RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC45A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039838

Ensembl transcript IDs: ENSMUST00000037827.10, ENSMUST00000117997.2

Found 238 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGAATTTGATCTCAGTGCAACTGACAAAAATGAACCCAGGCTGGTaGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGCCTCACAGA +
Preference number: 1 (lower is better)
Translates to: GNLISVQLTKMNPGW*LTRGSSGSRGLPHR
Trigger: TCTGTGAGGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTTCATTTTTGTCAGTTGCACTGAGATCAAATTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR TCA 90 bp ACAGGTGGAAGGAGAAGACCAACTGTATGTACTGAGGTTGTCCTCTaGCCTGCACACACACACACACACACACACACACACACACACACA +
Preference number: 1 (lower is better)
Translates to: TGGRRRPTVCTEVVL*PAHTHTHTHTHTHT
Trigger: TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTCAGAGGACAACCTCAGTACATACAGTTGGTCTTCTCCTTCCACCTGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR CCA 90 bp GTTGGTTGGTTGGTCACACATGCTTATAGTCCAGCACCAAGAGAGTaGAGGAGGCAGGAGAGACACTTTGAGACCAGCTTTAGCTACATG +
Preference number: 1 (lower is better)
Translates to: VGWLVTHAYSPAPRE*RRQERHFETSFSYM
Trigger: CATGTAGCTAAAGCTGGTCTCAAAGTGTCTCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACCAACCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR TCA 90 bp TTTTCCTTTGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATTaGACTTGTTGTGCCCCCATGCATCACATGAGATGTGTAACTAAG +
Preference number: 1 (lower is better)
Translates to: FSFVILSPRPWSLLH*TCCAPMHHMRCVTK
Trigger: CTTAGTTACACATCTCATGTGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACAAAGGAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR-3UTR GCA 90 bp AACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGCCTCACCAGAGCTTCACCCTCTaGCTAGATAATCTCGGTTTC +
Preference number: 2 (lower is better)
Translates to: NPGWWLTRGSSGSRGLPHQSFTL*LDNLGF
Trigger: GAAACCGAGATTATCTAGGCAGAGGGTGAAGCTCTG...GTGAGGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR CAA 90 bp AACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTaGCCTCACAGACTGTGTGATCTACAGAACCTACCTGTATACAGG +
Preference number: 2 (lower is better)
Translates to: NPGWWLTRGSSGSRG*PHRLCDLQNLPVYR
Trigger: CCTGTATACAGGTAGGTTCTGTAGATCACACAGTCTGTGAGGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR-3UTR CCA 90 bp GAATTCCTGATTCACACCCAGCCGAGTCACTGGTTGGTTGGTTGGTCACACATGGTACCAGCAGCTGGCTaGGCAGATGCAGGGGTGGAG +
Preference number: 2 (lower is better)
Translates to: EFLIHTQPSHWLVGWSHMVPAAG*ADAGVE
Trigger: CTCCACCCCTGCATCTGCCCAGCCAGCTGCTGGTAC...CATGTGTGACCAACCAACCAACCAGTGACTCGGCTGGGTGTGAATCAGGAATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR-3UTR TCA 90 bp CTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGACTGTTGAAAACCTTCTaGGAGCAGGGAGAGTATCCT +
Preference number: 2 (lower is better)
Translates to: LGHAFQHSMTSHCIVGRGLLKTF*EQGEYP
Trigger: AGGATACTCTCCCTGCTCTCAGAAGGTTTTCAACAG...TCCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR-3UTR GCA 90 bp CATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATGGAGAAGCCTGGCTGGCTaGCAAGGCCTTTGGTTTCTC +
Preference number: 2 (lower is better)
Translates to: HSGPGTKLSDPNYTASGWRSLAG*QGLWFL
Trigger: GAGAAACCAAAGGCCTTGGCAGCCAGCCAGGCTTCT...CCATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR-3UTR GCA 90 bp TTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACTCGCTGCGGGTCCAGGGGCTTaGCTCACAGACTGTGTGATC +
Preference number: 2 (lower is better)
Translates to: FIEFSRWVLMAPADFKLAAGPGA*LTDCVI
Trigger: GATCACACAGTCTGTGAGGCAAGCCCCTGGACCCGC...AGCGAGTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR-3UTR CCA 90 bp TTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACTCGCTCCAGCACCAAGAGAGTaGAGGAGGCAGGAGAGACAC +
Preference number: 2 (lower is better)
Translates to: FIEFSRWVLMAPADFKLAPAPRE*RRQERH
Trigger: GTGTCTCTCCTGCCTCCTCCACTCTCTTGGTGCTGG...AGCGAGTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR-3UTR TCA 90 bp CCACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGATCCTAGAATGTTTGTaGCATCCTTGGATGACAAAT +
Preference number: 2 (lower is better)
Translates to: PLGHAFQHSMTSHCIVGRILECL*HPWMTN
Trigger: ATTTGTCATCCAAGGATGTCACAAACATTCTAGGAT...CCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR-3UTR CCA 90 bp CACACACACACACACACCAATAGTAAAGTAGTATCTGGGCCGAATAAAACAACCGGGCAGATGCAGGGGTaGAGGGGACACACTCAGAAG +
Preference number: 2 (lower is better)
Translates to: HTHTHTNSKVVSGPNKTTGQMQG*RGHTQK
Trigger: CTTCTGAGTGTGTCCCCTCCACCCCTGCATCTGCCC...GGTTGTTTTATTCGGCCCAGATACTACTTTACTATTGGTGTGTGTGTGTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR-3UTR CCA 90 bp GGTTGGTCACACATGCTTATAGTCCAGCACCAAGAGAGTGGAGGAGGCAGGAGAAAGGCAAAAGCTCTGTaGGGGAATTTGATCTCAGTG +
Preference number: 2 (lower is better)
Translates to: GWSHMLIVQHQESGGGRRKAKAL*GNLISV
Trigger: CACTGAGATCAAATTCCCCCACAGAGCTTTTGCCTT...TCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR CAA 90 bp CTTATAGTCCAGCACCAAGAGAGTGGAGGAGGCAGGAGAGACACTTaGAGACCAGCTTTAGCTACATGGGACTATTGGGGACAACAAAAC +
Preference number: 2 (lower is better)
Translates to: LIVQHQESGGGRRDT*RPALATWDYWGQQN
Trigger: GTTTTGTTGTCCCCAATAGTCCCATGTAGCTAAAGCTGGTCTCAAAGTGTCTCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR-3UTR CCA 90 bp TCCACTTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACAGCCGAGTCACTGGTTaGTTGGTTGGTCACACATGC +
Preference number: 2 (lower is better)
Translates to: STLLSSQDGFSWPQLTSNSRVTG*LVGHTC
Trigger: GCATGTGTGACCAACCAACCAACCAGTGACTCGGCT...GTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAAGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR-3UTR CCA 90 bp AAAGATTTATTTTCCTTTGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATATCCCACTAGAAGCCTaGCTGGCTGCCAAGGCCTTT +
Preference number: 2 (lower is better)
Translates to: KDLFSFVILSPRPWSLLHIPLEA*LAAKAF
Trigger: AAAGGCCTTGGCAGCCAGCCAGGCTTCTAGTGGGAT...ATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACAAAGGAAAATAAATCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR-3UTR CCA 90 bp TGCATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATTCCTTGGATGACAAATaGCACCAGAAACTGTTGAAA +
Preference number: 2 (lower is better)
Translates to: CIVGRGPSFQTQTIQQVDSLDDK*HQKLLK
Trigger: TTTCAACAGTTTCTGGTGCCATTTGTCATCCAAGGA...ATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR-3UTR CCA 90 bp CATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATGGTGGATTAATGATAAATaGTGGATAGATGTTGGATGG +
Preference number: 2 (lower is better)
Translates to: HSGPGTKLSDPNYTASGWWINDK*WIDVGW
Trigger: CCATCCAACATCTATCCACCATTTATCATTAATCCA...CCATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR-3UTR CCA 90 bp AAAGATTTATTTTCCTTTGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATAATGCACAGAGTATATaGCACAGTTACCAGAGGTGC +
Preference number: 2 (lower is better)
Translates to: KDLFSFVILSPRPWSLLHNAQSI*HSYQRC
Trigger: GCACCTCTGGTAACTGTGCCATATACTCTGTGCATT...ATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACAAAGGAAAATAAATCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR CCA 72 bp CATCCCACTAGAAGCCTGGCTGGCTGCCAAGGCCTTTaGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTT +
Preference number: 3 (lower is better)
Translates to: HPTRSLAGCQGL*FLSGQPTADHL
Trigger: AAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGCAGCCAGCCAGGCTTCTAGTGGGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR CCA 72 bp CCTCCAAAGGTAGTAAGGAAGGTACCAGCAGCTGGCTaGGCAGATGCAGGGGTGGAGGGGACACACTCAGAA +
Preference number: 3 (lower is better)
Translates to: PPKVVRKVPAAG*ADAGVEGTHSE
Trigger: TTCTGAGTGTGTCCCCTCCACCCCTGCATCTGCCCAGCCAGCTGCTGGTACCTTCCTTACTACCTTTGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR GCA 72 bp AGCCCGTATTTACATCCCACTAGAAGCCTGGCTGGCTaGCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACA +
Preference number: 3 (lower is better)
Translates to: SPYLHPTRSLAG*QGLWFLSGQPT
Trigger: TGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGCAGCCAGCCAGGCTTCTAGTGGGATGTAAATACGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR CCA 72 bp ATCTCAGTGCAACTGACAAAAATGAACCCAGGCTGGTaGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTG +
Preference number: 3 (lower is better)
Translates to: ISVQLTKMNPGW*LTRGSSGSRGL
Trigger: CAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTTCATTTTTGTCAGTTGCACTGAGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR CCA 72 bp TTGATCTCAGTGCAACTGACAAAAATGAACCCAGGCTaGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGC +
Preference number: 3 (lower is better)
Translates to: LISVQLTKMNPG*WLTRGSSGSRG
Trigger: GCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTTCATTTTTGTCAGTTGCACTGAGATCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR TCA 72 bp GTCCAGCGGGTCCAGGGGCTTGCCTCACAGACTGTGTaGTCTACAGAACCTACCTGTATACAGGTGGAAGGA +
Preference number: 3 (lower is better)
Translates to: VQRVQGLASQTV*STEPTCIQVEG
Trigger: TCCTTCCACCTGTATACAGGTAGGTTCTGTAGATCACACAGTCTGTGAGGCAAGCCCCTGGACCCGCTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR GCA 72 bp CTCAGAAGGGCTCCCTCCATTCAGAGCTTCACCCTCTaGCTAGATAATCTCGGTTTCCAGACAAAGGCCTCG +
Preference number: 3 (lower is better)
Translates to: LRRAPSIQSFTL*LDNLGFQTKAS
Trigger: CGAGGCCTTTGTCTGGAAACCGAGATTATCTAGGCAGAGGGTGAAGCTCTGAATGGAGGGAGCCCTTCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR TCA 72 bp GTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATTaGACTTGTTGTGCCCCCATGCATCACATGAGATGT +
Preference number: 3 (lower is better)
Translates to: VILSPRPWSLLH*TCCAPMHHMRC
