RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC38A3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000010064

Ensembl transcript IDs: ENSMUST00000010208.14, ENSMUST00000167868.8, ENSMUST00000177567.8, ENSMUST00000192211.2, ENSMUST00000192323.6, ENSMUST00000192990.6, ENSMUST00000193932.6, ENSMUST00000195739.2, ENSMUST00000195843.2

Found 278 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGGGTCTGAGCACGCCGCCACCGCTTGGTCTGAGAGGCAGGAGGTaGGGTGGGGGTGGAGGGTCTTGCTCAGTTCCCACTCTGGTGCAG +
Preference number: 1 (lower is better)
Translates to: LGLSTPPPLGLRGRR*GGGGGSCSVPTLVQ
Trigger: CTGCACCAGAGTGGGAACTGAGCAAGACCCTCCACCCCCACCCCACCTCCTGCCTCTCAGACCAAGCGGTGGCGGCGTGCTCAGACCCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
3UTR TCA 90 bp CTTCAGGCCTGGGTTTTCTGGCTCTGTGTGCCCCTACTGCCTGTGTaGCCTCAGGAGGTGGCCGCTAGGCCTCAGTGTGCACAGCTGCTG +
Preference number: 1 (lower is better)
Translates to: LQAWVFWLCVPLLPV*PQEVAARPQCAQLL
Trigger: CAGCAGCTGTGCACACTGAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCAGTAGGGGCACACAGAGCCAGAAAACCCAGGCCTGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR GCA 90 bp GCAGGACTAGGGGATGTCTTCAGGCCTGGGTTTTCTGGCTCTGTGTaGCCCTACTGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTC +
Preference number: 1 (lower is better)
Translates to: AGLGDVFRPGFSGSV*PYCLCDLRRWPLGL
Trigger: GAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCAGTAGGGGCACACAGAGCCAGAAAACCCAGGCCTGAAGACATCCCCTAGTCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR GCA 90 bp CGGCCACTCGCACACACAAGATCAGCACATCAAACGGGTCCACCTTaGTGTAGGTGTGCAGCAGCTCCGACTCCACCCCGTCTGTGGCAG +
Preference number: 1 (lower is better)
Translates to: RPLAHTRSAHQTGPP*CRCAAAPTPPRLWQ
Trigger: CTGCCACAGACGGGGTGGAGTCGGAGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTGATGTGCTGATCTTGTGTGTGCGAGTGGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192211.2
3UTR CCA 90 bp CTTCTCCCAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTaGGAGTCCCAGCCTCCCCTGAACTGTGAAGGCCCACAGCAGGGA +
Preference number: 1 (lower is better)
Translates to: LLPAVECKSWPRREV*ESQPPLNCEGPQQG
Trigger: TCCCTGCTGTGGGCCTTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTGGGAGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR TCA 90 bp TGTCCCACTTCCTGGCGCTCATTAATTCCTCCCCACCTCACCCCGTaGGAAAGCAGGTCTGTGCTGAACTTGGCCCAGGCCCAGAGCTGG +
Preference number: 1 (lower is better)
Translates to: CPTSWRSLIPPHLTP*ESRSVLNLAQAQSW
Trigger: CCAGCTCTGGGCCTGGGCCAAGTTCAGCACAGACCTGCTTTCTCACGGGGTGAGGTGGGGAGGAATTAATGAGCGCCAGGAAGTGGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
3UTR CCA 90 bp CCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTaGGCCTGGCCTCCCTTCTCCCAGCAGTGGAATGTAAGTCATGGC +
Preference number: 1 (lower is better)
Translates to: PAWLLGSLTPKGRLL*AWPPFSQQWNVSHG
Trigger: GCCATGACTTACATTCCACTGCTGGGAGAAGGGAGGCCAGGCCCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR GCA 90 bp CTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCAGTGTGCACAGCTaGTGGAGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACA +
Preference number: 1 (lower is better)
Translates to: LCDLRRWPLGLSVHS*WRRMEGFMGSKAMT
Trigger: TGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCTCCAGCAGCTGTGCACACTGAGGCCTAGCGGCCACCTCCTGAGGTCACACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CCA 90 bp CTGCAGCTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTaGCTCTTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAG +
Preference number: 1 (lower is better)
Translates to: LQLWSPAGVVHGPWS*LFNKNLPTERIWVE
Trigger: CTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAGCTGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR TCA 90 bp CCAGTGGCAATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCTaGAACAGCATCTGCTGGATAGCACGTCGTACCGGGAACAGAACA +
Preference number: 1 (lower is better)
Translates to: PVAMSTCRNQLNSWF*NSICWIARRTGNRT
Trigger: TGTTCTGTTCCCGGTACGACGTGCTATCCAGCAGATGCTGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
3UTR CCA 90 bp CCTTGGTCCTGGCTCTTCAACAAAAACCTTCCAACGGAGAGGATATaGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTCCCCG +
Preference number: 1 (lower is better)
Translates to: PWSWLFNKNLPTERI*VEPEAIVFTESFSP
Trigger: CGGGGAGAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGACCAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp GGCTCTGTGTGCCCCTACTGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCTACTTAGCCCCTGGCTaGGAGCAGGGGCTGGAGAGA +
