RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC38A4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022464

Ensembl transcript IDs: ENSMUST00000023101.10, ENSMUST00000166223.2, ENSMUST00000230086.2, ENSMUST00000230907.2, ENSMUST00000231039.2

Found 187 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGTGGGCGGAGTCTGAACTCCATCCCGTGTAAGCGTCCATGGATGTaGGCAATGTGGTTTTGGGTCATGTTGGTGCATTTATTCCTAACC +
Preference number: 1 (lower is better)
Translates to: SGRSLNSIPCKRPWM*AMWFWVMLVHLFLT
Trigger: GGTTAGGAATAAATGCACCAACATGACCCAAAACCACATTGCTCACATCCATGGACGCTTACACGGGATGGAGTTCAGACTCCGCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR GCA 90 bp CTTGCACAGCTGCTGCAAACACAACTCGGGCATCACACACTGCACTaGACGGCCTGGGTTAAAATGTGTGCCACAGAATTTTTAATGCAT +
Preference number: 1 (lower is better)
Translates to: LAQLLQTQLGHHTLH*TAWVKMCATEFLMH
Trigger: ATGCATTAAAAATTCTGTGGCACACATTTTAACCCAGGCCGTGCAGTGCAGTGTGTGATGCCCGAGTTGTGTTTGCAGCAGCTGTGCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR CCA 90 bp CTGCTGCAAACACAACTCGGGCATCACACACTGCACTGCACGGCCTaGGTTAAAATGTGTGCCACAGAATTTTTAATGCATCCTTCACCA +
Preference number: 1 (lower is better)
Translates to: LLQTQLGHHTLHCTA*VKMCATEFLMHPSP
Trigger: TGGTGAAGGATGCATTAAAAATTCTGTGGCACACATTTTAACCCAGGCCGTGCAGTGCAGTGTGTGATGCCCGAGTTGTGTTTGCAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR TCA 90 bp AGTGTGTCTCCACACGGACTGTGGTCTTCTGAAAATTACGAAGAGTaGGAACGGAAGACGAGAGGGGAAGCCTTGTTCAAAGACAAAGTG +
Preference number: 1 (lower is better)
Translates to: SVSPHGLWSSENYEE*ERKTRGEALFKDKV
Trigger: CACTTTGTCTTTGAACAAGGCTTCCCCTCTCGTCTTCCGTTCTCACTCTTCGTAATTTTCAGAAGACCACAGTCCGTGTGGAGACACACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR CCA 90 bp ACTGAACTATGCACAACTTTGACTTTAATTTTTAGATGTCTCCAATaGACAGATAAGTACCCATGGATTTTTGAGCCCACCAGCTTAATT +
Preference number: 1 (lower is better)
Translates to: TELCTTLTLIFRCLQ*TDKYPWIFEPTSLI
Trigger: AATTAAGCTGGTGGGCTCAAAAATCCATGGGTACTTATCTGTCCATTGGAGACATCTAAAAATTAAAGTCAAAGTTGTGCATAGTTCAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR CAA 90 bp AGGCTATTGTCTGCTGACCAACACACGCAGCCAACAGGCTTCAGCTaGCACAGCTGCTGCAAACACAACTCGGGCATCACACACTGCACT +
Preference number: 2 (lower is better)
Translates to: RLLSADQHTQPTGFS*HSCCKHNSGITHCT
Trigger: AGTGCAGTGTGTGATGCCCGAGTTGTGTTTGCAGCAGCTGTGCAAGCTGAAGCCTGTTGGCTGCGTGTGTTGGTCAGCAGACAATAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR GCA 90 bp GATGTTCTGAGAGTAGAATTACCTGTTAATCTGGGGGTGGAGAGAAGTGGAGTGTTCAGCTTGCACAGCTaGTGCAAACACAACTCGGGC +
Preference number: 2 (lower is better)
Translates to: DVLRVELPVNLGVERSGVFSLHS*CKHNSG
Trigger: GCCCGAGTTGTGTTTGCAGCAGCTGTGCAAGCTGAA...CACTCCACTTCTCTCCACCCCCAGATTAACAGGTAATTCTACTCTCAGAACATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR GCA 90 bp CTGTTGAAAAACTGCTTTGGTGTGACAGTACTATCACTACCTGTAGGATACTTGTTCAGCTTGCACAGCTaGTGCAAACACAACTCGGGC +
Preference number: 2 (lower is better)
Translates to: LLKNCFGVTVLSLPVGYLFSLHS*CKHNSG
Trigger: GCCCGAGTTGTGTTTGCAGCAGCTGTGCAAGCTGAA...CAAGTATCCTACAGGTAGTGATAGTACTGTCACACCAAAGCAGTTTTTCAACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR CCA 90 bp CTTCTGAAAATTACGAAGAGTGAGAACGGAAGACGAGAGGGGAAGCCTTGTTCAAATTACCTGTTAATCTaGGGGTGGAGAGAAGTGGAG +
Preference number: 2 (lower is better)
Translates to: LLKITKSENGRREGKPCSNYLLI*GWREVE
Trigger: CTCCACTTCTCTCCACCCCCAGATTAACAGGTAATT...TGAACAAGGCTTCCCCTCTCGTCTTCCGTTCTCACTCTTCGTAATTTTCAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR CCA 90 bp CTCCAATGGACAGATAAGTACCCATGGATTTTTGAGCCCACCAGCTTAATTCCCAATTACCTGTTAATCTaGGGGTGGAGAGAAGTGGAG +
Preference number: 2 (lower is better)
Translates to: LQWTDKYPWIFEPTSLIPNYLLI*GWREVE
Trigger: CTCCACTTCTCTCCACCCCCAGATTAACAGGTAATT...GGGAATTAAGCTGGTGGGCTCAAAAATCCATGGGTACTTATCTGTCCATTGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR CCA 90 bp AGTACTCTATACTGGCAACCGTCATTCATGATCCTCACAGGGACAGCTCCCAAGCTAGAAAAACGTCTTTaGAATCTTGCTAATTCCTCA +
Preference number: 2 (lower is better)
Translates to: STLYWQPSFMILTGTAPKLEKRL*NLANSS
Trigger: TGAGGAATTAGCAAGATTCCAAAGACGTTTTTCTAG...CTTGGGAGCTGTCCCTGTGAGGATCATGAATGACGGTTGCCAGTATAGAGTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR CCA 90 bp AGAGTGAGAACGGAAGACGAGAGGGGAAGCCTTGTTCAAAGACAAAGTGGAACACTAGAAAAACGTCTTTaGAATCTTGCTAATTCCTCA +
Preference number: 2 (lower is better)
Translates to: RVRTEDERGSLVQRQSGTLEKRL*NLANSS
Trigger: TGAGGAATTAGCAAGATTCCAAAGACGTTTTTCTAG...TGTTCCACTTTGTCTTTGAACAAGGCTTCCCCTCTCGTCTTCCGTTCTCACTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR CCA 90 bp GTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCCTAGAAAAACGTCTTTaGAATCTTGCTAATTCCTCA +
Preference number: 2 (lower is better)
Translates to: VCHRIFNASFTIPNKTIPLEKRL*NLANSS
Trigger: TGAGGAATTAGCAAGATTCCAAAGACGTTTTTCTAG...GGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
3UTR-3UTR GCA 90 bp TTGAAAAACTGCTTTGGTGTGACAGTACTATCACTACCTGTAGGATACTTGCATCAACGTTCTGATAACTaGAGAATGAGATTATGTACA +
Preference number: 2 (lower is better)
Translates to: LKNCFGVTVLSLPVGYLHQRSDN*RMRLCT
Trigger: TGTACATAATCTCATTCTGCAGTTATCAGAACGTTG...ATGCAAGTATCCTACAGGTAGTGATAGTACTGTCACACCAAAGCAGTTTTTCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR GCA 72 bp CACACGCAGCCAACAGGCTTCAGCTTGCACAGCTGCTaGAAACACAACTCGGGCATCACACACTGCACTGCA +
Preference number: 3 (lower is better)
Translates to: HTQPTGFSLHSC*KHNSGITHCTA
Trigger: TGCAGTGCAGTGTGTGATGCCCGAGTTGTGTTTGCAGCAGCTGTGCAAGCTGAAGCCTGTTGGCTGCGTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR GCA 72 bp CAACACACGCAGCCAACAGGCTTCAGCTTGCACAGCTaGTGCAAACACAACTCGGGCATCACACACTGCACT +
Preference number: 3 (lower is better)
Translates to: QHTQPTGFSLHS*CKHNSGITHCT
Trigger: AGTGCAGTGTGTGATGCCCGAGTTGTGTTTGCAGCAGCTGTGCAAGCTGAAGCCTGTTGGCTGCGTGTGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR GCA 72 bp CTGCTGCAAACACAACTCGGGCATCACACACTGCACTaGACGGCCTGGGTTAAAATGTGTGCCACAGAATTT +
Preference number: 3 (lower is better)
Translates to: LLQTQLGHHTLH*TAWVKMCATEF
Trigger: AAATTCTGTGGCACACATTTTAACCCAGGCCGTGCAGTGCAGTGTGTGATGCCCGAGTTGTGTTTGCAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR CAA 90 bp GCCAACAGGCTTCAGCTTGCACAGCTGCTGCAAACACAACTCGGGCATCACACAAACGTCTTTGGAATCTaGCTAATTCCTCAGACTAAC +
Preference number: 3 (lower is better)
Translates to: ANRLQLAQLLQTQLGHHTNVFGI*LIPQTN
Trigger: GTTAGTCTGAGGAATTAGCAAGATTCCAAAGACGTT...TGTGTGATGCCCGAGTTGTGTTTGCAGCAGCTGTGCAAGCTGAAGCCTGTTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR CAA 90 bp CATGATCCTCACAGGGACAGCTCCCAAGATATCCCCCTGCCTCAGCTAGTCAACAACGTCTTTGGAATCTaGCTAATTCCTCAGACTAAC +
Preference number: 3 (lower is better)
Translates to: HDPHRDSSQDIPLPQLVNNVFGI*LIPQTN
Trigger: GTTAGTCTGAGGAATTAGCAAGATTCCAAAGACGTT...GTTGACTAGCTGAGGCAGGGGGATATCTTGGGAGCTGTCCCTGTGAGGATCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR CAA 90 bp AGTACTCTATACTGGCAACCGTCATTCATGATCCTCACAGGGACAGCTCCCAAGCCAACCAGGAGGTCTTaGTCTGATGTTCTGAGAGTA +
Preference number: 3 (lower is better)
Translates to: STLYWQPSFMILTGTAPKPTRRS*SDVLRV
Trigger: TACTCTCAGAACATCAGACAAAGACCTCCTGGTTGG...CTTGGGAGCTGTCCCTGTGAGGATCATGAATGACGGTTGCCAGTATAGAGTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR TCA 72 bp CCACACGGACTGTGGTCTTCTGAAAATTACGAAGAGTaGGAACGGAAGACGAGAGGGGAAGCCTTGTTCAAA +
Preference number: 3 (lower is better)
Translates to: PHGLWSSENYEE*ERKTRGEALFK
Trigger: TTTGAACAAGGCTTCCCCTCTCGTCTTCCGTTCTCACTCTTCGTAATTTTCAGAAGACCACAGTCCGTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR TCA 72 bp AGTCTGAACTCCATCCCGTGTAAGCGTCCATGGATGTaGGCAATGTGGTTTTGGGTCATGTTGGTGCATTTA +
Preference number: 3 (lower is better)
Translates to: SLNSIPCKRPWM*AMWFWVMLVHL