Trigger: ACATCTCATGTGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTCAAGATAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR CCA 72 bp GTTTATTTAGCCCGTATTTACATCCCACTAGAAGCCTaGCTGGCTGCCAAGGCCTTTGGTTTCTCAGTGGCC +
Preference number: 3 (lower is better)
Translates to: VYLARIYIPLEA*LAAKAFGFSVA
Trigger: GGCCACTGAGAAACCAAAGGCCTTGGCAGCCAGCCAGGCTTCTAGTGGGATGTAAATACGGGCTAAATAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR CCA 72 bp CTGATTCACACCCAGCCGAGTCACTGGTTGGTTGGTTaGTCACACATGCTTATAGTCCAGCACCAAGAGAGT +
Preference number: 3 (lower is better)
Translates to: LIHTQPSHWLVG*SHMLIVQHQES
Trigger: ACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACCAACCAACCAGTGACTCGGCTGGGTGTGAATCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR-3UTR CAA 90 bp CATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATGGATGTTTGTGACATCCTaGGATGACAAATGGCACCAG +
Preference number: 3 (lower is better)
Translates to: HSGPGTKLSDPNYTASGWMFVTS*DDKWHQ
Trigger: CTGGTGCCATTTGTCATCCAAGGATGTCACAAACAT...CCATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR CCA 72 bp ATTCCTGATTCACACCCAGCCGAGTCACTGGTTGGTTaGTTGGTCACACATGCTTATAGTCCAGCACCAAGA +
Preference number: 3 (lower is better)
Translates to: IPDSHPAESLVG*LVTHAYSPAPR
Trigger: TCTTGGTGCTGGACTATAAGCATGTGTGACCAACCAACCAACCAGTGACTCGGCTGGGTGTGAATCAGGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR TCA 72 bp GTATACAGGTGGAAGGAGAAGACCAACTGTATGTACTaGGGTTGTCCTCTGACCTGCACACACACACACACA +
Preference number: 3 (lower is better)
Translates to: VYRWKEKTNCMY*GCPLTCTHTHT
Trigger: TGTGTGTGTGTGTGTGCAGGTCAGAGGACAACCTCAGTACATACAGTTGGTCTTCTCCTTCCACCTGTATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR CCA 72 bp GACACTTTGAGACCAGCTTTAGCTACATGGGACTATTaGGGACAACAAAACCAAGGCAAAAGCTCTGTGGGG +
Preference number: 3 (lower is better)
Translates to: DTLRPALATWDY*GQQNQGKSSVG
Trigger: CCCCACAGAGCTTTTGCCTTGGTTTTGTTGTCCCCAATAGTCCCATGTAGCTAAAGCTGGTCTCAAAGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR-3UTR CAA 90 bp TTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACTCGCTGGCAGGAGAGACACTTaGAGACCAGCTTTAGCTACA +
Preference number: 3 (lower is better)
Translates to: FIEFSRWVLMAPADFKLAGRRDT*RPALAT
Trigger: TGTAGCTAAAGCTGGTCTCAAAGTGTCTCTCCTGCC...AGCGAGTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR CCA 72 bp TTCAGACCCAAACTATACAGCAAGTGGATGGATGGATaGATAGATGGGTTGATGATGGATAGAAGGATGGAT +
Preference number: 3 (lower is better)
Translates to: FRPKLYSKWMDG*IDGLMMDRRMD
Trigger: ATCCATCCTTCTATCCATCATCAACCCATCTATCCATCCATCCATCCACTTGCTGTATAGTTTGGGTCTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp AACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGCCTCACGCCTTTGGGTCTCCCTaGAACACCACCTCGCCCATG +
Preference number: 4 (lower is better)
Translates to: NPGWWLTRGSSGSRGLPHAFGSP*NTTSPM
Trigger: CATGGGCGAGGTGGTGTTCCAGGGAGACCCAAAGGC...GTGAGGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp AACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGCCTCACCCACGTACAAGTTCCTaGAGAGGGTGGCCAACCCGG +
Preference number: 4 (lower is better)
Translates to: NPGWWLTRGSSGSRGLPHPRTSS*RGWPTR
Trigger: CCGGGTTGGCCACCCTCTCCAGGAACTTGTACGTGG...GTGAGGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp AACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGCCTCACCCCAGCAGCCCATGGTaGCACCGCTGTTGTACTTCT +
Preference number: 4 (lower is better)
Translates to: NPGWWLTRGSSGSRGLPHPSSPW*HRCCTS
Trigger: AGAAGTACAACAGCGGTGTCACCATGGGCTGCTGGG...GTGAGGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp GCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCCGGCACTGCCAACAGCTaGGGTCAGGGGCCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: AKAFGFSVASPQLTTFKSGTANS*GQGPQD
Trigger: GTCCTGGGGCCCCTGACCTCAGCTGTTGGCAGTGCC...GGACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp AACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGCCTCACGGATGCCATAGGTGGTaGAGAGGGACAGGACCACGT +
Preference number: 4 (lower is better)
Translates to: NPGWWLTRGSSGSRGLPHGCHRW*RGTGPR
Trigger: ACGTGGTCCTGTCCCTCTGCACCACCTATGGCATCC...GTGAGGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp AAAATGAACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGTGTTGGCCCGGTGGCTaGTGTGTCCTGTCACGGACC +
Preference number: 4 (lower is better)
Translates to: KMNPGWWLTRGSSGSRGLCWPGG*CVLSRT
Trigger: GGTCCGTGACAGGACACATCAGCCACCGGGCCAACA...CAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTTCATTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp CCACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGCATCCGAGCCCAAGGTaGGGGGTCCCTCTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: PLGHAFQHSMTSHCIVGRHPSPR*GVPLSS
Trigger: AGAGGAGAGAGGGACCCCTCACCTTGGGCTCGGATG...CCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp GAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTTGTTGTGCCCCCATGCATCACCATGCCACGCCGTGTaGCATCCGCACTGGACCCTG +
Preference number: 4 (lower is better)
Translates to: ESQAMVPAALNLLCPHASPCHAV*HPHWTL
Trigger: CAGGGTCCAGTGCGGATGGCACACGGCGTGGCATGG...TGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp AAAATGAACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGAGTCCACCAGCTCGATaGGACATGGGGTGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: KMNPGWWLTRGSSGSRGLSPPAR*DMGCWG
Trigger: CCCCCAACACCCCATGTCCCATCGAGCTGGTGGACT...CAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTTCATTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp ACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGGACCTCCAGAAGTCCTaGGGAGCCACACTGGGGATG +
Preference number: 4 (lower is better)
Translates to: TRPRLSTLHDFPLHSGPGDLQKS*GATLGM
Trigger: CATCCCCAGTGTGGCTCCTCAGGACTTCTGGAGGTC...CCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp CTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGATCTTGGGGTGGCGTTTaGAGTTGTTGGCCCGGTGGC +
Preference number: 4 (lower is better)
Translates to: LGHAFQHSMTSHCIVGRGSWGGV*SCWPGG
Trigger: GCCACCGGGCCAACAACTTCAAACGCCACCCCAAGA...TCCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp TGCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCCGAGGCCCGTGGCTTTaGGGTGTCCAGAGAGCCTAC +
Preference number: 4 (lower is better)
Translates to: CQGLWFLSGQPTADHLQVRGPWL*GVQRAY
Trigger: GTAGGCTCTCTGGACACCTCAAAGCCACGGGCCTCG...GACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp GAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTTGTTGTGCCCCCATGCATCACCCGCCATGAGGGCATaGATGTTCAGGCCTCGGTCC +
Preference number: 4 (lower is better)
Translates to: ESQAMVPAALNLLCPHASPAMRA*MFRPRS
Trigger: GGACCGAGGCCTGAACATCCATGCCCTCATGGCGGG...TGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp TGCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCTGGGGCTGGAGAAGCTaGCGTACAGGCTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: CQGLWFLSGQPTADHLQVWGWRS*RTGWWL
Trigger: CAGCCACCAGCCTGTACGCCAGCTTCTCCAGCCCCA...GACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp CTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGAGCCTTTGGGTCTCCCTaGAACACCACCTCGCCCATG +
Preference number: 4 (lower is better)
Translates to: LGHAFQHSMTSHCIVGRGAFGSP*NTTSPM
Trigger: CATGGGCGAGGTGGTGTTCCAGGGAGACCCAAAGGC...TCCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp AGCGGGTCCAGGGGCTTGCCTCACAGACTGTGTGATCTACAGAACCTACCTGTAAGGCGAGGTAGGCGATaGAGTAGAGGGTGCGGACGC +
Preference number: 4 (lower is better)
Translates to: SGSRGLPHRLCDLQNLPVRRGRR*SRGCGR
Trigger: GCGTCCGCACCCTCTACTTCATCGCCTACCTCGCCT...TACAGGTAGGTTCTGTAGATCACACAGTCTGTGAGGCAAGCCCCTGGACCCGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR GCA 90 bp CCACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGCCTGCCTCGGGACACTaGTGGGGAGAGCCAAGTAAT +
Preference number: 4 (lower is better)
Translates to: PLGHAFQHSMTSHCIVGRPASGH*WGEPSN
Trigger: ATTACTTGGCTCTCCCCAGCAGTGTCCCGAGGCAGG...CCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp CATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATGGAGTGGCTGCTCCGACTaGTCGCTGGAGCCCGTCAGC +
Preference number: 4 (lower is better)
Translates to: HSGPGTKLSDPNYTASGWSGCSD*SLEPVS
Trigger: GCTGACGGGCTCCAGCGAGCAGTCGGAGCAGCCACT...CCATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp GGTTGGTCACACATGCTTATAGTCCAGCACCAAGAGAGTGGAGGAGGCAGGAGAAGTGGCTGCTCCGACTaGTCGCTGGAGCCCGTCAGC +
Preference number: 4 (lower is better)
Translates to: GWSHMLIVQHQESGGGRRSGCSD*SLEPVS
Trigger: GCTGACGGGCTCCAGCGAGCAGTCGGAGCAGCCACT...TCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR GCA 90 bp AATGAACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGCCGTTGTACTTCTGATATaGTTCCGACGTGTGCGGTGC +
Preference number: 4 (lower is better)
Translates to: NEPRLVADKRVQRVQGLAVVLLI*FRRVRC
Trigger: GCACCGCACACGTCGGAAGCATATCAGAAGTACAAC...GGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTTCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR GCA 90 bp GCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCCGGGAGTAGGGCAGGGTaGAGAGCGTGGAAAACAGGA +
Preference number: 4 (lower is better)
Translates to: AKAFGFSVASPQLTTFKSGSRAG*RAWKTG
Trigger: TCCTGTTTTCCACGCTCTGCACCCTGCCCTACTCCC...GGACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp GCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCCCGGACCCTGAGTAGCTaGAGATGGGAGACCTCCAGA +
Preference number: 4 (lower is better)
Translates to: AKAFGFSVASPQLTTFKSRTLSS*RWETSR
Trigger: TCTGGAGGTCTCCCATCTCCAGCTACTCAGGGTCCG...GGACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp GAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTTGTTGTGCCCCCATGCATCAAGTCCACCAGCTCGATaGGACATGGGGTGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: ESQAMVPAALNLLCPHASSPPAR*DMGCWG