Preference number: 2 (lower is better)
Translates to: GSVCPYCLCDLRRWPLGLYLAPG*EQGLER
Trigger: TCTCTCCAGCCCCTGCTCCCAGCCAGGGGCTAAGTA...GAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCAGTAGGGGCACACAGAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR TCA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGCCCCTACTGCCTGTGTaGCCTCAGGAGGTGGCCGCT +
Preference number: 2 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWPLLPV*PQEVAA
Trigger: AGCGGCCACCTCCTGAGGTCACACAGGCAGTAGGGG...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR TCA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCCCCCTACTGCCTGTGTaGCCTCAGGAGGTGGCCGCT +
Preference number: 2 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPPLLPV*PQEVAA
Trigger: AGCGGCCACCTCCTGAGGTCACACAGGCAGTAGGGG...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
62% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR TCA 90 bp GGGCTGACAAGTAGTCTAAGAGCTGGTGGGCTGCAGGGGCCCTATCCTGAGGCTCCCCACCTCACCCCGTaGGAAAGCAGGTCTGTGCTG +
Preference number: 2 (lower is better)
Translates to: GLTSSLRAGGLQGPYPEAPHLTP*ESRSVL
Trigger: CAGCACAGACCTGCTTTCTCACGGGGTGAGGTGGGG...AGCCTCAGGATAGGGCCCCTGCAGCCCACCAGCTCTTAGACTACTTGTCAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
3UTR-3UTR GCA 90 bp GGGCTGACAAGTAGTCTAAGAGCTGGTGGGCTGCAGGGGCCCTATCCTGAGGCTAGTGCAGGAAGCCCCTaGAGCTCTGGAGCCCAGCAG +
Preference number: 2 (lower is better)
Translates to: GLTSSLRAGGLQGPYPEASAGSP*SSGAQQ
Trigger: CTGCTGGGCTCCAGAGCTGCAGGGGCTTCCTGCACT...AGCCTCAGGATAGGGCCCCTGCAGCCCACCAGCTCTTAGACTACTTGTCAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
3UTR-3UTR GCA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAAAGTGCAGGAAGCCCCTaGAGCTCTGGAGCCCAGCAG +
Preference number: 2 (lower is better)
Translates to: KSWPRREVWESQPPLNCESAGSP*SSGAQQ
Trigger: CTGCTGGGCTCCAGAGCTGCAGGGGCTTCCTGCACT...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGCCCTTACTTAGCCCCTaGCTGGGAGCAGGGGCTGGA +
Preference number: 2 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWPLLSP*LGAGAG
Trigger: TCCAGCCCCTGCTCCCAGCCAGGGGCTAAGTAAGGG...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR GCA 90 bp GGGCTGACAAGTAGTCTAAGAGCTGGTGGGCTGCAGGGGCCCTATCCTGAGGCTGGGGGTGGAGGGTCTTaGTCAGTTCCCACTCTGGTG +
Preference number: 2 (lower is better)
Translates to: GLTSSLRAGGLQGPYPEAGGGGS*SVPTLV
Trigger: CACCAGAGTGGGAACTGAGCAAGACCCTCCACCCCC...AGCCTCAGGATAGGGCCCCTGCAGCCCACCAGCTCTTAGACTACTTGTCAGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
3UTR-3UTR CCA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAATACTTAGCCCCTGGCTaGGAGCAGGGGCTGGAGAGA +
Preference number: 2 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKYLAPG*EQGLER
Trigger: TCTCTCCAGCCCCTGCTCCCAGCCAGGGGCTAAGTA...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAATACTTAGCCCCTGGCTaGGAGCAGGGGCTGGAGAGA +
Preference number: 2 (lower is better)
Translates to: KSWPRREVWESQPPLNCEYLAPG*EQGLER
Trigger: TCTCTCCAGCCCCTGCTCCCAGCCAGGGGCTAAGTA...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp GAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTACTTAGCCCCTGGCTaGGAGCAGGGGCTGGAGAGA +
Preference number: 2 (lower is better)
Translates to: EPSRGGPWALVLALQQKPYLAPG*EQGLER
Trigger: TCTCTCCAGCCCCTGCTCCCAGCCAGGGGCTAAGTA...AGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAACAGGCCTGGGTTTTCTaGCTCTGTGTGCCCCTACTG +
Preference number: 2 (lower is better)
Translates to: KSWPRREVWESQPPLNCEQAWVF*LCVPLL
Trigger: CAGTAGGGGCACACAGAGCCAGAAAACCCAGGCCTG...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR TCA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGCTCAGCAGAACCTGCTaGCCCCAAATATGGGATGGG +
Preference number: 2 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWLSRTC*PQIWDG
Trigger: CCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAG...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR TCA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCTCAGCAGAACCTGCTaGCCCCAAATATGGGATGGG +
Preference number: 2 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLLSRTC*PQIWDG
Trigger: CCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAG...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR GCA 90 bp GCCAGTGGCAATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCTGAAACAGGTGGCAATGAGCACGTaGCGCAACCAGCTGAACTCC +
Preference number: 2 (lower is better)
