ILYIKR
Trigger: GCGTTTTATATAAAGGATCCAAAGAAGGCTCTTCAA...CCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTTGTGTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 90 bp CGGAGTTGCTCCACCGGTGGACCCCCGGTCTCCTGGCTGTCCGGCTaGGGTGGCGGGACCTCGGGCTCCTCACATCCAGAGTCCAGCTGC +
Preference number: 5 (lower is better)
Translates to: RSCSTGGPPVSWLSG*GGGTSGSSHPESSC
Trigger: GCAGCTGGACTCTGGATGTGAGGAGCCCGAGGTCCCGCCACCGCAGCCGGACAGCCAGGAGACCGGGGGTCCACCGGTGGAGCAACTCCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 90 bp GATGGTGCCACCCTTCAGGGTTTCGAGACTGTAGGGGGCCGTGGCTaGGCTGCCCCACGATGGCTCTCGGTACGGAGGAGCCCGGGTCGG +
Preference number: 5 (lower is better)
Translates to: DGATLQGFETVGGRG*AAPRWLSVRRSPGR
Trigger: CCGACCCGGGCTCCTCCGTACCGAGAGCCATCGTGGGGCAGCCCAGCCACGGCCCCCTACAGTCTCGAAACCCTGAAGGGTGGCACCATC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 90 bp CAAGGATGGTGCCACCCTTCAGGGTTTCGAGACTGTAGGGGGCCGTaGCTGGGCTGCCCCACGATGGCTCTCGGTACGGAGGAGCCCGGG +
Preference number: 5 (lower is better)
Translates to: QGWCHPSGFRDCRGP*LGCPTMALGTEEPG
Trigger: CCCGGGCTCCTCCGTACCGAGAGCCATCGTGGGGCAGCCCAGCCACGGCCCCCTACAGTCTCGAAACCCTGAAGGGTGGCACCATCCTTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS TCA 90 bp CGCTGGTGCTGCATGGCTTTTAGTCTCCTTGGAGCACGAGGGCTCTaGGGGAGCACTCGGGTGCTCCACTGCTGCTTCCAGCTCCAGCTC +
Preference number: 5 (lower is better)
Translates to: RWCCMAFSLLGARGL*GSTRVLHCCFQLQL
Trigger: GAGCTGGAGCTGGAAGCAGCAGTGGAGCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGCAGCACCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
CDS GCA 90 bp GGCTGCGGTGGCGGGACCTCGGGCTCCTCACATCCAGAGTCCAGCTaGGCCGCGAGACATTCTTTCTTCACATCCTCAGAAACGGAGGGA +
Preference number: 5 (lower is better)
Translates to: GCGGGTSGSSHPESS*AARHSFFTSSETEG
Trigger: TCCCTCCGTTTCTGAGGATGTGAAGAAAGAATGTCTCGCGGCGCAGCTGGACTCTGGATGTGAGGAGCCCGAGGTCCCGCCACCGCAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 90 bp AAAAGCAGCAGCTCGTGTCTTTCAAGGTGCGGGTGCCAAGGATGGTaGCACCCTTCAGGGTTTCGAGACTGTAGGGGGCCGTGGCTGGGC +
Preference number: 5 (lower is better)
Translates to: KSSSSCLSRCGCQGW*HPSGFRDCRGPWLG
Trigger: GCCCAGCCACGGCCCCCTACAGTCTCGAAACCCTGAAGGGTGGCACCATCCTTGGCACCCGCACCTTGAAAGACACGAGCTGCTGCTTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 90 bp CGAAAAAGCAGCAGCTCGTGTCTTTCAAGGTGCGGGTGCCAAGGATaGTGCCACCCTTCAGGGTTTCGAGACTGTAGGGGGCCGTGGCTG +
Preference number: 5 (lower is better)
Translates to: RKSSSSCLSRCGCQG*CHPSGFRDCRGPWL
Trigger: CAGCCACGGCCCCCTACAGTCTCGAAACCCTGAAGGGTGGCACCATCCTTGGCACCCGCACCTTGAAAGACACGAGCTGCTGCTTTTTCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 90 bp CAAGTCTCCCGAAAAAGCAGCAGCTCGTGTCTTTCAAGGTGCGGGTaGCAAGGATGGTGCCACCCTTCAGGGTTTCGAGACTGTAGGGGG +
Preference number: 5 (lower is better)
Translates to: QVSRKSSSSCLSRCG*QGWCHPSGFRDCRG
Trigger: CCCCCTACAGTCTCGAAACCCTGAAGGGTGGCACCATCCTTGGCACCCGCACCTTGAAAGACACGAGCTGCTGCTTTTTCGGGAGACTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 90 bp GCGCCGCGAGACATTCTTTCTTCACATCCTCAGAAACGGAGGGACTaGAGGCCGGAGCCTTACCCCGTACTGCGGAAGGCACTGGTAAAA +
Preference number: 5 (lower is better)
Translates to: APRDILSSHPQKRRD*RPEPYPVLRKALVK
Trigger: TTTTACCAGTGCCTTCCGCAGTACGGGGTAAGGCTCCGGCCTCCAGTCCCTCCGTTTCTGAGGATGTGAAGAAAGAATGTCTCGCGGCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS TCA 90 bp GCTCCACTGCTGCTTCCAGCTCCAGCTCAGGCTCCTGAAGAAGCCTaGCACCTCCATCCTCCACTCGTTCTTCATGCTCCTCCTTCACTT +
Preference number: 5 (lower is better)
Translates to: APLLLPAPAQAPEEA*HLHPPLVLHAPPSL
Trigger: AAGTGAAGGAGGAGCATGAAGAACGAGTGGAGGATGGAGGTGTCAGGCTTCTTCAGGAGCCTGAGCTGGAGCTGGAAGCAGCAGTGGAGC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS TCA 90 bp AGATATACTTTCATGGCTTTTAGTCTCCTTGGAGCACGAGGGCTCTaGGGGAGCACTCGGGTGCTCCACTGCTGCTTCCAGCTCCAGCTC +
Preference number: 5 (lower is better)
Translates to: RYTFMAFSLLGARGL*GSTRVLHCCFQLQL
Trigger: GAGCTGGAGCTGGAAGCAGCAGTGGAGCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGAAAGTATATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS CCA 90 bp AAAGCGCATTACATGCCCGACGTGGACTCTACAGTAAGTGCGGGGTaGGATGCGAGTTTTGTTGAGGAACGTGCCGTGGGTACTTCCCAG +
Preference number: 5 (lower is better)
Translates to: KAHYMPDVDSTVSAG*DASFVEERAVGTSQ
Trigger: CTGGGAAGTACCCACGGCACGTTCCTCAACAAAACTCGCATCCCACCCCGCACTTACTGTAGAGTCCACGTCGGGCATGTAATGCGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp CTTTCACTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTTCACTACAGGACGGGATGCGAGTTTTGTaGAGGAACGTGCCGTGGGTA +
Preference number: 5 (lower is better)
Translates to: LSLQAALRPKDSPLSLQDGMRVL*RNVPWV
Trigger: TACCCACGGCACGTTCCTCAACAAAACTCGCATCCC...GTCCTGTAGTGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAGTGAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS CCA 90 bp TTCGGCTCATCTCTGTCTTGTTTATATTCATTCGCTGGTGCTGCATaGCTTTTAGTCTCCTTGGAGCACGAGGGCTCTGAGGGAGCACTC +
