Pregenerated sensors for SLC39A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052310Ensembl transcript IDs: ENSMUST00000015467.9
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTCAGCACTGTGCTTTCAAAAAGGGGGCAGGTGAGCAATACATGTaGTACACACCTTTAATCCCAGTGCTCAGGAGGCAGAGGCAGACT | + |
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Preference number: 1 (lower is better) Translates to: PQHCAFKKGAGEQYM*YTPLIPVLRRQRQT Trigger: AGTCTGCCTCTGCCTCCTGAGCACTGGGATTAAAGGTGTGTAGCACATGTATTGCTCACCTGCCCCCTTTTTGAAAGCACAGTGCTGAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR CCA 90 bp | CTAACTCTCAGTTCTTCTGTCAGCTTGTCTCTGAGATGTACTGCCTaGCCTCTGACTGTAGCAGTCTGCCTCCTTCTAATGTCCCTGACC | + |
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Preference number: 1 (lower is better) Translates to: LTLSSSVSLSLRCTA*PLTVAVCLLLMSLT Trigger: GGTCAGGGACATTAGAAGGAGGCAGACTGCTACAGTCAGAGGCCAGGCAGTACATCTCAGAGACAAGCTGACAGAAGAACTGAGAGTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR TCA 90 bp | GTGAGTTCCAGGACAGCCAAGGCTACACAGAGCAACCCAAAAAGGTaGGGACAGGAGAGGCCAGATAAATTACGAAAACTGGCAGAGAGA | + |
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Preference number: 1 (lower is better) Translates to: VSSRTAKATQSNPKR*GQERPDKLRKLAER Trigger: TCTCTCTGCCAGTTTTCGTAATTTATCTGGCCTCTCCTGTCCTCACCTTTTTGGGTTGCTCTGTGTAGCCTTGGCTGTCCTGGAACTCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR GCA 90 bp | ATGCCTAACTCTCAGTTCTTCTGTCAGCTTGTCTCTGAGATGTACTaGCTGGCCTCTGACTGTAGCAGTCTGCCTCCTTCTAATGTCCCT | + |
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Preference number: 1 (lower is better) Translates to: MPNSQFFCQLVSEMY*LASDCSSLPPSNVP Trigger: AGGGACATTAGAAGGAGGCAGACTGCTACAGTCAGAGGCCAGGCAGTACATCTCAGAGACAAGCTGACAGAAGAACTGAGAGTTAGGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR CCA 90 bp | GGGAAGAAAGGAGGAGGAACCATTTCAGCCATCAGAGTGGTGAGATaGGCTAGAACCAACAGGATACTGGCTTTGACTTACAGCCTCTGT | + |
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Preference number: 1 (lower is better) Translates to: GKKGGGTISAIRVVR*ARTNRILALTYSLC Trigger: ACAGAGGCTGTAAGTCAAAGCCAGTATCCTGTTGGTTCTAGCCCATCTCACCACTCTGATGGCTGAAATGGTTCCTCCTCCTTTCTTCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR GCA 90 bp | GGCTTTGACTTACAGCCTCTGTATCTTTATCGCAAAGAGGCTGGATaGCTAACTCTCAGTTCTTCTGTCAGCTTGTCTCTGAGATGTACT | + |
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Preference number: 1 (lower is better) Translates to: GFDLQPLYLYRKEAG*LTLSSSVSLSLRCT Trigger: AGTACATCTCAGAGACAAGCTGACAGAAGAACTGAGAGTTAGGCATCCAGCCTCTTTGCGATAAAGATACAGAGGCTGTAAGTCAAAGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR-3UTR TCA 90 bp | GCACCTCAGCACTGTGCTTTCAAAAAGGGGGCAGGTGAGCAATACATGTGCTACAGCAACCCAAAAAGGTaGGGACAGGAGAGGCCAGAT | + |