Translates to: ASGNEHVPQPAELLVLKQVAMST*RNQLNS
Trigger: GGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCAC...CTGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCACTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
3UTR-3UTR CCA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCCCAACGGAGAGGATATaGGTGGAGCCAGAGGCCATA +
Preference number: 2 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPPTERI*VEPEAI
Trigger: TATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR GCA 90 bp CCAAATATGGGATGGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGAGTGCAGGAAGCCCCTaGAGCTCTGGAGCCCAGCAG +
Preference number: 2 (lower is better)
Translates to: PNMGWDRVPYGGEGRRQESAGSP*SSGAQQ
Trigger: CTGCTGGGCTCCAGAGCTGCAGGGGCTTCCTGCACT...CTCTTGTCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp AGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTCCAACGGAGAGGATATaGGTGGAGCCAGAGGCCATA +
Preference number: 2 (lower is better)
Translates to: SPAGVVHGPWSWLFNKNLPTERI*VEPEAI
Trigger: TATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG...AAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp AGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACAGCCCCACCCTGTTCCCCAACGGAGAGGATATaGGTGGAGCCAGAGGCCATA +
Preference number: 2 (lower is better)
Translates to: RRMEGFMGSKAMTAPPCSPTERI*VEPEAI
Trigger: TATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG...GGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCGCTGCTGGAGGAGGATaGAGGGTTTCATGGGATCTA +
Preference number: 2 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPAAGGG*RVSWDL
Trigger: TAGATCCCATGAAACCCTCCATCCTCCTCCAGCAGC...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCGGATGTCTTCAGGCCTaGGTTTTCTGGCTCTGTGTG +
Preference number: 2 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPGCLQA*VFWLCV
Trigger: CACACAGAGCCAGAAAACCCAGGCCTGAAGACATCC...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAACATGGGCCTTGGTCCTaGCTCTTCAACAAAAACCTT +
Preference number: 2 (lower is better)
Translates to: KSWPRREVWESQPPLNCEHGPWS*LFNKNL
Trigger: AAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATG...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CAA 90 bp GGAGAGGGAAGAAGACAAGAGTACCCAAGATTTGGGGCCCAAGTGTaGGAAACGGGGCTGGAGATCAGGGATGAGCCCTTGGGTTTAGAC +
Preference number: 2 (lower is better)
Translates to: GEGRRQEYPRFGAQV*ETGLEIRDEPLGLD
Trigger: GTCTAAACCCAAGGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTTGTCTTCTTCCCTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGGCTGCTGGAGGAGGATaGAGGGTTTCATGGGATCTA +
Preference number: 2 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGAAGGG*RVSWDL
Trigger: TAGATCCCATGAAACCCTCCATCCTCCTCCAGCAGC...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGGGATGTCTTCAGGCCTaGGTTTTCTGGCTCTGTGTG +
Preference number: 2 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGGCLQA*VFWLCV
Trigger: CACACAGAGCCAGAAAACCCAGGCCTGAAGACATCC...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CAA 90 bp ATCCCAAATATGCCCAAGATGTTGGGGGCGAAGATAACCAGCAGATaGATGCACGTAAGCAGGCCAGTGGCAATGAGCACGTGCCGCAAC +
Preference number: 2 (lower is better)
Translates to: IPNMPKMLGAKITSR*MHVSRPVAMSTCRN
Trigger: GTTGCGGCACGTGCTCATTGCCACTGGCCTGCTTACGTGCATCAATCTGCTGGTTATCTTCGCCCCCAACATCTTGGGCATATTTGGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
3UTR-3UTR GCA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATTTTTCTGGCTCTGTGTaGCCCTACTGCCTGTGTGAC +
Preference number: 2 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYFSGSV*PYCLCD
Trigger: GTCACACAGGCAGTAGGGGCACACAGAGCCAGAAAA...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CCA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATGTGGTCCATGGGCCTTaGTCCTGGCTCTTCAACAAA +
Preference number: 2 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYVVHGP*SWLFNK
Trigger: TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCAC...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR TCA 90 bp CACGTGCCGCAACCAGCTGAACTCCTGGTTCTGAAACAGCATCTGCTGGATAGCCTGAACTCCTGGTTCTaGAACAGCATCTGCTGGATA +
Preference number: 2 (lower is better)
Translates to: HVPQPAELLVLKQHLLDSLNSWF*NSICWI
Trigger: TATCCAGCAGATGCTGTTTCAGAACCAGGAGTTCAG...GCTATCCAGCAGATGCTGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
3UTR-3UTR CCA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATCATGGGCCTTGGTCCTaGCTCTTCAACAAAAACCTT +