Preference number: 5 (lower is better)
Translates to: FGSSLSCLYSFAGAA*LLVSLEHEGSEGAL
Trigger: GAGTGCTCCCTCAGAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGCAGCACCAGCGAATGAATATAAACAAGACAGAGATGAGCCGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
CDS-3UTR CAA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATGGGATGCGAGTTTTGTaGAGGAACGTGCCGTGGGTA +
Preference number: 5 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYGMRVL*RNVPWV
Trigger: TACCCACGGCACGTTCCTCAACAAAACTCGCATCCC...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CAA 90 bp GAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGGGGATGCGAGTTTTGTaGAGGAACGTGCCGTGGGTA +
Preference number: 5 (lower is better)
Translates to: ESNGQGVIGNQGYRRKSQGMRVL*RNVPWV
Trigger: TACCCACGGCACGTTCCTCAACAAAACTCGCATCCC...CTGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp CTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTTCACTACAGGACTCACCCGCGAGCACTGTACCATaGCTTCCTTTTTCTTTCCTG +
Preference number: 5 (lower is better)
Translates to: LQAALRPKDSPLSLQDSPASTVP*LPFSFL
Trigger: CAGGAAAGAAAAAGGAAGCAATGGTACAGTGCTCGC...GGGTGAGTCCTGTAGTGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR CAA 90 bp CATGACTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGAGGATGGGTGGAAATTaGCCAGGCCCAGGAGATTTC +
Preference number: 5 (lower is better)
Translates to: HDLMFPPKHPAVHMVFLWRMGGN*PGPGDF
Trigger: GAAATCTCCTGGGCCTGGCAAATTTCCACCCATCCT...CCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS CCA 90 bp TTCTTCGGCTCATCTCTGTCTTGTTTATATTCATTCGCTGGTGCATaGCTTTTAGTCTCCTTGGAGCACGAGGGCTCTGAGGGAGCACTC +
Preference number: 5 (lower is better)
Translates to: FFGSSLSCLYSFAGA*LLVSLEHEGSEGAL
Trigger: GAGTGCTCCCTCAGAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGCACCAGCGAATGAATATAAACAAGACAGAGATGAGCCGAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201789.2
CDS-3UTR CAA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGGTGGGATGCGAGTTTaGTTGAGGAACGTGCCGTGG +
Preference number: 5 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHGGMRV*LRNVPW
Trigger: CCACGGCACGTTCCTCAACAAAACTCGCATCCCACC...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp TTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGGCTCTGACAGAACTTaGCTTGAAGCCTTGAGCCTT +
Preference number: 5 (lower is better)
Translates to: LMFPPKHPAVHMVFLWDSGSDRT*LEALSL
Trigger: AAGGCTCAAGGCTTCAAGCAAAGTTCTGTCAGAGCC...AGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp GAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGAGGATGGGTGGAAATTaGCCAGGCCCAGGAGATTTC +
Preference number: 5 (lower is better)
Translates to: ESNGQGVIGNQGYRRKSQRMGGN*PGPGDF
Trigger: GAAATCTCCTGGGCCTGGCAAATTTCCACCCATCCT...CTGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS TCA 90 bp GCTTCCAGCGAGCACTGTACCATTGCTTCCTTTTTCTTTCCTGAGTaGATGGCCTCAGCCACCAGCTGTTTCCCAGTTGAATCATCTACA +
Preference number: 5 (lower is better)
Translates to: ASSEHCTIASFFFPE*MASATSCFPVESST
Trigger: TGTAGATGATTCAACTGGGAAACAGCTGGTGGCTGAGGCCATTCACTCAGGAAAGAAAAAGGAAGCAATGGTACAGTGCTCGCTGGAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 90 bp CCATTCCCCACGTGCAGCCCAGCTCATCATCTTGACCACTTCTACTaGTCTTCCCTTCAGTGGTATTTGCTTCTTCTTCTTCATCTGAGT +
Preference number: 5 (lower is better)
Translates to: PFPTCSPAHHLDHFY*SSLQWYLLLLLHLS
Trigger: ACTCAGATGAAGAAGAAGAAGCAAATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGGCTGCACGTGGGGAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 90 bp CCAGCGAGCACTGTACCATTGCTTCCTTTTTCTTTCCTGAGTGAATaGCCTCAGCCACCAGCTGTTTCCCAGTTGAATCATCTACAGGTA +
Preference number: 5 (lower is better)
Translates to: PASTVPLLPFSFLSE*PQPPAVSQLNHLQV
Trigger: TACCTGTAGATGATTCAACTGGGAAACAGCTGGTGGCTGAGGCCATTCACTCAGGAAAGAAAAAGGAAGCAATGGTACAGTGCTCGCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATGCCCAGCTCATCATCTaGACCACTTCTACTGCTCTT +
Preference number: 5 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYAQLII*TTSTAL
Trigger: AAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGGC...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CAA 90 bp CATGACTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGCGAGCACTGTACCATaGCTTCCTTTTTCTTTCCTG +
Preference number: 5 (lower is better)
Translates to: HDLMFPPKHPAVHMVFLWASTVP*LPFSFL
Trigger: CAGGAAAGAAAAAGGAAGCAATGGTACAGTGCTCGC...CCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp TCACTACAGGCAGCACTGAGACCTAAGGATAGCCCACTTTCACTACAGGCAGCATCATCTTCCCAGTTCTaGGCTTTCCTTTTCCGAGAT +
Preference number: 5 (lower is better)
Translates to: SLQAALRPKDSPLSLQAASSSQF*AFLFRD
Trigger: ATCTCGGAAAAGGAAAGCCAAGAACTGGGAAGATGA...TGCTGCCTGTAGTGAAAGTGGGCTATCCTTAGGTCTCAGTGCTGCCTGTAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202214.4
