Pregenerated sensors for SLC48A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000081534Ensembl transcript IDs: ENSMUST00000117892.2, ENSMUST00000135073.2, ENSMUST00000229084.2
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGGTCCTCACGGTCAGGGTGGTCTTGTGCAGTGAGGGGCAAGGTTaGAGACTCAGTACAGATGGAGAGCTCCCACTTGCCCCCACCAGG | + |
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Preference number: 1 (lower is better) Translates to: EVLTVRVVLCSEGQG*RLSTDGELPLAPTR Trigger: CCTGGTGGGGGCAAGTGGGAGCTCTCCATCTGTACTGAGTCTCCAACCTTGCCCCTCACTGCACAAGACCACCCTGACCGTGAGGACCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 90 bp | TTGGGAGAACGCCTCCTGGATGTTGGTGGGACATCGTCAGTGGAGTaGGTGTGCACCCAGCATCCTGTGATGGGCTGGGGAAAGGGGACA | + |
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Preference number: 1 (lower is better) Translates to: LGERLLDVGGTSSVE*VCTQHPVMGWGKGT Trigger: TGTCCCCTTTCCCCAGCCCATCACAGGATGCTGGGTGCACACCCACTCCACTGACGATGTCCCACCAACATCCAGGAGGCGTTCTCCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 90 bp | GCCCCCGATCCCAAAGCCCTTCTAAGTGCAGGGGTGTGTTTCCTGTaGTCCTCAAGTCTAGCCTCATCCGAGGAGTCCTGCTCTGGTGTG | + |
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Preference number: 1 (lower is better) Translates to: APDPKALLSAGVCFL*SSSLASSEESCSGV Trigger: CACACCAGAGCAGGACTCCTCGGATGAGGCTAGACTTGAGGACCACAGGAAACACACCCCTGCACTTAGAAGGGCTTTGGGATCGGGGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR GCA 90 bp | TCATCCGAGGAGTCCTGCTCTGGTGTGTGTGGTCATGTGTGCATATaGGACACATGGGAATGGTTGGCTGGCGCTAGCACCCTCATGGGA | + |
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Preference number: 1 (lower is better) Translates to: SSEESCSGVCGHVCI*DTWEWLAGASTLMG Trigger: TCCCATGAGGGTGCTAGCGCCAGCCAACCATTCCCATGTGTCGCATATGCACACATGACCACACACACCAGAGCAGGACTCCTCGGATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR GCA 90 bp | CCAGTAATCCTGCATGTACATCACGTGAGTCACCAAGACCCACAGTaGCAGGACACCGTGTTCCAGAAGCCAGCATGCCCGACAGCCACA | + |
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Preference number: 1 (lower is better) Translates to: PVILHVHHVSHQDPQ*QDTVFQKPACPTAT Trigger: TGTGGCTGTCGGGCATGCTGGCTTCTGGAACACGGTGTCCTGGCACTGTGGGTCTTGGTGACTCACGTGATGTACATGCAGGATTACTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135073.2 |
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| 3UTR CCA 90 bp | GTCCTCAAGTCTAGCCTCATCCGAGGAGTCCTGCTCTGGTGTGTGTaGTCATGTGTGCATATGCGACACATGGGAATGGTTGGCTGGCGC | + |
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Preference number: 1 (lower is better) Translates to: VLKSSLIRGVLLWCV*SCVHMRHMGMVGWR Trigger: GCGCCAGCCAACCATTCCCATGTGTCGCATATGCACACATGACCACACACACCAGAGCAGGACTCCTCGGATGAGGCTAGACTTGAGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 90 bp | GAAAAGGGAGATGGCCCCAGGCTGAGCCCTGCACATTGGGCCCTGTaGGATTCGGGAATAAGATCTCAGGTTCAGGTTGCTAAGACACCG | + |
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Preference number: 1 (lower is better) Translates to: EKGDGPRLSPAHWAL*DSGIRSQVQVAKTP Trigger: CGGTGTCTTAGCAACCTGAACCTGAGATCTTATTCCCGAATCCCACAGGGCCCAATGTGCAGGGCTCAGCCTGGGGCCATCTCCCTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 90 bp | AACCCAGGTGAAAAGGGAGATGGCCCCAGGCTGAGCCCTGCACATTaGGCCCTGTGGGATTCGGGAATAAGATCTCAGGTTCAGGTTGCT | + |
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Preference number: 1 (lower is better) Translates to: NPGEKGDGPRLSPAH*ALWDSGIRSQVQVA Trigger: AGCAACCTGAACCTGAGATCTTATTCCCGAATCCCACAGGGCCCAATGTGCAGGGCTCAGCCTGGGGCCATCTCCCTTTTCACCTGGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR TCA 90 bp | ACATGCAGGAAGAAACCACTCCAAATACATGCTCACCAACCCAGGTaGAAAGGGAGATGGCCCCAGGCTGAGCCCTGCACATTGGGCCCT | + |
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Preference number: 1 (lower is better) Translates to: TCRKKPLQIHAHQPR*KGRWPQAEPCTLGP Trigger: AGGGCCCAATGTGCAGGGCTCAGCCTGGGGCCATCTCCCTTTTCACCTGGGTTGGTGAGCATGTATTTGGAGTGGTTTCTTCCTGCATGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR GCA 90 bp | ATTCCCTTTCCCATCTACCTTGGCTTAGGGTGGGGAGATGGAATCTaGAGGGATGTTGAGTCTGTGGGCATCCTAACCCTGGCTGGGACA | + |
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Preference number: 1 (lower is better) Translates to: IPFPIYLGLGWGDGI*RDVESVGILTLAGT Trigger: TGTCCCAGCCAGGGTTAGGATGCCCACAGACTCAACATCCCTGCAGATTCCATCTCCCCACCCTAAGCCAAGGTAGATGGGAAAGGGAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 90 bp | GAGTCCTGCTCTGGTGTGTGTGGTCATGTGTGCATATGCGACACATaGGAATGGTTGGCTGGCGCTAGCACCCTCATGGGAAACAAACTC | + |