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Preference number: 2 (lower is better) Translates to: APQHCAFKKGAGEQYMCYSNPKR*GQERPD Trigger: ATCTGGCCTCTCCTGTCCTCACCTTTTTGGGTTGCT...GTAGCACATGTATTGCTCACCTGCCCCCTTTTTGAAAGCACAGTGCTGAGGTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR CAA 90 bp | GCCATCAGAGTGGTGAGATGGGCTAGAACCAACAGGATACTGGCTTaGACTTACAGCCTCTGTATCTTTATCGCAAAGAGGCTGGATGCC | + |
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Preference number: 2 (lower is better) Translates to: AIRVVRWARTNRILA*TYSLCIFIAKRLDA Trigger: GGCATCCAGCCTCTTTGCGATAAAGATACAGAGGCTGTAAGTCAAAGCCAGTATCCTGTTGGTTCTAGCCCATCTCACCACTCTGATGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR-3UTR GCA 90 bp | AGTCTGTCTCCCTCCACCCCGGACTCCTCAGATATAAAGTTTTGGCAGGTTATTAGCACCTCAGCACTGTaGTTTCAAAAAGGGGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: SLSPSTPDSSDIKFWQVISTSAL*FQKGGR Trigger: CCTGCCCCCTTTTTGAAAGCACAGTGCTGAGGTGCT...AATAACCTGCCAAAACTTTATATCTGAGGAGTCCGGGGTGGAGGGAGACAGACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR-3UTR CCA 90 bp | CTCTCACTCCAGACCAGTTCAGCAAATATTTCTTCCCCACCCCAAACTATGGGGAACAAACCTAAAGGGTaGGTGGGTGGGTATTTGGCA | + |
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Preference number: 2 (lower is better) Translates to: LSLQTSSANISSPPQTMGNKPKG*VGGYLA Trigger: TGCCAAATACCCACCCACCCACCCTTTAGGTTTGTT...CCCCATAGTTTGGGGTGGGGAAGAAATATTTGCTGAACTGGTCTGGAGTGAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR-3UTR CCA 90 bp | CCACCATGTCCACTTTCTGTAGTGTCTGGTGTCAGTACCTACTTTTCTCTCACTAGAGGCAGAGACAGGTaGAGCTCTGTAAACTCAAGC | + |
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Preference number: 2 (lower is better) Translates to: PPCPLSVVSGVSTYFSLTRGRDR*SSVNSS Trigger: GCTTGAGTTTACAGAGCTCCACCTGTCTCTGCCTCT...AGTGAGAGAAAAGTAGGTACTGACACCAGACACTACAGAAAGTGGACATGGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR-3UTR TCA 90 bp | TGGTGTCAGTACCTACTTTTCTCTCACTCCAGACCAGTTCAGCAAATATTTCTTCTGTCAGCTTGTCTCTaGGATGTACTGCCTGGCCTC | + |
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Preference number: 2 (lower is better) Translates to: WCQYLLFSHSRPVQQIFLLSACL*DVLPGL Trigger: GAGGCCAGGCAGTACATCTCAGAGACAAGCTGACAG...AAGAAATATTTGCTGAACTGGTCTGGAGTGAGAGAAAAGTAGGTACTGACACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR-3UTR TCA 90 bp | TGGTGTCAGTACCTACTTTTCTCTCACTCCAGACCAGTTCAGCAAATATTTCTTCAGCCATCAGAGTGGTaGGATGGGCTAGAACCAACA | + |
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Preference number: 2 (lower is better) Translates to: WCQYLLFSHSRPVQQIFLQPSEW*DGLEPT Trigger: TGTTGGTTCTAGCCCATCTCACCACTCTGATGGCTG...AAGAAATATTTGCTGAACTGGTCTGGAGTGAGAGAAAAGTAGGTACTGACACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR-3UTR CCA 90 bp | GCACCTCAGCACTGTGCTTTCAAAAAGGGGGCAGGTGAGCAATACATGTGCTACATAAATTACGAAAACTaGCAGAGAGACCATTTGGCA | + |