CDS-3UTR CAA 90 bp TTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTGAGCCACGGCATCATTTAACTTaGCAACCAGTGACTCAAAAG +
Preference number: 5 (lower is better)
Translates to: FPPKHPAVHMVFLWDSEPRHHLT*QPVTQK
Trigger: CTTTTGAGTCACTGGTTGCAAAGTTAAATGATGCCG...TGGCTCAGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATGGCTCTGACAGAACTTaGCTTGAAGCCTTGAGCCTT +
Preference number: 5 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYGSDRT*LEALSL
Trigger: AAGGCTCAAGGCTTCAAGCAAAGTTCTGTCAGAGCC...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CAA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAAGGATGGGTGGAAATTaGCCAGGCCCAGGAGATTTC +
Preference number: 5 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPRMGGN*PGPGDF
Trigger: GAAATCTCCTGGGCCTGGCAAATTTCCACCCATCCT...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp TCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTCCTGGGATGCGAGTTTTGTaGAGGAACGTGCCGTGGGTA +
Preference number: 5 (lower is better)
Translates to: SPDFTNGHLIPGHDLMFPGMRVL*RNVPWV
Trigger: TACCCACGGCACGTTCCTCAACAAAACTCGCATCCC...AGGAAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp AAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGGCCCAGCTCATCATCTaGACCACTTCTACTGCTCTT +
Preference number: 5 (lower is better)
Translates to: KSQSPDFTNGHLIPGHDLAQLII*TTSTAL
Trigger: AAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGGC...CAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp GAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGCCAGCTGTTTCCCAGTaGAATCATCTACAGGTAACC +
Preference number: 5 (lower is better)
Translates to: ESNGQGVIGNQGYRRKSQPAVSQ*NHLQVT
Trigger: GGTTACCTGTAGATGATTCAACTGGGAAACAGCTGG...CTGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp GGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCAGGATGGGTGGAAATTaGCCAGGCCCAGGAGATTTC +
Preference number: 5 (lower is better)
Translates to: GIQKKEPVTRFYKRSSDSRMGGN*PGPGDF
Trigger: GAAATCTCCTGGGCCTGGCAAATTTCCACCCATCCT...GGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp CCAGGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATAGGATGGGTGGAAATTaGCCAGGCCCAGGAGATTTC +
Preference number: 5 (lower is better)
Translates to: PGIQKKEPVTRFYKRSSDRMGGN*PGPGDF
Trigger: GAAATCTCCTGGGCCTGGCAAATTTCCACCCATCCT...ATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp TTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTCTCCACTTGGCTGAGTaGAGATATACTTTCATGGCT +
Preference number: 5 (lower is better)
Translates to: LMFPPKHPAVHMVFLWDSLHLAE*RYTFMA
Trigger: AGCCATGAAAGTATATCTCAACTCAGCCAAGTGGAG...AGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS GCA 90 bp CTGGGTCATCCTCAGGATATTTGGAAGAAAGGATGGGTGGAAATTTaGCAGGCCCAGGAGATTTCTTTTTCTTCGGCTCATCTCTGTCTT +
Preference number: 5 (lower is better)
Translates to: LGHPQDIWKKGWVEI*QAQEISFSSAHLCL
Trigger: AAGACAGAGATGAGCCGAAGAAAAAGAAATCTCCTGGGCCTGGCAAATTTCCACCCATCCTTTCTTCCAAATATCCTGAGGATGACCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp CATGACTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGTCCCTTCAGTGGTATTaGCTTCTTCTTCTTCATCTG +
Preference number: 5 (lower is better)
Translates to: HDLMFPPKHPAVHMVFLWSLQWY*LLLLHL
Trigger: CAGATGAAGAAGAAGAAGCAAATACCACTGAAGGGA...CCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAGTCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp TTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGCCCAGCTCATCATCTaGACCACTTCTACTGCTCTT +
Preference number: 5 (lower is better)
Translates to: LRRIQWAGSYRKPGIQKKAQLII*TTSTAL
Trigger: AAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGGC...TTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp GGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCGCCCAGCTCATCATCTaGACCACTTCTACTGCTCTT +
Preference number: 5 (lower is better)
Translates to: GIQKKEPVTRFYKRSSDSAQLII*TTSTAL
Trigger: AAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGGC...GGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp AGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGCTGTTTCCCAGTaGAATCATCTACAGGTAACC +
Preference number: 5 (lower is better)
Translates to: RRIQWAGSYRKPGIQKKEPAVSQ*NHLQVT
Trigger: GGTTACCTGTAGATGATTCAACTGGGAAACAGCTGG...CTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCACCAGCTGTTTCCCAGTaGAATCATCTACAGGTAACC +
Preference number: 5 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPPAVSQ*NHLQVT
Trigger: GGTTACCTGTAGATGATTCAACTGGGAAACAGCTGG...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATTCATCTTCCCAGTTCTaGGCTTTCCTTTTCCGAGAT +
Preference number: 5 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYSSSQF*AFLFRD