Preference number: 2 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYHGPWS*LFNKNL
Trigger: AAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATG...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR TCA 90 bp ACCAATGATCCCAAATATGCCCAAGATGTTGGGGGCGAAGATAACCAGCAGATTCGTGCCGCAACCAGCTaGACTCCTGGTTCTGAAACA +
Preference number: 2 (lower is better)
Translates to: TNDPKYAQDVGGEDNQQIRAATS*TPGSET
Trigger: TGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACG...AATCTGCTGGTTATCTTCGCCCCCAACATCTTGGGCATATTTGGGATCATTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
3UTR GCA 72 bp CCCCCTGTGTGGAGCTGCTGGGGATGCGCCTCACGTTaGCTCCTTCCGCAGGCTCCTCTCTGTCCCACTTCC +
Preference number: 3 (lower is better)
Translates to: PPVWSCWGCASR*LLPQAPLCPTS
Trigger: GGAAGTGGGACAGAGAGGAGCCTGCGGAAGGAGGCAACGTGAGGCGCATCCCCAGCAGCTCCACACAGGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
3UTR CCA 72 bp TCTGTGTGCCCCTACTGCCTGTGTGACCTCAGGAGGTaGCCGCTAGGCCTCAGTGTGCACAGCTGCTGGAGG +
Preference number: 3 (lower is better)
Translates to: SVCPYCLCDLRR*PLGLSVHSCWR
Trigger: CCTCCAGCAGCTGTGCACACTGAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCAGTAGGGGCACACAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CCA 72 bp CTGGCCTCCCTTCTCCCAGCAGTGGAATGTAAGTCATaGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCC +
Preference number: 3 (lower is better)
Translates to: LASLLPAVECKS*PRREVWESQPP
Trigger: GGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTGGGAGAAGGGAGGCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CAA 90 bp TGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCAGTGTGCACAGCTGCTGGGGTGGTCCATGGGCCTaGGTCCTGGCTCTTCAACAA +
Preference number: 3 (lower is better)
Translates to: CLCDLRRWPLGLSVHSCWGGPWA*VLALQQ
Trigger: TTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACC...CCAGCAGCTGTGCACACTGAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CCA 72 bp AGGAGGTGGCCGCTAGGCCTCAGTGTGCACAGCTGCTaGAGGAGGATGGAGGGTTTCATGGGATCTAAGGCG +
Preference number: 3 (lower is better)
Translates to: RRWPLGLSVHSC*RRMEGFMGSKA
Trigger: CGCCTTAGATCCCATGAAACCCTCCATCCTCCTCCAGCAGCTGTGCACACTGAGGCCTAGCGGCCACCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CCA 72 bp GCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTaGGAGTCCCAGCCTCCCCTGAACTGTGAAGGCCCA +
Preference number: 3 (lower is better)
Translates to: AVECKSWPRREV*ESQPPLNCEGP
Trigger: TGGGCCTTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CAA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGGGTGGTCCATGGGCCTaGGTCCTGGCTCTTCAACAA +
Preference number: 3 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWGGPWA*VLALQQ
Trigger: TTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACC...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR TCA 72 bp GGAGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATaGCAGCCCCACCCTGTTCCTAGTGCAGGAAGCCCC +
Preference number: 3 (lower is better)
Translates to: GGGWRVSWDLRR*QPHPVPSAGSP
Trigger: GGGGCTTCCTGCACTAGGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CCA 72 bp CAGCTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTaGTCCTGGCTCTTCAACAAAAACCTTCCAACGGAG +
Preference number: 3 (lower is better)
Translates to: QLWSPAGVVHGP*SWLFNKNLPTE
Trigger: CTCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR GCA 72 bp GCACACACAAGATCAGCACATCAAACGGGTCCACCTTaGTGTAGGTGTGCAGCAGCTCCGACTCCACCCCGT +
Preference number: 3 (lower is better)
Translates to: AHTRSAHQTGPP*CRCAAAPTPPR
Trigger: ACGGGGTGGAGTCGGAGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTGATGTGCTGATCTTGTGTGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192211.2
3UTR-3UTR CAA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGGGTGGTCCATGGGCCTaGGTCCTGGCTCTTCAACAA +
Preference number: 3 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGGGPWA*VLALQQ
Trigger: TTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACC...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR TCA 72 bp ATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCTaGAACAGCATCTGCTGGATAGCACGTCGTACCGGG +
Preference number: 3 (lower is better)
Translates to: MSTCRNQLNSWF*NSICWIARRTG
Trigger: CCCGGTACGACGTGCTATCCAGCAGATGCTGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
3UTR CCA 72 bp TGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTaGCTCTTCAACAAAAACCTTCCAACGGAGAGGATA +
Preference number: 3 (lower is better)