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Preference number: 1 (lower is better) Translates to: ESCSGVCGHVCICDT*EWLAGASTLMGNKL Trigger: GAGTTTGTTTCCCATGAGGGTGCTAGCGCCAGCCAACCATTCCCATGTGTCGCATATGCACACATGACCACACACACCAGAGCAGGACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR TCA 90 bp | CCTGTCCCAGCCCCTGTCACTAGCCATAGTTCCAATCCTACCCATTaGATTCATTGTCGTGGCCCTACTTACAGAGATCCCTCAGAGGGC | + |
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Preference number: 1 (lower is better) Translates to: PVPAPVTSHSSNPTH*IHCRGPTYRDPSEG Trigger: GCCCTCTGAGGGATCTCTGTAAGTAGGGCCACGACAATGAATTCAATGGGTAGGATTGGAACTATGGCTAGTGACAGGGGCTGGGACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
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| 3UTR GCA 90 bp | GTGTGTTTCCTGTGGTCCTCAAGTCTAGCCTCATCCGAGGAGTCCTaGTCTGGTGTGTGTGGTCATGTGTGCATATGCGACACATGGGAA | + |
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Preference number: 1 (lower is better) Translates to: VCFLWSSSLASSEES*SGVCGHVCICDTWE Trigger: TTCCCATGTGTCGCATATGCACACATGACCACACACACCAGAGCAGGACTCCTCGGATGAGGCTAGACTTGAGGACCACAGGAAACACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 90 bp | CTGGTGTGTGTGGTCATGTGTGCATATGCGACACATGGGAATGGTTaGCTGGCGCTAGCACCCTCATGGGAAACAAACTCTGGATGGGAA | + |
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Preference number: 1 (lower is better) Translates to: LVCVVMCAYATHGNG*LALAPSWETNSGWE Trigger: TTCCCATCCAGAGTTTGTTTCCCATGAGGGTGCTAGCGCCAGCCAACCATTCCCATGTGTCGCATATGCACACATGACCACACACACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 90 bp | TGCTCTGGTGTGTGTGGTCATGTGTGCATATGCGACACATGGGAATaGTTGGCTGGCGCTAGCACCCTCATGGGAAACAAACTCTGGATG | + |
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Preference number: 1 (lower is better) Translates to: CSGVCGHVCICDTWE*LAGASTLMGNKLWM Trigger: CATCCAGAGTTTGTTTCCCATGAGGGTGCTAGCGCCAGCCAACCATTCCCATGTGTCGCATATGCACACATGACCACACACACCAGAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 90 bp | TTTCCTGTGGTCCTCAAGTCTAGCCTCATCCGAGGAGTCCTGCTCTaGTGTGTGTGGTCATGTGTGCATATGCGACACATGGGAATGGTT | + |
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Preference number: 1 (lower is better) Translates to: FPVVLKSSLIRGVLL*CVWSCVHMRHMGMV Trigger: AACCATTCCCATGTGTCGCATATGCACACATGACCACACACACCAGAGCAGGACTCCTCGGATGAGGCTAGACTTGAGGACCACAGGAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 90 bp | CTGTATTTCTGCTTAAGTGCCCATAACACAGGTAAGGCAGAGAGCTaGGGGCAGTGCCCAAGTGGAAGAGTAGACGTGCAAAGTGACAAC | + |
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Preference number: 1 (lower is better) Translates to: LYFCLSAHNTGKAES*GQCPSGRVDVQSDN Trigger: GTTGTCACTTTGCACGTCTACTCTTCCACTTGGGCACTGCCCCCAGCTCTCTGCCTTACCTGTGTTATGGGCACTTAAGCAGAAATACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 90 bp | TTTGGCTACCCGACACTTCAGGGTAACAGGGTGGGGAACAGGGGATaGAGATCTGTACTAAAGATTCCTCTCTTGACCAGACCTTTGATG | + |
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Preference number: 1 (lower is better) Translates to: FGYPTLQGNRVGNRG*RSVLKIPLLTRPLM Trigger: CATCAAAGGTCTGGTCAAGAGAGGAATCTTTAGTACAGATCTCCATCCCCTGTTCCCCACCCTGTTACCCTGAAGTGTCGGGTAGCCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
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| 3UTR GCA 90 bp | TACCAGCAGAAGGCTCTAGAAGTGACACTGTTCCTTATCCTTCCCTaGTCTAAAGTCCCATGGTGTTTTTACACTGTAAAGGCCAGGGTG | + |
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Preference number: 1 (lower is better) Translates to: YQQKALEVTLFLILP*SKVPWCFYTVKARV Trigger: CACCCTGGCCTTTACAGTGTAAAAACACCATGGGACTTTAGAGCAGGGAAGGATAAGGAACAGTGTCACTTCTAGAGCCTTCTGCTGGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CAA 90 bp | GTTAGGATCTGGTGCAGGGAGGAGGTCCTCACGGTCAGGGTGGTCTaGTGCAGTGAGGGGCAAGGTTGGAGACTCAGTACAGATGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: VRIWCREEVLTVRVV*CSEGQGWRLSTDGE Trigger: CTCTCCATCTGTACTGAGTCTCCAACCTTGCCCCTCACTGCACAAGACCACCCTGACCGTGAGGACCTCCTCCCTGCACCAGATCCTAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR-3UTR TCA 90 bp | TCACCAAGACCCACAGTGCCAGGACACCGTGTTCCAGAAGCCAGCATGCCCGACCTAGGATGGACCCTGTaGCTCAGCAATTTCTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: SPRPTVPGHRVPEASMPDLGWTL*LSNFWA Trigger: AGCCCAGAAATTGCTGAGTCACAGGGTCCATCCTAG...GTCGGGCATGCTGGCTTCTGGAACACGGTGTCCTGGCACTGTGGGTCTTGGTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135073.2 |
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| 3UTR-3UTR CCA 90 bp | CCACACACAGCTTCAATGAAGTCTGGGGTAGCAAGGAAGCCTGTCCCAGCCCCTACTCTGCCATGGTTCTaGAGTTCCCCAGGGGTTGGG | + |