Trigger: ATCTCGGAAAAGGAAAGCCAAGAACTGGGAAGATGA...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CAA 90 bp TTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTCGGCATCATTTAACTTaGCAACCAGTGACTCAAAAG +
Preference number: 5 (lower is better)
Translates to: LMFPPKHPAVHMVFLWDSRHHLT*QPVTQK
Trigger: CTTTTGAGTCACTGGTTGCAAAGTTAAATGATGCCG...AGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp GGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCGGCTCTGACAGAACTTaGCTTGAAGCCTTGAGCCTT +
Preference number: 5 (lower is better)
Translates to: GIQKKEPVTRFYKRSSDSGSDRT*LEALSL
Trigger: AAGGCTCAAGGCTTCAAGCAAAGTTCTGTCAGAGCC...GGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp CGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGCGGCTCATCTCTGTCTaGTTTATATTCATTCGCTGG +
Preference number: 5 (lower is better)
Translates to: RKLRRIQWAGSYRKPGIQRLISV*FIFIRW
Trigger: CCAGCGAATGAATATAAACAAGACAGAGATGAGCCG...CTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAATTTCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS TCA 90 bp TCCGGGACACCCCATCTAATGTGCTGCCTGATTTCATTTCTGACATaGATGCATCTAAAGAGTCCTGAGATGATGGCTCTGACAGAACTT +
Preference number: 5 (lower is better)
Translates to: SGTPHLMCCLISFLT*MHLKSPEMMALTEL
Trigger: AAGTTCTGTCAGAGCCATCATCTCAGGACTCTTTAGATGCATTCATGTCAGAAATGAAATCAGGCAGCACATTAGATGGGGTGTCCCGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS TCA 90 bp TCCGGGACACCCCATCTAATGTGCTGCCTGATTTCATTTCTGACATaGATGCATCTAAAGAGTCCTGAGATGATGGCTCTGACAGAACTN +
Preference number: 5 (lower is better)
Translates to: SGTPHLMCCLISFLT*MHLKSPEMMALTEL
Trigger: NAGTTCTGTCAGAGCCATCATCTCAGGACTCTTTAGATGCATTCATGTCAGAAATGAAATCAGGCAGCACATTAGATGGGGTGTCCCGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201925.2
CDS-3UTR CAA 90 bp GAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGTCCCTTCAGTGGTATTaGCTTCTTCTTCTTCATCTG +
Preference number: 5 (lower is better)
Translates to: ESNGQGVIGNQGYRRKSQSLQWY*LLLLHL
Trigger: CAGATGAAGAAGAAGAAGCAAATACCACTGAAGGGA...CTGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp ACACATAGCCCTCTGGGTAAACATTTAGTTGAGGGGAGGAGAGGGGCTGAATATTCCCTTCAGTGGTATTaGCTTCTTCTTCTTCATCTG +
Preference number: 5 (lower is better)
Translates to: THSPLGKHLVEGRRGAEYSLQWY*LLLLHL
Trigger: CAGATGAAGAAGAAGAAGCAAATACCACTGAAGGGA...ATATTCAGCCCCTCTCCTCCCCTCAACTAAATGTTTACCCAGAGGGCTATGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CAA 90 bp CTTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCCTTGAAGAGCCTTCTTaGGATCCTTTATATAAAACG +
Preference number: 5 (lower is better)
Translates to: LDVSSQTSCGPHGLPLGLLEEPS*DPLYKT
Trigger: CGTTTTATATAAAGGATCCAAAGAAGGCTCTTCAAG...GAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCATCATCTTCCCAGTTCTaGGCTTTCCTTTTCCGAGAT +
Preference number: 5 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPSSSQF*AFLFRD
Trigger: ATCTCGGAAAAGGAAAGCCAAGAACTGGGAAGATGA...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp GAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGCGGCATCATTTAACTTaGCAACCAGTGACTCAAAAG +
Preference number: 5 (lower is better)
Translates to: ESNGQGVIGNQGYRRKSQRHHLT*QPVTQK
Trigger: CTTTTGAGTCACTGGTTGCAAAGTTAAATGATGCCG...CTGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp CAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGATGTTTGGCTCTGACAGAACTTaGCTTGAAGCCTTGAGCCTT +
Preference number: 5 (lower is better)
Translates to: QSPDFTNGHLIPGHDLMFGSDRT*LEALSL
Trigger: AAGGCTCAAGGCTTCAAGCAAAGTTCTGTCAGAGCC...AAACATCAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp AAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATGACTTGCGGCTCATCTCTGTCTaGTTTATATTCATTCGCTGG +
Preference number: 5 (lower is better)
Translates to: KSQSPDFTNGHLIPGHDLRLISV*FIFIRW
Trigger: CCAGCGAATGAATATAAACAAGACAGAGATGAGCCG...CAAGTCATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCACTCCACTTGGCTGAGTaGAGATATACTTTCATGGCT +
Preference number: 5 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPLHLAE*RYTFMA
Trigger: AGCCATGAAAGTATATCTCAACTCAGCCAAGTGGAG...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp GAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGTTTACTCTGCTCCACTaGGCTGAGTTGAGATATACT +
Preference number: 5 (lower is better)
Translates to: ESNGQGVIGNQGYRRKSQFTLLH*AELRYT
Trigger: AGTATATCTCAACTCAGCCAAGTGGAGCAGAGTAAA...CTGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS CCA 90 bp AGCCCAGCTCATCATCTTGACCACTTCTACTGCTCTTCCCTTCAGTaGTATTTGCTTCTTCTTCTTCATCTGAGTCTTCACCTAACATCT +
Preference number: 5 (lower is better)
Translates to: SPAHHLDHFYCSSLQ*YLLLLLHLSLHLTS
Trigger: AGATGTTAGGTGAAGACTCAGATGAAGAAGAAGAAGCAAATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp AGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCATCCCTTCAGTGGTATTaGCTTCTTCTTCTTCATCTG +