Trigger: CCCCCAACACCCCATGTCCCATCGAGCTGGTGGACT...TGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp ACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGCCCACTTGTGGTTGGTaGCTGTGTCAGCCAAGGCCA +
Preference number: 4 (lower is better)
Translates to: TRPRLSTLHDFPLHSGPGPTCGW*LCQPRP
Trigger: TGGCCTTGGCTGACACAGCCACCAACCACAAGTGGG...CCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp TGCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCGGGCCCTCCCGAAGCTaGTCTTGTCCCAATGGATGC +
Preference number: 4 (lower is better)
Translates to: CQGLWFLSGQPTADHLQVGPSRS*SCPNGC
Trigger: GCATCCATTGGGACAAGACCAGCTTCGGGAGGGCCC...GACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp CATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATGGGCTCCGACTGCTCGCTaGAGCCCGTCAGCTCGCTCT +
Preference number: 4 (lower is better)
Translates to: HSGPGTKLSDPNYTASGWAPTAR*SPSARS
Trigger: AGAGCGAGCTGACGGGCTCCAGCGAGCAGTCGGAGC...CCATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp GGTTGGTCACACATGCTTATAGTCCAGCACCAAGAGAGTGGAGGAGGCAGGAGAGCTCCGACTGCTCGCTaGAGCCCGTCAGCTCGCTCT +
Preference number: 4 (lower is better)
Translates to: GWSHMLIVQHQESGGGRRAPTAR*SPSARS
Trigger: AGAGCGAGCTGACGGGCTCCAGCGAGCAGTCGGAGC...TCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp GAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTTGTTGTGCCCCCATGCATCACCACGTACAAGTTCCTaGAGAGGGTGGCCAACCCGG +
Preference number: 4 (lower is better)
Translates to: ESQAMVPAALNLLCPHASPRTSS*RGWPTR
Trigger: CCGGGTTGGCCACCCTCTCCAGGAACTTGTACGTGG...TGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp CATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATGGTGTTGGCCCGGTGGCTaGTGTGTCCTGTCACGGACC +
Preference number: 4 (lower is better)
Translates to: HSGPGTKLSDPNYTASGWCWPGG*CVLSRT
Trigger: GGTCCGTGACAGGACACATCAGCCACCGGGCCAACA...CCATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp GGTTGGTCACACATGCTTATAGTCCAGCACCAAGAGAGTGGAGGAGGCAGGAGACATCCGAGCCCAAGGTaGGGGGTCCCTCTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: GWSHMLIVQHQESGGGRRHPSPR*GVPLSS
Trigger: AGAGGAGAGAGGGACCCCTCACCTTGGGCTCGGATG...TCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp TGCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCCCCAGCAGCCCATGGTaGCACCGCTGTTGTACTTCT +
Preference number: 4 (lower is better)
Translates to: CQGLWFLSGQPTADHLQVPSSPW*HRCCTS
Trigger: AGAAGTACAACAGCGGTGTCACCATGGGCTGCTGGG...GACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp GCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCCAAGGACCTCTGTGGGTaGAAGTCCCCAAAGTCCACC +
Preference number: 4 (lower is better)
Translates to: AKAFGFSVASPQLTTFKSKDLCG*KSPKST
Trigger: GGTGGACTTTGGGGACTTGCACCCACAGAGGTCCTT...GGACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp AGGAACCCTTTCCCCAGTGTCCCCGTTCAGAGTGGGAAGTCACCTGGATGTAGCTCTGGCAGGCCCATTTaGAGGAGTACCGGAGTCACG +
Preference number: 4 (lower is better)
Translates to: RNPFPSVPVQSGKSPGCSSGRPI*RSTGVT
Trigger: CGTGACTCCGGTACTCCTGCAAATGGGCCTGCCAGA...GCTACATCCAGGTGACTTCCCACTCTGAACGGGGACACTGGGGAAAGGGTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR GCA 90 bp ACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGGCACCCAACAGAGGCTaGAGCAAGAATCCGAGGATG +
Preference number: 4 (lower is better)
Translates to: TRPRLSTLHDFPLHSGPGAPNRG*SKNPRM
Trigger: CATCCTCGGATTCTTGCTGCAGCCTCTGTTGGGTGC...CCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp CCACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGCGTGGAAAACAGGATaGCATAGGTGGTGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: PLGHAFQHSMTSHCIVGRAWKTG*HRWCRG
Trigger: CCCTCTGCACCACCTATGGCATCCTGTTTTCCACGC...CCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp ACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGAAGTTGTTGGCCCGGTaGCTGATGTGTCCTGTCACG +
Preference number: 4 (lower is better)
Translates to: TRPRLSTLHDFPLHSGPGKLLAR*LMCPVT
Trigger: CGTGACAGGACACATCAGCCACCGGGCCAACAACTT...CCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp GAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTTGTTGTGCCCCCATGCATCAGCTGTAGAGCTGGTCTaGCAGGCCCATTTGCAGGAG +
Preference number: 4 (lower is better)
Translates to: ESQAMVPAALNLLCPHASAVELV*QAHLQE
Trigger: CTCCTGCAAATGGGCCTGCCAGACCAGCTCTACAGC...TGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp AGGAACCCTTTCCCCAGTGTCCCCGTTCAGAGTGGGAAGTCACCTGGATGTAGCGCTGTAGAGCTGGTCTaGCAGGCCCATTTGCAGGAG +
Preference number: 4 (lower is better)
Translates to: RNPFPSVPVQSGKSPGCSAVELV*QAHLQE
Trigger: CTCCTGCAAATGGGCCTGCCAGACCAGCTCTACAGC...GCTACATCCAGGTGACTTCCCACTCTGAACGGGGACACTGGGGAAAGGGTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp GCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCCGGGCAATGGGAGGCTTaGGCTCTTCATAGCTGTCCT +
Preference number: 4 (lower is better)
Translates to: AKAFGFSVASPQLTTFKSGQWEA*ALHSCP
Trigger: AGGACAGCTATGAAGAGCCCAAGCCTCCCATTGCCC...GGACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp TGCATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATAGTTCCTGGAGAGGGTaGCCAACCCGGTCCCCAGGC +
Preference number: 4 (lower is better)
Translates to: CIVGRGPSFQTQTIQQVDSSWRG*PTRSPG
Trigger: GCCTGGGGACCGGGTTGGCCACCCTCTCCAGGAACT...ATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp ACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGTGGCCAGGACAAGAATaGAAGGGCGTCTCCTTCCAA +
Preference number: 4 (lower is better)
Translates to: TRPRLSTLHDFPLHSGPGWPGQE*KGVSFQ
Trigger: TTGGAAGGAGACGCCCTTTCATTCTTGTCCTGGCCA...CCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp CCAGCGGGTCCAGGGGCTTGCCTCACAGACTGTGTGATCTACAGAACCTACCTGAGCCACCCCAGAAAGTaGTTGACACAGAGATTGCGC +
Preference number: 4 (lower is better)
Translates to: PAGPGACLTDCVIYRTYLSHPRK*LTQRLR
Trigger: GCGCAATCTCTGTGTCAATCACTTTCTGGGGTGGCT...CAGGTAGGTTCTGTAGATCACACAGTCTGTGAGGCAAGCCCCTGGACCCGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp CCACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGACACCACCTCGCCCATaGAGTCCGTGTAAAAGAGCA +
Preference number: 4 (lower is better)
Translates to: PLGHAFQHSMTSHCIVGRTPPRP*SPCKRA
Trigger: TGCTCTTTTACACGGACTTCATGGGCGAGGTGGTGT...CCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp CCACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGCCGCTGTTGTACTTCTaGTATGCTTCCGACGTGTGC +
Preference number: 4 (lower is better)
Translates to: PLGHAFQHSMTSHCIVGRPLLYF*YASDVC
Trigger: GCACACGTCGGAAGCATATCAGAAGTACAACAGCGG...CCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp CCAGCGGGTCCAGGGGCTTGCCTCACAGACTGTGTGATCTACAGAACCTACCTGCCGCTGTTGTACTTCTaGTATGCTTCCGACGTGTGC +
Preference number: 4 (lower is better)
Translates to: PAGPGACLTDCVIYRTYLPLLYF*YASDVC
Trigger: GCACACGTCGGAAGCATATCAGAAGTACAACAGCGG...CAGGTAGGTTCTGTAGATCACACAGTCTGTGAGGCAAGCCCCTGGACCCGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp TGCATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATAGGCGAGGTAGGCGATaGAGTAGAGGGTGCGGACGC +
Preference number: 4 (lower is better)
Translates to: CIVGRGPSFQTQTIQQVDRRGRR*SRGCGR
Trigger: GCGTCCGCACCCTCTACTTCATCGCCTACCTCGCCT...ATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp TGCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCACACTGTCAGGAGGATaGCCCACTTGTGGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: CQGLWFLSGQPTADHLQVTLSGG*PTCGWW
Trigger: CCACCAACCACAAGTGGGGCATCCTCCTGACAGTGT...GACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp AGGAACCCTTTCCCCAGTGTCCCCGTTCAGAGTGGGAAGTCACCTGGATGTAGCGCGTGGAAAACAGGATaGCATAGGTGGTGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: RNPFPSVPVQSGKSPGCSAWKTG*HRWCRG
Trigger: CCCTCTGCACCACCTATGGCATCCTGTTTTCCACGC...GCTACATCCAGGTGACTTCCCACTCTGAACGGGGACACTGGGGAAAGGGTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp ACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGCTGAGTAGCTGGAGATaGGAGACCTCCAGAAGTCCT +
Preference number: 4 (lower is better)
Translates to: TRPRLSTLHDFPLHSGPGLSSWR*ETSRSP
Trigger: AGGACTTCTGGAGGTCTCCCATCTCCAGCTACTCAG...CCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp CCAGCGGGTCCAGGGGCTTGCCTCACAGACTGTGTGATCTACAGAACCTACCTGCTGAGTAGCTGGAGATaGGAGACCTCCAGAAGTCCT +
Preference number: 4 (lower is better)
Translates to: PAGPGACLTDCVIYRTYLLSSWR*ETSRSP
Trigger: AGGACTTCTGGAGGTCTCCCATCTCCAGCTACTCAG...CAGGTAGGTTCTGTAGATCACACAGTCTGTGAGGCAAGCCCCTGGACCCGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp AGGTTGTCCTCTGACCTGCACACACACACACACACACACACACACACACACACATGGGGCTGGAGAAGCTaGCGTACAGGCTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: RLSSDLHTHTHTHTHTHTWGWRS*RTGWWL
Trigger: CAGCCACCAGCCTGTACGCCAGCTTCTCCAGCCCCA...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTCAGAGGACAACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp CTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGATTGCGACCTGTTGGCTaGAGGTCACATTCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LGHAFQHSMTSHCIVGRGLRPVG*RSHSFF
Trigger: GAAGAAGGAATGTGACCTTCAGCCAACAGGTCGCAA...TCCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp CTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGAGTTGTACTTCTGATATaGTTCCGACGTGTGCGGTGC +
Preference number: 4 (lower is better)
Translates to: LGHAFQHSMTSHCIVGRGVVLLI*FRRVRC
Trigger: GCACCGCACACGTCGGAAGCATATCAGAAGTACAAC...TCCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp GAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTTGTTGTGCCCCCATGCATCATCATGTAGGCGTGGCTaGGGTTATCTGCAGAGTCTG +
Preference number: 4 (lower is better)
Translates to: ESQAMVPAALNLLCPHASSCRRG*GYLQSL
Trigger: CAGACTCTGCAGATAACCCCAGCCACGCCTACATGA...TGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp AGAATTCCTGATTCACACCCAGCCGAGTCACTGGTTGGTTGGTTGGTCACACATTTCAGGCCTCGGTCCTaGTCTACCGGGCCGCACACA +