Trigger: TAAATGCACCAACATGACCCAAAACCACATTGCTCACATCCATGGACGCTTACACGGGATGGAGTTCAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR CCA 72 bp ACACAACTCGGGCATCACACACTGCACTGCACGGCCTaGGTTAAAATGTGTGCCACAGAATTTTTAATGCAT +
Preference number: 3 (lower is better)
Translates to: TQLGHHTLHCTA*VKMCATEFLMH
Trigger: ATGCATTAAAAATTCTGTGGCACACATTTTAACCCAGGCCGTGCAGTGCAGTGTGTGATGCCCGAGTTGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR CAA 90 bp TTGAAAAACTGCTTTGGTGTGACAGTACTATCACTACCTGTAGGATACTTGCATGTGAGCAATGTGGTTTaGGGTCATGTTGGTGCATTT +
Preference number: 3 (lower is better)
Translates to: LKNCFGVTVLSLPVGYLHVSNVV*GHVGAF
Trigger: AAATGCACCAACATGACCCAAAACCACATTGCTCAC...ATGCAAGTATCCTACAGGTAGTGATAGTACTGTCACACCAAAGCAGTTTTTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR-3UTR CAA 90 bp ATGTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCAACGTCTTTGGAATCTaGCTAATTCCTCAGACTAAC +
Preference number: 3 (lower is better)
Translates to: MCATEFLMHPSPFPTKPFNVFGI*LIPQTN
Trigger: GTTAGTCTGAGGAATTAGCAAGATTCCAAAGACGTT...GAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
3UTR TCA 72 bp GTAATAAGCAGGTTGGGCAAACTATTCCTTGAGTATTaGAATGAAGTACTCTATACTGGCAACCGTCATTCA +
Preference number: 3 (lower is better)
Translates to: VISRLGKLFLEY*NEVLYTGNRHS
Trigger: TGAATGACGGTTGCCAGTATAGAGTACTTCATTTCAATACTCAAGGAATAGTTTGCCCAACCTGCTTATTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR CCA 72 bp TGCACAACTTTGACTTTAATTTTTAGATGTCTCCAATaGACAGATAAGTACCCATGGATTTTTGAGCCCACC +
Preference number: 3 (lower is better)
Translates to: CTTLTLIFRCLQ*TDKYPWIFEPT
Trigger: GGTGGGCTCAAAAATCCATGGGTACTTATCTGTCCATTGGAGACATCTAAAAATTAAAGTCAAAGTTGTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR TCA 72 bp GAAAATTATTTACAAACCCTTCCTTCGCTACTTTGCTaGGATGATTATAGTCTTGTAAACAGTGAAGAGCAT +
Preference number: 3 (lower is better)
Translates to: ENYLQTLPSLLC*DDYSLVNSEEH
Trigger: ATGCTCTTCACTGTTTACAAGACTATAATCATCTCAGCAAAGTAGCGAAGGAAGGGTTTGTAAATAATTTTC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp GCCAACAGGCTTCAGCTTGCACAGCTGCTGCAAACACAACTCGGGCATCACACACACTGCCACCAGGACTaGCAGGCGCACCATGAGAAG +
Preference number: 4 (lower is better)
Translates to: ANRLQLAQLLQTQLGHHTHCHQD*QAHHEK
Trigger: CTTCTCATGGTGCGCCTGGCAGTCCTGGTGGCAGTG...TGTGTGATGCCCGAGTTGTGTTTGCAGCAGCTGTGCAAGCTGAAGCCTGTTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp CATGATCCTCACAGGGACAGCTCCCAAGATATCCCCCTGCCTCAGCTAGTCAACCACTGCCACCAGGACTaGCAGGCGCACCATGAGAAG +
Preference number: 4 (lower is better)
Translates to: HDPHRDSSQDIPLPQLVNHCHQD*QAHHEK
Trigger: CTTCTCATGGTGCGCCTGGCAGTCCTGGTGGCAGTG...GTTGACTAGCTGAGGCAGGGGGATATCTTGGGAGCTGTCCCTGTGAGGATCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp CATGATCCTCACAGGGACAGCTCCCAAGATATCCCCCTGCCTCAGCTAGTCAACGAGAGAGCGGGAGGATaGTCCCCACGGACACAAATA +
Preference number: 4 (lower is better)
Translates to: HDPHRDSSQDIPLPQLVNERAGG*SPRTQI
Trigger: TATTTGTGTCCGTGGGGATCATCCTCCCGCTCTCTC...GTTGACTAGCTGAGGCAGGGGGATATCTTGGGAGCTGTCCCTGTGAGGATCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
3UTR CAA 72 bp TCTGCTGACCAACACACGCAGCCAACAGGCTTCAGCTaGCACAGCTGCTGCAAACACAACTCGGGCATCACA +
Preference number: 4 (lower is better)
Translates to: SADQHTQPTGFS*HSCCKHNSGIT
Trigger: TGTGATGCCCGAGTTGTGTTTGCAGCAGCTGTGCAAGCTGAAGCCTGTTGGCTGCGTGTGTTGGTCAGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp AAAATGTCCTTCAGACAATTTCAGCTGTTTCCAGTGGAGACGCGTCTCCCCGGGCGAGGTAGTTGCCGTTaGGGTACCATTCCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: KMSFRQFQLFPVETRLPGRGSCR*GTIPQC
Trigger: ACACTGGGGAATGGTACCTCAACGGCAACTACCTCG...CCCGGGGAGACGCGTCTCCACTGGAAACAGCTGAAATTGTCTGAAGGACATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp CCAGAGATTCTAGGCAGTGGGCGGAGTCTGAACTCCATCCCGTGTAAGCGTCCATGTAAATCACCACACTaGCGAAAAACACCATGCAGG +
Preference number: 4 (lower is better)
Translates to: PEILGSGRSLNSIPCKRPCKSPH*RKTPCR
Trigger: CCTGCATGGTGTTTTTCGTCAGTGTGGTGATTTACA...TGGACGCTTACACGGGATGGAGTTCAGACTCCGCCCACTGCCTAGAATCTCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp CCAGAGATTCTAGGCAGTGGGCGGAGTCTGAACTCCATCCCGTGTAAGCGTCCAGTAGAGCGAGAGTATTaGCACAGTAAGCAGCATGAT +
Preference number: 4 (lower is better)
Translates to: PEILGSGRSLNSIPCKRPVEREY*HSKQHD
Trigger: ATCATGCTGCTTACTGTGGCAATACTCTCGCTCTAC...TGGACGCTTACACGGGATGGAGTTCAGACTCCGCCCACTGCCTAGAATCTCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp GCCAACAGGCTTCAGCTTGCACAGCTGCTGCAAACACAACTCGGGCATCACACACCCAGGCCATCCAAATaGTTTCTCGCCCAATTTTTC +
Preference number: 4 (lower is better)
Translates to: ANRLQLAQLLQTQLGHHTPRPSK*FLAQFF
Trigger: GAAAAATTGGGCGAGAAAGCATTTGGATGGCCTGGG...TGTGTGATGCCCGAGTTGTGTTTGCAGCAGCTGTGCAAGCTGAAGCCTGTTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp CTTCTGAAAATTACGAAGAGTGAGAACGGAAGACGAGAGGGGAAGCCTTGTTCAAGAGGGCCTGCGACCTaGTTCTCATCCAGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: LLKITKSENGRREGKPCSRGPAT*FSSSPA
Trigger: AGCTGGGCTGGATGAGAAGCAGGTCGCAGGCCCTCT...TGAACAAGGCTTCCCCTCTCGTCTTCCGTTCTCACTCTTCGTAATTTTCAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp AAAATGTCCTTCAGACAATTTCAGCTGTTTCCAGTGGAGACGCGTCTCCCCGGGTCCCGGTGTTGGCCATaGCATAGGACAAGCCTAAGA +
Preference number: 4 (lower is better)
Translates to: KMSFRQFQLFPVETRLPGSRCWP*HRTSLR
Trigger: TCTTAGGCTTGTCCTATGCCATGGCCAACACCGGGA...CCCGGGGAGACGCGTCTCCACTGGAAACAGCTGAAATTGTCTGAAGGACATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp CAGGGACAGCTCCCAAGATATCCCCCTGCCTCAGCTAGTCAACCGACCCTTAGTAGAGGTAGCTTGACATaGCTCCAATGTTCTGCATTG +
Preference number: 4 (lower is better)
Translates to: QGQLPRYPPASASQPTLSRGSLT*LQCSAL
Trigger: CAATGCAGAACATTGGAGCCATGTCAAGCTACCTCT...ACTAAGGGTCGGTTGACTAGCTGAGGCAGGGGGATATCTTGGGAGCTGTCCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp CTAAAATGTCCTTCAGACAATTTCAGCTGTTTCCAGTGGAGACGCGTCTCCCCGCTCATCCAGCCCAGCTaGGTTGTGGTGAGCGTAATC +
Preference number: 4 (lower is better)
Translates to: LKCPSDNFSCFQWRRVSPLIQPS*VVVSVI
Trigger: GATTACGCTCACCACAACCCAGCTGGGCTGGATGAG...CGGGGAGACGCGTCTCCACTGGAAACAGCTGAAATTGTCTGAAGGACATTTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp AAAATGTCCTTCAGACAATTTCAGCTGTTTCCAGTGGAGACGCGTCTCCCCGGGAGCAAAAGCCAGGATTaGGATTGCATAGGCCGTCCG +
Preference number: 4 (lower is better)
Translates to: KMSFRQFQLFPVETRLPGSKSQD*DCIGRP
Trigger: CGGACGGCCTATGCAATCCCAATCCTGGCTTTTGCT...CCCGGGGAGACGCGTCTCCACTGGAAACAGCTGAAATTGTCTGAAGGACATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp AGTACTCTATACTGGCAACCGTCATTCATGATCCTCACAGGGACAGCTCCCAAGAGATTTCCGTTGTTGTaGTCCAGAGCAGGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: STLYWQPSFMILTGTAPKRFPLL*SRAGRG
Trigger: CCCTCTGCCTGCTCTGGATCACAACAACGGAAATCT...CTTGGGAGCTGTCCCTGTGAGGATCATGAATGACGGTTGCCAGTATAGAGTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp ACAACTAAAATGTCCTTCAGACAATTTCAGCTGTTTCCAGTGGAGACGCGTCTCAGAGGGCCTGCGACCTaGTTCTCATCCAGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: TTKMSFRQFQLFPVETRLRGPAT*FSSSPA
Trigger: AGCTGGGCTGGATGAGAAGCAGGTCGCAGGCCCTCT...GAGACGCGTCTCCACTGGAAACAGCTGAAATTGTCTGAAGGACATTTTAGTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp CTAAAATGTCCTTCAGACAATTTCAGCTGTTTCCAGTGGAGACGCGTCTCCCCGAGCCAGGATTGGGATTaGATAGGCCGTCCGGGAATT +
Preference number: 4 (lower is better)
Translates to: LKCPSDNFSCFQWRRVSPSQDWD*IGRPGI
Trigger: AATTCCCGGACGGCCTATGCAATCCCAATCCTGGCT...CGGGGAGACGCGTCTCCACTGGAAACAGCTGAAATTGTCTGAAGGACATTTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp ACGGACTGTGGTCTTCTGAAAATTACGAAGAGTGAGAACGGAAGACGAGAGGGGAGCAAAAGCCAGGATTaGGATTGCATAGGCCGTCCG +
Preference number: 4 (lower is better)
Translates to: TDCGLLKITKSENGRREGSKSQD*DCIGRP