Translates to: WSPAGVVHGPWS*LFNKNLPTERI
Trigger: TATCCTCTCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CAA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATGGTGGTCCATGGGCCTaGGTCCTGGCTCTTCAACAA +
Preference number: 3 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYGGPWA*VLALQQ
Trigger: TTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACC...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CAA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATTTTGGGGCCCAAGTGTaGGAAACGGGGCTGGAGATC +
Preference number: 3 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYFGAQV*ETGLEI
Trigger: GATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAA...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR-3UTR CAA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCAAGAGTACCCAAGATTaGGGGCCCAAGTGTTGGAAA +
Preference number: 3 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLKSTQD*GPKCWK
Trigger: TTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CCA 72 bp GAAGACAAGAGTACCCAAGATTTGGGGCCCAAGTGTTaGAAACGGGGCTGGAGATCAGGGATGAGCCCTTGG +
Preference number: 3 (lower is better)
Translates to: EDKSTQDLGPKC*KRGWRSGMSPW
Trigger: CCAAGGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTTGTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CCA 72 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATaGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGA +
Preference number: 3 (lower is better)
Translates to: HPQQNLLTPNMG*DRVPYGGEGRR
Trigger: TCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CCA 72 bp TGGCTCTTCAACAAAAACCTTCCAACGGAGAGGATATaGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCT +
Preference number: 3 (lower is better)
Translates to: WLFNKNLPTERI*VEPEAIVFTES
Trigger: AGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAAGAGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp GGGCTGACAAGTAGTCTAAGAGCTGGTGGGCTGCAGGGGCCCTATCCTGAGGCTAATGGCCAGGGCTGCTaGCAGCTTCCCCGGGGTCCC +
Preference number: 4 (lower is better)
Translates to: GLTSSLRAGGLQGPYPEANGQGC*QLPRGP
Trigger: GGGACCCCGGGGAAGCTGGCAGCAGCCCTGGCCATT...AGCCTCAGGATAGGGCCCCTGCAGCCCACCAGCTCTTAGACTACTTGTCAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
CDS-3UTR TCA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAACCCCGTCGTAGAAGGTaGGGTAGCCGAAGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKPRRRR*GSRRGR
Trigger: CCGCCCTCTTCGGCTACCTCACCTTCTACGACGGGG...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp GGCTCTGTGTGCCCCTACTGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCGCCCCTCCAAGTGTTTaGCATTGGGCACCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: GSVCPYCLCDLRRWPLGLAPPSV*HWAPAP
Trigger: TGGAGCTGGTGCCCAATGGCAAACACTTGGAGGGGC...GAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCAGTAGGGGCACACAGAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp TGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCAGTGTGCACAGCTGCTGGTGCCCGTATTGGCCATaGCGTAGGCGAGCCCCAGAA +
Preference number: 4 (lower is better)
Translates to: CLCDLRRWPLGLSVHSCWCPYWP*RRRAPE
Trigger: TTCTGGGGCTCGCCTACGCCATGGCCAATACGGGCA...CCAGCAGCTGTGCACACTGAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp TGCTGTAGGTGTGCAGCAGCTCCGACTCCACCCCGTCTGTGGCAGGCAGGGAGGCGAAGGCGAAAGCCATaGTGGGGATGGTGTATGCTG +
Preference number: 4 (lower is better)
Translates to: CCRCAAAPTPPRLWQAGRRRRKP*WGWCML
Trigger: CAGCATACACCATCCCCATCATGGCTTTCGCCTTCG...CCTCCCTGCCTGCCACAGACGGGGTGGAGTCGGAGCTGCTGCACACCTACAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192211.2
CDS-3UTR TCA 90 bp GGCTCTGTGTGCCCCTACTGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCCGTGCCGCAACCAGCTaGACTCCTGGTTCTGAAACA +
Preference number: 4 (lower is better)
Translates to: GSVCPYCLCDLRRWPLGLRAATS*TPGSET
Trigger: TGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACG...GAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCAGTAGGGGCACACAGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp GCCAGTGGCAATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCTGAAACAGGGGGGCGGTGGACCCTaGCACTGTGGGGAGTGGTAC +
Preference number: 4 (lower is better)
Translates to: ASGNEHVPQPAELLVLKQGGGGP*HCGEWY
Trigger: GTACCACTCCCCACAGTGTCAGGGTCCACCGCCCCC...CTGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCACTGGC
62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000192211.2