Preference number: 4 (lower is better)
Translates to: RIPDSHPAESLVGWLVTHFRPRS*STGPHT
Trigger: TGTGTGCGGCCCGGTAGACCAGGACCGAGGCCTGAA...ATGTGTGACCAACCAACCAACCAGTGACTCGGCTGGGTGTGAATCAGGAATTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp AGGTTGTCCTCTGACCTGCACACACACACACACACACACACACACACACACACAGGGCCCTCCCGAAGCTaGTCTTGTCCCAATGGATGC +
Preference number: 4 (lower is better)
Translates to: RLSSDLHTHTHTHTHTHTGPSRS*SCPNGC
Trigger: GCATCCATTGGGACAAGACCAGCTTCGGGAGGGCCC...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTCAGAGGACAACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp AGAATTCCTGATTCACACCCAGCCGAGTCACTGGTTGGTTGGTTGGTCACACATGTGGGGAGATGGGGCTaGAGAAGCTGGCGTACAGGC +
Preference number: 4 (lower is better)
Translates to: RIPDSHPAESLVGWLVTHVGRWG*RSWRTG
Trigger: GCCTGTACGCCAGCTTCTCCAGCCCCATCTCCCCAC...ATGTGTGACCAACCAACCAACCAGTGACTCGGCTGGGTGTGAATCAGGAATTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp TGCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCGTGTGCCATCCGCACTaGACCCTGCAAACTTCTTAC +
Preference number: 4 (lower is better)
Translates to: CQGLWFLSGQPTADHLQVVCHPH*TLQTSY
Trigger: GTAAGAAGTTTGCAGGGTCCAGTGCGGATGGCACAC...GACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp CCACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGAGTACATCACACCATTaGCACTGCCAACAGCTGAGG +
Preference number: 4 (lower is better)
Translates to: PLGHAFQHSMTSHCIVGRSTSHH*HCQQLR
Trigger: CCTCAGCTGTTGGCAGTGCCAATGGTGTGATGTACT...CCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp GGTTGGTCACACATGCTTATAGTCCAGCACCAAGAGAGTGGAGGAGGCAGGAGACAGCATGCCCTCAAATaGGAGCCACCCCAGAAAGTG +
Preference number: 4 (lower is better)
Translates to: GWSHMLIVQHQESGGGRRQHALK*EPPQKV
Trigger: CACTTTCTGGGGTGGCTCTCATTTGAGGGCATGCTG...TCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp TGCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCAGTAGAAGGCTGCACTaGAGGCATAGATGCACATGC +
Preference number: 4 (lower is better)
Translates to: CQGLWFLSGQPTADHLQVSRRLH*RHRCTC
Trigger: GCATGTGCATCTATGCCTTCAGTGCAGCCTTCTACT...GACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp ACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGTTTCTCCAGGATAGCTaGGTAGAAGGCTGCACTGAA +
Preference number: 4 (lower is better)
Translates to: TRPRLSTLHDFPLHSGPGFLQDS*VEGCTE
Trigger: TTCAGTGCAGCCTTCTACTCAGCTATCCTGGAGAAA...CCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp CTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGAGTTATCTGCAGAGTCTaGACTGAAGTCCATCAGCAC +
Preference number: 4 (lower is better)
Translates to: LGHAFQHSMTSHCIVGRGVICRV*TEVHQH
Trigger: GTGCTGATGGACTTCAGTGCAGACTCTGCAGATAAC...TCCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp TGCATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATGGATGCCATAGGTGGTaGAGAGGGACAGGACCACGT +
Preference number: 4 (lower is better)
Translates to: CIVGRGPSFQTQTIQQVDGCHRW*RGTGPR
Trigger: ACGTGGTCCTGTCCCTCTGCACCACCTATGGCATCC...ATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp CCACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGATCCGCACTGGACCCTaGAAACTTCTTACTCTGGTA +
Preference number: 4 (lower is better)
Translates to: PLGHAFQHSMTSHCIVGRIRTGP*KLLTLV
Trigger: TACCAGAGTAAGAAGTTTGCAGGGTCCAGTGCGGAT...CCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp AGCGGGTCCAGGGGCTTGCCTCACAGACTGTGTGATCTACAGAACCTACCTGTACCAAAAGGACCTCTGTaGGTGCAAGTCCCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: SGSRGLPHRLCDLQNLPVPKGPL*VQVPKV
Trigger: GACTTTGGGGACTTGCACCCACAGAGGTCCTTTTGG...TACAGGTAGGTTCTGTAGATCACACAGTCTGTGAGGCAAGCCCCTGGACCCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp AGGTTGTCCTCTGACCTGCACACACACACACACACACACACACACACACACACACCCACTTGTGGTTGGTaGCTGTGTCAGCCAAGGCCA +
Preference number: 4 (lower is better)
Translates to: RLSSDLHTHTHTHTHTHTPTCGW*LCQPRP
Trigger: TGGCCTTGGCTGACACAGCCACCAACCACAAGTGGG...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTCAGAGGACAACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp GAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTTGTTGTGCCCCCATGCATCAGCACGCTGTCTATGTTaGAGGTGCCAAAGGATGATG +
Preference number: 4 (lower is better)
Translates to: ESQAMVPAALNLLCPHASARCLC*RCQRMM
Trigger: CATCATCCTTTGGCACCTCCAACATAGACAGCGTGC...TGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp AGGAACCCTTTCCCCAGTGTCCCCGTTCAGAGTGGGAAGTCACCTGGATGTAGCGCACGCTGTCTATGTTaGAGGTGCCAAAGGATGATG +
Preference number: 4 (lower is better)
Translates to: RNPFPSVPVQSGKSPGCSARCLC*RCQRMM
Trigger: CATCATCCTTTGGCACCTCCAACATAGACAGCGTGC...GCTACATCCAGGTGACTTCCCACTCTGAACGGGGACACTGGGGAAAGGGTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp GCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCCCATTCCTTCTTCTGCTaGTTTCAGGGCCATTTCCTC +
Preference number: 4 (lower is better)
Translates to: AKAFGFSVASPQLTTFKSHSFFC*FQGHFL
Trigger: GAGGAAATGGCCCTGAAACCAGCAGAAGAAGGAATG...GGACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp TTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACTCGCTCGAGGCCCGTGGCTTTaGGGTGTCCAGAGAGCCTAC +
Preference number: 4 (lower is better)
Translates to: FIEFSRWVLMAPADFKLARGPWL*GVQRAY
Trigger: GTAGGCTCTCTGGACACCTCAAAGCCACGGGCCTCG...AGCGAGTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp CATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATGGAGCCACCCCAGAAAGTaGTTGACACAGAGATTGCGC +
Preference number: 4 (lower is better)
Translates to: HSGPGTKLSDPNYTASGWSHPRK*LTQRLR
Trigger: GCGCAATCTCTGTGTCAATCACTTTCTGGGGTGGCT...CCATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp TCCACTTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACCCCGCCATGAGGGCATaGATGTTCAGGCCTCGGTCC +
Preference number: 4 (lower is better)
Translates to: STLLSSQDGFSWPQLTSNPAMRA*MFRPRS
Trigger: GGACCGAGGCCTGAACATCCATGCCCTCATGGCGGG...GTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAAGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR CAA 72 bp CTTGAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTaGTTGTGCCCCCATGCATCACATGAGATGTGTAAC +
Preference number: 4 (lower is better)
Translates to: LESQAMVPAALN*LCPHASHEMCN
Trigger: GTTACACATCTCATGTGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR CAA 72 bp CCTGATTCACACCCAGCCGAGTCACTGGTTGGTTGGTaGGTCACACATGCTTATAGTCCAGCACCAAGAGAG +
Preference number: 4 (lower is better)
Translates to: PDSHPAESLVGW*VTHAYSPAPRE
Trigger: CTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACCAACCAACCAGTGACTCGGCTGGGTGTGAATCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp TCCACTTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACGACCTCCAGAAGTCCTaGGGAGCCACACTGGGGATG +
Preference number: 4 (lower is better)
Translates to: STLLSSQDGFSWPQLTSNDLQKS*GATLGM
Trigger: CATCCCCAGTGTGGCTCCTCAGGACTTCTGGAGGTC...GTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAAGTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp GAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTTGTTGTGCCCCCATGCATCATCTCCATGGCGTAGCTaGATTCGATACCAAACAGAA +
Preference number: 4 (lower is better)
Translates to: ESQAMVPAALNLLCPHASSPWRS*IRYQTE
Trigger: TTCTGTTTGGTATCGAATTCAGCTACGCCATGGAGA...TGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp CATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATGGAGAGAGACAAGGATCTaGGCCAGAAAGTACTGGCAG +
Preference number: 4 (lower is better)
Translates to: HSGPGTKLSDPNYTASGWRETRI*ARKYWQ
Trigger: CTGCCAGTACTTTCTGGCTCAGATCCTTGTCTCTCT...CCATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp AGAATTCCTGATTCACACCCAGCCGAGTCACTGGTTGGTTGGTTGGTCACACATAAGGACCTCTGTGGGTaGAAGTCCCCAAAGTCCACC +
Preference number: 4 (lower is better)
Translates to: RIPDSHPAESLVGWLVTHKDLCG*KSPKST
Trigger: GGTGGACTTTGGGGACTTGCACCCACAGAGGTCCTT...ATGTGTGACCAACCAACCAACCAGTGACTCGGCTGGGTGTGAATCAGGAATTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp AGGAACCCTTTCCCCAGTGTCCCCGTTCAGAGTGGGAAGTCACCTGGATGTAGCATGTTTGCGACCTGTTaGCTGAAGGTCACATTCCTT +
Preference number: 4 (lower is better)
Translates to: RNPFPSVPVQSGKSPGCSMFATC*LKVTFL
Trigger: AAGGAATGTGACCTTCAGCCAACAGGTCGCAAACAT...GCTACATCCAGGTGACTTCCCACTCTGAACGGGGACACTGGGGAAAGGGTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp CACACACACACACACACCAATAGTAAAGTAGTATCTGGGCCGAATAAAACAACCAGTTCCTGGAGAGGGTaGCCAACCCGGTCCCCAGGC +
Preference number: 4 (lower is better)
Translates to: HTHTHTNSKVVSGPNKTTSSWRG*PTRSPG
Trigger: GCCTGGGGACCGGGTTGGCCACCCTCTCCAGGAACT...GGTTGTTTTATTCGGCCCAGATACTACTTTACTATTGGTGTGTGTGTGTGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp AGGTTGTCCTCTGACCTGCACACACACACACACACACACACACACACACACACATCTCCTTCCAAACCTTaGGGTACATCGGTCACTCCA +
Preference number: 4 (lower is better)
Translates to: RLSSDLHTHTHTHTHTHTSPSKP*GTSVTP
Trigger: TGGAGTGACCGATGTACCTCAAGGTTTGGAAGGAGA...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTCAGAGGACAACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp AGAATTCCTGATTCACACCCAGCCGAGTCACTGGTTGGTTGGTTGGTCACACATTGGCCAGGACAAGAATaGAAGGGCGTCTCCTTCCAA +
Preference number: 4 (lower is better)
Translates to: RIPDSHPAESLVGWLVTHWPGQE*KGVSFQ
Trigger: TTGGAAGGAGACGCCCTTTCATTCTTGTCCTGGCCA...ATGTGTGACCAACCAACCAACCAGTGACTCGGCTGGGTGTGAATCAGGAATTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR GCA 90 bp GGTTGGTCACACATGCTTATAGTCCAGCACCAAGAGAGTGGAGGAGGCAGGAGAGTTATCTGCAGAGTCTaGACTGAAGTCCATCAGCAC +
Preference number: 4 (lower is better)
Translates to: GWSHMLIVQHQESGGGRRVICRV*TEVHQH
Trigger: GTGCTGATGGACTTCAGTGCAGACTCTGCAGATAAC...TCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR GCA 90 bp AGAATTCCTGATTCACACCCAGCCGAGTCACTGGTTGGTTGGTTGGTCACACATGTGGCTGGGGTTATCTaGAGAGTCTGCACTGAAGTC +