Preference number: 5 (lower is better)
Translates to: RIQWAGSYRKPGIQKKEPSLQWY*LLLLHL
Trigger: CAGATGAAGAAGAAGAAGCAAATACCACTGAAGGGA...TGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp GGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTCATCTTCCCAGTTCTaGGCTTTCCTTTTCCGAGAT +
Preference number: 5 (lower is better)
Translates to: GIQKKEPVTRFYKRSSDSSSSQF*AFLFRD
Trigger: ATCTCGGAAAAGGAAAGCCAAGAACTGGGAAGATGA...GGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp TTGAGGAGAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAACGGCTCATCTCTGTCTaGTTTATATTCATTCGCTGG +
Preference number: 5 (lower is better)
Translates to: LRRIQWAGSYRKPGIQKKRLISV*FIFIRW
Trigger: CCAGCGAATGAATATAAACAAGACAGAGATGAGCCG...TTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTCTCCTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp TTGATGTTTCCTCCCAAACATCCTGCGGTCCACATGGTCTTCCTTTGGGACTCTTATTTTGCCCATCTCTaGATAATCTTTACTCTGCTC +
Preference number: 5 (lower is better)
Translates to: LMFPPKHPAVHMVFLWDSYFAHL*IIFTLL
Trigger: GAGCAGAGTAAAGATTATCAAGAGATGGGCAAAATA...AGAGTCCCAAAGGAAGACCATGTGGACCGCAGGATGTTTGGGAGGAAACATCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp AGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTGGCCATACTTTGCTTGAAGCCTaGAGCCTTTCAGAAATTTCG +
Preference number: 5 (lower is better)
Translates to: RRKSQSPDFTNGHLIPGHTLLEA*SLSEIS
Trigger: CGAAATTTCTGAAAGGCTCAAGGCTTCAAGCAAAGT...ATGGCCAGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp GGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTCCTCGGCTCATCTCTGTCTaGTTTATATTCATTCGCTGG +
Preference number: 5 (lower is better)
Translates to: GYRRKSQSPDFTNGHLIPRLISV*FIFIRW
Trigger: CCAGCGAATGAATATAAACAAGACAGAGATGAGCCG...AGGAATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp CCAGGGATACAGAAGAAAGAGCCAGTCACCAGATTTTACAAACGGTCATCTGATTTTACTCTGCTCCACTaGGCTGAGTTGAGATATACT +
Preference number: 5 (lower is better)
Translates to: PGIQKKEPVTRFYKRSSDFTLLH*AELRYT
Trigger: AGTATATCTCAACTCAGCCAAGTGGAGCAGAGTAAA...ATCAGATGACCGTTTGTAAAATCTGGTGACTGGCTCTTTCTTCTGTATCCCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp GAATCCAATGGGCAGGGAGTTATAGGAAACCAGGGATACAGAAGAAAGAGCCAGTATTTTGCCCATCTCTaGATAATCTTTACTCTGCTC +
Preference number: 5 (lower is better)
Translates to: ESNGQGVIGNQGYRRKSQYFAHL*IIFTLL
Trigger: GAGCAGAGTAAAGATTATCAAGAGATGGGCAAAATA...CTGGCTCTTTCTTCTGTATCCCTGGTTTCCTATAACTCCCTGCCCATTGGATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp CAGGCTAGCTACATGAGATACTGTCTCCAAGTTTTTCAACTAGAACTACTTATACCAGCTGTTTCCCAGTaGAATCATCTACAGGTAACC +
Preference number: 5 (lower is better)
Translates to: QASYMRYCLQVFQLELLIPAVSQ*NHLQVT
Trigger: GGTTACCTGTAGATGATTCAACTGGGAAACAGCTGG...TATAAGTAGTTCTAGTTGAAAAACTTGGAGACAGTATCTCATGTAGCTAGCCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CAA 90 bp CAGGCTAGCTACATGAGATACTGTCTCCAAGTTTTTCAACTAGAACTACTTATAGCGAGCACTGTACCATaGCTTCCTTTTTCTTTCCTG +
Preference number: 5 (lower is better)
Translates to: QASYMRYCLQVFQLELLIASTVP*LPFSFL
Trigger: CAGGAAAGAAAAAGGAAGCAATGGTACAGTGCTCGC...TATAAGTAGTTCTAGTTGAAAAACTTGGAGACAGTATCTCATGTAGCTAGCCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CAA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTACTTTGCTTGAAGCCTaGAGCCTTTCAGAAATTTCG +
Preference number: 5 (lower is better)
Translates to: AHANHSYTTGKVERRTQVTLLEA*SLSEIS
Trigger: CGAAATTTCTGAAAGGCTCAAGGCTTCAAGCAAAGT...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CAA 90 bp ATACACAAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGCGGCTCATCTCTGTCTaGTTTATATTCATTCGCTGG +
Preference number: 5 (lower is better)
Translates to: IHKHLNINTEIEENPMGRRLISV*FIFIRW
Trigger: CCAGCGAATGAATATAAACAAGACAGAGATGAGCCG...CCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTTGTGTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTACGGCTCATCTCTGTCTaGTTTATATTCATTCGCTGG +
Preference number: 5 (lower is better)
Translates to: KHLNINTEIEENPMGRELRLISV*FIFIRW
Trigger: CCAGCGAATGAATATAAACAAGACAGAGATGAGCCG...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000114533.9
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTAATTCCTGGCCATGACTaGATGTTTCCTCCCAAACAT +
Preference number: 5 (lower is better)
Translates to: KHLNINTEIEENPMGRELIPGHD*MFPPKH
Trigger: ATGTTTGGGAGGAAACATCAAGTCATGGCCAGGAAT...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201925.2
CDS-3UTR CAA 90 bp GCACATGCAAACCACAGCTACACAACAGGTAAAGTAGAAAGAAGAACACAAGTTCTTGAAGAGCCTTCTTaGGATCCTTTATATAAAACG +
Preference number: 5 (lower is better)
Translates to: AHANHSYTTGKVERRTQVLEEPS*DPLYKT
Trigger: CGTTTTATATAAAGGATCCAAAGAAGGCTCTTCAAG...AACTTGTGTTCTTCTTTCTACTTTACCTGTTGTGTAGCTGTGGTTTGCATGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CAA 90 bp CAGGCTAGCTACATGAGATACTGTCTCCAAGTTTTTCAACTAGAACTACTTATACGGCATCATTTAACTTaGCAACCAGTGACTCAAAAG +