CDS-3UTR GCA 90 bp AGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTAATGGCCAGGGCTGCTaGCAGCTTCCCCGGGGTCCC +
Preference number: 4 (lower is better)
Translates to: SPAGVVHGPWSWLFNKNLNGQGC*QLPRGP
Trigger: GGGACCCCGGGGAAGCTGGCAGCAGCCCTGGCCATT...AAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp AGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTCCCCGTCGTAGAAGGTaGGGTAGCCGAAGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: SPAGVVHGPWSWLFNKNLPRRRR*GSRRGR
Trigger: CCGCCCTCTTCGGCTACCTCACCTTCTACGACGGGG...AAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACAGCCCCACCCTGTTCCCGTAATGGCCAGGGCTaGTGCCAGCTTCCCCGGGGT +
Preference number: 4 (lower is better)
Translates to: RRMEGFMGSKAMTAPPCSRNGQG*CQLPRG
Trigger: ACCCCGGGGAAGCTGGCAGCAGCCCTGGCCATTACG...GGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCGTGTCAGGCTCGCCCTaGAGCTGTGCCTTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLVSGSP*SCAFSS
Trigger: AGAGGAGAAGGCACAGCTGCAGGGCGAGCCTGACAC...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp GTGGGGTGGGGGTGGAGGGTCTTGCTCAGTTCCCACTCTGGTGCAGGCAAGCAGCCCTCTCCACAGTGTTaGGTGTCTTCAGTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: VGWGWRVLLSSHSGAGKQPSPQC*VSSVLW
Trigger: CCAGAGGACTGAAGACACCCAACACTGTGGAGAGGG...CTGCTTGCCTGCACCAGAGTGGGAACTGAGCAAGACCCTCCACCCCCACCCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
CDS-3UTR CCA 90 bp TGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCAGTGTGCACAGCTGCTGGCCCTCTCCACAGTGTTaGGTGTCTTCAGTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: CLCDLRRWPLGLSVHSCWPSPQC*VSSVLW
Trigger: CCAGAGGACTGAAGACACCCAACACTGTGGAGAGGG...CCAGCAGCTGTGCACACTGAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp TGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCAGTGTGCACAGCTGCTGGGAGGGTGAAGTAGCTTaGGGTACAGAAGGCCTCAGC +
Preference number: 4 (lower is better)
Translates to: CLCDLRRWPLGLSVHSCWEGEVA*GTEGLS
Trigger: GCTGAGGCCTTCTGTACCCCAAGCTACTTCACCCTC...CCAGCAGCTGTGCACACTGAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp GGCTCTGTGTGCCCCTACTGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCGGTGTATGCTGTCTGTaGGTTGAGGGTGAAGTAGCT +
Preference number: 4 (lower is better)
Translates to: GSVCPYCLCDLRRWPLGLGVCCL*VEGEVA
Trigger: AGCTACTTCACCCTCAACTCACAGACAGCATACACC...GAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCAGTAGGGGCACACAGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CAGCACGGCCACTCGCACACACAAGATCAGCACATCAAACGGGTCCACCTTGCTCCACAGCGTAGAAGGTaGGGTAGCCGAAGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: QHGHSHTQDQHIKRVHLAPQRRR*GSRRGR
Trigger: CCGCCCTCTTCGGCTACCTCACCTTCTACGCTGTGG...AGCAAGGTGGACCCGTTTGATGTGCTGATCTTGTGTGTGCGAGTGGCCGTGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192211.2
CDS-3UTR GCA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAGCCCCTCCAAGTGTTTaGCATTGGGCACCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKAPPSV*HWAPAP
Trigger: TGGAGCTGGTGCCCAATGGCAAACACTTGGAGGGGC...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCGCTCGTAGGCACGGATaGCCACAATCCCCGAAGACT +
Preference number: 4 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLARRHG*PQSPKT
Trigger: AGTCTTCGGGGATTGTGGGCATCCGTGCCTACGAGC...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATAATGGCCAGGGCTGCTaGCAGCTTCCCCGGGGTCCC +
Preference number: 4 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYNGQGC*QLPRGP
Trigger: GGGACCCCGGGGAAGCTGGCAGCAGCCCTGGCCATT...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGCGTAATGGCCAGGGCTaGTGCCAGCTTCCCCGGGGT +
Preference number: 4 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGRNGQG*CQLPRG
Trigger: ACCCCGGGGAAGCTGGCAGCAGCCCTGGCCATTACG...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCGTGTCAGGCTCGCCCTaGAGCTGTGCCTTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPVSGSP*SCAFSS
Trigger: AGAGGAGAAGGCACAGCTGCAGGGCGAGCCTGACAC...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp GGCTCTGTGTGCCCCTACTGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCGACAGGTTGGAGATGTaGTGCATCTTCCTCTTGGAG +
Preference number: 4 (lower is better)
Translates to: GSVCPYCLCDLRRWPLGLDRLEM*CIFLLE
Trigger: CTCCAAGAGGAAGATGCAGCACATCTCCAACCTGTC...GAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCAGTAGGGGCACACAGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAGTGGCAATGAGCACGTaGCGCAACCAGCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKVAMST*RNQLNS