Preference number: 4 (lower is better)
Translates to: RIPDSHPAESLVGWLVTHVAGVI*RVCTEV
Trigger: GACTTCAGTGCAGACTCTGCAGATAACCCCAGCCAC...ATGTGTGACCAACCAACCAACCAGTGACTCGGCTGGGTGTGAATCAGGAATTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp AAAGATTTATTTTCCTTTGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATTTCAGGCCTCGGTCCTaGTCTACCGGGCCGCACACA +
Preference number: 4 (lower is better)
Translates to: KDLFSFVILSPRPWSLLHFRPRS*STGPHT
Trigger: TGTGTGCGGCCCGGTAGACCAGGACCGAGGCCTGAA...ATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACAAAGGAAAATAAATCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp AAAGATTTATTTTCCTTTGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATGTGGGGAGATGGGGCTaGAGAAGCTGGCGTACAGGC +
Preference number: 4 (lower is better)
Translates to: KDLFSFVILSPRPWSLLHVGRWG*RSWRTG
Trigger: GCCTGTACGCCAGCTTCTCCAGCCCCATCTCCCCAC...ATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACAAAGGAAAATAAATCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp GGTTGGTCACACATGCTTATAGTCCAGCACCAAGAGAGTGGAGGAGGCAGGAGACATTCCTTCTTCTGCTaGTTTCAGGGCCATTTCCTC +
Preference number: 4 (lower is better)
Translates to: GWSHMLIVQHQESGGGRRHSFFC*FQGHFL
Trigger: GAGGAAATGGCCCTGAAACCAGCAGAAGAAGGAATG...TCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR CAA 72 bp TGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATaGAACTTGTTGTGCCCCCATGCATCACATGAGATG +
Preference number: 4 (lower is better)
Translates to: CYLESQAMVPAA*NLLCPHASHEM
Trigger: CATCTCATGTGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp TTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACTCGCTGGGCAATGGGAGGCTTaGGCTCTTCATAGCTGTCCT +
Preference number: 4 (lower is better)
Translates to: FIEFSRWVLMAPADFKLAGQWEA*ALHSCP
Trigger: AGGACAGCTATGAAGAGCCCAAGCCTCCCATTGCCC...AGCGAGTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp CATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATGGATGTTTGCGACCTGTTaGCTGAAGGTCACATTCCTT +
Preference number: 4 (lower is better)
Translates to: HSGPGTKLSDPNYTASGWMFATC*LKVTFL
Trigger: AAGGAATGTGACCTTCAGCCAACAGGTCGCAAACAT...CCATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp TCCACTTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACACAGGATGCCATAGGTaGTGCAGAGGGACAGGACCA +
Preference number: 4 (lower is better)
Translates to: STLLSSQDGFSWPQLTSNTGCHR*CRGTGP
Trigger: TGGTCCTGTCCCTCTGCACCACCTATGGCATCCTGT...GTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAAGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
3UTR CAA 72 bp CTAGAATTCCTGATTCACACCCAGCCGAGTCACTGGTaGGTTGGTTGGTCACACATGCTTATAGTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: LEFLIHTQPSHW*VGWSHMLIVQH
Trigger: GTGCTGGACTATAAGCATGTGTGACCAACCAACCAACCAGTGACTCGGCTGGGTGTGAATCAGGAATTCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp AGGTTGTCCTCTGACCTGCACACACACACACACACACACACACACACACACACATCTCCATGGCGTAGCTaGATTCGATACCAAACAGAA +
Preference number: 4 (lower is better)
Translates to: RLSSDLHTHTHTHTHTHTSPWRS*IRYQTE
Trigger: TTCTGTTTGGTATCGAATTCAGCTACGCCATGGAGA...TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTCAGAGGACAACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp TTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACTCGCTGGAGGTGCCAAAGGATaGTGCGAACTCATTGATGCC +
Preference number: 4 (lower is better)
Translates to: FIEFSRWVLMAPADFKLAGGAKG*CELIDA
Trigger: GGCATCAATGAGTTCGCATCATCCTTTGGCACCTCC...AGCGAGTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp TCCACTTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACACACCACCTCGCCCATaGAGTCCGTGTAAAAGAGCA +
Preference number: 4 (lower is better)
Translates to: STLLSSQDGFSWPQLTSNTPPRP*SPCKRA
Trigger: TGCTCTTTTACACGGACTTCATGGGCGAGGTGGTGT...GTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAAGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp AGAATTCCTGATTCACACCCAGCCGAGTCACTGGTTGGTTGGTTGGTCACACATTTTCTCCAGGATAGCTaGGTAGAAGGCTGCACTGAA +
Preference number: 4 (lower is better)
Translates to: RIPDSHPAESLVGWLVTHFLQDS*VEGCTE
Trigger: TTCAGTGCAGCCTTCTACTCAGCTATCCTGGAGAAA...ATGTGTGACCAACCAACCAACCAGTGACTCGGCTGGGTGTGAATCAGGAATTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR GCA 90 bp AAGATTGCTGCTGTTGTTTATTTAGCCCGTATTTACATCCCACTAGAAGCCTGGTCTGGCAGGCCCATTTaGAGGAGTACCGGAGTCACG +
Preference number: 4 (lower is better)
Translates to: KIAAVVYLARIYIPLEAWSGRPI*RSTGVT
Trigger: CGTGACTCCGGTACTCCTGCAAATGGGCCTGCCAGA...CCAGGCTTCTAGTGGGATGTAAATACGGGCTAAATAAACAACAGCAGCAATCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp CACACACACACACACACCAATAGTAAAGTAGTATCTGGGCCGAATAAAACAACCCCTGCCTCGGGACACTaGTGGGGAGAGCCAAGTAAT +
Preference number: 4 (lower is better)
Translates to: HTHTHTNSKVVSGPNKTTPASGH*WGEPSN
Trigger: ATTACTTGGCTCTCCCCAGCAGTGTCCCGAGGCAGG...GGTTGTTTTATTCGGCCCAGATACTACTTTACTATTGGTGTGTGTGTGTGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR GCA 90 bp CACACACACACACACACCAATAGTAAAGTAGTATCTGGGCCGAATAAAACAACCGGGAGTAGGGCAGGGTaGAGAGCGTGGAAAACAGGA +
Preference number: 4 (lower is better)
Translates to: HTHTHTNSKVVSGPNKTTGSRAG*RAWKTG
Trigger: TCCTGTTTTCCACGCTCTGCACCCTGCCCTACTCCC...GGTTGTTTTATTCGGCCCAGATACTACTTTACTATTGGTGTGTGTGTGTGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp CACACACACACACACACCAATAGTAAAGTAGTATCTGGGCCGAATAAAACAACCCGGACCCTGAGTAGCTaGAGATGGGAGACCTCCAGA +
Preference number: 4 (lower is better)
Translates to: HTHTHTNSKVVSGPNKTTRTLSS*RWETSR
Trigger: TCTGGAGGTCTCCCATCTCCAGCTACTCAGGGTCCG...GGTTGTTTTATTCGGCCCAGATACTACTTTACTATTGGTGTGTGTGTGTGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp TTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACTCGCTTCATGTAGGCGTGGCTaGGGTTATCTGCAGAGTCTG +
Preference number: 4 (lower is better)
Translates to: FIEFSRWVLMAPADFKLASCRRG*GYLQSL
Trigger: CAGACTCTGCAGATAACCCCAGCCACGCCTACATGA...AGCGAGTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp TTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACTCGCTTTGCGACCTGTTGGCTaGAGGTCACATTCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: FIEFSRWVLMAPADFKLALRPVG*RSHSFF
Trigger: GAAGAAGGAATGTGACCTTCAGCCAACAGGTCGCAA...AGCGAGTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR TCA 90 bp AAAGATTTATTTTCCTTTGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATCAGCATGCCCTCAAATaGGAGCCACCCCAGAAAGTG +
Preference number: 4 (lower is better)
Translates to: KDLFSFVILSPRPWSLLHQHALK*EPPQKV
Trigger: CACTTTCTGGGGTGGCTCTCATTTGAGGGCATGCTG...ATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACAAAGGAAAATAAATCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp TCCACTTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACAGTAGAAGGCTGCACTaGAGGCATAGATGCACATGC +
Preference number: 4 (lower is better)
Translates to: STLLSSQDGFSWPQLTSNSRRLH*RHRCTC
Trigger: GCATGTGCATCTATGCCTTCAGTGCAGCCTTCTACT...GTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAAGTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR GCA 90 bp CACACACACACACACACCAATAGTAAAGTAGTATCTGGGCCGAATAAAACAACCACACTGTCAGGAGGATaGCCCACTTGTGGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: HTHTHTNSKVVSGPNKTTTLSGG*PTCGWW
Trigger: CCACCAACCACAAGTGGGGCATCCTCCTGACAGTGT...GGTTGTTTTATTCGGCCCAGATACTACTTTACTATTGGTGTGTGTGTGTGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp TCCACTTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACTTCCTTCTCTTGGGGTaGCGTTTGAAGTTGTTGGCC +
Preference number: 4 (lower is better)
Translates to: STLLSSQDGFSWPQLTSNFLLLG*RLKLLA
Trigger: GGCCAACAACTTCAAACGCCACCCCAAGAGAAGGAA...GTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAAGTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CCA 90 bp AAAGATTTATTTTCCTTTGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATACAGGATGCCATAGGTaGTGCAGAGGGACAGGACCA +
Preference number: 4 (lower is better)
Translates to: KDLFSFVILSPRPWSLLHTGCHR*CRGTGP
Trigger: TGGTCCTGTCCCTCTGCACCACCTATGGCATCCTGT...ATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACAAAGGAAAATAAATCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp AAGATTGCTGCTGTTGTTTATTTAGCCCGTATTTACATCCCACTAGAAGCCTGGGGAGGTGCCAAAGGATaGTGCGAACTCATTGATGCC +
Preference number: 4 (lower is better)
Translates to: KIAAVVYLARIYIPLEAWGGAKG*CELIDA
Trigger: GGCATCAATGAGTTCGCATCATCCTTTGGCACCTCC...CCAGGCTTCTAGTGGGATGTAAATACGGGCTAAATAAACAACAGCAGCAATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR GCA 90 bp AAGATTGCTGCTGTTGTTTATTTAGCCCGTATTTACATCCCACTAGAAGCCTGGGTGGCTGGGGTTATCTaGAGAGTCTGCACTGAAGTC +
Preference number: 4 (lower is better)
Translates to: KIAAVVYLARIYIPLEAWVAGVI*RVCTEV
Trigger: GACTTCAGTGCAGACTCTGCAGATAACCCCAGCCAC...CCAGGCTTCTAGTGGGATGTAAATACGGGCTAAATAAACAACAGCAGCAATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp AAGATTGCTGCTGTTGTTTATTTAGCCCGTATTTACATCCCACTAGAAGCCTGGCCAAAAGGACCTCTGTaGGTGCAAGTCCCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: KIAAVVYLARIYIPLEAWPKGPL*VQVPKV
Trigger: GACTTTGGGGACTTGCACCCACAGAGGTCCTTTTGG...CCAGGCTTCTAGTGGGATGTAAATACGGGCTAAATAAACAACAGCAGCAATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR TCA 90 bp AAAGATTTATTTTCCTTTGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATTCTCCTTCCAAACCTTaGGGTACATCGGTCACTCCA +
Preference number: 4 (lower is better)
Translates to: KDLFSFVILSPRPWSLLHSPSKP*GTSVTP
Trigger: TGGAGTGACCGATGTACCTCAAGGTTTGGAAGGAGA...ATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACAAAGGAAAATAAATCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp AAGATTGCTGCTGTTGTTTATTTAGCCCGTATTTACATCCCACTAGAAGCCTGGTTCCTTCTCTTGGGGTaGCGTTTGAAGTTGTTGGCC +