Trigger: CGGACGGCCTATGCAATCCCAATCCTGGCTTTTGCT...CCCCTCTCGTCTTCCGTTCTCACTCTTCGTAATTTTCAGAAGACCACAGTCCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp CTCCAATGGACAGATAAGTACCCATGGATTTTTGAGCCCACCAGCTTAATTCCCTCGGGAACAGCACGATaGGCACGGTCAGTGTCACTG +
Preference number: 4 (lower is better)
Translates to: LQWTDKYPWIFEPTSLIPSGTAR*ARSVSL
Trigger: CAGTGACACTGACCGTGCCCATCGTGCTGTTCCCGA...GGGAATTAAGCTGGTGGGCTCAAAAATCCATGGGTACTTATCTGTCCATTGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp CATGATCCTCACAGGGACAGCTCCCAAGATATCCCCCTGCCTCAGCTAGTCAACAAAGCCCCAATCTTCTaGGGTGATCTTAGAGGTTCT +
Preference number: 4 (lower is better)
Translates to: HDPHRDSSQDIPLPQLVNKAPIF*GDLRGS
Trigger: AGAACCTCTAAGATCACCCCAGAAGATTGGGGCTTT...GTTGACTAGCTGAGGCAGGGGGATATCTTGGGAGCTGTCCCTGTGAGGATCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp CCAGAGATTCTAGGCAGTGGGCGGAGTCTGAACTCCATCCCGTGTAAGCGTCCATTTGTCAGGAACTTCTaGCTTTCGGCATCTTCATTA +
Preference number: 4 (lower is better)
Translates to: PEILGSGRSLNSIPCKRPFVRNF*LSASSL
Trigger: TAATGAAGATGCCGAAAGTCAGAAGTTCCTGACAAA...TGGACGCTTACACGGGATGGAGTTCAGACTCCGCCCACTGCCTAGAATCTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp GATGTTCTGAGAGTAGAATTACCTGTTAATCTGGGGGTGGAGAGAAGTGGAGTGGAGAGAGCGGGAGGATaGTCCCCACGGACACAAATA +
Preference number: 4 (lower is better)
Translates to: DVLRVELPVNLGVERSGVERAGG*SPRTQI
Trigger: TATTTGTGTCCGTGGGGATCATCCTCCCGCTCTCTC...CACTCCACTTCTCTCCACCCCCAGATTAACAGGTAATTCTACTCTCAGAACATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp ATAGAGATGTATCAAACAATACTGGGTAGTGTGTCTCCACACGGACTGTGGTCTGCTGTGAAGAGGGCCTaGGACCTGCTTCTCATCCAG +
Preference number: 4 (lower is better)
Translates to: IEMYQTILGSVSPHGLWSAVKRA*DLLLIQ
Trigger: CTGGATGAGAAGCAGGTCGCAGGCCCTCTTCACAGC...AGACCACAGTCCGTGTGGAGACACACTACCCAGTATTGTTTGATACATCTCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp GTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCCACTGCCACCAGGACTaGCAGGCGCACCATGAGAAG +
Preference number: 4 (lower is better)
Translates to: VCHRIFNASFTIPNKTIPHCHQD*QAHHEK
Trigger: CTTCTCATGGTGCGCCTGGCAGTCCTGGTGGCAGTG...GGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp CTCCAATGGACAGATAAGTACCCATGGATTTTTGAGCCCACCAGCTTAATTCCCCATTTCTCAGCACCCTaGGCTTCGTACTCCACGCCA +
Preference number: 4 (lower is better)
Translates to: LQWTDKYPWIFEPTSLIPHFSAP*ASYSTP
Trigger: TGGCGTGGAGTACGAAGCCCAGGGTGCTGAGAAATG...GGGAATTAAGCTGGTGGGCTCAAAAATCCATGGGTACTTATCTGTCCATTGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp CATGATCCTCACAGGGACAGCTCCCAAGATATCCCCCTGCCTCAGCTAGTCAACTTTGTCAGGAACTTCTaGCTTTCGGCATCTTCATTA +
Preference number: 4 (lower is better)
Translates to: HDPHRDSSQDIPLPQLVNFVRNF*LSASSL
Trigger: TAATGAAGATGCCGAAAGTCAGAAGTTCCTGACAAA...GTTGACTAGCTGAGGCAGGGGGATATCTTGGGAGCTGTCCCTGTGAGGATCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp CAGGGACAGCTCCCAAGATATCCCCCTGCCTCAGCTAGTCAACCGACCCTTAGTATGGCTCCAATGTTCTaGATTGTAATAGAGATGAAG +
Preference number: 4 (lower is better)
Translates to: QGQLPRYPPASASQPTLSMAPMF*IVIEMK
Trigger: CTTCATCTCTATTACAATGCAGAACATTGGAGCCAT...ACTAAGGGTCGGTTGACTAGCTGAGGCAGGGGGATATCTTGGGAGCTGTCCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp ATAGAGATGTATCAAACAATACTGGGTAGTGTGTCTCCACACGGACTGTGGTCTCTCATCCAGCCCAGCTaGGTTGTGGTGAGCGTAATC +
Preference number: 4 (lower is better)
Translates to: IEMYQTILGSVSPHGLWSLIQPS*VVVSVI
Trigger: GATTACGCTCACCACAACCCAGCTGGGCTGGATGAG...AGACCACAGTCCGTGTGGAGACACACTACCCAGTATTGTTTGATACATCTCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp TCGGGCATCACACACTGCACTGCACGGCCTGGGTTAAAATGTGTGCCACAGAATACAAAGTATTTTGGTTaGCATTTCTCAGCACCCTGG +
Preference number: 4 (lower is better)
Translates to: SGITHCTARPGLKCVPQNTKYFG*HFSAPW
Trigger: CCAGGGTGCTGAGAAATGCCAACCAAAATACTTTGT...ATTCTGTGGCACACATTTTAACCCAGGCCGTGCAGTGCAGTGTGTGATGCCCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp AAAATGTCCTTCAGACAATTTCAGCTGTTTCCAGTGGAGACGCGTCTCCCCGGGCTGAGATGGAAATGTTaGACACCGTCTGCATCTTTC +
Preference number: 4 (lower is better)
Translates to: KMSFRQFQLFPVETRLPGLRWKC*TPSASF
Trigger: GAAAGATGCAGACGGTGTCCAACATTTCCATCTCAG...CCCGGGGAGACGCGTCTCCACTGGAAACAGCTGAAATTGTCTGAAGGACATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp ACGGACTGTGGTCTTCTGAAAATTACGAAGAGTGAGAACGGAAGACGAGAGGGGGCTGAAGGGTTTCCTTaGAAACAGCAGTGTGATCAC +
Preference number: 4 (lower is better)
Translates to: TDCGLLKITKSENGRREGAEGFP*KQQCDH
Trigger: GTGATCACACTGCTGTTTCCAAGGAAACCCTTCAGC...CCCCTCTCGTCTTCCGTTCTCACTCTTCGTAATTTTCAGAAGACCACAGTCCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp TGTGGTCTTCTGAAAATTACGAAGAGTGAGAACGGAAGACGAGAGGGGAAGCCTGATGAAGAGGTAGCTTaGCATGGCTCCAATGTTCTG +
Preference number: 4 (lower is better)
Translates to: CGLLKITKSENGRREGKPDEEVA*HGSNVL
Trigger: CAGAACATTGGAGCCATGTCAAGCTACCTCTTCATC...AGGCTTCCCCTCTCGTCTTCCGTTCTCACTCTTCGTAATTTTCAGAAGACCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp GTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCCGAGGTAGTTGCCGTTaGGGTACCATTCCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: VCHRIFNASFTIPNKTIPRGSCR*GTIPQC
Trigger: ACACTGGGGAATGGTACCTCAACGGCAACTACCTCG...GGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp AGTACTCTATACTGGCAACCGTCATTCATGATCCTCACAGGGACAGCTCCCAAGTGTAAATCACCACACTaGCGAAAAACACCATGCAGG +
Preference number: 4 (lower is better)
Translates to: STLYWQPSFMILTGTAPKCKSPH*RKTPCR
Trigger: CCTGCATGGTGTTTTTCGTCAGTGTGGTGATTTACA...CTTGGGAGCTGTCCCTGTGAGGATCATGAATGACGGTTGCCAGTATAGAGTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp ACCATTCCCAACAAAACCCATAATTTTCTCTTCCACAAGTATCCCATGATAGAGAGAGGGCCTGCGACCTaGTTCTCATCCAGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: TIPNKTHNFLFHKYPMIERGPAT*FSSSPA
Trigger: AGCTGGGCTGGATGAGAAGCAGGTCGCAGGCCCTCT...CTCTATCATGGGATACTTGTGGAAGAGAAAATTATGGGTTTTGTTGGGAATGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp TGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCATCGGGAACAGCACGATaGGCACGGTCAGTGTCACTG +
Preference number: 4 (lower is better)
Translates to: CATEFLMHPSPFPTKPFPSGTAR*ARSVSL
Trigger: CAGTGACACTGACCGTGCCCATCGTGCTGTTCCCGA...TGGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp GATGTTCTGAGAGTAGAATTACCTGTTAATCTGGGGGTGGAGAGAAGTGGAGTGAATGCTTCAGCCAGCTaGAGGGTTTCCTTGGAAACA +
Preference number: 4 (lower is better)
Translates to: DVLRVELPVNLGVERSGVNASAS*RVSLET
Trigger: TGTTTCCAAGGAAACCCTTCAGCTGGCTGAAGCATT...CACTCCACTTCTCTCCACCCCCAGATTAACAGGTAATTCTACTCTCAGAACATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp CCCAACAAAACCCATAATTTTCTCTTCCACAAGTATCCCATGATAGAGCTAGAAGCTGTGAAGAGGGCCTaGGACCTGCTTCTCATCCAG +
Preference number: 4 (lower is better)
Translates to: PNKTHNFLFHKYPMIELEAVKRA*DLLLIQ
Trigger: CTGGATGAGAAGCAGGTCGCAGGCCCTCTTCACAGC...TTCTAGCTCTATCATGGGATACTTGTGGAAGAGAAAATTATGGGTTTTGTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp CTGTTGAAAAACTGCTTTGGTGTGACAGTACTATCACTACCTGTAGGATACTTGCATTTCTCAGCACCCTaGGCTTCGTACTCCACGCCA +
Preference number: 4 (lower is better)
Translates to: LLKNCFGVTVLSLPVGYLHFSAP*ASYSTP
Trigger: TGGCGTGGAGTACGAAGCCCAGGGTGCTGAGAAATG...CAAGTATCCTACAGGTAGTGATAGTACTGTCACACCAAAGCAGTTTTTCAACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp CCCAACAAAACCCATAATTTTCTCTTCCACAAGTATCCCATGATAGAGCTAGAACGAGGTAGTTGCCGTTaGGGTACCATTCCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: PNKTHNFLFHKYPMIELERGSCR*GTIPQC
Trigger: ACACTGGGGAATGGTACCTCAACGGCAACTACCTCG...TTCTAGCTCTATCATGGGATACTTGTGGAAGAGAAAATTATGGGTTTTGTTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp TTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGAGAGGGCCTGCGACCTaGTTCTCATCCAGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: FGILLIPQTNIPIKTTKMRGPAT*FSSSPA
Trigger: AGCTGGGCTGGATGAGAAGCAGGTCGCAGGCCCTCT...CATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp TTTCTCTTCCACAAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTGTGAAGAGGGCCTaGGACCTGCTTCTCATCCAG +