Trigger: GGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCAC...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp TGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCAGTGTGCACAGCTGCTGGCCAAGTGTTTGCCATTaGGCACCAGCTCCACCATCT +
Preference number: 4 (lower is better)
Translates to: CLCDLRRWPLGLSVHSCWPSVCH*APAPPS
Trigger: AGATGGTGGAGCTGGTGCCCAATGGCAAACACTTGG...CCAGCAGCTGTGCACACTGAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAATCTGCCACCACCATGTaGCTGAAGTTGCCGGTGGCA +
Preference number: 4 (lower is better)
Translates to: KSWPRREVWESQPPLNCESATTM*LKLPVA
Trigger: TGCCACCGGCAACTTCAGCCACATGGTGGTGGCAGA...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGTGGTTTCCTCCATGCTaGCTGGTCCCAGAGACCCAG +
Preference number: 4 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWWFPPC*LVPETQ
Trigger: CTGGGTCTCTGGGACCAGCCAGCATGGAGGAAACCA...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CAA 72 bp GCAGCTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTaGGTCCTGGCTCTTCAACAAAAACCTTCCAACGGA +
Preference number: 4 (lower is better)
Translates to: AALEPSRGGPWA*VLALQQKPSNG
Trigger: TCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAGCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAATTGCTGGGACTCTTCTaGAGGAAGCCCTTGCCCTCT +
Preference number: 4 (lower is better)
Translates to: KSWPRREVWESQPPLNCELLGLF*RKPLPS
Trigger: AGAGGGCAAGGGCTTCCTTCAGAAGAGTCCCAGCAA...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCGAAGGCGAAAGCCATaGTGGGGATGGTGTATGCTG +
Preference number: 4 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLRRRKP*WGWCML
Trigger: CAGCATACACCATCCCCATCATGGCTTTCGCCTTCG...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp TGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTCCCCGGTCTCTCTCCCCCGTCGTAGAAGGTaGGGTAGCCGAAGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: WVEPEAIVFTESFSPVSLPRRRR*GSRRGR
Trigger: CCGCCCTCTTCGGCTACCTCACCTTCTACGACGGGG...GAGAGAGACCGGGGAGAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCGCTCGTAGGCACGGATaGCCACAATCCCCGAAGACT +
Preference number: 4 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPARRHG*PQSPKT
Trigger: AGTCTTCGGGGATTGTGGGCATCCGTGCCTACGAGC...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTGTGTCAGGCTCGCCCTaGAGCTGTGCCTTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: SPAGVVHGPWSWLFNKNLVSGSP*SCAFSS
Trigger: AGAGGAGAAGGCACAGCTGCAGGGCGAGCCTGACAC...AAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCAAACGGGTCCACCTTaGTGTAGGTGTGCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLQTGPP*CRCAAA
Trigger: AGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTG...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGCAAACGGGTCCACCTTaGTGTAGGTGTGCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWQTGPP*CRCAAA
Trigger: AGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTG...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAACAAACGGGTCCACCTTaGTGTAGGTGTGCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: KSWPRREVWESQPPLNCEQTGPP*CRCAAA
Trigger: AGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTG...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGGGAACAGGAAAAGGATaGTGCCCGTATTGGCCATGG +
Preference number: 4 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWGTGKG*CPYWPW
Trigger: CCATGGCCAATACGGGCATCATCCTTTTCCTGTTCC...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAATGGCTCCAATGTTCTaGAGCGTAATGGCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKMAPMF*SVMARA
Trigger: AGCCCTGGCCATTACGCTTCAGAACATTGGAGCCAT...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp GGGCTGACAAGTAGTCTAAGAGCTGGTGGGCTGCAGGGGCCCTATCCTGAGGCTATGGCTCCAATGTTCTaGAGCGTAATGGCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: GLTSSLRAGGLQGPYPEAMAPMF*SVMARA
Trigger: AGCCCTGGCCATTACGCTTCAGAACATTGGAGCCAT...AGCCTCAGGATAGGGCCCCTGCAGCCCACCAGCTCTTAGACTACTTGTCAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
CDS-3UTR TCA 90 bp TCCTGGCTCTTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGCCCCGTCGTAGAAGGTaGGGTAGCCGAAGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: SWLFNKNLPTERIWVEPEPRRRR*GSRRGR
Trigger: CCGCCCTCTTCGGCTACCTCACCTTCTACGACGGGG...CTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCCGTGCCGCAACCAGCTaGACTCCTGGTTCTGAAACA +
Preference number: 4 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPRAATS*TPGSET