Preference number: 5 (lower is better)
Translates to: QASYMRYCLQVFQLELLIRHHLT*QPVTQK
Trigger: CTTTTGAGTCACTGGTTGCAAAGTTAAATGATGCCG...TATAAGTAGTTCTAGTTGAAAAACTTGGAGACAGTATCTCATGTAGCTAGCCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201858.4
CDS-3UTR CAA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTAACTTTGCTTGAAGCCTaGAGCCTTTCAGAAATTTCG +
Preference number: 5 (lower is better)
Translates to: KHLNINTEIEENPMGRELTLLEA*SLSEIS
Trigger: CGAAATTTCTGAAAGGCTCAAGGCTTCAAGCAAAGT...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS-3UTR CAA 90 bp AAACACTTAAATATAAACACGGAAATTGAGGAGAATCCAATGGGCAGGGAGTTACTTGAAGAGCCTTCTTaGGATCCTTTATATAAAACG +
Preference number: 5 (lower is better)
Translates to: KHLNINTEIEENPMGRELLEEPS*DPLYKT
Trigger: CGTTTTATATAAAGGATCCAAAGAAGGCTCTTCAAG...TAACTCCCTGCCCATTGGATTCTCCTCAATTTCCGTGTTTATATTTAAGTGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 72 bp GAGCGGAGTTGCTCCACCGGTGGACCCCCGGTCTCCTaGCTGTCCGGCTGCGGTGGCGGGACCTCGGGCTCC +
Preference number: 6 (lower is better)
Translates to: ERSCSTGGPPVS*LSGCGGGTSGS
Trigger: GGAGCCCGAGGTCCCGCCACCGCAGCCGGACAGCCAGGAGACCGGGGGTCCACCGGTGGAGCAACTCCGCTC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 72 bp TCCACCGGTGGACCCCCGGTCTCCTGGCTGTCCGGCTaGGGTGGCGGGACCTCGGGCTCCTCACATCCAGAG +
Preference number: 6 (lower is better)
Translates to: STGGPPVSWLSG*GGGTSGSSHPE
Trigger: CTCTGGATGTGAGGAGCCCGAGGTCCCGCCACCGCAGCCGGACAGCCAGGAGACCGGGGGTCCACCGGTGGA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 72 bp TCCTTGGAGCACGAGGGCTCTGAGGGAGCACTCGGGTaGTCCACTGCTGCTTCCAGCTCCAGCTCAGGCTCC +
Preference number: 6 (lower is better)
Translates to: SLEHEGSEGALG*STAASSSSSGS
Trigger: GGAGCCTGAGCTGGAGCTGGAAGCAGCAGTGGAGCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCCAAGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS GCA 72 bp AGCTCGTGTCTTTCAAGGTGCGGGTGCCAAGGATGGTaGCACCCTTCAGGGTTTCGAGACTGTAGGGGGCCG +
Preference number: 6 (lower is better)
Translates to: SSCLSRCGCQGW*HPSGFRDCRGP
Trigger: CGGCCCCCTACAGTCTCGAAACCCTGAAGGGTGGCACCATCCTTGGCACCCGCACCTTGAAAGACACGAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS TCA 72 bp TGCATGGCTTTTAGTCTCCTTGGAGCACGAGGGCTCTaGGGGAGCACTCGGGTGCTCCACTGCTGCTTCCAG +
Preference number: 6 (lower is better)
Translates to: CMAFSLLGARGL*GSTRVLHCCFQ
Trigger: CTGGAAGCAGCAGTGGAGCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
CDS GCA 72 bp GGCGGGACCTCGGGCTCCTCACATCCAGAGTCCAGCTaGGCCGCGAGACATTCTTTCTTCACATCCTCAGAA +
Preference number: 6 (lower is better)
Translates to: GGTSGSSHPESS*AARHSFFTSSE
Trigger: TTCTGAGGATGTGAAGAAAGAATGTCTCGCGGCGCAGCTGGACTCTGGATGTGAGGAGCCCGAGGTCCCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 72 bp AGCAGCTCGTGTCTTTCAAGGTGCGGGTGCCAAGGATaGTGCCACCCTTCAGGGTTTCGAGACTGTAGGGGG +
Preference number: 6 (lower is better)
Translates to: SSSCLSRCGCQG*CHPSGFRDCRG
Trigger: CCCCCTACAGTCTCGAAACCCTGAAGGGTGGCACCATCCTTGGCACCCGCACCTTGAAAGACACGAGCTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS TCA 72 bp TTCATGGCTTTTAGTCTCCTTGGAGCACGAGGGCTCTaGGGGAGCACTCGGGTGCTCCACTGCTGCTTCCAG +
Preference number: 6 (lower is better)
Translates to: FMAFSLLGARGL*GSTRVLHCCFQ
Trigger: CTGGAAGCAGCAGTGGAGCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS GCA 72 bp CGAAAAAGCAGCAGCTCGTGTCTTTCAAGGTGCGGGTaGCAAGGATGGTGCCACCCTTCAGGGTTTCGAGAC +
Preference number: 6 (lower is better)
Translates to: RKSSSSCLSRCG*QGWCHPSGFRD
Trigger: GTCTCGAAACCCTGAAGGGTGGCACCATCCTTGGCACCCGCACCTTGAAAGACACGAGCTGCTGCTTTTTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 72 bp GACATTCTTTCTTCACATCCTCAGAAACGGAGGGACTaGAGGCCGGAGCCTTACCCCGTACTGCGGAAGGCA +
Preference number: 6 (lower is better)
Translates to: DILSSHPQKRRD*RPEPYPVLRKA
Trigger: TGCCTTCCGCAGTACGGGGTAAGGCTCCGGCCTCCAGTCCCTCCGTTTCTGAGGATGTGAAGAAAGAATGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 72 bp TACATGCCCGACGTGGACTCTACAGTAAGTGCGGGGTaGGATGCGAGTTTTGTTGAGGAACGTGCCGTGGGT +
Preference number: 6 (lower is better)
Translates to: YMPDVDSTVSAG*DASFVEERAVG
Trigger: ACCCACGGCACGTTCCTCAACAAAACTCGCATCCCACCCCGCACTTACTGTAGAGTCCACGTCGGGCATGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CAA 72 bp TATTCATTCGCTGGTGCTGCATGGCTTTTAGTCTCCTaGGAGCACGAGGGCTCTGAGGGAGCACTCGGGTGC +
Preference number: 6 (lower is better)
Translates to: YSFAGAAWLLVS*EHEGSEGALGC
Trigger: GCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGCAGCACCAGCGAATGAATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
CDS CAA 90 bp CCAGTGTATCAAGGACCCGGCAGGCTTCCAGCGAGCACTGTACCATaGCTTCCTTTTTCTTTCCTGAGTGAATGGCCTCAGCCACCAGCT +
Preference number: 6 (lower is better)