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Preference number: 2 (lower is better) Translates to: APQHCAFKKGAGEQYMCYINYEN*QRDHLA Trigger: TGCCAAATGGTCTCTCTGCCAGTTTTCGTAATTTAT...GTAGCACATGTATTGCTCACCTGCCCCCTTTTTGAAAGCACAGTGCTGAGGTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR-3UTR CCA 90 bp | TGGACCACCATGTCCACTTTCTGTAGTGTCTGGTGTCAGTACCTACTTTTCTCTGGGTGGGTGGGTATTTaGCACTTTAACAACAGACTA | + |
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Preference number: 2 (lower is better) Translates to: WTTMSTFCSVWCQYLLFSGWVGI*HFNNRL Trigger: TAGTCTGTTGTTAAAGTGCCAAATACCCACCCACCC...AGAGAAAAGTAGGTACTGACACCAGACACTACAGAAAGTGGACATGGTGGTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR GCA 72 bp | CTGAGATGTACTGCCTGGCCTCTGACTGTAGCAGTCTaGCTCCTTCTAATGTCCCTGACCACGTCTGTAGTA | + |
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Preference number: 3 (lower is better) Translates to: LRCTAWPLTVAV*LLLMSLTTSVV Trigger: TACTACAGACGTGGTCAGGGACATTAGAAGGAGGCAGACTGCTACAGTCAGAGGCCAGGCAGTACATCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR GCA 72 bp | TCTCAGTTCTTCTGTCAGCTTGTCTCTGAGATGTACTaGCTGGCCTCTGACTGTAGCAGTCTGCCTCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: SQFFCQLVSEMY*LASDCSSLPPS Trigger: AGAAGGAGGCAGACTGCTACAGTCAGAGGCCAGGCAGTACATCTCAGAGACAAGCTGACAGAAGAACTGAGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR CCA 72 bp | AGTTCTTCTGTCAGCTTGTCTCTGAGATGTACTGCCTaGCCTCTGACTGTAGCAGTCTGCCTCCTTCTAATG | + |
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Preference number: 3 (lower is better) Translates to: SSSVSLSLRCTA*PLTVAVCLLLM Trigger: CATTAGAAGGAGGCAGACTGCTACAGTCAGAGGCCAGGCAGTACATCTCAGAGACAAGCTGACAGAAGAACT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR TCA 72 bp | AGGACAGCCAAGGCTACACAGAGCAACCCAAAAAGGTaGGGACAGGAGAGGCCAGATAAATTACGAAAACTG | + |
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Preference number: 3 (lower is better) Translates to: RTAKATQSNPKR*GQERPDKLRKL Trigger: CAGTTTTCGTAATTTATCTGGCCTCTCCTGTCCTCACCTTTTTGGGTTGCTCTGTGTAGCCTTGGCTGTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR-3UTR CAA 90 bp | CCACCATGTCCACTTTCTGTAGTGTCTGGTGTCAGTACCTACTTTTCTCTCACTGCTATCTCTTATTCTTaGGGTCTGGGGCTAGCCTCT | + |
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Preference number: 3 (lower is better) Translates to: PPCPLSVVSGVSTYFSLTAISYS*GLGLAS Trigger: AGAGGCTAGCCCCAGACCCAAAGAATAAGAGATAGC...AGTGAGAGAAAAGTAGGTACTGACACCAGACACTACAGAAAGTGGACATGGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR-3UTR CAA 90 bp | CCTCCTTCTAATGTCCCTGACCACGTCTGTAGTAACTTCGCTATCTCTTATTCTTCTATTTCCCACCAATaGAGAAGGGTAGGGAGGGAG | + |
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Preference number: 3 (lower is better) Translates to: PPSNVPDHVCSNFAISYSSISHQ*RRVGRE Trigger: CTCCCTCCCTACCCTTCTCAATTGGTGGGAAATAGA...AGAATAAGAGATAGCGAAGTTACTACAGACGTGGTCAGGGACATTAGAAGGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR CCA 90 bp | TGCCTAACTCTCAGTTCTTCTGTCAGCTTGTCTCTGAGATGTACTGCCTGGCCTGGAGTTCCGCCGGCCTaGGGGATCCCTGGTCCATCG | + |