Preference number: 4 (lower is better)
Translates to: FLFHKYPMIELEKRLWNLAVKRA*DLLLIQ
Trigger: CTGGATGAGAAGCAGGTCGCAGGCCCTCTTCACAGC...AAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTTGTGGAAGAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp GCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCAACAAGCCAGGATTGGGATTaGATAGGCCGTCCGGGAATT +
Preference number: 4 (lower is better)
Translates to: ATEFLMHPSPFPTKPFPTSQDWD*IGRPGI
Trigger: AATTCCCGGACGGCCTATGCAATCCCAATCCTGGCT...TGTTGGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp TTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGCACTGCCACCAGGACTaGCAGGCGCACCATGAGAAG +
Preference number: 4 (lower is better)
Translates to: FGILLIPQTNIPIKTTKMHCHQD*QAHHEK
Trigger: CTTCTCATGGTGCGCCTGGCAGTCCTGGTGGCAGTG...CATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp CTTCTGAAAATTACGAAGAGTGAGAACGGAAGACGAGAGGGGAAGCCTTGTTCACAGGATGTTGTTGAGTaGGATGATGATTGCAGCGAT +
Preference number: 4 (lower is better)
Translates to: LLKITKSENGRREGKPCSQDVVE*DDDCSD
Trigger: ATCGCTGCAATCATCATCGCACTCAACAACATCCTG...TGAACAAGGCTTCCCCTCTCGTCTTCCGTTCTCACTCTTCGTAATTTTCAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp TTTCTCTTCCACAAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGAGAGAGCGGGAGGATaGTCCCCACGGACACAAATA +
Preference number: 4 (lower is better)
Translates to: FLFHKYPMIELEKRLWNLERAGG*SPRTQI
Trigger: TATTTGTGTCCGTGGGGATCATCCTCCCGCTCTCTC...AAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTTGTGGAAGAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp GTCTTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAGAGAGAGCGGGAGGATaGTCCCCACGGACACAAATA +
Preference number: 4 (lower is better)
Translates to: VFGILLIPQTNIPIKTTKERAGG*SPRTQI
Trigger: TATTTGTGTCCGTGGGGATCATCCTCCCGCTCTCTC...TTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp CTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAGACAACTGCCAGGCGCACCATaGGAAGAGCCGTATCAAATG +
Preference number: 4 (lower is better)
Translates to: LIPQTNIPIKTTKMSFRQLPGAP*EEPYQM
Trigger: CATTTGATACGGCTCTTCTCATGGTGCGCCTGGCAG...TTGTCTGAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp ATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCCTGCCAGGCGCACCATaGGAAGAGCCGTATCAAATG +
Preference number: 4 (lower is better)
Translates to: ILLIPQTNIPIKTTKMSFLPGAP*EEPYQM
Trigger: CATTTGATACGGCTCTTCTCATGGTGCGCCTGGCAG...GAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp AAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCTCACTGCCAGGCGCACCATaGGAAGAGCCGTATCAAATG +
Preference number: 4 (lower is better)
Translates to: KYPMIELEKRLWNLANSSLPGAP*EEPYQM
Trigger: CATTTGATACGGCTCTTCTCATGGTGCGCCTGGCAG...TGAGGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp GTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCAATGCTTCAGCCAGCTaGAGGGTTTCCTTGGAAACA +
Preference number: 4 (lower is better)
Translates to: VCHRIFNASFTIPNKTIPNASAS*RVSLET
Trigger: TGTTTCCAAGGAAACCCTTCAGCTGGCTGAAGCATT...GGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp CTCCAATGGACAGATAAGTACCCATGGATTTTTGAGCCCACCAGCTTAATTCCCTTCAAGTCCCATGAATaGTCTGATTACTTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: LQWTDKYPWIFEPTSLIPFKSHE*SDYFRQ
Trigger: CTGCCTGAAGTAATCAGAGCATTCATGGGACTTGAA...GGGAATTAAGCTGGTGGGCTCAAAAATCCATGGGTACTTATCTGTCCATTGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp ACCATTCCCAACAAAACCCATAATTTTCTCTTCCACAAGTATCCCATGATAGAGTCCCGGTGTTGGCCATaGCATAGGACAAGCCTAAGA +
Preference number: 4 (lower is better)
Translates to: TIPNKTHNFLFHKYPMIESRCWP*HRTSLR
Trigger: TCTTAGGCTTGTCCTATGCCATGGCCAACACCGGGA...CTCTATCATGGGATACTTGTGGAAGAGAAAATTATGGGTTTTGTTGGGAATGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp ATGTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCTCCCGGTGTTGGCCATaGCATAGGACAAGCCTAAGA +
Preference number: 4 (lower is better)
Translates to: MCATEFLMHPSPFPTKPFSRCWP*HRTSLR
Trigger: TCTTAGGCTTGTCCTATGCCATGGCCAACACCGGGA...GAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp GTCTTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAACTCATCCAGCCCAGCTaGGTTGTGGTGAGCGTAATC +
Preference number: 4 (lower is better)
Translates to: VFGILLIPQTNIPIKTTKLIQPS*VVVSVI
Trigger: GATTACGCTCACCACAACCCAGCTGGGCTGGATGAG...TTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp AAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCTCACTCATCCAGCCCAGCTaGGTTGTGGTGAGCGTAATC +
Preference number: 4 (lower is better)
Translates to: KYPMIELEKRLWNLANSSLIQPS*VVVSVI
Trigger: GATTACGCTCACCACAACCCAGCTGGGCTGGATGAG...TGAGGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp AAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCTCACATTTCTCAGCACCCTaGGCTTCGTACTCCACGCCA +
Preference number: 4 (lower is better)
Translates to: KYPMIELEKRLWNLANSSHFSAP*ASYSTP
Trigger: TGGCGTGGAGTACGAAGCCCAGGGTGCTGAGAAATG...TGAGGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp CTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAGACAACATTTCTCAGCACCCTaGGCTTCGTACTCCACGCCA +
Preference number: 4 (lower is better)
Translates to: LIPQTNIPIKTTKMSFRQHFSAP*ASYSTP
Trigger: TGGCGTGGAGTACGAAGCCCAGGGTGCTGAGAAATG...TTGTCTGAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp TTGAAAAACTGCTTTGGTGTGACAGTACTATCACTACCTGTAGGATACTTGCATAGCAAAAGCCAGGATTaGGATTGCATAGGCCGTCCG +
Preference number: 4 (lower is better)
Translates to: LKNCFGVTVLSLPVGYLHSKSQD*DCIGRP
Trigger: CGGACGGCCTATGCAATCCCAATCCTGGCTTTTGCT...ATGCAAGTATCCTACAGGTAGTGATAGTACTGTCACACCAAAGCAGTTTTTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp TTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCGGGAACAGCACGATaGGCACGGTCAGTGTCACTG +
Preference number: 4 (lower is better)
Translates to: FGILLIPQTNIPIKTTKMSGTAR*ARSVSL
Trigger: CAGTGACACTGACCGTGCCCATCGTGCTGTTCCCGA...CATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp GTTAAAATGTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAATCGGGAACAGCACGATaGGCACGGTCAGTGTCACTG +
Preference number: 4 (lower is better)
Translates to: VKMCATEFLMHPSPFPTKSGTAR*ARSVSL
Trigger: CAGTGACACTGACCGTGCCCATCGTGCTGTTCCCGA...TTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACACATTTTAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp GTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCGCTGAAGGGTTTCCTTaGAAACAGCAGTGTGATCAC +
Preference number: 4 (lower is better)
Translates to: VCHRIFNASFTIPNKTIPAEGFP*KQQCDH
Trigger: GTGATCACACTGCTGTTTCCAAGGAAACCCTTCAGC...GGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp GTCTTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAAGATTTCCGTTGTTGTaGTCCAGAGCAGGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: VFGILLIPQTNIPIKTTKRFPLL*SRAGRG
Trigger: CCCTCTGCCTGCTCTGGATCACAACAACGGAAATCT...TTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp ATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAGATTTCCGTTGTTGTaGTCCAGAGCAGGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: ILLIPQTNIPIKTTKMSFRFPLL*SRAGRG
Trigger: CCCTCTGCCTGCTCTGGATCACAACAACGGAAATCT...GAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp CACAAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCGAGCGTAATCCATCATaGAGTTCACACCCGAGCTCT +
Preference number: 4 (lower is better)
Translates to: HKYPMIELEKRLWNLANSERNPS*SSHPSS
Trigger: AGAGCTCGGGTGTGAACTTCATGATGGATTACGCTC...GGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp TTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGCTGCCAGGCGCACCATaGGAAGAGCCGTATCAAATG +
Preference number: 4 (lower is better)
Translates to: FGILLIPQTNIPIKTTKMLPGAP*EEPYQM