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Preference number: 2 (lower is better) Translates to: PHTASMKSGVARKPVPAPTLPWF*SSPGVG Trigger: CCCAACCCCTGGGGAACTCCAGAACCATGGCAGAGT...AGGGGCTGGGACAGGCTTCCTTGCTACCCCAGACTTCATTGAAGCTGTGTGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
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| 3UTR CAA 90 bp | AGAAGAGTAGCAGCCCCTGCCCTCCCTCTCCGCTTAGGTAAGGCCTaGGGCCCATGTCCACTCAGAAGAGTTCCTTCAGGAGAGAGAGAA | + |
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Preference number: 2 (lower is better) Translates to: RRVAAPALPLRLGKA*GPCPLRRVPSGERE Trigger: TTCTCTCTCTCCTGAAGGAACTCTTCTGAGTGGACATGGGCCCAAGGCCTTACCTAAGCGGAGAGGGAGGGCAGGGGCTGCTACTCTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR-3UTR GCA 90 bp | CCCCGATCCCAAAGCCCTTCTAAGTGCAGGGGTGTGTTTCCTGTGGTCCTCAAGCGGGCCCATATACTCTaGCATGGTTCTGGAGTTCCC | + |
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Preference number: 2 (lower is better) Translates to: PRSQSPSKCRGVFPVVLKRAHIL*HGSGVP Trigger: GGGAACTCCAGAACCATGGCAGAGTATATGGGCCCG...CTTGAGGACCACAGGAAACACACCCCTGCACTTAGAAGGGCTTTGGGATCGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR-3UTR GCA 90 bp | CCCCGATCCCAAAGCCCTTCTAAGTGCAGGGGTGTGTTTCCTGTGGTCCTCAAGTGGAAAGGTCTAAGCTaGCCTCTAGCTGGGCTAACG | + |
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Preference number: 2 (lower is better) Translates to: PRSQSPSKCRGVFPVVLKWKGLS*PLAGLT Trigger: CGTTAGCCCAGCTAGAGGGCAGCTTAGACCTTTCCA...CTTGAGGACCACAGGAAACACACCCCTGCACTTAGAAGGGCTTTGGGATCGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CAA 90 bp | TCTGGTGTGTGTGGTCATGTGTGCATATGCGACACATGGGAATGGTaGGCTGGCGCTAGCACCCTCATGGGAAACAAACTCTGGATGGGA | + |
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Preference number: 2 (lower is better) Translates to: SGVCGHVCICDTWEW*AGASTLMGNKLWMG Trigger: TCCCATCCAGAGTTTGTTTCCCATGAGGGTGCTAGCGCCAGCCAACCATTCCCATGTGTCGCATATGCACACATGACCACACACACCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR-3UTR GCA 90 bp | GAAAATAGATCTATTTGGAAAGGTCTAAGCTGCCCTCTAGCTGGGCTAACGGGCCGGGCCCATATACTCTaGCATGGTTCTGGAGTTCCC | + |
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Preference number: 2 (lower is better) Translates to: ENRSIWKGLSCPLAGLTGRAHIL*HGSGVP Trigger: GGGAACTCCAGAACCATGGCAGAGTATATGGGCCCG...GCCCGTTAGCCCAGCTAGAGGGCAGCTTAGACCTTTCCAAATAGATCTATTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
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| 3UTR-3UTR CCA 90 bp | GTTCCAATCCTACCCATTGAATTCATTGTCGTGGCCCTACTTACAGAGATCCCTACTCTGCCATGGTTCTaGAGTTCCCCAGGGGTTGGG | + |
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Preference number: 2 (lower is better) Translates to: VPILPIEFIVVALLTEIPTLPWF*SSPGVG Trigger: CCCAACCCCTGGGGAACTCCAGAACCATGGCAGAGT...AGGGATCTCTGTAAGTAGGGCCACGACAATGAATTCAATGGGTAGGATTGGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
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| 3UTR-3UTR GCA 90 bp | CTAGAAGTGACACTGTTCCTTATCCTTCCCTGCTCTAAAGTCCCATGGTGTTTTGAGAGCTGGGGGCAGTaGCCAAGTGGAAGAGTAGAC | + |
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Preference number: 2 (lower is better) Translates to: LEVTLFLILPCSKVPWCFESWGQ*PSGRVD Trigger: GTCTACTCTTCCACTTGGGCACTGCCCCCAGCTCTC...AAAACACCATGGGACTTTAGAGCAGGGAAGGATAAGGAACAGTGTCACTTCTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR-3UTR CCA 90 bp | GGATGGAGATCTGTACTAAAGATTCCTCTCTTGACCAGACCTTTGATGCCTCCCCCATATACTCTGCCATaGTTCTGGAGTTCCCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: GWRSVLKIPLLTRPLMPPPYTLP*FWSSPG Trigger: CCCTGGGGAACTCCAGAACCATGGCAGAGTATATGG...GGGAGGCATCAAAGGTCTGGTCAAGAGAGGAATCTTTAGTACAGATCTCCATCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
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| 3UTR-3UTR GCA 90 bp | GCCATAGTTCCAATCCTACCCATTGAATTCATTGTCGTGGCCCTACTTACAGAGTGGAAAGGTCTAAGCTaGCCTCTAGCTGGGCTAACG | + |
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Preference number: 2 (lower is better) Translates to: AIVPILPIEFIVVALLTEWKGLS*PLAGLT Trigger: CGTTAGCCCAGCTAGAGGGCAGCTTAGACCTTTCCA...CTCTGTAAGTAGGGCCACGACAATGAATTCAATGGGTAGGATTGGAACTATGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
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| 3UTR CAA 90 bp | GACAAGTCTGGACCTAACTCAGACCCTCTAGTCCCTTGTCCTTCCTaGGCTAATACATGCAGGAAGAAACCACTCCAAATACATGCTCAC | + |