Preference number: 4 (lower is better)
Translates to: KIAAVVYLARIYIPLEAWFLLLG*RLKLLA
Trigger: GGCCAACAACTTCAAACGCCACCCCAAGAGAAGGAA...CCAGGCTTCTAGTGGGATGTAAATACGGGCTAAATAAACAACAGCAGCAATCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CCA 90 bp AAAGATTTATTTTCCTTTGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATGGAAGGACACGAGGCTaGAGAAGTACATCACACCAT +
Preference number: 4 (lower is better)
Translates to: KDLFSFVILSPRPWSLLHGRTRG*RSTSHH
Trigger: ATGGTGTGATGTACTTCTCCAGCCTCGTGTCCTTCC...ATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACAAAGGAAAATAAATCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
3UTR CAA 72 bp AGATCCGCTGGTGAGAACGGAATTGCATCTTCACTTTaGATAAATGATATTCAATTACACCACCACCACCTC +
Preference number: 4 (lower is better)
Translates to: RSAGENGIASSL*INDIQLHHHHL
Trigger: GAGGTGGTGGTGGTGTAATTGAATATCATTTATCAAAAGTGAAGATGCAATTCCGTTCTCACCAGCGGATCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS TCA 90 bp GGATGCCTCCGACCACATAGCCAAACCCGCCTCCAAGACCCGCCATaGGGGCATGGATGTTCAGGCCTCGGTCCTGGTCTACCGGGCCGC +
Preference number: 5 (lower is better)
Translates to: GCLRPHSQTRLQDPP*GHGCSGLGPGLPGR
Trigger: GCGGCCCGGTAGACCAGGACCGAGGCCTGAACATCCATGCCCTCATGGCGGGTCTTGGAGGCGGGTTTGGCTATGTGGTCGGAGGCATCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp AACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGCCTCACACGTGTGCGGTGCCTTaGGGTCTCCCTGGAACACCA +
Preference number: 5 (lower is better)
Translates to: NPGWWLTRGSSGSRGLPHTCAVP*GLPGTP
Trigger: TGGTGTTCCAGGGAGACCCAAAGGCACCGCACACGT...GTGAGGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS TCA 90 bp AGAGGGTGGCCAACCCGGTCCCCAGGCCGAAGGCGAGGTAGGCGATaGAGTAGAGGGTGCGGACGCTCAGACACTCCTCCAGTTTCTCCA +
Preference number: 5 (lower is better)
Translates to: RGWPTRSPGRRRGRR*SRGCGRSDTPPVSP
Trigger: TGGAGAAACTGGAGGAGTGTCTGAGCGTCCGCACCCTCTACTTCATCGCCTACCTCGCCTTCGGCCTGGGGACCGGGTTGGCCACCCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp AACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGCCTCACGATGATGCGAACTCATaGATGCCTGTGAGGGAGCTG +
Preference number: 5 (lower is better)
Translates to: NPGWWLTRGSSGSRGLPHDDANS*MPVREL
Trigger: CAGCTCCCTCACAGGCATCAATGAGTTCGCATCATC...GTGAGGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS CCA 90 bp TCCATCAGCACCACCCCGCACACTGTCAGGAGGATGCCCCACTTGTaGTTGGTGGCTGTGTCAGCCAAGGCCATGCCAATGTCCCTTCCA +
Preference number: 5 (lower is better)
Translates to: SISTTPHTVRRMPHL*LVAVSAKAMPMSLP
Trigger: TGGAAGGGACATTGGCATGGCCTTGGCTGACACAGCCACCAACCACAAGTGGGGCATCCTCCTGACAGTGTGCGGGGTGGTGCTGATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 90 bp GGGAGTAGGGCAGGGTGCAGAGCGTGGAAAACAGGATGCCATAGGTaGTGCAGAGGGACAGGACCACGTACAAGTTCCTGGAGAGGGTGG +
Preference number: 5 (lower is better)
Translates to: GSRAGCRAWKTGCHR*CRGTGPRTSSWRGW
Trigger: CCACCCTCTCCAGGAACTTGTACGTGGTCCTGTCCCTCTGCACCACCTATGGCATCCTGTTTTCCACGCTCTGCACCCTGCCCTACTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp CTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGACTCTTGGGGTGGCGTTaGAAGTTGTTGGCCCGGTGG +
Preference number: 5 (lower is better)
Translates to: LGHAFQHSMTSHCIVGRGLLGWR*KLLARW
Trigger: CCACCGGGCCAACAACTTCAAACGCCACCCCAAGAG...TCCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp AAAATGAACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGATGCCCCACTTGTGGTaGGTGGCTGTGTCAGCCAAG +
Preference number: 5 (lower is better)
Translates to: KMNPGWWLTRGSSGSRGLMPHLW*VAVSAK
Trigger: CTTGGCTGACACAGCCACCAACCACAAGTGGGGCAT...CAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTTCATTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp CTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGAATGAAGCTGCCATACTaGGGGGTGAGCGGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: LGHAFQHSMTSHCIVGRGMKLPY*GVSGLG
Trigger: ACCCAGCCCGCTCACCCCCAAGTATGGCAGCTTCAT...TCCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS TCA 90 bp CATCCATCATGTAGGCGTGGCTGGGGTTATCTGCAGAGTCTGCACTaGAGTCCATCAGCACCACCCCGCACACTGTCAGGAGGATGCCCC +
Preference number: 5 (lower is better)
Translates to: HPSCRRGWGYLQSLH*SPSAPPRTLSGGCP
Trigger: GGGGCATCCTCCTGACAGTGTGCGGGGTGGTGCTGATGGACTTCAGTGCAGACTCTGCAGATAACCCCAGCCACGCCTACATGATGGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS GCA 90 bp TACCGGGCCGCACACATCCATCATGTAGGCGTGGCTGGGGTTATCTaGAGAGTCTGCACTGAAGTCCATCAGCACCACCCCGCACACTGT +
Preference number: 5 (lower is better)
Translates to: YRAAHIHHVGVAGVI*RVCTEVHQHHPAHC
Trigger: ACAGTGTGCGGGGTGGTGCTGATGGACTTCAGTGCAGACTCTGCAGATAACCCCAGCCACGCCTACATGATGGATGTGTGCGGCCCGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS GCA 90 bp AGTAGGGCAGGGTGCAGAGCGTGGAAAACAGGATGCCATAGGTGGTaGAGAGGGACAGGACCACGTACAAGTTCCTGGAGAGGGTGGCCA +
Preference number: 5 (lower is better)
Translates to: SRAGCRAWKTGCHRW*RGTGPRTSSWRGWP
Trigger: TGGCCACCCTCTCCAGGAACTTGTACGTGGTCCTGTCCCTCTGCACCACCTATGGCATCCTGTTTTCCACGCTCTGCACCCTGCCCTACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS GCA 90 bp CGAGGAAGGACACGAGGCTGGAGAAGTACATCACACCATTGGCACTaGCAACAGCTGAGGTCAGGGGCCCCAGGACCAGAGAGACAAGGA +
Preference number: 5 (lower is better)
Translates to: RGRTRGWRSTSHHWH*QQLRSGAPGPERQG
Trigger: TCCTTGTCTCTCTGGTCCTGGGGCCCCTGACCTCAGCTGTTGGCAGTGCCAATGGTGTGATGTACTTCTCCAGCCTCGTGTCCTTCCTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp AACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGCCTCACATGTACTTCCTTCTCTaGGGGTGGCGTTTGAAGTTG +
Preference number: 5 (lower is better)
Translates to: NPGWWLTRGSSGSRGLPHMYFLL*GWRLKL
Trigger: CAACTTCAAACGCCACCCCAAGAGAAGGAAGTACAT...GTGAGGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp ACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGATGCCCCACTTGTGGTaGGTGGCTGTGTCAGCCAAG +
Preference number: 5 (lower is better)
Translates to: TRPRLSTLHDFPLHSGPGMPHLW*VAVSAK
Trigger: CTTGGCTGACACAGCCACCAACCACAAGTGGGGCAT...CCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp AACCCAGGCTGGTGGCTGACAAGAGGGTCCAGCGGGTCCAGGGGCTTGCCTCACAATGTTTGCGACCTGTaGGCTGAAGGTCACATTCCT +
Preference number: 5 (lower is better)
Translates to: NPGWWLTRGSSGSRGLPHNVCDL*AEGHIP
Trigger: AGGAATGTGACCTTCAGCCAACAGGTCGCAAACATT...GTGAGGCAAGCCCCTGGACCCGCTGGACCCTCTTGTCAGCCACCAGCCTGGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp GAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTTGTTGTGCCCCCATGCATCAACGTGTGCGGTGCCTTaGGGTCTCCCTGGAACACCA +
Preference number: 5 (lower is better)
Translates to: ESQAMVPAALNLLCPHASTCAVP*GLPGTP
Trigger: TGGTGTTCCAGGGAGACCCAAAGGCACCGCACACGT...TGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS TCA 90 bp GCTGGCGCTCCTCATCGGCTGCATCAACAGAAGGAATTTCGTAGGTaGCACACAGGGAAGAGTAGAGGCAGCCGAGGAAGGACACGAGGC +
Preference number: 5 (lower is better)
Translates to: AGAPHRLHQQKEFRR*HTGKSRGSRGRTRG
Trigger: GCCTCGTGTCCTTCCTCGGCTGCCTCTACTCTTCCCTGTGTGTCACCTACGAAATTCCTTCTGTTGATGCAGCCGATGAGGAGCGCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS GCA 90 bp GGTGACACCGCTGTTGTACTTCTGATATGCTTCCGACGTGTGCGGTaGCTTTGGGTCTCCCTGGAACACCACCTCGCCCATGAAGTCCGT +
Preference number: 5 (lower is better)
Translates to: GDTAVVLLICFRRVR*LWVSLEHHLAHEVR
Trigger: ACGGACTTCATGGGCGAGGTGGTGTTCCAGGGAGACCCAAAGGCACCGCACACGTCGGAAGCATATCAGAAGTACAACAGCGGTGTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 90 bp CTTGGGCATATTGTAGATGGTGGAACAGAGATGCCGCAGAGACAGTaGCTGCTCCGACTGCTCGCTGGAGCCCGTCAGCTCGCTCTCATA +
Preference number: 5 (lower is better)
Translates to: LGHIVDGGTEMPQRQ*LLRLLAGARQLALI
Trigger: TATGAGAGCGAGCTGACGGGCTCCAGCGAGCAGTCGGAGCAGCCACTGTCTCTGCGGCATCTCTGTTCCACCATCTACAATATGCCCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp CCAGCGGGTCCAGGGGCTTGCCTCACAGACTGTGTGATCTACAGAACCTACCTGTGGCGTTTGAAGTTGTaGGCCCGGTGGCTGATGTGT +
Preference number: 5 (lower is better)
Translates to: PAGPGACLTDCVIYRTYLWRLKL*ARWLMC
Trigger: ACACATCAGCCACCGGGCCAACAACTTCAAACGCCA...CAGGTAGGTTCTGTAGATCACACAGTCTGTGAGGCAAGCCCCTGGACCCGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS GCA 90 bp GCACACATCCATCATGTAGGCGTGGCTGGGGTTATCTGCAGAGTCTaGACTGAAGTCCATCAGCACCACCCCGCACACTGTCAGGAGGAT +
Preference number: 5 (lower is better)
Translates to: AHIHHVGVAGVICRV*TEVHQHHPAHCQED
Trigger: ATCCTCCTGACAGTGTGCGGGGTGGTGCTGATGGACTTCAGTGCAGACTCTGCAGATAACCCCAGCCACGCCTACATGATGGATGTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp GAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTTGTTGTGCCCCCATGCATCATGGCGTTTGAAGTTGTaGGCCCGGTGGCTGATGTGT +
Preference number: 5 (lower is better)
Translates to: ESQAMVPAALNLLCPHASWRLKL*ARWLMC
Trigger: ACACATCAGCCACCGGGCCAACAACTTCAAACGCCA...TGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp CATAGTGGGCCGGGGACCAAGCTTTCAGACCCAAACTATACAGCAAGTGGATGGGGGTGGCGTTTGAAGTaGTTGGCCCGGTGGCTGATG +
Preference number: 5 (lower is better)
Translates to: HSGPGTKLSDPNYTASGWGWRLK*LARWLM
Trigger: CATCAGCCACCGGGCCAACAACTTCAAACGCCACCC...CCATCCACTTGCTGTATAGTTTGGGTCTGAAAGCTTGGTCCCCGGCCCACTATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp GGTTGGTCACACATGCTTATAGTCCAGCACCAAGAGAGTGGAGGAGGCAGGAGAGGGTGGCGTTTGAAGTaGTTGGCCCGGTGGCTGATG +
Preference number: 5 (lower is better)
Translates to: GWSHMLIVQHQESGGGRRGWRLK*LARWLM
Trigger: CATCAGCCACCGGGCCAACAACTTCAAACGCCACCC...TCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp CTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGAGTCTCCTTCCAAACCTaGAGGTACATCGGTCACTCC +
Preference number: 5 (lower is better)
Translates to: LGHAFQHSMTSHCIVGRGVSFQT*RYIGHS
Trigger: GGAGTGACCGATGTACCTCAAGGTTTGGAAGGAGAC...TCCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp GGTTGGTCACACATGCTTATAGTCCAGCACCAAGAGAGTGGAGGAGGCAGGAGAATGAAGCTGCCATACTaGGGGGTGAGCGGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: GWSHMLIVQHQESGGGRRMKLPY*GVSGLG