Trigger: CATTTGATACGGCTCTTCTCATGGTGCGCCTGGCAG...CATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp ATAGAGATGTATCAAACAATACTGGGTAGTGTGTCTCCACACGGACTGTGGTCTTTCAAGTCCCATGAATaGTCTGATTACTTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: IEMYQTILGSVSPHGLWSFKSHE*SDYFRQ
Trigger: CTGCCTGAAGTAATCAGAGCATTCATGGGACTTGAA...AGACCACAGTCCGTGTGGAGACACACTACCCAGTATTGTTTGATACATCTCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp ACAACTAAAATGTCCTTCAGACAATTTCAGCTGTTTCCAGTGGAGACGCGTCTCTTCAAGTCCCATGAATaGTCTGATTACTTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: TTKMSFRQFQLFPVETRLFKSHE*SDYFRQ
Trigger: CTGCCTGAAGTAATCAGAGCATTCATGGGACTTGAA...GAGACGCGTCTCCACTGGAAACAGCTGAAATTGTCTGAAGGACATTTTAGTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp AAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCTCAAGCCAGGATTGGGATTaGATAGGCCGTCCGGGAATT +
Preference number: 4 (lower is better)
Translates to: KYPMIELEKRLWNLANSSSQDWD*IGRPGI
Trigger: AATTCCCGGACGGCCTATGCAATCCCAATCCTGGCT...TGAGGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp ATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAGCCAGGATTGGGATTaGATAGGCCGTCCGGGAATT +
Preference number: 4 (lower is better)
Translates to: ILLIPQTNIPIKTTKMSFSQDWD*IGRPGI
Trigger: AATTCCCGGACGGCCTATGCAATCCCAATCCTGGCT...GAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp GTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCCAGGATGTTGTTGAGTaGGATGATGATTGCAGCGAT +
Preference number: 4 (lower is better)
Translates to: VCHRIFNASFTIPNKTIPQDVVE*DDDCSD
Trigger: ATCGCTGCAATCATCATCGCACTCAACAACATCCTG...GGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp CTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAGACAATCCCGGTGTTGGCCATaGCATAGGACAAGCCTAAGA +
Preference number: 4 (lower is better)
Translates to: LIPQTNIPIKTTKMSFRQSRCWP*HRTSLR
Trigger: TCTTAGGCTTGTCCTATGCCATGGCCAACACCGGGA...TTGTCTGAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp TGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCAGCTGAAGGGTTTCCTTaGAAACAGCAGTGTGATCAC +
Preference number: 4 (lower is better)
Translates to: CATEFLMHPSPFPTKPFPAEGFP*KQQCDH
Trigger: GTGATCACACTGCTGTTTCCAAGGAAACCCTTCAGC...TGGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp ATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAGACAATTTAGATTTCCGTTGTTGTaGTCCAGAGCAGGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: IPQTNIPIKTTKMSFRQFRFPLL*SRAGRG
Trigger: CCCTCTGCCTGCTCTGGATCACAACAACGGAAATCT...AAATTGTCTGAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp AAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCTCAGAGCGTAATCCATCATaGAGTTCACACCCGAGCTCT +
Preference number: 4 (lower is better)
Translates to: KYPMIELEKRLWNLANSSERNPS*SSHPSS
Trigger: AGAGCTCGGGTGTGAACTTCATGATGGATTACGCTC...TGAGGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp CTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAGACAAGAGCGTAATCCATCATaGAGTTCACACCCGAGCTCT +
Preference number: 4 (lower is better)
Translates to: LIPQTNIPIKTTKMSFRQERNPS*SSHPSS
Trigger: AGAGCTCGGGTGTGAACTTCATGATGGATTACGCTC...TTGTCTGAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp TGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCAAGGCCGTCCGGGAATTaGACACAAAGTATTTTGGTT +
Preference number: 4 (lower is better)
Translates to: CATEFLMHPSPFPTKPFPRPSGN*TQSILV
Trigger: AACCAAAATACTTTGTGTTCAATTCCCGGACGGCCT...TGGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp GCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCAACAGTAGAGCGAGAGTATTaGCACAGTAAGCAGCATGAT +
Preference number: 4 (lower is better)
Translates to: ATEFLMHPSPFPTKPFPTVEREY*HSKQHD
Trigger: ATCATGCTGCTTACTGTGGCAATACTCTCGCTCTAC...TGTTGGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp GTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCACAAAGTATTTTGGTTaGCATTTCTCAGCACCCTGG +
Preference number: 4 (lower is better)
Translates to: VCHRIFNASFTIPNKTIPTKYFG*HFSAPW
Trigger: CCAGGGTGCTGAGAAATGCCAACCAAAATACTTTGT...GGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp TTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGAGCAAAAGCCAGGATTaGGATTGCATAGGCCGTCCG +
Preference number: 4 (lower is better)
Translates to: FGILLIPQTNIPIKTTKMSKSQD*DCIGRP
Trigger: CGGACGGCCTATGCAATCCCAATCCTGGCTTTTGCT...CATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp TGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCACTGAGATGGAAATGTTaGACACCGTCTGCATCTTTC +
Preference number: 4 (lower is better)
Translates to: CATEFLMHPSPFPTKPFPLRWKC*TPSASF
Trigger: GAAAGATGCAGACGGTGTCCAACATTTCCATCTCAG...TGGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp CTGTTGAAAAACTGCTTTGGTGTGACAGTACTATCACTACCTGTAGGATACTTGCTGAGATGGAAATGTTaGACACCGTCTGCATCTTTC +
Preference number: 4 (lower is better)
Translates to: LLKNCFGVTVLSLPVGYLLRWKC*TPSASF
Trigger: GAAAGATGCAGACGGTGTCCAACATTTCCATCTCAG...CAAGTATCCTACAGGTAGTGATAGTACTGTCACACCAAAGCAGTTTTTCAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp CTGTTGAAAAACTGCTTTGGTGTGACAGTACTATCACTACCTGTAGGATACTTGAAAGCCCCAATCTTCTaGGGTGATCTTAGAGGTTCT +
Preference number: 4 (lower is better)
Translates to: LLKNCFGVTVLSLPVGYLKAPIF*GDLRGS
Trigger: AGAACCTCTAAGATCACCCCAGAAGATTGGGGCTTT...CAAGTATCCTACAGGTAGTGATAGTACTGTCACACCAAAGCAGTTTTTCAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp GTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCTTTGTCAGGAACTTCTaGCTTTCGGCATCTTCATTA +
Preference number: 4 (lower is better)
Translates to: VCHRIFNASFTIPNKTIPFVRNF*LSASSL
Trigger: TAATGAAGATGCCGAAAGTCAGAAGTTCCTGACAAA...GGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp ATGTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCTGTAAATCACCACACTaGCGAAAAACACCATGCAGG +
Preference number: 4 (lower is better)
Translates to: MCATEFLMHPSPFPTKPFCKSPH*RKTPCR
Trigger: CCTGCATGGTGTTTTTCGTCAGTGTGGTGATTTACA...GAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp TTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGGAGCGTAATCCATCATaGAGTTCACACCCGAGCTCT +
Preference number: 4 (lower is better)
Translates to: FGILLIPQTNIPIKTTKMERNPS*SSHPSS
Trigger: AGAGCTCGGGTGTGAACTTCATGATGGATTACGCTC...CATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp ATGTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCAGGCCGTCCGGGAATTaGACACAAAGTATTTTGGTT +
Preference number: 4 (lower is better)
Translates to: MCATEFLMHPSPFPTKPFRPSGN*TQSILV
Trigger: AACCAAAATACTTTGTGTTCAATTCCCGGACGGCCT...GAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp AAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCTCAAATGCTTCAGCCAGCTaGAGGGTTTCCTTGGAAACA +
Preference number: 4 (lower is better)
Translates to: KYPMIELEKRLWNLANSSNASAS*RVSLET
Trigger: TGTTTCCAAGGAAACCCTTCAGCTGGCTGAAGCATT...TGAGGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp ACAACTAAAATGTCCTTCAGACAATTTCAGCTGTTTCCAGTGGAGACGCGTCTCATGGCTCCAATGTTCTaGATTGTAATAGAGATGAAG +
Preference number: 4 (lower is better)
Translates to: TTKMSFRQFQLFPVETRLMAPMF*IVIEMK
Trigger: CTTCATCTCTATTACAATGCAGAACATTGGAGCCAT...GAGACGCGTCTCCACTGGAAACAGCTGAAATTGTCTGAAGGACATTTTAGTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp GTCTTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAGCTGAAGGGTTTCCTTaGAAACAGCAGTGTGATCAC +
Preference number: 4 (lower is better)
Translates to: VFGILLIPQTNIPIKTTKAEGFP*KQQCDH
Trigger: GTGATCACACTGCTGTTTCCAAGGAAACCCTTCAGC...TTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp GTCTTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAATGTAAATCACCACACTaGCGAAAAACACCATGCAGG +
Preference number: 4 (lower is better)
Translates to: VFGILLIPQTNIPIKTTKCKSPH*RKTPCR