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Preference number: 2 (lower is better) Translates to: DKSGPNSDPLVPCPS*ANTCRKKPLQIHAH Trigger: GTGAGCATGTATTTGGAGTGGTTTCTTCCTGCATGTATTAGCCAAGGAAGGACAAGGGACTAGAGGGTCTGAGTTAGGTCCAGACTTGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR-3UTR GCA 90 bp | TACCAGCAGAAGGCTCTAGAAGTGACACTGTTCCTTATCCTTCCCTGCTCTAAACAAAGCCCTTCTAAGTaGAGGGGTGTGTTTCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: YQQKALEVTLFLILPCSKQSPSK*RGVFPV Trigger: CACAGGAAACACACCCCTGCACTTAGAAGGGCTTTG...TTTAGAGCAGGGAAGGATAAGGAACAGTGTCACTTCTAGAGCCTTCTGCTGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR-3UTR CCA 90 bp | CTAGAAGTGACACTGTTCCTTATCCTTCCCTGCTCTAAAGTCCCATGGTGTTTTCCATATACTCTGCCATaGTTCTGGAGTTCCCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: LEVTLFLILPCSKVPWCFPYTLP*FWSSPG Trigger: CCCTGGGGAACTCCAGAACCATGGCAGAGTATATGG...AAAACACCATGGGACTTTAGAGCAGGGAAGGATAAGGAACAGTGTCACTTCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR-3UTR CCA 90 bp | CCCCTGTCACTAGCCATAGTTCCAATCCTACCCATTGAATTCATTGTCGTGGCCGAAAATAGATCTATTTaGAAAGGTCTAAGCTGCCCT | + |
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Preference number: 2 (lower is better) Translates to: PLSLAIVPILPIEFIVVAENRSI*KGLSCP Trigger: AGGGCAGCTTAGACCTTTCCAAATAGATCTATTTTC...GGCCACGACAATGAATTCAATGGGTAGGATTGGAACTATGGCTAGTGACAGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
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| 3UTR-3UTR CAA 90 bp | ACCAACCCAGGTGAAAAGGGAGATGGCCCCAGGCTGAGCCCTGCACATTGGGCCGCTAGAGCCCCCATCTaGCCCACTCTTGTCCCCTCT | + |
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Preference number: 3 (lower is better) Translates to: TNPGEKGDGPRLSPAHWAARAPI*PTLVPS Trigger: AGAGGGGACAAGAGTGGGCAAGATGGGGGCTCTAGC...GGCCCAATGTGCAGGGCTCAGCCTGGGGCCATCTCCCTTTTCACCTGGGTTGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 72 bp | CGCCTCCTGGATGTTGGTGGGACATCGTCAGTGGAGTaGGTGTGCACCCAGCATCCTGTGATGGGCTGGGGA | + |
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Preference number: 3 (lower is better) Translates to: RLLDVGGTSSVE*VCTQHPVMGWG Trigger: TCCCCAGCCCATCACAGGATGCTGGGTGCACACCCACTCCACTGACGATGTCCCACCAACATCCAGGAGGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR TCA 72 bp | TCACCAACCCAGGTGAAAAGGGAGATGGCCCCAGGCTaGGCCCTGCACATTGGGCCCTGTGGGATTCGGGAA | + |
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Preference number: 3 (lower is better) Translates to: SPTQVKREMAPG*ALHIGPCGIRE Trigger: TTCCCGAATCCCACAGGGCCCAATGTGCAGGGCTCAGCCTGGGGCCATCTCCCTTTTCACCTGGGTTGGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR GCA 72 bp | CTGGATGTTGGTGGGACATCGTCAGTGGAGTGGGTGTaGACCCAGCATCCTGTGATGGGCTGGGGAAAGGGG | + |
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Preference number: 3 (lower is better) Translates to: LDVGGTSSVEWV*TQHPVMGWGKG Trigger: CCCCTTTCCCCAGCCCATCACAGGATGCTGGGTGCACACCCACTCCACTGACGATGTCCCACCAACATCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 72 bp | GGATCTGGTGCAGGGAGGAGGTCCTCACGGTCAGGGTaGTCTTGTGCAGTGAGGGGCAAGGTTGGAGACTCA | + |
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Preference number: 3 (lower is better) Translates to: GSGAGRRSSRSG*SCAVRGKVGDS Trigger: TGAGTCTCCAACCTTGCCCCTCACTGCACAAGACCACCCTGACCGTGAGGACCTCCTCCCTGCACCAGATCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR GCA 72 bp | AGGTTGGAGACTCAGTACAGATGGAGAGCTCCCACTTaGCCCCACCAGGTTGCCCCCGATCCCAAAGCCCTT | + |
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Preference number: 3 (lower is better) Translates to: RLETQYRWRAPT*PHQVAPDPKAL Trigger: AAGGGCTTTGGGATCGGGGGCAACCTGGTGGGGGCAAGTGGGAGCTCTCCATCTGTACTGAGTCTCCAACCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR CCA 72 bp | GTGGAGTGGGTGTGCACCCAGCATCCTGTGATGGGCTaGGGAAAGGGGACAAGTCTGGACCTAACTCAGACC | + |
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Preference number: 3 (lower is better) Translates to: VEWVCTQHPVMG*GKGTSLDLTQT Trigger: GGTCTGAGTTAGGTCCAGACTTGTCCCCTTTCCCCAGCCCATCACAGGATGCTGGGTGCACACCCACTCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR TCA 72 bp | GGAGGAGGTCCTCACGGTCAGGGTGGTCTTGTGCAGTaGGGGGCAAGGTTGGAGACTCAGTACAGATGGAGA | + |
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Preference number: 3 (lower is better) Translates to: GGGPHGQGGLVQ*GARLETQYRWR Trigger: TCTCCATCTGTACTGAGTCTCCAACCTTGCCCCTCACTGCACAAGACCACCCTGACCGTGAGGACCTCCTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR TCA 72 bp | CGTGTTCCAGAAGCCAGCATGCCCGACAGCCACAGTTaGCCAACACGGGCAAAACCCACTAGGATGGACCCT | + |
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Preference number: 3 (lower is better) Translates to: RVPEASMPDSHS*PTRAKPTRMDP Trigger: AGGGTCCATCCTAGTGGGTTTTGCCCGTGTTGGTCAACTGTGGCTGTCGGGCATGCTGGCTTCTGGAACACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135073.2 |