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Preference number: 4 (lower is better) Translates to: CLTLSSSVSLSLRCTAWPGVPPA*GIPGPS Trigger: CGATGGACCAGGGATCCCCCAGGCCGGCGGAACTCC...AGGCCAGGCAGTACATCTCAGAGACAAGCTGACAGAAGAACTGAGAGTTAGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR TCA 90 bp | TGCCTAACTCTCAGTTCTTCTGTCAGCTTGTCTCTGAGATGTACTGCCTGGCCTACAAGCACGCAGGGCTaGGGGAGCTGCTGGAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: CLTLSSSVSLSLRCTAWPTSTQG*GSCWSS Trigger: GGAACTCCAGCAGCTCCCTCAGCCCTGCGTGCTTGT...AGGCCAGGCAGTACATCTCAGAGACAAGCTGACAGAAGAACTGAGAGTTAGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR CCA 90 bp | GTAGCAGTCTGCCTCCTTCTAATGTCCCTGACCACGTCTGTAGTAACTTCGCTAACAGATTGGGCCAGCTaGTGCAGAGGCCCAGCTGAC | + |
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Preference number: 4 (lower is better) Translates to: VAVCLLLMSLTTSVVTSLTDWAS*CRGPAD Trigger: GTCAGCTGGGCCTCTGCACCAGCTGGCCCAATCTGT...TAGCGAAGTTACTACAGACGTGGTCAGGGACATTAGAAGGAGGCAGACTGCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR GCA 90 bp | GAGATGTACTGCCTGGCCTCTGACTGTAGCAGTCTGCCTCCTTCTAATGTCCCTCAGGGACAGGCTGACTaGCAGAATGCCTTTGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: EMYCLASDCSSLPPSNVPQGQAD*QNAFVK Trigger: CTTCACAAAGGCATTCTGGCAGTCAGCCTGTCCCTG...AGGGACATTAGAAGGAGGCAGACTGCTACAGTCAGAGGCCAGGCAGTACATCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR CAA 72 bp | GAGGCTGGATGCCTAACTCTCAGTTCTTCTGTCAGCTaGTCTCTGAGATGTACTGCCTGGCCTCTGACTGTA | + |
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Preference number: 4 (lower is better) Translates to: EAGCLTLSSSVS*SLRCTAWPLTV Trigger: TACAGTCAGAGGCCAGGCAGTACATCTCAGAGACAAGCTGACAGAAGAACTGAGAGTTAGGCATCCAGCCTC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR TCA 90 bp | ATCCCTATATCTAAGAGAACTCTTTGGTCCTCACTACTTCCCTTCTCCACTTCTCTCCTGCGAAGCAGCTaGCGAGGCTCAGGGCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: IPISKRTLWSSLLPFSTSLLRSS*RGSGLS Trigger: AGAAAGCCCTGAGCCTCGTCAGCTGCTTCGCAGGAG...AGAAGTGGAGAAGGGAAGTAGTGAGGACCAAAGAGTTCTCTTAGATATAGGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR TCA 90 bp | TCTCTGCCCACTTCCATCTCATTATTCATAGTCCAAATGTCCCATCCCTATATCCCATCGTGCCAGTGCTaGGGCCCACCATTCACTGTG | + |
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Preference number: 4 (lower is better) Translates to: SLPTSISLFIVQMSHPYIPSCQC*GPPFTV Trigger: CACAGTGAATGGTGGGCCTCAGCACTGGCACGATGG...GATATAGGGATGGGACATTTGGACTATGAATAATGAGATGGAAGTGGGCAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR CCA 90 bp | TGGTGTCAGTACCTACTTTTCTCTCACTCCAGACCAGTTCAGCAAATATTTCTTCGATGCGACTGCTTCTaGGCGCCACACCAGGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: WCQYLLFSHSRPVQQIFLRCDCF*APHQEL Trigger: GAGCTCCTGGTGTGGCGCCCAGAAGCAGTCGCATCG...AAGAAATATTTGCTGAACTGGTCTGGAGTGAGAGAAAAGTAGGTACTGACACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR TCA 90 bp | ATGTCCACTTTCTGTAGTGTCTGGTGTCAGTACCTACTTTTCTCTCACTCCAGACAAAGAGAAGGCCAGTaGGCAGGGCAAAGCCTGCTA | + |