Trigger: ACCCAGCCCGCTCACCCCCAAGTATGGCAGCTTCAT...TCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp ACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGGGGATGATGCGAACTCATaGATGCCTGTGAGGGAGCTG +
Preference number: 5 (lower is better)
Translates to: TRPRLSTLHDFPLHSGPGDDANS*MPVREL
Trigger: CAGCTCCCTCACAGGCATCAATGAGTTCGCATCATC...CCCCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS TCA 90 bp CCCTATGGCCAGGACAAGAATGAAAGGGCGTCTCCTTCCAAACCTTaGGGTACATCGGTCACTCCAGGCACCCAACAGAGGCTGCAGCAA +
Preference number: 5 (lower is better)
Translates to: PYGQDKNERASPSKP*GTSVTPGTQQRLQQ
Trigger: TTGCTGCAGCCTCTGTTGGGTGCCTGGAGTGACCGATGTACCTCAAGGTTTGGAAGGAGACGCCCTTTCATTCTTGTCCTGGCCATAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp CCACTAGGCCACGCCTTTCAACACTCCATGACTTCCCACTGCATAGTGGGCCGGAAGTACATCACACCATaGGCACTGCCAACAGCTGAG +
Preference number: 5 (lower is better)
Translates to: PLGHAFQHSMTSHCIVGRKYITP*ALPTAE
Trigger: CTCAGCTGTTGGCAGTGCCAATGGTGTGATGTACTT...CCGGCCCACTATGCAGTGGGAAGTCATGGAGTGTTGAAAGGCGTGGCCTAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp GAGTCCCAGGCCATGGTCCCTGCTGCATTGAACTTGTTGTGCCCCCATGCATCAAGCACGCTGTCTATGTaGGAGGTGCCAAAGGATGAT +
Preference number: 5 (lower is better)
Translates to: ESQAMVPAALNLLCPHASSTLSM*EVPKDD
Trigger: ATCATCCTTTGGCACCTCCAACATAGACAGCGTGCT...TGATGCATGGGGGCACAACAAGTTCAATGCAGCAGGGACCATGGCCTGGGACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp TGCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCATGTACTTCCTTCTCTaGGGGTGGCGTTTGAAGTTG +
Preference number: 5 (lower is better)
Translates to: CQGLWFLSGQPTADHLQVMYFLL*GWRLKL
Trigger: CAACTTCAAACGCCACCCCAAGAGAAGGAAGTACAT...GACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp TTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACTCGCTCCGAGGCCCGTGGCTTaGAGGTGTCCAGAGAGCCTA +
Preference number: 5 (lower is better)
Translates to: FIEFSRWVLMAPADFKLAPRPVA*RCPESL
Trigger: TAGGCTCTCTGGACACCTCAAAGCCACGGGCCTCGG...AGCGAGTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp TGCCAAGGCCTTTGGTTTCTCAGTGGCCAGCCCACAGCTGACCACCTTCAAGTCAATGTTTGCGACCTGTaGGCTGAAGGTCACATTCCT +
Preference number: 5 (lower is better)
Translates to: CQGLWFLSGQPTADHLQVNVCDL*AEGHIP
Trigger: AGGAATGTGACCTTCAGCCAACAGGTCGCAAACATT...GACTTGAAGGTGGTCAGCTGTGGGCTGGCCACTGAGAAACCAAAGGCCTTGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp AGGAACCCTTTCCCCAGTGTCCCCGTTCAGAGTGGGAAGTCACCTGGATGTAGCAACAGAATGCAGCCATaGAAGAGCAGTTCCCAAAAG +
Preference number: 5 (lower is better)
Translates to: RNPFPSVPVQSGKSPGCSNRMQP*KSSSQK
Trigger: CTTTTGGGAACTGCTCTTCAATGGCTGCATTCTGTT...GCTACATCCAGGTGACTTCCCACTCTGAACGGGGACACTGGGGAAAGGGTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp TTTATTGAGTTCTCAAGATGGGTTCTCATGGCCCCAGCTGACTTCAAACTCGCTGTCTGGCAGGCCCATTaGCAGGAGTACCGGAGTCAC +
Preference number: 5 (lower is better)
Translates to: FIEFSRWVLMAPADFKLAVWQAH*QEYRSH
Trigger: GTGACTCCGGTACTCCTGCAAATGGGCCTGCCAGAC...AGCGAGTTTGAAGTCAGCTGGGGCCATGAGAACCCATCTTGAGAACTCAATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp GGTTGGTCACACATGCTTATAGTCCAGCACCAAGAGAGTGGAGGAGGCAGGAGAAGCACGCTGTCTATGTaGGAGGTGCCAAAGGATGAT +
Preference number: 5 (lower is better)
Translates to: GWSHMLIVQHQESGGGRRSTLSM*EVPKDD
Trigger: ATCATCCTTTGGCACCTCCAACATAGACAGCGTGCT...TCTCCTGCCTCCTCCACTCTCTTGGTGCTGGACTATAAGCATGTGTGACCAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS TCA 90 bp GAAACAGTCAATGAGCACGCTGTCTATGTTGGAGGTGCCAAAGGATaGTGCGAACTCATTGATGCCTGTGAGGGAGCTGTCCCTGCTGAT +
Preference number: 5 (lower is better)
Translates to: ETVNEHAVYVGGAKG*CELIDACEGAVPAD
Trigger: ATCAGCAGGGACAGCTCCCTCACAGGCATCAATGAGTTCGCATCATCCTTTGGCACCTCCAACATAGACAGCGTGCTCATTGACTGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp AAAGATTTATTTTCCTTTGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATCCGAGGCCCGTGGCTTaGAGGTGTCCAGAGAGCCTA +
Preference number: 5 (lower is better)
Translates to: KDLFSFVILSPRPWSLLHPRPVA*RCPESL
Trigger: TAGGCTCTCTGGACACCTCAAAGCCACGGGCCTCGG...ATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACAAAGGAAAATAAATCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp AAGATTGCTGCTGTTGTTTATTTAGCCCGTATTTACATCCCACTAGAAGCCTGGGTCTGGCAGGCCCATTaGCAGGAGTACCGGAGTCAC +
Preference number: 5 (lower is better)
Translates to: KIAAVVYLARIYIPLEAWVWQAH*QEYRSH
Trigger: GTGACTCCGGTACTCCTGCAAATGGGCCTGCCAGAC...CCAGGCTTCTAGTGGGATGTAAATACGGGCTAAATAAACAACAGCAGCAATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS-3UTR CAA 90 bp CACACACACACACACACCAATAGTAAAGTAGTATCTGGGCCGAATAAAACAACCGTCTCCTTCCAAACCTaGAGGTACATCGGTCACTCC +
Preference number: 5 (lower is better)
Translates to: HTHTHTNSKVVSGPNKTTVSFQT*RYIGHS
Trigger: GGAGTGACCGATGTACCTCAAGGTTTGGAAGGAGAC...GGTTGTTTTATTCGGCCCAGATACTACTTTACTATTGGTGTGTGTGTGTGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117997.2
CDS-3UTR CAA 90 bp AAAGATTTATTTTCCTTTGTTATCTTGAGTCCCAGGCCATGGTCCCTGCTGCATAACAGAATGCAGCCATaGAAGAGCAGTTCCCAAAAG +
Preference number: 5 (lower is better)
Translates to: KDLFSFVILSPRPWSLLHNRMQP*KSSSQK
Trigger: CTTTTGGGAACTGCTCTTCAATGGCTGCATTCTGTT...ATGCAGCAGGGACCATGGCCTGGGACTCAAGATAACAAAGGAAAATAAATCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS TCA 72 bp CCAACCCGGTCCCCAGGCCGAAGGCGAGGTAGGCGATaGAGTAGAGGGTGCGGACGCTCAGACACTCCTCCA +
Preference number: 6 (lower is better)
Translates to: PTRSPGRRRGRR*SRGCGRSDTPP
Trigger: TGGAGGAGTGTCTGAGCGTCCGCACCCTCTACTTCATCGCCTACCTCGCCTTCGGCCTGGGGACCGGGTTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp AGAGGGACAGGACCACGTACAAGTTCCTGGAGAGGGTaGCCAACCCGGTCCCCAGGCCGAAGGCGAGGTAGG +
Preference number: 6 (lower is better)
Translates to: RGTGPRTSSWRG*PTRSPGRRRGR
Trigger: CCTACCTCGCCTTCGGCCTGGGGACCGGGTTGGCCACCCTCTCCAGGAACTTGTACGTGGTCCTGTCCCTCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp AGGTGGTGCAGAGGGACAGGACCACGTACAAGTTCCTaGAGAGGGTGGCCAACCCGGTCCCCAGGCCGAAGG +
Preference number: 6 (lower is better)
Translates to: RWCRGTGPRTSS*RGWPTRSPGRR
Trigger: CCTTCGGCCTGGGGACCGGGTTGGCCACCCTCTCCAGGAACTTGTACGTGGTCCTGTCCCTCTGCACCACCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS GCA 72 bp CCAGGGCCCTCCCGAAGCTGGTCTTGTCCCAATGGATaGCTCCGACCACATAGCCAAACCCGCCTCCAAGAC +
Preference number: 6 (lower is better)
Translates to: PGPSRSWSCPNG*LRPHSQTRLQD
Trigger: GTCTTGGAGGCGGGTTTGGCTATGTGGTCGGAGGCATCCATTGGGACAAGACCAGCTTCGGGAGGGCCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp CCCCGCACACTGTCAGGAGGATGCCCCACTTGTGGTTaGTGGCTGTGTCAGCCAAGGCCATGCCAATGTCCC +
Preference number: 6 (lower is better)
Translates to: PRTLSGGCPTCG*WLCQPRPCQCP
Trigger: GGGACATTGGCATGGCCTTGGCTGACACAGCCACCAACCACAAGTGGGGCATCCTCCTGACAGTGTGCGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CAA 72 bp GGTGGGGGCGGAGAGGGCCGAATGTACTTCCTTCTCTaGGGGTGGCGTTTGAAGTTGTTGGCCCGGTGGCTG +
Preference number: 6 (lower is better)
Translates to: GGGGEGRMYFLL*GWRLKLLARWL
Trigger: CAGCCACCGGGCCAACAACTTCAAACGCCACCCCAAGAGAAGGAAGTACATTCGGCCCTCTCCGCCCCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CAA 90 bp GGGGGCGGAGAGGGCCGAATGTACTTCCTTCTCTTGGGGTGGCGTTaGAAGTTGTTGGCCCGGTGGCTGATGTGTCCTGTCACGGACCCT +
Preference number: 6 (lower is better)
Translates to: GGGEGRMYFLLLGWR*KLLARWLMCPVTDP
Trigger: AGGGTCCGTGACAGGACACATCAGCCACCGGGCCAACAACTTCAAACGCCACCCCAAGAGAAGGAAGTACATTCGGCCCTCTCCGCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS TCA 72 bp CGACCACATAGCCAAACCCGCCTCCAAGACCCGCCATaGGGGCATGGATGTTCAGGCCTCGGTCCTGGTCTA +
Preference number: 6 (lower is better)
Translates to: RPHSQTRLQDPP*GHGCSGLGPGL
Trigger: TAGACCAGGACCGAGGCCTGAACATCCATGCCCTCATGGCGGGTCTTGGAGGCGGGTTTGGCTATGTGGTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp ACCACCCCGCACACTGTCAGGAGGATGCCCCACTTGTaGTTGGTGGCTGTGTCAGCCAAGGCCATGCCAATG +
Preference number: 6 (lower is better)
Translates to: TTPHTVRRMPHL*LVAVSAKAMPM
Trigger: CATTGGCATGGCCTTGGCTGACACAGCCACCAACCACAAGTGGGGCATCCTCCTGACAGTGTGCGGGGTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp GATGCCGCAGAGACAGTGGCTGCTCCGACTGCTCGCTaGAGCCCGTCAGCTCGCTCTCATATTTCACACCGT +
Preference number: 6 (lower is better)
Translates to: DAAETVAAPTAR*SPSARSHISHR
Trigger: ACGGTGTGAAATATGAGAGCGAGCTGACGGGCTCCAGCGAGCAGTCGGAGCAGCCACTGTCTCTGCGGCATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS GCA 72 bp GGGAGTAGGGCAGGGTGCAGAGCGTGGAAAACAGGATaGCATAGGTGGTGCAGAGGGACAGGACCACGTACA +
Preference number: 6 (lower is better)
Translates to: GSRAGCRAWKTG*HRWCRGTGPRT
Trigger: TGTACGTGGTCCTGTCCCTCTGCACCACCTATGGCATCCTGTTTTCCACGCTCTGCACCCTGCCCTACTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS GCA 72 bp ACACGAGGCTGGAGAAGTACATCACACCATTGGCACTaGCAACAGCTGAGGTCAGGGGCCCCAGGACCAGAG +
Preference number: 6 (lower is better)
Translates to: TRGWRSTSHHWH*QQLRSGAPGPE
Trigger: CTCTGGTCCTGGGGCCCCTGACCTCAGCTGTTGGCAGTGCCAATGGTGTGATGTACTTCTCCAGCCTCGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS CCA 72 bp CGCACACTGTCAGGAGGATGCCCCACTTGTGGTTGGTaGCTGTGTCAGCCAAGGCCATGCCAATGTCCCTTC +
Preference number: 6 (lower is better)
Translates to: RTLSGGCPTCGW*LCQPRPCQCPF
Trigger: GAAGGGACATTGGCATGGCCTTGGCTGACACAGCCACCAACCACAAGTGGGGCATCCTCCTGACAGTGTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp ATTGTAGATGGTGGAACAGAGATGCCGCAGAGACAGTaGCTGCTCCGACTGCTCGCTGGAGCCCGTCAGCTC +
Preference number: 6 (lower is better)
Translates to: IVDGGTEMPQRQ*LLRLLAGARQL
Trigger: GAGCTGACGGGCTCCAGCGAGCAGTCGGAGCAGCCACTGTCTCTGCGGCATCTCTGTTCCACCATCTACAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CAA 72 bp TCTGGGGCCTCTTCAGGATCCCCGAGGCCCGTGGCTTaGAGGTGTCCAGAGAGCCTACTCTTAGCACATCTC +