Translates to: PVYQGPGRLPASTVP*LPFSFLSEWPQPPA
Trigger: AGCTGGTGGCTGAGGCCATTCACTCAGGAAAGAAAAAGGAAGCAATGGTACAGTGCTCGCTGGAAGCCTGCCGGGTCCTTGATACACTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS TCA 72 bp CTCTACAGTAAGTGCGGGGTGGGATGCGAGTTTTGTTaGGGAACGTGCCGTGGGTACTTCCCAGATCGTAGA +
Preference number: 6 (lower is better)
Translates to: LYSKCGVGCEFC*GTCRGYFPDRR
Trigger: TCTACGATCTGGGAAGTACCCACGGCACGTTCCTCAACAAAACTCGCATCCCACCCCGCACTTACTGTAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 72 bp CTTCATCCTCCACAGCATCTTCTCCCATTCCCCACGTaGAGCCCAGCTCATCATCTTGACCACTTCTACTGC +
Preference number: 6 (lower is better)
Translates to: LHPPQHLLPFPT*SPAHHLDHFYC
Trigger: GCAGTAGAAGTGGTCAAGATGATGAGCTGGGCTGCACGTGGGGAATGGGAGAAGATGCTGTGGAGGATGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 72 bp CAGTTCTTGGCTTTCCTTTTCCGAGATACTGCTTCCTaGCGTAGCAAGCCCAGTGTATCAAGGACCCGGCAG +
Preference number: 6 (lower is better)
Translates to: QFLAFLFRDTAS*RSKPSVSRTRQ
Trigger: CTGCCGGGTCCTTGATACACTGGGCTTGCTACGGCAGGAAGCAGTATCTCGGAAAAGGAAAGCCAAGAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 72 bp AGAAGCCTGACACCTCCATCCTCCACTCGTTCTTCATaGTCCTCCTTCACTTTCTCCTCCTCCTCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: RSLTPPSSTRSS*SSFTFSSSSSS
Trigger: GGAAGAGGAGGAGGAGGAGAAAGTGAAGGAGGAGCATGAAGAACGAGTGGAGGATGGAGGTGTCAGGCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CAA 72 bp CTGAGTGAATGGCCTCAGCCACCAGCTGTTTCCCAGTaGAATCATCTACAGGTAACCTCACCCTGCAGAGCC +
Preference number: 6 (lower is better)
Translates to: LSEWPQPPAVSQ*NHLQVTSPCRA
Trigger: GGCTCTGCAGGGTGAGGTTACCTGTAGATGATTCAACTGGGAAACAGCTGGTGGCTGAGGCCATTCACTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CAA 72 bp CAAGGACCCGGCAGGCTTCCAGCGAGCACTGTACCATaGCTTCCTTTTTCTTTCCTGAGTGAATGGCCTCAG +
Preference number: 6 (lower is better)
Translates to: QGPGRLPASTVP*LPFSFLSEWPQ
Trigger: CTGAGGCCATTCACTCAGGAAAGAAAAAGGAAGCAATGGTACAGTGCTCGCTGGAAGCCTGCCGGGTCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CAA 72 bp TTATATTCATTCGCTGGTGCATGGCTTTTAGTCTCCTaGGAGCACGAGGGCTCTGAGGGAGCACTCGGGTGC +
Preference number: 6 (lower is better)
Translates to: LYSFAGAWLLVS*EHEGSEGALGC
Trigger: GCACCCGAGTGCTCCCTCAGAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGCACCAGCGAATGAATATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201789.2
CDS TCA 72 bp TCTCCCATTCCCCACGTGCAGCCCAGCTCATCATCTTaGCCACTTCTACTGCTCTTCCCTTCAGTGGTATTT +
Preference number: 6 (lower is better)
Translates to: SPIPHVQPSSSS*PLLLLFPSVVF
Trigger: AAATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGGCTGCACGTGGGGAATGGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS TCA 72 bp CAGCGAGCACTGTACCATTGCTTCCTTTTTCTTTCCTaGGTGAATGGCCTCAGCCACCAGCTGTTTCCCAGT +
Preference number: 6 (lower is better)
Translates to: QRALYHCFLFLS*VNGLSHQLFPS
Trigger: ACTGGGAAACAGCTGGTGGCTGAGGCCATTCACTCAGGAAAGAAAAAGGAAGCAATGGTACAGTGCTCGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 72 bp TGCTGTAGTACAGCATGGTACCGAGACACGGAAGGATaGTCCAGACATATGTCACAACTAGCAAGTCTCCCG +
Preference number: 6 (lower is better)
Translates to: CCSTAWYRDTEG*SRHMSQLASLP
Trigger: CGGGAGACTTGCTAGTTGTGACATATGTCTGGAGCATCCTTCCGTGTCTCGGTACCATGCTGTACTACAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CAA 72 bp TTCTCCCATTCCCCACGTGCAGCCCAGCTCATCATCTaGACCACTTCTACTGCTCTTCCCTTCAGTGGTATT +
Preference number: 6 (lower is better)
Translates to: FSHSPRAAQLII*TTSTALPFSGI
Trigger: AATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGGCTGCACGTGGGGAATGGGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 72 bp CGGCTCATCTCTGTCTTGTTTATATTCATTCGCTGGTaGTGCATGGCTTTTAGTCTCCTTGGAGCACGAGGG +
Preference number: 6 (lower is better)
Translates to: RLISVLFIFIRW*CMAFSLLGARG
Trigger: CCCTCGTGCTCCAAGGAGACTAAAAGCCATGCAGCACCAGCGAATGAATATAAACAAGACAGAGATGAGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
CDS GCA 72 bp CGGCTCATCTCTGTCTTGTTTATATTCATTCGCTGGTaGATGGCTTTTAGTCTCCTTGGAGCACGAGGGCTC +
Preference number: 6 (lower is better)
Translates to: RLISVLFIFIRW*MAFSLLGARGL
Trigger: GAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGCACCAGCGAATGAATATAAACAAGACAGAGATGAGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201789.2
CDS TCA 72 bp GAGATGATGGCTCTGACAGAACTTTGCTTGAAGCCTTaGGCCTTTCAGAAATTTCGGCGAGTTCCCTTTCGG +
Preference number: 6 (lower is better)
Translates to: EMMALTELCLKP*AFQKFRRVPFR
Trigger: CCGAAAGGGAACTCGCCGAAATTTCTGAAAGGCTCAAGGCTTCAAGCAAAGTTCTGTCAGAGCCATCATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 72 bp CTCATCTCTGTCTTGTTTATATTCATTCGCTGGTGCTaGATGGCTTTTAGTCTCCTTGGAGCACGAGGGCTC +
Preference number: 6 (lower is better)
Translates to: LISVLFIFIRWC*MAFSLLGARGL