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| 3UTR GCA 72 bp | CCACCAGGTTGCCCCCGATCCCAAAGCCCTTCTAAGTaGAGGGGTGTGTTTCCTGTGGTCCTCAAGTCTAGC | + |
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Preference number: 3 (lower is better) Translates to: PPGCPRSQSPSK*RGVFPVVLKSS Trigger: GCTAGACTTGAGGACCACAGGAAACACACCCCTGCACTTAGAAGGGCTTTGGGATCGGGGGCAACCTGGTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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| 3UTR GCA 72 bp | CTGCATGTACATCACGTGAGTCACCAAGACCCACAGTaGCAGGACACCGTGTTCCAGAAGCCAGCATGCCCG | + |
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Preference number: 3 (lower is better) Translates to: LHVHHVSHQDPQ*QDTVFQKPACP Trigger: CGGGCATGCTGGCTTCTGGAACACGGTGTCCTGGCACTGTGGGTCTTGGTGACTCACGTGATGTACATGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135073.2 |
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| 3UTR CCA 72 bp | CTGGCGCTAGCACCCTCATGGGAAACAAACTCTGGATaGGAAGGTAGGACGGACGGACGCTGGATTCTGTCC | + |
|
Preference number: 3 (lower is better) Translates to: LALAPSWETNSG*EGRTDGRWILS Trigger: GGACAGAATCCAGCGTCCGTCCGTCCTACCTTCCCATCCAGAGTTTGTTTCCCATGAGGGTGCTAGCGCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | ACGGTCAGGGTGGTCTTGTGCAGTGAGGGGCAAGGTTaGAGACTCAGTACAGATGGAGAGCTCCCACTTGCC | + |
|
Preference number: 3 (lower is better) Translates to: TVRVVLCSEGQG*RLSTDGELPLA Trigger: GGCAAGTGGGAGCTCTCCATCTGTACTGAGTCTCCAACCTTGCCCCTCACTGCACAAGACCACCCTGACCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | GATGGCCCCAGGCTGAGCCCTGCACATTGGGCCCTGTaGGATTCGGGAATAAGATCTCAGGTTCAGGTTGCT | + |
|
Preference number: 3 (lower is better) Translates to: DGPRLSPAHWAL*DSGIRSQVQVA Trigger: AGCAACCTGAACCTGAGATCTTATTCCCGAATCCCACAGGGCCCAATGTGCAGGGCTCAGCCTGGGGCCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR TCA 72 bp | TGGCTTAGGGTGGGGAGATGGAATCTGCAGGGATGTTaGGTCTGTGGGCATCCTAACCCTGGCTGGGACAGA | + |
|
Preference number: 3 (lower is better) Translates to: WLRVGRWNLQGC*VCGHPNPGWDR Trigger: TCTGTCCCAGCCAGGGTTAGGATGCCCACAGACTCAACATCCCTGCAGATTCCATCTCCCCACCCTAAGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR GCA 72 bp | GAGTCCTGCTCTGGTGTGTGTGGTCATGTGTGCATATaGGACACATGGGAATGGTTGGCTGGCGCTAGCACC | + |
|
Preference number: 3 (lower is better) Translates to: ESCSGVCGHVCI*DTWEWLAGAST Trigger: GGTGCTAGCGCCAGCCAACCATTCCCATGTGTCGCATATGCACACATGACCACACACACCAGAGCAGGACTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | TTTGATGCCTCCCCCACACACAGCTTCAATGAAGTCTaGGGTAGCAAGGAAGCCTGTCCCAGCCCCTGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: FDASPTHSFNEV*GSKEACPSPCH Trigger: GTGACAGGGGCTGGGACAGGCTTCCTTGCTACCCCAGACTTCATTGAAGCTGTGTGTGGGGGAGGCATCAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
||
| 3UTR CCA 72 bp | CCCAAAGCCCTTCTAAGTGCAGGGGTGTGTTTCCTGTaGTCCTCAAGTCTAGCCTCATCCGAGGAGTCCTGC | + |
|
Preference number: 3 (lower is better) Translates to: PKALLSAGVCFL*SSSLASSEESC Trigger: GCAGGACTCCTCGGATGAGGCTAGACTTGAGGACCACAGGAAACACACCCCTGCACTTAGAAGGGCTTTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | GAAAAGGGAGATGGCCCCAGGCTGAGCCCTGCACATTaGGCCCTGTGGGATTCGGGAATAAGATCTCAGGTT | + |
|
Preference number: 3 (lower is better) Translates to: EKGDGPRLSPAH*ALWDSGIRSQV Trigger: AACCTGAGATCTTATTCCCGAATCCCACAGGGCCCAATGTGCAGGGCTCAGCCTGGGGCCATCTCCCTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR-3UTR CAA 90 bp | ACCAACCCAGGTGAAAAGGGAGATGGCCCCAGGCTGAGCCCTGCACATTGGGCCCTAAAGATTCCTCTCTaGACCAGACCTTTGATGCCT | + |
|
Preference number: 3 (lower is better) Translates to: TNPGEKGDGPRLSPAHWALKIPL*TRPLMP Trigger: AGGCATCAAAGGTCTGGTCAAGAGAGGAATCTTTAG...GGCCCAATGTGCAGGGCTCAGCCTGGGGCCATCTCCCTTTTCACCTGGGTTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR GCA 72 bp | CCCATCTACCTTGGCTTAGGGTGGGGAGATGGAATCTaGAGGGATGTTGAGTCTGTGGGCATCCTAACCCTG | + |
|
Preference number: 3 (lower is better) Translates to: PIYLGLGWGDGI*RDVESVGILTL Trigger: CAGGGTTAGGATGCCCACAGACTCAACATCCCTGCAGATTCCATCTCCCCACCCTAAGCCAAGGTAGATGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | ACACATGGGAATGGTTGGCTGGCGCTAGCACCCTCATaGGAAACAAACTCTGGATGGGAAGGTAGGACGGAC | + |
|
Preference number: 3 (lower is better) Translates to: THGNGWLALAPS*ETNSGWEGRTD Trigger: GTCCGTCCTACCTTCCCATCCAGAGTTTGTTTCCCATGAGGGTGCTAGCGCCAGCCAACCATTCCCATGTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | TCTGGTGTGTGTGGTCATGTGTGCATATGCGACACATaGGAATGGTTGGCTGGCGCTAGCACCCTCATGGGA | + |
|