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Preference number: 4 (lower is better) Translates to: MSTFCSVWCQYLLFSHSRQREGQ*AGQSLL Trigger: TAGCAGGCTTTGCCCTGCTCACTGGCCTTCTCTTTG...TCTGGAGTGAGAGAAAAGTAGGTACTGACACCAGACACTACAGAAAGTGGACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR GCA 90 bp | CCTCCTTCTAATGTCCCTGACCACGTCTGTAGTAACTTCGCTATCTCTTATTCTCTGCACCCAACCCGATaGCCAGAGGTGTCATACATG | + |
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Preference number: 4 (lower is better) Translates to: PPSNVPDHVCSNFAISYSLHPTR*PEVSYM Trigger: CATGTATGACACCTCTGGGCATCGGGTTGGGTGCAG...AGAATAAGAGATAGCGAAGTTACTACAGACGTGGTCAGGGACATTAGAAGGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR TCA 90 bp | TGGACCACCATGTCCACTTTCTGTAGTGTCTGGTGTCAGTACCTACTTTTCTCTTTCATGGTTAGCACCTaGCCTTCGAAGCACACAGAC | + |
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Preference number: 4 (lower is better) Translates to: WTTMSTFCSVWCQYLLFSFMVST*PSKHTD Trigger: GTCTGTGTGCTTCGAAGGTCAGGTGCTAACCATGAA...AGAGAAAAGTAGGTACTGACACCAGACACTACAGAAAGTGGACATGGTGGTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR TCA 90 bp | TCTCTGCCCACTTCCATCTCATTATTCATAGTCCAAATGTCCCATCCCTATATCCAGAGGTGTCATACATaGGAAGAGGATCCCGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SLPTSISLFIVQMSHPYIQRCHT*EEDPAA Trigger: GGCTGCGGGATCCTCTTCTCATGTATGACACCTCTG...GATATAGGGATGGGACATTTGGACTATGAATAATGAGATGGAAGTGGGCAGAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR CCA 90 bp | CTTCTAATGTCCCTGACCACGTCTGTAGTAACTTCGCTATCTCTTATTCTTTGGCCAAGGCCTCATCTATaGCAGCCAGGTAGTCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: LLMSLTTSVVTSLSLILWPRPHL*QPGSQA Trigger: TGCCTGACTACCTGGCTGCCATAGATGAGGCCTTGG...CCAAAGAATAAGAGATAGCGAAGTTACTACAGACGTGGTCAGGGACATTAGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR CCA 90 bp | TGGACCACCATGTCCACTTTCTGTAGTGTCTGGTGTCAGTACCTACTTTTCTCTGAAGTGGCCAGTTCCTaGGGTAGAATTTCCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: WTTMSTFCSVWCQYLLFSEVASS*GRISRK Trigger: CTTCCTGGAAATTCTACCCCAGGAACTGGCCACTTC...AGAGAAAAGTAGGTACTGACACCAGACACTACAGAAAGTGGACATGGTGGTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR TCA 90 bp | TGGTGTCAGTACCTACTTTTCTCTCACTCCAGACCAGTTCAGCAAATATTTCTTCCTTGTAAGCCAGCGTaGTCTGCTCCATCACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: WCQYLLFSHSRPVQQIFLPCKPA*SAPSPG Trigger: TCCTGGTGATGGAGCAGATCACGCTGGCTTACAAGG...AAGAAATATTTGCTGAACTGGTCTGGAGTGAGAGAAAAGTAGGTACTGACACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR GCA 90 bp | ATCCCTATATCTAAGAGAACTCTTTGGTCCTCACTACTTCCCTTCTCCACTTCTCAAAAAGACTCCTCCTaGGAAGCAGCTGACGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: IPISKRTLWSSLLPFSTSQKDSS*EAADEA Trigger: AGCCTCGTCAGCTGCTTCGCAGGAGGAGTCTTTTTG...AGAAGTGGAGAAGGGAAGTAGTGAGGACCAAAGAGTTCTCTTAGATATAGGGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR GCA 90 bp | CCACCATGTCCACTTTCTGTAGTGTCTGGTGTCAGTACCTACTTTTCTCTCACTCCCTCAAATACTGAGTaGAAGGCTAAGGAGAAGACC | + |
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Preference number: 4 (lower is better) Translates to: PPCPLSVVSGVSTYFSLTPSNTE*KAKEKT Trigger: GGTCTTCTCCTTAGCCTTGCACTCAGTATTTGAGGG...AGTGAGAGAAAAGTAGGTACTGACACCAGACACTACAGAAAGTGGACATGGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| 3UTR CAA 72 bp | GTGGTGAGATGGGCTAGAACCAACAGGATACTGGCTTaGACTTACAGCCTCTGTATCTTTATCGCAAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: VVRWARTNRILA*TYSLCIFIAKR Trigger: CCTCTTTGCGATAAAGATACAGAGGCTGTAAGTCAAAGCCAGTATCCTGTTGGTTCTAGCCCATCTCACCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS TCA 90 bp | GGAGTTCCGCCGGCCTGGGGGATCCCTGGTCCATCGTGCCAGTGCTaGGGCCCACCATTCACTGTGCCCAGTAGAGCCCTTGTCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: GVPPAWGIPGPSCQC*GPPFTVPSRALVSS Trigger: GGAAGAGACAAGGGCTCTACTGGGCACAGTGAATGGTGGGCCTCAGCACTGGCACGATGGACCAGGGATCCCCCAGGCCGGCGGAACTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS GCA 90 bp | GGATCCCTGGTCCATCGTGCCAGTGCTGAGGCCCACCATTCACTGTaGCCAGTAGAGCCCTTGTCTCTTCCGGGTGGGGTGGACTGGTCT | + |
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Preference number: 5 (lower is better) Translates to: GSLVHRASAEAHHSL*PVEPLSLPGGVDWS Trigger: AGACCAGTCCACCCCACCCGGAAGAGACAAGGGCTCTACTGGGCACAGTGAATGGTGGGCCTCAGCACTGGCACGATGGACCAGGGATCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS GCA 90 bp | AGCAGCAGAGCTAGGCACAGCTCCATTGCCCGAGCCCTGTCTCGCTaGAACCCTACAGCCAGGCCCTCAAATACTGAGTGCAAGGCTAAG | + |
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Preference number: 5 (lower is better) Translates to: SSRARHSSIARALSR*NPTARPSNTECKAK Trigger: CTTAGCCTTGCACTCAGTATTTGAGGGCCTGGCTGTAGGGTTGCAGCGAGACAGGGCTCGGGCAATGGAGCTGTGCCTAGCTCTGCTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS CCA 90 bp | CAGCTGACGAGGCTCAGGGCTTTCTGGCCCGAGGCTGAAGCTTCATaGTTAGCACCTGACCTTCGAAGCACACAGACAGGTACCAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: QLTRLRAFWPEAEAS*LAPDLRSTQTGTRL Trigger: CAGCCTGGTACCTGTCTGTGTGCTTCGAAGGTCAGGTGCTAACCATGAAGCTTCAGCCTCGGGCCAGAAAGCCCTGAGCCTCGTCAGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS TCA 90 bp | TCTCTTCCGGGTGGGGTGGACTGGTCTGTTCCTTGTAAGCCAGCGTaGTCTGCTCCATCACCAGGACCAGGAAGAAACCCATGGCCAAGA | + |