Trigger: CCTGCATGGTGTTTTTCGTCAGTGTGGTGATTTACA...TTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAAGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp ATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAGGCCGTCCGGGAATTaGACACAAAGTATTTTGGTT +
Preference number: 4 (lower is better)
Translates to: ILLIPQTNIPIKTTKMSFRPSGN*TQSILV
Trigger: AACCAAAATACTTTGTGTTCAATTCCCGGACGGCCT...GAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp GTTAAAATGTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAAAATGCTTCAGCCAGCTaGAGGGTTTCCTTGGAAACA +
Preference number: 4 (lower is better)
Translates to: VKMCATEFLMHPSPFPTKNASAS*RVSLET
Trigger: TGTTTCCAAGGAAACCCTTCAGCTGGCTGAAGCATT...TTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACACATTTTAAC
40% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp GTCTTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAGTAGAGCGAGAGTATTaGCACAGTAAGCAGCATGAT +
Preference number: 4 (lower is better)
Translates to: VFGILLIPQTNIPIKTTKVEREY*HSKQHD
Trigger: ATCATGCTGCTTACTGTGGCAATACTCTCGCTCTAC...TTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAAGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp CACAAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCTTCAAGTCCCATGAATaGTCTGATTACTTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: HKYPMIELEKRLWNLANSFKSHE*SDYFRQ
Trigger: CTGCCTGAAGTAATCAGAGCATTCATGGGACTTGAA...GGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp GCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCAACAGAACACAAAGTATTTTaGTTGGCATTTCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: ATEFLMHPSPFPTKPFPTEHKVF*LAFLST
Trigger: GGTGCTGAGAAATGCCAACCAAAATACTTTGTGTTC...TGTTGGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp ATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAAAGCCCCAATCTTCTaGGGTGATCTTAGAGGTTCT +
Preference number: 4 (lower is better)
Translates to: ILLIPQTNIPIKTTKMSFKAPIF*GDLRGS
Trigger: AGAACCTCTAAGATCACCCCAGAAGATTGGGGCTTT...GAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp AAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCTCAAAAGCCCCAATCTTCTaGGGTGATCTTAGAGGTTCT +
Preference number: 4 (lower is better)
Translates to: KYPMIELEKRLWNLANSSKAPIF*GDLRGS
Trigger: AGAACCTCTAAGATCACCCCAGAAGATTGGGGCTTT...TGAGGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp GTTAAAATGTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAAAGGCCGTCCGGGAATTaGACACAAAGTATTTTGGTT +
Preference number: 4 (lower is better)
Translates to: VKMCATEFLMHPSPFPTKRPSGN*TQSILV
Trigger: AACCAAAATACTTTGTGTTCAATTCCCGGACGGCCT...TTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACACATTTTAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp GTTAAAATGTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAAGTAGAGCGAGAGTATTaGCACAGTAAGCAGCATGAT +
Preference number: 4 (lower is better)
Translates to: VKMCATEFLMHPSPFPTKVEREY*HSKQHD
Trigger: ATCATGCTGCTTACTGTGGCAATACTCTCGCTCTAC...TTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACACATTTTAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp ATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAGACAATTTCAGGATGTTGTTGAGTaGGATGATGATTGCAGCGAT +
Preference number: 4 (lower is better)
Translates to: IPQTNIPIKTTKMSFRQFQDVVE*DDDCSD
Trigger: ATCGCTGCAATCATCATCGCACTCAACAACATCCTG...AAATTGTCTGAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp AAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCTCAACAAAGTATTTTGGTTaGCATTTCTCAGCACCCTGG +
Preference number: 4 (lower is better)
Translates to: KYPMIELEKRLWNLANSSTKYFG*HFSAPW
Trigger: CCAGGGTGCTGAGAAATGCCAACCAAAATACTTTGT...TGAGGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp CCCAACAAAACCCATAATTTTCTCTTCCACAAGTATCCCATGATAGAGCTAGAAGAACACAAAGTATTTTaGTTGGCATTTCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: PNKTHNFLFHKYPMIELEEHKVF*LAFLST
Trigger: GGTGCTGAGAAATGCCAACCAAAATACTTTGTGTTC...TTCTAGCTCTATCATGGGATACTTGTGGAAGAGAAAATTATGGGTTTTGTTGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp ACCATTCCCAACAAAACCCATAATTTTCTCTTCCACAAGTATCCCATGATAGAGGAACACAAAGTATTTTaGTTGGCATTTCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: TIPNKTHNFLFHKYPMIEEHKVF*LAFLST
Trigger: GGTGCTGAGAAATGCCAACCAAAATACTTTGTGTTC...CTCTATCATGGGATACTTGTGGAAGAGAAAATTATGGGTTTTGTTGGGAATGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp GTTAAAATGTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACTGAGATGGAAATGTTaGACACCGTCTGCATCTTTC +
Preference number: 4 (lower is better)
Translates to: VKMCATEFLMHPSPFPTKLRWKC*TPSASF
Trigger: GAAAGATGCAGACGGTGTCCAACATTTCCATCTCAG...TTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACACATTTTAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000231039.2
CDS-3UTR TCA 90 bp TTTCTCTTCCACAAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTTTTGTCAGGAACTTCTaGCTTTCGGCATCTTCATTA +
Preference number: 4 (lower is better)
Translates to: FLFHKYPMIELEKRLWNLFVRNF*LSASSL
Trigger: TAATGAAGATGCCGAAAGTCAGAAGTTCCTGACAAA...AAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTTGTGGAAGAGAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp CCCAACAAAACCCATAATTTTCTCTTCCACAAGTATCCCATGATAGAGCTAGAAATGGCTCCAATGTTCTaGATTGTAATAGAGATGAAG +
Preference number: 4 (lower is better)
Translates to: PNKTHNFLFHKYPMIELEMAPMF*IVIEMK
Trigger: CTTCATCTCTATTACAATGCAGAACATTGGAGCCAT...TTCTAGCTCTATCATGGGATACTTGTGGAAGAGAAAATTATGGGTTTTGTTGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CCA 90 bp ATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCGAACACAAAGTATTTTaGTTGGCATTTCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: ILLIPQTNIPIKTTKMSFEHKVF*LAFLST
Trigger: GGTGCTGAGAAATGCCAACCAAAATACTTTGTGTTC...GAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR GCA 90 bp ATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAGACAATTTATGGCTCCAATGTTCTaGATTGTAATAGAGATGAAG +
Preference number: 4 (lower is better)
Translates to: IPQTNIPIKTTKMSFRQFMAPMF*IVIEMK
Trigger: CTTCATCTCTATTACAATGCAGAACATTGGAGCCAT...AAATTGTCTGAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
3UTR CAA 72 bp TTTGGTGTGACAGTACTATCACTACCTGTAGGATACTaGCATTTCAGACTTGGCTTTTTACTGAAATGTAAA +
Preference number: 4 (lower is better)
Translates to: FGVTVLSLPVGY*HFRLGFLLKCK
Trigger: TTTACATTTCAGTAAAAAGCCAAGTCTGAAATGCAAGTATCCTACAGGTAGTGATAGTACTGTCACACCAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS GCA 90 bp AGCACCCTGGGCTTCGTACTCCACGCCATTGCTGTGAAGAGGGCCTaGGACCTGCTTCTCATCCAGCCCAGCTGGGTTGTGGTGAGCGTA +
Preference number: 5 (lower is better)
Translates to: STLGFVLHAIAVKRA*DLLLIQPSWVVVSV
Trigger: TACGCTCACCACAACCCAGCTGGGCTGGATGAGAAGCAGGTCGCAGGCCCTCTTCACAGCAATGGCGTGGAGTACGAAGCCCAGGGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CCA 90 bp ATTGCTGTGAAGAGGGCCTGCGACCTGCTTCTCATCCAGCCCAGCTaGGTTGTGGTGAGCGTAATCCATCATGAAGTTCACACCCGAGCT +
Preference number: 5 (lower is better)
Translates to: IAVKRACDLLLIQPS*VVVSVIHHEVHTRA
Trigger: AGCTCGGGTGTGAACTTCATGATGGATTACGCTCACCACAACCCAGCTGGGCTGGATGAGAAGCAGGTCGCAGGCCCTCTTCACAGCAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS GCA 90 bp GGTAGGCACGAGGATGACCAGGATGTTGTTGAGTGCGATGATGATTaGAGCGATCCCGAAATGCTTCAGCCAGCTGAAGGGTTTCCTTGG +
Preference number: 5 (lower is better)
Translates to: GRHEDDQDVVECDDD*SDPEMLQPAEGFPW
Trigger: CCAAGGAAACCCTTCAGCTGGCTGAAGCATTTCGGGATCGCTGCAATCATCATCGCACTCAACAACATCCTGGTCATCCTCGTGCCTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CCA 90 bp GATTGCAGCGATCCCGAAATGCTTCAGCCAGCTGAAGGGTTTCCTTaGAAACAGCAGTGTGATCACCGAAGTACGGATCGGGAACAGCAC +
Preference number: 5 (lower is better)
Translates to: DCSDPEMLQPAEGFP*KQQCDHRSTDREQH