Trigger: GAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGCAGCACCAGCGAATGAATATAAACAAGACAGAGATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
CDS CCA 72 bp TCTCTGTCTTGTTTATATTCATTCGCTGGTGCTGCATaGCTTTTAGTCTCCTTGGAGCACGAGGGCTCTGAG +
Preference number: 6 (lower is better)
Translates to: SLSCLYSFAGAA*LLVSLEHEGSE
Trigger: CTCAGAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGCAGCACCAGCGAATGAATATAAACAAGACAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114533.9
ENSMUST00000202214.4
CDS CAA 90 bp TCTGGGTCATCCTCAGGATATTTGGAAGAAAGGATGGGTGGAAATTaGCCAGGCCCAGGAGATTTCTTTTTCTTCGGCTCATCTCTGTCT +
Preference number: 6 (lower is better)
Translates to: SGSSSGYLEERMGGN*PGPGDFFFFGSSLS
Trigger: AGACAGAGATGAGCCGAAGAAAAAGAAATCTCCTGGGCCTGGCAAATTTCCACCCATCCTTTCTTCCAAATATCCTGAGGATGACCCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000114533.9
ENSMUST00000201789.2
ENSMUST00000201925.2
ENSMUST00000202214.4
ENSMUST00000202273.4
ENSMUST00000202950.4
CDS GCA 72 bp ACGTGCAGCCCAGCTCATCATCTTGACCACTTCTACTaGTCTTCCCTTCAGTGGTATTTGCTTCTTCTTCTT +
Preference number: 6 (lower is better)
Translates to: TCSPAHHLDHFY*SSLQWYLLLLL
Trigger: AAGAAGAAGAAGCAAATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAGATGATGAGCTGGGCTGCACGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 72 bp TCCTTCTCGGTCAAAGAAGCCTTGAAGAGCCTTCTTTaGATCCTTTATATAAAACGCTTCCCGGTCCTGCTG +
Preference number: 6 (lower is better)
Translates to: SFSVKEALKSLL*ILYIKRFPVLL
Trigger: CAGCAGGACCGGGAAGCGTTTTATATAAAGGATCCAAAGAAGGCTCTTCAAGGCTTCTTTGACCGAGAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 72 bp TCATCTCTGTCTTGTTTATATTCATTCGCTGGTGCATaGCTTTTAGTCTCCTTGGAGCACGAGGGCTCTGAG +
Preference number: 6 (lower is better)
Translates to: SSLSCLYSFAGA*LLVSLEHEGSE
Trigger: CTCAGAGCCCTCGTGCTCCAAGGAGACTAAAAGCCATGCACCAGCGAATGAATATAAACAAGACAGAGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201789.2
CDS CAA 72 bp CTCCTTCTCGGTCAAAGAAGCCTTGAAGAGCCTTCTTaGGATCCTTTATATAAAACGCTTCCCGGTCCTGCT +
Preference number: 6 (lower is better)
Translates to: LLLGQRSLEEPS*DPLYKTLPGPA
Trigger: AGCAGGACCGGGAAGCGTTTTATATAAAGGATCCAAAGAAGGCTCTTCAAGGCTTCTTTGACCGAGAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 72 bp CTGGTGCTGAAGGGTCCTCACATGACGACACTATTTTaGCCATCTCTTGATAATCTTTACTCTGCTCCACTT +
Preference number: 6 (lower is better)
Translates to: LVLKGPHMTTLF*PSLDNLYSAPL
Trigger: AAGTGGAGCAGAGTAAAGATTATCAAGAGATGGGCAAAATAGTGTCGTCATGTGAGGACCCTTCAGCACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202273.4
CDS GCA 72 bp GTGCTGCTGAAGGGTCCTCACATGACGACACTATTTTaGCCATCTCTTGATAATCTTTACTCTGCTCCACTT +
Preference number: 6 (lower is better)
Translates to: VLLKGPHMTTLF*PSLDNLYSAPL
Trigger: AAGTGGAGCAGAGTAAAGATTATCAAGAGATGGGCAAAATAGTGTCGTCATGTGAGGACCCTTCAGCAGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202950.4
CDS CCA 72 bp ACTGTACCATTGCTTCCTTTTTCTTTCCTGAGTGAATaGCCTCAGCCACCAGCTGTTTCCCAGTTGAATCAT +
Preference number: 6 (lower is better)
Translates to: TVPLLPFSFLSE*PQPPAVSQLNH
Trigger: ATGATTCAACTGGGAAACAGCTGGTGGCTGAGGCCATTCACTCAGGAAAGAAAAAGGAAGCAATGGTACAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CAA 90 bp CTAACTCTTCTCCTTCTCGGTCAAAGAAGCCTTGAAGAGCCTTCTTaGGATCCTTTATATAAAACGCTTCCCGGTCCTGCTGAAAATCTA +
Preference number: 6 (lower is better)
Translates to: LTLLLLGQRSLEEPS*DPLYKTLPGPAENL
Trigger: TAGATTTTCAGCAGGACCGGGAAGCGTTTTATATAAAGGATCCAAAGAAGGCTCTTCAAGGCTTCTTTGACCGAGAAGGAGAAGAGTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CCA 72 bp CATCATCTTGACCACTTCTACTGCTCTTCCCTTCAGTaGTATTTGCTTCTTCTTCTTCATCTGAGTCTTCAC +
Preference number: 6 (lower is better)
Translates to: HHLDHFYCSSLQ*YLLLLLHLSLH
Trigger: GTGAAGACTCAGATGAAGAAGAAGAAGCAAATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAGATGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS CAA 72 bp CTTGACCACTTCTACTGCTCTTCCCTTCAGTGGTATTaGCTTCTTCTTCTTCATCTGAGTCTTCACCTAACA +
Preference number: 6 (lower is better)
Translates to: LDHFYCSSLQWY*LLLLHLSLHLT
Trigger: TGTTAGGTGAAGACTCAGATGAAGAAGAAGAAGCAAATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 72 bp GAGTCTTCACCTAACATCTTCTTCTCCAATAATATCTaGTGCTGTTTACGCAATTCCTTCAACTGTGTTACT +
Preference number: 6 (lower is better)
Translates to: ESSPNIFFSNNI*CCLRNSFNCVT
Trigger: AGTAACACAGTTGAAGGAATTGCGTAAACAGCAGCAGATATTATTGGAGAAGAAGATGTTAGGTGAAGACTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4
CDS GCA 72 bp TCTTCACCTAACATCTTCTTCTCCAATAATATCTGCTaGTGTTTACGCAATTCCTTCAACTGTGTTACTGTT +
Preference number: 6 (lower is better)
Translates to: SSPNIFFSNNIC*CLRNSFNCVTV
Trigger: AACAGTAACACAGTTGAAGGAATTGCGTAAACAGCAGCAGATATTATTGGAGAAGAAGATGTTAGGTGAAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114533.9
ENSMUST00000201858.4
ENSMUST00000202214.4
ENSMUST00000202950.4