Preference number: 3 (lower is better) Translates to: SGVCGHVCICDT*EWLAGASTLMG Trigger: TCCCATGAGGGTGCTAGCGCCAGCCAACCATTCCCATGTGTCGCATATGCACACATGACCACACACACCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | GGACAGAACTGGGAGAGCAAAGGAGATCTCAGCTGGTaGTCTCCCCATAGGGGACCAGAGATGAGGAATACC | + |
|
Preference number: 3 (lower is better) Translates to: GQNWESKGDLSW*SPHRGPEMRNT Trigger: GGTATTCCTCATCTCTGGTCCCCTATGGGGAGACCACCAGCTGAGATCTCCTTTGCTCTCCCAGTTCTGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | TTTAAAGTCCTTGGGAGAACGCCTCCTGGATGTTGGTaGGACATCGTCAGTGGAGTGGGTGTGCACCCAGCA | + |
|
Preference number: 3 (lower is better) Translates to: FKVLGRTPPGCW*DIVSGVGVHPA Trigger: TGCTGGGTGCACACCCACTCCACTGACGATGTCCCACCAACATCCAGGAGGCGTTCTCCCAAGGACTTTAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | GTCCTCAAGTCTAGCCTCATCCGAGGAGTCCTGCTCTaGTGTGTGTGGTCATGTGTGCATATGCGACACATG | + |
|
Preference number: 3 (lower is better) Translates to: VLKSSLIRGVLL*CVWSCVHMRHM Trigger: CATGTGTCGCATATGCACACATGACCACACACACCAGAGCAGGACTCCTCGGATGAGGCTAGACTTGAGGAC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR GCA 72 bp | GACAAGTGTACCCAGCGTGAGAGAGGTGCTAGCTCCTaGCTTTCTGCTTCTGAATCCACACATCCTGGTCAA | + |
|
Preference number: 3 (lower is better) Translates to: DKCTQRERGASS*LSASESTHPGQ Trigger: TTGACCAGGATGTGTGGATTCAGAAGCAGAAAGGCAGGAGCTAGCACCTCTCTCACGCTGGGTACACTTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | GTGGTCATGTGTGCATATGCGACACATGGGAATGGTTaGCTGGCGCTAGCACCCTCATGGGAAACAAACTCT | + |
|
Preference number: 3 (lower is better) Translates to: VVMCAYATHGNG*LALAPSWETNS Trigger: AGAGTTTGTTTCCCATGAGGGTGCTAGCGCCAGCCAACCATTCCCATGTGTCGCATATGCACACATGACCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | GTGTGTGGTCATGTGTGCATATGCGACACATGGGAATaGTTGGCTGGCGCTAGCACCCTCATGGGAAACAAA | + |
|
Preference number: 3 (lower is better) Translates to: VCGHVCICDTWE*LAGASTLMGNK Trigger: TTTGTTTCCCATGAGGGTGCTAGCGCCAGCCAACCATTCCCATGTGTCGCATATGCACACATGACCACACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | CCGACACTTCAGGGTAACAGGGTGGGGAACAGGGGATaGAGATCTGTACTAAAGATTCCTCTCTTGACCAGA | + |
|
Preference number: 3 (lower is better) Translates to: PTLQGNRVGNRG*RSVLKIPLLTR Trigger: TCTGGTCAAGAGAGGAATCTTTAGTACAGATCTCCATCCCCTGTTCCCCACCCTGTTACCCTGAAGTGTCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
||
| 3UTR CCA 72 bp | AGAAAGATTCCCTTTCCCATCTACCTTGGCTTAGGGTaGGGAGATGGAATCTGCAGGGATGTTGAGTCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: RKIPFPIYLGLG*GDGICRDVESV Trigger: CACAGACTCAACATCCCTGCAGATTCCATCTCCCCACCCTAAGCCAAGGTAGATGGGAAAGGGAATCTTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR GCA 72 bp | GACCCTCTAGTCCCTTGTCCTTCCTTGGCTAATACATaGAGGAAGAAACCACTCCAAATACATGCTCACCAA | + |
|
Preference number: 3 (lower is better) Translates to: DPLVPCPSLANT*RKKPLQIHAHQ Trigger: TTGGTGAGCATGTATTTGGAGTGGTTTCTTCCTGCATGTATTAGCCAAGGAAGGACAAGGGACTAGAGGGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CCA 72 bp | ACACTGTTCCTTATCCTTCCCTGCTCTAAAGTCCCATaGTGTTTTTACACTGTAAAGGCCAGGGTGAGGCAA | + |
|
Preference number: 3 (lower is better) Translates to: TLFLILPCSKVP*CFYTVKARVRQ Trigger: TTGCCTCACCCTGGCCTTTACAGTGTAAAAACACCATGGGACTTTAGAGCAGGGAAGGATAAGGAACAGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR GCA 72 bp | AAGGCTCTAGAAGTGACACTGTTCCTTATCCTTCCCTaGTCTAAAGTCCCATGGTGTTTTTACACTGTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: KALEVTLFLILP*SKVPWCFYTVK Trigger: CTTTACAGTGTAAAAACACCATGGGACTTTAGAGCAGGGAAGGATAAGGAACAGTGTCACTTCTAGAGCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| CDS-3UTR TCA 90 bp | CCAACACGGGCAAAACCCACTAGGATGGACCCTGTGACTCAGCAATTTCTGGGCAGCCGGCTACCGAGCTaGAGCCGGAGTAGGCGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: PTRAKPTRMDPVTQQFLGSRLPS*SRSRRR Trigger: GCGCCGCCTACTCCGGCTTCAGCTCGGTAGCCGGCT...GCCCAGAAATTGCTGAGTCACAGGGTCCATCCTAGTGGGTTTTGCCCGTGTTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135073.2 |
||
| 3UTR CAA 72 bp | GCAGCCCCTGCCCTCCCTCTCCGCTTAGGTAAGGCCTaGGGCCCATGTCCACTCAGAAGAGTTCCTTCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: AAPALPLRLGKA*GPCPLRRVPSG Trigger: TCCTGAAGGAACTCTTCTGAGTGGACATGGGCCCAAGGCCTTACCTAAGCGGAGAGGGAGGGCAGGGGCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CAA 72 bp | AAGGTTGGAGACTCAGTACAGATGGAGAGCTCCCACTaGCCCCCACCAGGTTGCCCCCGATCCCAAAGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: KVGDSVQMESSH*PPPGCPRSQSP Trigger: AGGGCTTTGGGATCGGGGGCAACCTGGTGGGGGCAAGTGGGAGCTCTCCATCTGTACTGAGTCTCCAACCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CAA 72 bp | TGGTGCAGGGAGGAGGTCCTCACGGTCAGGGTGGTCTaGTGCAGTGAGGGGCAAGGTTGGAGACTCAGTACA | + |