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Preference number: 5 (lower is better) Translates to: SLPGGVDWSVPCKPA*SAPSPGPGRNPWPR Trigger: TCTTGGCCATGGGTTTCTTCCTGGTCCTGGTGATGGAGCAGATCACGCTGGCTTACAAGGAACAGACCAGTCCACCCCACCCGGAAGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS CCA 90 bp | AAAAAGACTCCTCCTGCGAAGCAGCTGACGAGGCTCAGGGCTTTCTaGCCCGAGGCTGAAGCTTCATGGTTAGCACCTGACCTTCGAAGC | + |
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Preference number: 5 (lower is better) Translates to: KKTPPAKQLTRLRAF*PEAEASWLAPDLRS Trigger: GCTTCGAAGGTCAGGTGCTAACCATGAAGCTTCAGCCTCGGGCCAGAAAGCCCTGAGCCTCGTCAGCTGCTTCGCAGGAGGAGTCTTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS-3UTR CAA 90 bp | CCACCATGTCCACTTTCTGTAGTGTCTGGTGTCAGTACCTACTTTTCTCTCACTCTAGGCACAGCTCCATaGCCCGAGCCCTGTCTCGCT | + |
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Preference number: 5 (lower is better) Translates to: PPCPLSVVSGVSTYFSLTLGTAP*PEPCLA Trigger: AGCGAGACAGGGCTCGGGCAATGGAGCTGTGCCTAG...AGTGAGAGAAAAGTAGGTACTGACACCAGACACTACAGAAAGTGGACATGGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS CCA 72 bp | GGGAGCTGCTGGAGTTCCGCCGGCCTGGGGGATCCCTaGTCCATCGTGCCAGTGCTGAGGCCCACCATTCAC | + |
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Preference number: 6 (lower is better) Translates to: GSCWSSAGLGDP*SIVPVLRPTIH Trigger: GTGAATGGTGGGCCTCAGCACTGGCACGATGGACCAGGGATCCCCCAGGCCGGCGGAACTCCAGCAGCTCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS TCA 72 bp | CCGGCCTGGGGGATCCCTGGTCCATCGTGCCAGTGCTaGGGCCCACCATTCACTGTGCCCAGTAGAGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: PAWGIPGPSCQC*GPPFTVPSRAL Trigger: AAGGGCTCTACTGGGCACAGTGAATGGTGGGCCTCAGCACTGGCACGATGGACCAGGGATCCCCCAGGCCGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS GCA 72 bp | CTTCACTTCCAGCCCTACTGGCACCGAGGGCTCCGATaGGACTGCTTCTGGGCGCCACACCAGGAGCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: LHFQPYWHRGLR*DCFWAPHQELW Trigger: CCAGAGCTCCTGGTGTGGCGCCCAGAAGCAGTCGCATCGGAGCCCTCGGTGCCAGTAGGGCTGGAAGTGAAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS GCA 72 bp | GTCCATCGTGCCAGTGCTGAGGCCCACCATTCACTGTaGCCAGTAGAGCCCTTGTCTCTTCCGGGTGGGGTG | + |
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Preference number: 6 (lower is better) Translates to: VHRASAEAHHSL*PVEPLSLPGGV Trigger: CACCCCACCCGGAAGAGACAAGGGCTCTACTGGGCACAGTGAATGGTGGGCCTCAGCACTGGCACGATGGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS GCA 72 bp | GCTAGGCACAGCTCCATTGCCCGAGCCCTGTCTCGCTaGAACCCTACAGCCAGGCCCTCAAATACTGAGTGC | + |
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Preference number: 6 (lower is better) Translates to: ARHSSIARALSR*NPTARPSNTEC Trigger: GCACTCAGTATTTGAGGGCCTGGCTGTAGGGTTGCAGCGAGACAGGGCTCGGGCAATGGAGCTGTGCCTAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS CCA 72 bp | CCTCCTGCGAAGCAGCTGACGAGGCTCAGGGCTTTCTaGCCCGAGGCTGAAGCTTCATGGTTAGCACCTGAC | + |