Trigger: GTGCTGTTCCCGATCCGTACTTCGGTGATCACACTGCTGTTTCCAAGGAAACCCTTCAGCTGGCTGAAGCATTTCGGGATCGCTGCAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp AGAGTGAGAACGGAAGACGAGAGGGGAAGCCTTGTTCAAAGACAAAGTGGAACAAAGCCAGGATTGGGATaGCATAGGCCGTCCGGGAAT +
Preference number: 5 (lower is better)
Translates to: RVRTEDERGSLVQRQSGTKPGLG*HRPSGN
Trigger: ATTCCCGGACGGCCTATGCAATCCCAATCCTGGCTT...TGTTCCACTTTGTCTTTGAACAAGGCTTCCCCTCTCGTCTTCCGTTCTCACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS GCA 90 bp GATGTATTTGATGGTAGGCACGAGGATGACCAGGATGTTGTTGAGTaGGATGATGATTGCAGCGATCCCGAAATGCTTCAGCCAGCTGAA +
Preference number: 5 (lower is better)
Translates to: DVFDGRHEDDQDVVE*DDDCSDPEMLQPAE
Trigger: TTCAGCTGGCTGAAGCATTTCGGGATCGCTGCAATCATCATCGCACTCAACAACATCCTGGTCATCCTCGTGCCTACCATCAAATACATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp ATAGAGATGTATCAAACAATACTGGGTAGTGTGTCTCCACACGGACTGTGGTCTGGTTCGATGCTGACGTaGTTCAGTTCCATGGGGTCC +
Preference number: 5 (lower is better)
Translates to: IEMYQTILGSVSPHGLWSGSMLT*FSSMGS
Trigger: GGACCCCATGGAACTGAACAACGTCAGCATCGAACC...AGACCACAGTCCGTGTGGAGACACACTACCCAGTATTGTTTGATACATCTCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp AAAATGTCCTTCAGACAATTTCAGCTGTTTCCAGTGGAGACGCGTCTCCCCGGGCACAAAGTATTTTGGTaGGCATTTCTCAGCACCCTG +
Preference number: 5 (lower is better)
Translates to: KMSFRQFQLFPVETRLPGHKVFW*AFLSTL
Trigger: CAGGGTGCTGAGAAATGCCAACCAAAATACTTTGTG...CCCGGGGAGACGCGTCTCCACTGGAAACAGCTGAAATTGTCTGAAGGACATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp ACGGACTGTGGTCTTCTGAAAATTACGAAGAGTGAGAACGGAAGACGAGAGGGGCACAAAGTATTTTGGTaGGCATTTCTCAGCACCCTG +
Preference number: 5 (lower is better)
Translates to: TDCGLLKITKSENGRREGHKVFW*AFLSTL
Trigger: CAGGGTGCTGAGAAATGCCAACCAAAATACTTTGTG...CCCCTCTCGTCTTCCGTTCTCACTCTTCGTAATTTTCAGAAGACCACAGTCCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp ACAACTAAAATGTCCTTCAGACAATTTCAGCTGTTTCCAGTGGAGACGCGTCTCAAGCAAAAGCCAGGATaGGGATTGCATAGGCCGTCC +
Preference number: 5 (lower is better)
Translates to: TTKMSFRQFQLFPVETRLKQKPG*GLHRPS
Trigger: GGACGGCCTATGCAATCCCAATCCTGGCTTTTGCTT...GAGACGCGTCTCCACTGGAAACAGCTGAAATTGTCTGAAGGACATTTTAGTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp GCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCAACAGGTTCGATGCTGACGTaGTTCAGTTCCATGGGGTCC +
Preference number: 5 (lower is better)
Translates to: ATEFLMHPSPFPTKPFPTGSMLT*FSSMGS
Trigger: GGACCCCATGGAACTGAACAACGTCAGCATCGAACC...TGTTGGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp TGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCAAAGCCAGGATTGGGATaGCATAGGCCGTCCGGGAAT +
Preference number: 5 (lower is better)
Translates to: CATEFLMHPSPFPTKPFPKPGLG*HRPSGN
Trigger: ATTCCCGGACGGCCTATGCAATCCCAATCCTGGCTT...TGGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS TCA 90 bp TCGGCTAGCTTCTTCTTCCCTAAAAACCCATTTGTCAGGAACTTCTaGCTTTCGGCATCTTCATTAGCAAATTGGCTGTTCATGGCGTCC +
Preference number: 5 (lower is better)
Translates to: SASFFFPKNPFVRNF*LSASSLANWLFMAS
Trigger: GGACGCCATGAACAGCCAATTTGCTAATGAAGATGCCGAAAGTCAGAAGTTCCTGACAAATGGGTTTTTAGGGAAGAAGAAGCTAGCCGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000230907.2
ENSMUST00000231039.2
CDS GCA 90 bp CTTGGCTGTCTTCAGCAAAAGGTGAACCGAGTAGAGCGAGAGTATTaGCACAGTAAGCAGCATGATTATAAAAAGGATGATCCCGGTGTT +
Preference number: 5 (lower is better)
Translates to: LGCLQQKVNRVEREY*HSKQHDYKKDDPGV
Trigger: AACACCGGGATCATCCTTTTTATAATCATGCTGCTTACTGTGGCAATACTCTCGCTCTACTCGGTTCACCTTTTGCTGAAGACAGCCAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000230907.2
ENSMUST00000231039.2
CDS CCA 90 bp ATGCTTTCTCGCCCAATTTTTCATAGATTAGAGACCCTCCTTCCTTaGCTGTCTTCAGCAAAAGGTGAACCGAGTAGAGCGAGAGTATTG +
Preference number: 5 (lower is better)
Translates to: MLSRPIFHRLETLLP*LSSAKGEPSRARVL
Trigger: CAATACTCTCGCTCTACTCGGTTCACCTTTTGCTGAAGACAGCCAAGGAAGGAGGGTCTCTAATCTATGAAAAATTGGGCGAGAAAGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000230907.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp ATGTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCGGTTCGATGCTGACGTaGTTCAGTTCCATGGGGTCC +
Preference number: 5 (lower is better)
Translates to: MCATEFLMHPSPFPTKPFGSMLT*FSSMGS
Trigger: GGACCCCATGGAACTGAACAACGTCAGCATCGAACC...GAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp TGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAACCATTCCCAAAGCAAAAGCCAGGATaGGGATTGCATAGGCCGTCC +
Preference number: 5 (lower is better)
Translates to: CATEFLMHPSPFPTKPFPKQKPG*GLHRPS
Trigger: GGACGGCCTATGCAATCCCAATCCTGGCTTTTGCTT...TGGGAATGGTTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS GCA 90 bp GCCGTTGAGGTACCATTCCCCAGTGTTTTCTTCAAGTCCCATGAATaGTCTGATTACTTCAGGCAGTTCGTACTTAATGATGAAGAGGTA +
Preference number: 5 (lower is better)
Translates to: AVEVPFPSVFFKSHE*SDYFRQFVLNDEEV
Trigger: TACCTCTTCATCATTAAGTACGAACTGCCTGAAGTAATCAGAGCATTCATGGGACTTGAAGAAAACACTGGGGAATGGTACCTCAACGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp GTCTTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAGGTTCGATGCTGACGTaGTTCAGTTCCATGGGGTCC +
Preference number: 5 (lower is better)
Translates to: VFGILLIPQTNIPIKTTKGSMLT*FSSMGS
Trigger: GGACCCCATGGAACTGAACAACGTCAGCATCGAACC...TTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp GTCTTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAAAGCCAGGATTGGGATaGCATAGGCCGTCCGGGAAT +
Preference number: 5 (lower is better)
Translates to: VFGILLIPQTNIPIKTTKKPGLG*HRPSGN
Trigger: ATTCCCGGACGGCCTATGCAATCCCAATCCTGGCTT...TTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAAGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp CACAAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCAAGCAAAAGCCAGGATaGGGATTGCATAGGCCGTCC +
Preference number: 5 (lower is better)
Translates to: HKYPMIELEKRLWNLANSKQKPG*GLHRPS
Trigger: GGACGGCCTATGCAATCCCAATCCTGGCTTTTGCTT...GGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp CTCCAATGGACAGATAAGTACCCATGGATTTTTGAGCCCACCAGCTTAATTCCCAATCCAAAGATGTATTaGATGGTAGGCACGAGGATG +
Preference number: 5 (lower is better)
Translates to: LQWTDKYPWIFEPTSLIPNPKMY*MVGTRM
Trigger: CATCCTCGTGCCTACCATCAAATACATCTTTGGATT...GGGAATTAAGCTGGTGGGCTCAAAAATCCATGGGTACTTATCTGTCCATTGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023101.10
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp GTCTTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAAAGCAAAAGCCAGGATaGGGATTGCATAGGCCGTCC +
Preference number: 5 (lower is better)
Translates to: VFGILLIPQTNIPIKTTKKQKPG*GLHRPS
Trigger: GGACGGCCTATGCAATCCCAATCCTGGCTTTTGCTT...TTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp TTTCTCTTCCACAAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTCACAAAGTATTTTGGTaGGCATTTCTCAGCACCCTG +
Preference number: 5 (lower is better)
Translates to: FLFHKYPMIELEKRLWNLHKVFW*AFLSTL
Trigger: CAGGGTGCTGAGAAATGCCAACCAAAATACTTTGTG...AAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTTGTGGAAGAGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp CTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGTCCTTCAGACAACACAAAGTATTTTGGTaGGCATTTCTCAGCACCCTG +
Preference number: 5 (lower is better)
Translates to: LIPQTNIPIKTTKMSFRQHKVFW*AFLSTL
Trigger: CAGGGTGCTGAGAAATGCCAACCAAAATACTTTGTG...TTGTCTGAAGGACATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp CCCAACAAAACCCATAATTTTCTCTTCCACAAGTATCCCATGATAGAGCTAGAAAATCCAAAGATGTATTaGATGGTAGGCACGAGGATG +
Preference number: 5 (lower is better)
Translates to: PNKTHNFLFHKYPMIELENPKMY*MVGTRM
Trigger: CATCCTCGTGCCTACCATCAAATACATCTTTGGATT...TTCTAGCTCTATCATGGGATACTTGTGGAAGAGAAAATTATGGGTTTTGTTGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp CACAAGTATCCCATGATAGAGCTAGAAAAACGTCTTTGGAATCTTGCTAATTCCAATCCAAAGATGTATTaGATGGTAGGCACGAGGATG +
Preference number: 5 (lower is better)
Translates to: HKYPMIELEKRLWNLANSNPKMY*MVGTRM