|
Preference number: 4 (lower is better) Translates to: WCREEVLTVRVV*CSEGQGWRLST Trigger: TGTACTGAGTCTCCAACCTTGCCCCTCACTGCACAAGACCACCCTGACCGTGAGGACCTCCTCCCTGCACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| CDS-3UTR TCA 90 bp | GCTTCTGAATCCACACATCCTGGTCAACTTGGAGCCCCAAGTAGTCTGGCTGGGAGCCGCGCAGCCCTCTaGGCCAGGTCCTCCAGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: ASESTHPGQLGAPSSLAGSRAAL*ARSSSN Trigger: ATTACTGGAGGACCTGGCTCAGAGGGCTGCGCGGCT...CCCAGCCAGACTACTTGGGGCTCCAAGTTGACCAGGATGTGTGGATTCAGAAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| CDS-3UTR TCA 90 bp | GAAAATAGATCTATTTGGAAAGGTCTAAGCTGCCCTCTAGCTGGGCTAACGGGCAGCCGGCTACCGAGCTaGAGCCGGAGTAGGCGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: ENRSIWKGLSCPLAGLTGSRLPS*SRSRRR Trigger: GCGCCGCCTACTCCGGCTTCAGCTCGGTAGCCGGCT...GCCCGTTAGCCCAGCTAGAGGGCAGCTTAGACCTTTCCAAATAGATCTATTTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
||
| CDS-3UTR TCA 90 bp | ATAGTTCCAATCCTACCCATTGAATTCATTGTCGTGGCCCTACTTACAGAGATCAGCCGGCTACCGAGCTaGAGCCGGAGTAGGCGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: IVPILPIEFIVVALLTEISRLPS*SRSRRR Trigger: GCGCCGCCTACTCCGGCTTCAGCTCGGTAGCCGGCT...GATCTCTGTAAGTAGGGCCACGACAATGAATTCAATGGGTAGGATTGGAACTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
||
| CDS-3UTR CCA 90 bp | TACCCGACACTTCAGGGTAACAGGGTGGGGAACAGGGGATGGAGATCTGTACTATCCAGACGAAGAAGATaGAGAAGCCGGCTACCGAGC | + |
|
Preference number: 4 (lower is better) Translates to: YPTLQGNRVGNRGWRSVLSRRRR*RSRLPS Trigger: GCTCGGTAGCCGGCTTCTCCATCTTCTTCGTCTGGA...TAGTACAGATCTCCATCCCCTGTTCCCCACCCTGTTACCCTGAAGTGTCGGGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
||
| CDS-3UTR CCA 90 bp | TCCAGTAATCCTGCATGTACATCACGTGAGTCACCAAGACCCACAGTGCCAGGATCCAGACGAAGAAGATaGAGAAGCCGGCTACCGAGC | + |
|
Preference number: 4 (lower is better) Translates to: SSNPACTSRESPRPTVPGSRRRR*RSRLPS Trigger: GCTCGGTAGCCGGCTTCTCCATCTTCTTCGTCTGGA...TCCTGGCACTGTGGGTCTTGGTGACTCACGTGATGTACATGCAGGATTACTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135073.2 |
||
| 3UTR CAA 72 bp | TGTGGTCATGTGTGCATATGCGACACATGGGAATGGTaGGCTGGCGCTAGCACCCTCATGGGAAACAAACTC | + |
|
Preference number: 4 (lower is better) Translates to: CGHVCICDTWEW*AGASTLMGNKL Trigger: GAGTTTGTTTCCCATGAGGGTGCTAGCGCCAGCCAACCATTCCCATGTGTCGCATATGCACACATGACCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| CDS-3UTR CCA 90 bp | GTACTAAAGATTCCTCTCTTGACCAGACCTTTGATGCCTCCCCCACACACAGCTTCCAGACGAAGAAGATaGAGAAGCCGGCTACCGAGC | + |
|
Preference number: 4 (lower is better) Translates to: VLKIPLLTRPLMPPPHTASRRRR*RSRLPS Trigger: GCTCGGTAGCCGGCTTCTCCATCTTCTTCGTCTGGA...AGCTGTGTGTGGGGGAGGCATCAAAGGTCTGGTCAAGAGAGGAATCTTTAGTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
||
| CDS-3UTR GCA 90 bp | GTTCCAATCCTACCCATTGAATTCATTGTCGTGGCCCTACTTACAGAGATCCCTCTGGGTGATGGCCAATaGCAGGAAGGTGCAGAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: VPILPIEFIVVALLTEIPLGDGQ*QEGAEG Trigger: GCCTTCTGCACCTTCCTGGCATTGGCCATCACCCAG...AGGGATCTCTGTAAGTAGGGCCACGACAATGAATTCAATGGGTAGGATTGGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| CDS-3UTR TCA 90 bp | GAATTCATTGTCGTGGCCCTACTTACAGAGATCCCTCAGAGGGCTAAGAAAATAGACTCTGATGCTGGGTaGTGGCCAATGCCAGGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: EFIVVALLTEIPQRAKKIDSDAG*WPMPGR Trigger: CCTTCCTGGCATTGGCCATCACCCAGCATCAGAGTC...TATTTTCTTAGCCCTCTGAGGGATCTCTGTAAGTAGGGCCACGACAATGAATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| CDS-3UTR GCA 90 bp | TTCCAATCCTACCCATTGAATTCATTGTCGTGGCCCTACTTACAGAGATCCCTCCCAATGCCAGGAAGGTaGAGAAGGCGGAAACGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: FQSYPLNSLSWPYLQRSLPMPGR*RRRKRR Trigger: TCTCCGTTTCCGCCTTCTGCACCTTCCTGGCATTGG...GAGGGATCTCTGTAAGTAGGGCCACGACAATGAATTCAATGGGTAGGATTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| CDS-3UTR TCA 90 bp | GTTCCAATCCTACCCATTGAATTCATTGTCGTGGCCCTACTTACAGAGATCCCTTGCATGTACATCACGTaGGTCACCAAGACCCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: VPILPIEFIVVALLTEIPCMYIT*VTKTHS Trigger: ACTGTGGGTCTTGGTGACTCACGTGATGTACATGCA...AGGGATCTCTGTAAGTAGGGCCACGACAATGAATTCAATGGGTAGGATTGGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| 3UTR CAA 72 bp | GGACCTAACTCAGACCCTCTAGTCCCTTGTCCTTCCTaGGCTAATACATGCAGGAAGAAACCACTCCAAATA | + |
|
Preference number: 4 (lower is better) Translates to: GPNSDPLVPCPS*ANTCRKKPLQI Trigger: TATTTGGAGTGGTTTCTTCCTGCATGTATTAGCCAAGGAAGGACAAGGGACTAGAGGGTCTGAGTTAGGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| CDS TCA 90 bp | AGACCACCGTCCAGACGAAGAAGATGGAGAAGCCGGCTACCGAGCTaGAGCCGGAGTAGGCGGCGCGGAGGCCGAGCTGCAGCCGGGACG | + |