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Preference number: 6 (lower is better) Translates to: PPAKQLTRLRAF*PEAEASWLAPD Trigger: GTCAGGTGCTAACCATGAAGCTTCAGCCTCGGGCCAGAAAGCCCTGAGCCTCGTCAGCTGCTTCGCAGGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS CAA 72 bp | GCTGAGGCCCACCATTCACTGTGCCCAGTAGAGCCCTaGTCTCTTCCGGGTGGGGTGGACTGGTCTGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: AEAHHSLCPVEP*SLPGGVDWSVP Trigger: AGGAACAGACCAGTCCACCCCACCCGGAAGAGACAAGGGCTCTACTGGGCACAGTGAATGGTGGGCCTCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS CAA 90 bp | CGTGCCAGTGCTGAGGCCCACCATTCACTGTGCCCAGTAGAGCCCTaGTCTCTTCCGGGTGGGGTGGACTGGTCTGTTCCTTGTAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: RASAEAHHSLCPVEP*SLPGGVDWSVPCKP Trigger: TGGCTTACAAGGAACAGACCAGTCCACCCCACCCGGAAGAGACAAGGGCTCTACTGGGCACAGTGAATGGTGGGCCTCAGCACTGGCACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS CAA 90 bp | CTGCCAGAATGCCTTTGTGAAGCAGCAGAGCTAGGCACAGCTCCATaGCCCGAGCCCTGTCTCGCTGCAACCCTACAGCCAGGCCCTCAA | + |
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Preference number: 6 (lower is better) Translates to: LPECLCEAAELGTAP*PEPCLAATLQPGPQ Trigger: TTGAGGGCCTGGCTGTAGGGTTGCAGCGAGACAGGGCTCGGGCAATGGAGCTGTGCCTAGCTCTGCTGCTTCACAAAGGCATTCTGGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS TCA 72 bp | GGTGGGGTGGACTGGTCTGTTCCTTGTAAGCCAGCGTaGTCTGCTCCATCACCAGGACCAGGAAGAAACCCA | + |
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Preference number: 6 (lower is better) Translates to: GGVDWSVPCKPA*SAPSPGPGRNP Trigger: TGGGTTTCTTCCTGGTCCTGGTGATGGAGCAGATCACGCTGGCTTACAAGGAACAGACCAGTCCACCCCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS GCA 72 bp | CGCTGCAACCCTACAGCCAGGCCCTCAAATACTGAGTaGAAGGCTAAGGAGAAGACCAGGACACAAGCACGC | + |
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Preference number: 6 (lower is better) Translates to: RCNPTARPSNTE*KAKEKTRTQAR Trigger: GCGTGCTTGTGTCCTGGTCTTCTCCTTAGCCTTGCACTCAGTATTTGAGGGCCTGGCTGTAGGGTTGCAGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS CCA 72 bp | AGGCTCAGGGCTTTCTGGCCCGAGGCTGAAGCTTCATaGTTAGCACCTGACCTTCGAAGCACACAGACAGGT | + |
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Preference number: 6 (lower is better) Translates to: RLRAFWPEAEAS*LAPDLRSTQTG Trigger: ACCTGTCTGTGTGCTTCGAAGGTCAGGTGCTAACCATGAAGCTTCAGCCTCGGGCCAGAAAGCCCTGAGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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| CDS TCA 72 bp | AAACCCATGGCCAAGATGAACTCTTGCAAGGGGAACTaGAGCGTCACATGCAGGGCCTCCAAGGCCTCATCT | + |
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Preference number: 6 (lower is better) Translates to: KPMAKMNSCKGN*SVTCRASKASS Trigger: AGATGAGGCCTTGGAGGCCCTGCATGTGACGCTTCAGTTCCCCTTGCAAGAGTTCATCTTGGCCATGGGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015467.9 |
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