Preference number: 6 (lower is better)
Translates to: SGASSGSPRPVA*RCPESLLLAHL
Trigger: GAGATGTGCTAAGAGTAGGCTCTCTGGACACCTCAAAGCCACGGGCCTCGGGGATCCTGAAGAGGCCCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CAA 90 bp ATCAGCACCACCCCGCACACTGTCAGGAGGATGCCCCACTTGTGGTaGGTGGCTGTGTCAGCCAAGGCCATGCCAATGTCCCTTCCATTG +
Preference number: 6 (lower is better)
Translates to: ISTTPHTVRRMPHLW*VAVSAKAMPMSLPL
Trigger: CAATGGAAGGGACATTGGCATGGCCTTGGCTGACACAGCCACCAACCACAAGTGGGGCATCCTCCTGACAGTGTGCGGGGTGGTGCTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CAA 90 bp AAGTCCATCAGCACCACCCCGCACACTGTCAGGAGGATGCCCCACTaGTGGTTGGTGGCTGTGTCAGCCAAGGCCATGCCAATGTCCCTT +
Preference number: 6 (lower is better)
Translates to: KSISTTPHTVRRMPH*WLVAVSAKAMPMSL
Trigger: AAGGGACATTGGCATGGCCTTGGCTGACACAGCCACCAACCACAAGTGGGGCATCCTCCTGACAGTGTGCGGGGTGGTGCTGATGGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS TCA 72 bp TGTAGGCGTGGCTGGGGTTATCTGCAGAGTCTGCACTaGAGTCCATCAGCACCACCCCGCACACTGTCAGGA +
Preference number: 6 (lower is better)
Translates to: CRRGWGYLQSLH*SPSAPPRTLSG
Trigger: TCCTGACAGTGTGCGGGGTGGTGCTGATGGACTTCAGTGCAGACTCTGCAGATAACCCCAGCCACGCCTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS TCA 72 bp CCCCAGCAGCCCATGGTGACACCGCTGTTGTACTTCTaGTATGCTTCCGACGTGTGCGGTGCCTTTGGGTCT +
Preference number: 6 (lower is better)
Translates to: PQQPMVTPLLYF*YASDVCGAFGS
Trigger: AGACCCAAAGGCACCGCACACGTCGGAAGCATATCAGAAGTACAACAGCGGTGTCACCATGGGCTGCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS GCA 72 bp GCAGCCCATGGTGACACCGCTGTTGTACTTCTGATATaGTTCCGACGTGTGCGGTGCCTTTGGGTCTCCCTG +
Preference number: 6 (lower is better)
Translates to: AAHGDTAVVLLI*FRRVRCLWVSL
Trigger: CAGGGAGACCCAAAGGCACCGCACACGTCGGAAGCATATCAGAAGTACAACAGCGGTGTCACCATGGGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp GCAGGGTGCAGAGCGTGGAAAACAGGATGCCATAGGTaGTGCAGAGGGACAGGACCACGTACAAGTTCCTGG +
Preference number: 6 (lower is better)
Translates to: AGCRAWKTGCHR*CRGTGPRTSSW
Trigger: CCAGGAACTTGTACGTGGTCCTGTCCCTCTGCACCACCTATGGCATCCTGTTTTCCACGCTCTGCACCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS GCA 72 bp GCACACATCCATCATGTAGGCGTGGCTGGGGTTATCTaGAGAGTCTGCACTGAAGTCCATCAGCACCACCCC +
Preference number: 6 (lower is better)
Translates to: AHIHHVGVAGVI*RVCTEVHQHHP
Trigger: GGGGTGGTGCTGATGGACTTCAGTGCAGACTCTGCAGATAACCCCAGCCACGCCTACATGATGGATGTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS GCA 72 bp GCTGTTGTACTTCTGATATGCTTCCGACGTGTGCGGTaGCTTTGGGTCTCCCTGGAACACCACCTCGCCCAT +
Preference number: 6 (lower is better)
Translates to: AVVLLICFRRVR*LWVSLEHHLAH
Trigger: ATGGGCGAGGTGGTGTTCCAGGGAGACCCAAAGGCACCGCACACGTCGGAAGCATATCAGAAGTACAACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS GCA 72 bp GGGTGCAGAGCGTGGAAAACAGGATGCCATAGGTGGTaGAGAGGGACAGGACCACGTACAAGTTCCTGGAGA +
Preference number: 6 (lower is better)
Translates to: GCRAWKTGCHRW*RGTGPRTSSWR
Trigger: TCTCCAGGAACTTGTACGTGGTCCTGTCCCTCTGCACCACCTATGGCATCCTGTTTTCCACGCTCTGCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp GCAGCCATTGAAGAGCAGTTCCCAAAAGGACCTCTGTaGGTGCAAGTCCCCAAAGTCCACCAGCTCGATGGG +
Preference number: 6 (lower is better)
Translates to: AAIEEQFPKGPL*VQVPKVHQLDG
Trigger: CCCATCGAGCTGGTGGACTTTGGGGACTTGCACCCACAGAGGTCCTTTTGGGAACTGCTCTTCAATGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp GTACTTCTGATATGCTTCCGACGTGTGCGGTGCCTTTaGGTCTCCCTGGAACACCACCTCGCCCATGAAGTC +
Preference number: 6 (lower is better)
Translates to: VLLICFRRVRCL*VSLEHHLAHEV
Trigger: GACTTCATGGGCGAGGTGGTGTTCCAGGGAGACCCAAAGGCACCGCACACGTCGGAAGCATATCAGAAGTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp AATCACAGAGCAGGGAGTAGGGCAGGGTGCAGAGCGTaGAAAACAGGATGCCATAGGTGGTGCAGAGGGACA +
Preference number: 6 (lower is better)
Translates to: NHRAGSRAGCRA*KTGCHRWCRGT
Trigger: TGTCCCTCTGCACCACCTATGGCATCCTGTTTTCCACGCTCTGCACCCTGCCCTACTCCCTGCTCTGTGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CAA 72 bp GAGGGCCGAATGTACTTCCTTCTCTTGGGGTGGCGTTaGAAGTTGTTGGCCCGGTGGCTGATGTGTCCTGTC +
Preference number: 6 (lower is better)
Translates to: EGRMYFLLLGWR*KLLARWLMCPV
Trigger: GACAGGACACATCAGCCACCGGGCCAACAACTTCAAACGCCACCCCAAGAGAAGGAAGTACATTCGGCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp CACAGAGATTGCGCAGCGCCTTGGGCATATTGTAGATaGTGGAACAGAGATGCCGCAGAGACAGTGGCTGCT +
Preference number: 6 (lower is better)
Translates to: HRDCAAPWAYCR*WNRDAAETVAA
Trigger: AGCAGCCACTGTCTCTGCGGCATCTCTGTTCCACCATCTACAATATGCCCAAGGCGCTGCGCAATCTCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp TGTCTACGCCCATGCCACGCCGTGTGCCATCCGCACTaGACCCTGCAAACTTCTTACTCTGGTAGTAATCAC +
Preference number: 6 (lower is better)
Translates to: CLRPCHAVCHPH*TLQTSYSGSNH
Trigger: GTGATTACTACCAGAGTAAGAAGTTTGCAGGGTCCAGTGCGGATGGCACACGGCGTGGCATGGGCGTAGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS CAA 72 bp ATGTACTTCCTTCTCTTGGGGTGGCGTTTGAAGTTGTaGGCCCGGTGGCTGATGTGTCCTGTCACGGACCCT +
Preference number: 6 (lower is better)
Translates to: MYFLLLGWRLKL*ARWLMCPVTDP
Trigger: AGGGTCCGTGACAGGACACATCAGCCACCGGGCCAACAACTTCAAACGCCACCCCAAGAGAAGGAAGTACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CAA 72 bp CGAATGTACTTCCTTCTCTTGGGGTGGCGTTTGAAGTaGTTGGCCCGGTGGCTGATGTGTCCTGTCACGGAC +
Preference number: 6 (lower is better)
Translates to: RMYFLLLGWRLK*LARWLMCPVTD
Trigger: GTCCGTGACAGGACACATCAGCCACCGGGCCAACAACTTCAAACGCCACCCCAAGAGAAGGAAGTACATTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS TCA 72 bp CAGGACAAGAATGAAAGGGCGTCTCCTTCCAAACCTTaGGGTACATCGGTCACTCCAGGCACCCAACAGAGG +
Preference number: 6 (lower is better)
Translates to: QDKNERASPSKP*GTSVTPGTQQR
Trigger: CCTCTGTTGGGTGCCTGGAGTGACCGATGTACCTCAAGGTTTGGAAGGAGACGCCCTTTCATTCTTGTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS TCA 72 bp AAAGGCCCAGCAGTGCCCCTATGGCCAGGACAAGAATaGAAGGGCGTCTCCTTCCAAACCTTGAGGTACATC +
Preference number: 6 (lower is better)
Translates to: KGPAVPLWPGQE*KGVSFQTLRYI
Trigger: GATGTACCTCAAGGTTTGGAAGGAGACGCCCTTTCATTCTTGTCCTGGCCATAGGGGCACTGCTGGGCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS GCA 72 bp GACATTCAACAGGAGGGGCTGGCGCTCCTCATCGGCTaGATCAACAGAAGGAATTTCGTAGGTGACACACAG +
Preference number: 6 (lower is better)
Translates to: DIQQEGLALLIG*INRRNFVGDTQ
Trigger: CTGTGTGTCACCTACGAAATTCCTTCTGTTGATGCAGCCGATGAGGAGCGCCAGCCCCTCCTGTTGAATGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037827.10
CDS CAA 90 bp AGCACGCTGTCTATGTTGGAGGTGCCAAAGGATGATGCGAACTCATaGATGCCTGTGAGGGAGCTGTCCCTGCTGATGAAGCTGCCATAC +
Preference number: 6 (lower is better)
Translates to: STLSMLEVPKDDANS*MPVRELSLLMKLPY
Trigger: GTATGGCAGCTTCATCAGCAGGGACAGCTCCCTCACAGGCATCAATGAGTTCGCATCATCCTTTGGCACCTCCAACATAGACAGCGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS TCA 72 bp GCATGCCCTCAAATGAGAGCCACCCCAGAAAGTGATTaGCACAGAGATTGCGCAGCGCCTTGGGCATATTGT +
Preference number: 6 (lower is better)
Translates to: ACPQMRATPESD*HRDCAAPWAYC
Trigger: ACAATATGCCCAAGGCGCTGCGCAATCTCTGTGTCAATCACTTTCTGGGGTGGCTCTCATTTGAGGGCATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CAA 90 bp TTGTCATGGCCCGCTGTGAAACAGTCAATGAGCACGCTGTCTATGTaGGAGGTGCCAAAGGATGATGCGAACTCATTGATGCCTGTGAGG +
Preference number: 6 (lower is better)
Translates to: LSWPAVKQSMSTLSM*EVPKDDANSLMPVR
Trigger: CCTCACAGGCATCAATGAGTTCGCATCATCCTTTGGCACCTCCAACATAGACAGCGTGCTCATTGACTGTTTCACAGCGGGCCATGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS TCA 72 bp AATGAGCACGCTGTCTATGTTGGAGGTGCCAAAGGATaGTGCGAACTCATTGATGCCTGTGAGGGAGCTGTC +
Preference number: 6 (lower is better)
Translates to: NEHAVYVGGAKG*CELIDACEGAV
Trigger: GACAGCTCCCTCACAGGCATCAATGAGTTCGCATCATCCTTTGGCACCTCCAACATAGACAGCGTGCTCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS TCA 72 bp TCACACCGTTCAGGAGAATGTTTGCGACCTGTTGGCTaGAGGTCACATTCCTTCTTCTGCTGGTTTCAGGGC +
Preference number: 6 (lower is better)
Translates to: SHRSGECLRPVG*RSHSFFCWFQG
Trigger: GCCCTGAAACCAGCAGAAGAAGGAATGTGACCTTCAGCCAACAGGTCGCAAACATTCTCCTGAACGGTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CAA 72 bp TCTATGTTGGAGGTGCCAAAGGATGATGCGAACTCATaGATGCCTGTGAGGGAGCTGTCCCTGCTGATGAAG +
Preference number: 6 (lower is better)
Translates to: SMLEVPKDDANS*MPVRELSLLMK
Trigger: CTTCATCAGCAGGGACAGCTCCCTCACAGGCATCAATGAGTTCGCATCATCCTTTGGCACCTCCAACATAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CAA 72 bp CCCGCTGTGAAACAGTCAATGAGCACGCTGTCTATGTaGGAGGTGCCAAAGGATGATGCGAACTCATTGATG +
Preference number: 6 (lower is better)
Translates to: PAVKQSMSTLSM*EVPKDDANSLM
Trigger: CATCAATGAGTTCGCATCATCCTTTGGCACCTCCAACATAGACAGCGTGCTCATTGACTGTTTCACAGCGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS TCA 72 bp CATGAAGTCCGTGTAAAAGAGCAGCATGCCCTCAAATaGGAGCCACCCCAGAAAGTGATTGACACAGAGATT +
Preference number: 6 (lower is better)
Translates to: HEVRVKEQHALK*EPPQKVIDTEI
Trigger: AATCTCTGTGTCAATCACTTTCTGGGGTGGCTCTCATTTGAGGGCATGCTGCTCTTTTACACGGACTTCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CCA 72 bp TATTTCACACCGTTCAGGAGAATGTTTGCGACCTGTTaGCTGAAGGTCACATTCCTTCTTCTGCTGGTTTCA +
Preference number: 6 (lower is better)
Translates to: YFTPFRRMFATC*LKVTFLLLLVS
Trigger: TGAAACCAGCAGAAGAAGGAATGTGACCTTCAGCCAACAGGTCGCAAACATTCTCCTGAACGGTGTGAAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2
CDS CAA 72 bp ATATTTCACACCGTTCAGGAGAATGTTTGCGACCTGTaGGCTGAAGGTCACATTCCTTCTTCTGCTGGTTTC +
Preference number: 6 (lower is better)
Translates to: IFHTVQENVCDL*AEGHIPSSAGF
Trigger: GAAACCAGCAGAAGAAGGAATGTGACCTTCAGCCAACAGGTCGCAAACATTCTCCTGAACGGTGTGAAATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037827.10
ENSMUST00000117997.2