|
Preference number: 5 (lower is better) Translates to: RPPSRRRRWRSRLPS*SRSRRRGGRAAAGT Trigger: CGTCCCGGCTGCAGCTCGGCCTCCGCGCCGCCTACTCCGGCTTCAGCTCGGTAGCCGGCTTCTCCATCTTCTTCGTCTGGACGGTGGTCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000135073.2 |
||
| CDS TCA 90 bp | AGACCACCGTCCAGACGAAGAAGATGGAGAAGCCGGCTACCGAGCTaGAGCCGGAGTAGGCGGCGCGGAGGCCGAGCTGCAGCCGGGACN | + |
|
Preference number: 5 (lower is better) Translates to: RPPSRRRRWRSRLPS*SRSRRRGGRAAAGT Trigger: NGTCCCGGCTGCAGCTCGGCCTCCGCGCCGCCTACTCCGGCTTCAGCTCGGTAGCCGGCTTCTCCATCTTCTTCGTCTGGACGGTGGTCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229084.2 |
||
| CDS-3UTR CAA 90 bp | GTCACCAAGACCCACAGTGCCAGGACACCGTGTTCCAGAAGCCAGCATGCCCGACGCCGCAGTCCCCGGTaGTCGGTAGACCACCGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: VTKTHSARTPCSRSQHARRRSPR*SVDHRP Trigger: TGGACGGTGGTCTACCGACAACCGGGGACTGCGGCG...TCGGGCATGCTGGCTTCTGGAACACGGTGTCCTGGCACTGTGGGTCTTGGTGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135073.2 |
||
| CDS GCA 90 bp | GGTGATGGCCAATGCCAGGAAGGTGCAGAAGGCGGAAACGGAGACTaGCGAGAAGAGAGCACCCACGAAGAAGAAGCCGCGCAGCCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: GDGQCQEGAEGGNGD*REESTHEEEAAQPS Trigger: AGAGGGCTGCGCGGCTTCTTCTTCGTGGGTGCTCTCTTCTCGGCAGTCTCCGTTTCCGCCTTCTGCACCTTCCTGGCATTGGCCATCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| CDS-3UTR CAA 90 bp | GAGAAACTGAACGGGCCCATATACTCTGCCATGGTTCTGGAGTTCCCCAGGGGTCGCCGCAGTCCCCGGTaGTCGGTAGACCACCGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: EKLNGPIYSAMVLEFPRGRRSPR*SVDHRP Trigger: TGGACGGTGGTCTACCGACAACCGGGGACTGCGGCG...ACCCCTGGGGAACTCCAGAACCATGGCAGAGTATATGGGCCCGTTCAGTTTCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
||
| CDS-3UTR CAA 90 bp | TTGGAAAGGTCTAAGCTGCCCTCTAGCTGGGCTAACGGGCAGATTGGGCAGATTCGCCGCAGTCCCCGGTaGTCGGTAGACCACCGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: LERSKLPSSWANGQIGQIRRSPR*SVDHRP Trigger: TGGACGGTGGTCTACCGACAACCGGGGACTGCGGCG...AATCTGCCCAATCTGCCCGTTAGCCCAGCTAGAGGGCAGCTTAGACCTTTCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
||
| CDS GCA 90 bp | GTAGCTGTTCGGGTCTTTGAGACTCTGATGCTGGGTGATGGCCAATaGCAGGAAGGTGCAGAAGGCGGAAACGGAGACTGCCGAGAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: VAVRVFETLMLGDGQ*QEGAEGGNGDCREE Trigger: CTCTTCTCGGCAGTCTCCGTTTCCGCCTTCTGCACCTTCCTGGCATTGGCCATCACCCAGCATCAGAGTCTCAAAGACCCGAACAGCTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
||
| CDS-3UTR CAA 90 bp | GTCACCAAGACCCACAGTGCCAGGACACCGTGTTCCAGAAGCCAGCATGCCCGATCAGAAGTGGAGTGCTaGCAAGTCAGAAAACCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: VTKTHSARTPCSRSQHARSEVEC*QVRKPA Trigger: AGCAGGTTTTCTGACTTGCAAGCACTCCACTTCTGA...TCGGGCATGCTGGCTTCTGGAACACGGTGTCCTGGCACTGTGGGTCTTGGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135073.2 |
||
| CDS-3UTR CAA 90 bp | GTACTAAAGATTCCTCTCTTGACCAGACCTTTGATGCCTCCCCCACACACAGCTAGTAGGAAGGCCCACTaGAAGGAAATGAAGCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: VLKIPLLTRPLMPPPHTASRKAH*KEMKLQ Trigger: CTGGAGCTTCATTTCCTTCAAGTGGGCCTTCCTACT...AGCTGTGTGTGGGGGAGGCATCAAAGGTCTGGTCAAGAGAGGAATCTTTAGTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
||
| CDS-3UTR CAA 90 bp | GGATGGAGATCTGTACTAAAGATTCCTCTCTTGACCAGACCTTTGATGCCTCCCAGTAGGAAGGCCCACTaGAAGGAAATGAAGCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: GWRSVLKIPLLTRPLMPPSRKAH*KEMKLQ Trigger: CTGGAGCTTCATTTCCTTCAAGTGGGCCTTCCTACT...GGGAGGCATCAAAGGTCTGGTCAAGAGAGGAATCTTTAGTACAGATCTCCATCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117892.2 ENSMUST00000229084.2 |
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| CDS TCA 72 bp | TCCAGACGAAGAAGATGGAGAAGCCGGCTACCGAGCTaGAGCCGGAGTAGGCGGCGCGGAGGCCGAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SRRRRWRSRLPS*SRSRRRGGRAA Trigger: TGCAGCTCGGCCTCCGCGCCGCCTACTCCGGCTTCAGCTCGGTAGCCGGCTTCTCCATCTTCTTCGTCTGGA 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000117892.2 ENSMUST00000135073.2 ENSMUST00000229084.2 |
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| CDS GCA 72 bp | CAATGCCAGGAAGGTGCAGAAGGCGGAAACGGAGACTaGCGAGAAGAGAGCACCCACGAAGAAGAAGCCGCG | + |
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Preference number: 6 (lower is better) Translates to: QCQEGAEGGNGD*REESTHEEEAA Trigger: CGCGGCTTCTTCTTCGTGGGTGCTCTCTTCTCGGCAGTCTCCGTTTCCGCCTTCTGCACCTTCCTGGCATTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117892.2 |
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