Trigger: CATCCTCGTGCCTACCATCAAATACATCTTTGGATT...GGAATTAGCAAGATTCCAAAGACGTTTTTCTAGCTCTATCATGGGATACTTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp GTTAAAATGTGTGCCACAGAATTTTTAATGCATCCTTCACCATTCCCAACAAAAATCTTCATTAGCAAATaGGCTGTTCATGGCGTCCTT +
Preference number: 5 (lower is better)
Translates to: VKMCATEFLMHPSPFPTKIFISK*AVHGVL
Trigger: AAGGACGCCATGAACAGCCAATTTGCTAATGAAGAT...TTTTGTTGGGAATGGTGAAGGATGCATTAAAAATTCTGTGGCACACATTTTAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000231039.2
CDS-3UTR CAA 90 bp TTTGGAATCTTGCTAATTCCTCAGACTAACATCCCAATCAAGACAACTAAAATGAATCCAAAGATGTATTaGATGGTAGGCACGAGGATG +
Preference number: 5 (lower is better)
Translates to: FGILLIPQTNIPIKTTKMNPKMY*MVGTRM
Trigger: CATCCTCGTGCCTACCATCAAATACATCTTTGGATT...CATTTTAGTTGTCTTGATTGGGATGTTAGTCTGAGGAATTAGCAAGATTCCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS TCA 72 bp TCAGCACCCTGGGCTTCGTACTCCACGCCATTGCTGTaGAGAGGGCCTGCGACCTGCTTCTCATCCAGCCCA +
Preference number: 6 (lower is better)
Translates to: SAPWASYSTPLL*RGPATCFSSSP
Trigger: TGGGCTGGATGAGAAGCAGGTCGCAGGCCCTCTTCACAGCAATGGCGTGGAGTACGAAGCCCAGGGTGCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS GCA 72 bp CACGATGGGCACGGTCAGTGTCACTGCCACCAGGACTaGCAGGCGCACCATGAGAAGAGCCGTATCAAATGT +
Preference number: 6 (lower is better)
Translates to: HDGHGQCHCHQD*QAHHEKSRIKC
Trigger: ACATTTGATACGGCTCTTCTCATGGTGCGCCTGGCAGTCCTGGTGGCAGTGACACTGACCGTGCCCATCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CCA 72 bp AAGAGGGCCTGCGACCTGCTTCTCATCCAGCCCAGCTaGGTTGTGGTGAGCGTAATCCATCATGAAGTTCAC +
Preference number: 6 (lower is better)
Translates to: KRACDLLLIQPS*VVVSVIHHEVH
Trigger: GTGAACTTCATGATGGATTACGCTCACCACAACCCAGCTGGGCTGGATGAGAAGCAGGTCGCAGGCCCTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CCA 72 bp GATCCCGAAATGCTTCAGCCAGCTGAAGGGTTTCCTTaGAAACAGCAGTGTGATCACCGAAGTACGGATCGG +
Preference number: 6 (lower is better)
Translates to: DPEMLQPAEGFP*KQQCDHRSTDR
Trigger: CCGATCCGTACTTCGGTGATCACACTGCTGTTTCCAAGGAAACCCTTCAGCTGGCTGAAGCATTTCGGGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CAA 90 bp AGGGCCGCAAGAAGGTACATGACGAGCATGCCTGAGATGGAAATGTaGGACACCGTCTGCATCTTTCTGCGGGATCGATCTTTAAGCTCG +
Preference number: 6 (lower is better)
Translates to: RAARRYMTSMPEMEM*DTVCIFLRDRSLSS
Trigger: CGAGCTTAAAGATCGATCCCGCAGAAAGATGCAGACGGTGTCCAACATTTCCATCTCAGGCATGCTCGTCATGTACCTTCTTGCGGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS TCA 72 bp CCCGAGCTCTCCGAGTCATTAGGCAGCGAGATCATGTaGATCGGAAGTGTGTTGTTGAACGTCAGATTTCCG +
Preference number: 6 (lower is better)
Translates to: PELSESLGSEIM*IGSVLLNVRFP
Trigger: CGGAAATCTGACGTTCAACAACACACTTCCGATTCACATGATCTCGCTGCCTAATGACTCGGAGAGCTCGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS TCA 72 bp AAAGAGGGCCGCAAGAAGGTACATGACGAGCATGCCTaGGATGGAAATGTTGGACACCGTCTGCATCTTTCT +
Preference number: 6 (lower is better)
Translates to: KEGRKKVHDEHA*DGNVGHRLHLS
Trigger: AGAAAGATGCAGACGGTGTCCAACATTTCCATCTCAGGCATGCTCGTCATGTACCTTCTTGCGGCCCTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS GCA 72 bp TTGTTGAGTGCGATGATGATTGCAGCGATCCCGAAATaGTTCAGCCAGCTGAAGGGTTTCCTTGGAAACAGC +
Preference number: 6 (lower is better)
Translates to: LLSAMMIAAIPK*FSQLKGFLGNS
Trigger: GCTGTTTCCAAGGAAACCCTTCAGCTGGCTGAAGCATTTCGGGATCGCTGCAATCATCATCGCACTCAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CAA 72 bp AGAAGGTACATGACGAGCATGCCTGAGATGGAAATGTaGGACACCGTCTGCATCTTTCTGCGGGATCGATCT +
Preference number: 6 (lower is better)
Translates to: RRYMTSMPEMEM*DTVCIFLRDRS
Trigger: AGATCGATCCCGCAGAAAGATGCAGACGGTGTCCAACATTTCCATCTCAGGCATGCTCGTCATGTACCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CAA 90 bp CCAAAGATGTATTTGATGGTAGGCACGAGGATGACCAGGATGTTGTaGAGTGCGATGATGATTGCAGCGATCCCGAAATGCTTCAGCCAG +
Preference number: 6 (lower is better)
Translates to: PKMYLMVGTRMTRML*SAMMIAAIPKCFSQ
Trigger: CTGGCTGAAGCATTTCGGGATCGCTGCAATCATCATCGCACTCAACAACATCCTGGTCATCCTCGTGCCTACCATCAAATACATCTTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CCA 72 bp CGCCCAATTTTTCATAGATTAGAGACCCTCCTTCCTTaGCTGTCTTCAGCAAAAGGTGAACCGAGTAGAGCG +
Preference number: 6 (lower is better)
Translates to: RPIFHRLETLLP*LSSAKGEPSRA
Trigger: CGCTCTACTCGGTTCACCTTTTGCTGAAGACAGCCAAGGAAGGAGGGTCTCTAATCTATGAAAAATTGGGCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000230907.2
ENSMUST00000231039.2
CDS CAA 72 bp TATTTGATGGTAGGCACGAGGATGACCAGGATGTTGTaGAGTGCGATGATGATTGCAGCGATCCCGAAATGC +
Preference number: 6 (lower is better)
Translates to: YLMVGTRMTRML*SAMMIAAIPKC
Trigger: GCATTTCGGGATCGCTGCAATCATCATCGCACTCAACAACATCCTGGTCATCCTCGTGCCTACCATCAAATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CAA 90 bp CCCATTTGTCAGGAACTTCTGACTTTCGGCATCTTCATTAGCAAATaGGCTGTTCATGGCGTCCTTGTCGGAGTTTTCCATGCCGGTGTA +
Preference number: 6 (lower is better)
Translates to: PICQELLTFGIFISK*AVHGVLVGVFHAGV
Trigger: TACACCGGCATGGAAAACTCCGACAAGGACGCCATGAACAGCCAATTTGCTAATGAAGATGCCGAAAGTCAGAAGTTCCTGACAAATGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000230907.2
ENSMUST00000231039.2
CDS CAA 90 bp AATCCAAAGATGTATTTGATGGTAGGCACGAGGATGACCAGGATGTaGTTGAGTGCGATGATGATTGCAGCGATCCCGAAATGCTTCAGC +
Preference number: 6 (lower is better)
Translates to: NPKMYLMVGTRMTRM*LSAMMIAAIPKCFS
Trigger: GCTGAAGCATTTCGGGATCGCTGCAATCATCATCGCACTCAACAACATCCTGGTCATCCTCGTGCCTACCATCAAATACATCTTTGGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS TCA 72 bp AAGCCAGGATTGGGATTGCATAGGCCGTCCGGGAATTaGACACAAAGTATTTTGGTTGGCATTTCTCAGCAC +
Preference number: 6 (lower is better)
Translates to: KPGLGLHRPSGN*TQSILVGISQH
Trigger: GTGCTGAGAAATGCCAACCAAAATACTTTGTGTTCAATTCCCGGACGGCCTATGCAATCCCAATCCTGGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CCA 72 bp ATTCCAGTCACAAGGAAGACCAAAGCCCCAATCTTCTaGGGTGATCTTAGAGGTTCTTTCTTGACGAGCTTG +
Preference number: 6 (lower is better)
Translates to: IPVTRKTKAPIF*GDLRGSFLTSL
Trigger: CAAGCTCGTCAAGAAAGAACCTCTAAGATCACCCCAGAAGATTGGGGCTTTGGTCTTCCTTGTGACTGGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CAA 72 bp ATGTATTTGATGGTAGGCACGAGGATGACCAGGATGTaGTTGAGTGCGATGATGATTGCAGCGATCCCGAAA +
Preference number: 6 (lower is better)
Translates to: MYLMVGTRMTRM*LSAMMIAAIPK
Trigger: TTTCGGGATCGCTGCAATCATCATCGCACTCAACAACATCCTGGTCATCCTCGTGCCTACCATCAAATACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CAA 72 bp GTGGCAGAAGAAGCCCCTATGAATCCAAAGATGTATTaGATGGTAGGCACGAGGATGACCAGGATGTTGTTG +
Preference number: 6 (lower is better)
Translates to: VAEEAPMNPKMY*MVGTRMTRMLL
Trigger: CAACAACATCCTGGTCATCCTCGTGCCTACCATCAAATACATCTTTGGATTCATAGGGGCTTCTTCTGCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS CAA 72 bp CAGGAACTTCTGACTTTCGGCATCTTCATTAGCAAATaGGCTGTTCATGGCGTCCTTGTCGGAGTTTTCCAT +
Preference number: 6 (lower is better)
Translates to: QELLTFGIFISK*AVHGVLVGVFH
Trigger: ATGGAAAACTCCGACAAGGACGCCATGAACAGCCAATTTGCTAATGAAGATGCCGAAAGTCAGAAGTTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000230907.2
ENSMUST00000231039.2
CDS GCA 72 bp GTACCATTCCCCAGTGTTTTCTTCAAGTCCCATGAATaGTCTGATTACTTCAGGCAGTTCGTACTTAATGAT +
Preference number: 6 (lower is better)
Translates to: VPFPSVFFKSHE*SDYFRQFVLND
Trigger: ATCATTAAGTACGAACTGCCTGAAGTAATCAGAGCATTCATGGGACTTGAAGAAAACACTGGGGAATGGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000231039.2
CDS TCA 72 bp TTCTTCTTCCCTAAAAACCCATTTGTCAGGAACTTCTaGCTTTCGGCATCTTCATTAGCAAATTGGCTGTTC +
Preference number: 6 (lower is better)
Translates to: FFFPKNPFVRNF*LSASSLANWLF
Trigger: GAACAGCCAATTTGCTAATGAAGATGCCGAAAGTCAGAAGTTCCTGACAAATGGGTTTTTAGGGAAGAAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000023101.10
ENSMUST00000166223.2
ENSMUST00000230086.2
ENSMUST00000230907.2
ENSMUST00000231039.2