Trigger: TGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACG...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp TGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCAGTGTGCACAGCTGCTGGCAGATGTGGCACCAATaGTCCCAAATATGCCCAAGA +
Preference number: 4 (lower is better)
Translates to: CLCDLRRWPLGLSVHSCWQMWHQ*SQICPR
Trigger: TCTTGGGCATATTTGGGATCATTGGTGCCACATCTG...CCAGCAGCTGTGCACACTGAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCAGGTTGGAGATGTGCTaGATCTTCCTCTTGGAGGGG +
Preference number: 4 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLRLEMC*IFLLEG
Trigger: CCCCTCCAAGAGGAAGATGCAGCACATCTCCAACCT...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAATTTAGGGGTGGATCTTaGAGGCTCCTTGTCAGTGGG +
Preference number: 4 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKFRGGS*RLLVSG
Trigger: CCCACTGACAAGGAGCCTGCAAGATCCACCCCTAAA...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAACCAAGTGTTTGCCATTaGGCACCAGCTCCACCATCT +
Preference number: 4 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKPSVCH*APAPPS
Trigger: AGATGGTGGAGCTGGTGCCCAATGGCAAACACTTGG...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGGTGTCTTCAGTCCTCTaGGTGTCTGTTGTAGGCACG +
Preference number: 4 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWVSSVL*VSVVGT
Trigger: CGTGCCTACAACAGACACCCAGAGGACTGAAGACAC...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCCCCTCTCCACAGTGTTaGGTGTCTTCAGTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPPSPQC*VSSVLW
Trigger: CCAGAGGACTGAAGACACCCAACACTGTGGAGAGGG...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCAGTGTGGCTCCTTGCTaGGACTCTTCTGAAGGAAGC +
Preference number: 4 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLSVAPC*DSSEGS
Trigger: GCTTCCTTCAGAAGAGTCCCAGCAAGGAGCCACACT...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAGTGTGGCTCCTTGCTaGGACTCTTCTGAAGGAAGC +
Preference number: 4 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKSVAPC*DSSEGS
Trigger: GCTTCCTTCAGAAGAGTCCCAGCAAGGAGCCACACT...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGTGCCCGTATTGGCCATaGCGTAGGCGAGCCCCAGAA +
Preference number: 4 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGCPYWP*RRRAPE
Trigger: TTCTGGGGCTCGCCTACGCCATGGCCAATACGGGCA...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp GTGGGGTGGGGGTGGAGGGTCTTGCTCAGTTCCCACTCTGGTGCAGGCAAGCAGCAGGTTGTGTGCCAATaGGCAAGGAACTTGGAACTT +
Preference number: 4 (lower is better)
Translates to: VGWGWRVLLSSHSGAGKQQVVCQ*ARNLEL
Trigger: AAGTTCCAAGTTCCTTGCCCATTGGCACACAACCTG...CTGCTTGCCTGCACCAGAGTGGGAACTGAGCAAGACCCTCCACCCCCACCCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
CDS-3UTR CCA 90 bp AGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACAGCCCCACCCTGTTCCTCTGCCACCACCATGTaGCTGAAGTTGCCGGTGGCA +
Preference number: 4 (lower is better)
Translates to: RRMEGFMGSKAMTAPPCSSATTM*LKLPVA
Trigger: TGCCACCGGCAACTTCAGCCACATGGTGGTGGCAGA...GGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp GAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTGAGGGTGAAGTAGCTTaGGGTACAGAAGGCCTCAGC +
Preference number: 4 (lower is better)
Translates to: EPSRGGPWALVLALQQKPEGEVA*GTEGLS
Trigger: GCTGAGGCCTTCTGTACCCCAAGCTACTTCACCCTC...AGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CAGCACATCAAACGGGTCCACCTTGCTGTAGGTGTGCAGCAGCTCCGACTCCACGAGGGTGAAGTAGCTTaGGGTACAGAAGGCCTCAGC +
Preference number: 4 (lower is better)
Translates to: QHIKRVHLAVGVQQLRLHEGEVA*GTEGLS
Trigger: GCTGAGGCCTTCTGTACCCCAAGCTACTTCACCCTC...GTGGAGTCGGAGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTGATGTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192211.2
CDS-3UTR TCA 90 bp AGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACAGCCCCACCCTGTTCCTTGCTGGGACTCTTCTaGAGGAAGCCCTTGCCCTCT +
Preference number: 4 (lower is better)
Translates to: RRMEGFMGSKAMTAPPCSLLGLF*RKPLPS
Trigger: AGAGGGCAAGGGCTTCCTTCAGAAGAGTCCCAGCAA...GGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp AGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACAGCCCCACCCTGTTCCCGTGCCGCAACCAGCTaGACTCCTGGTTCTGAAACA +
Preference number: 4 (lower is better)
Translates to: RRMEGFMGSKAMTAPPCSRAATS*TPGSET
Trigger: TGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACG...GGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp AGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTCGTGCCGCAACCAGCTaGACTCCTGGTTCTGAAACA +
Preference number: 4 (lower is better)
Translates to: SPAGVVHGPWSWLFNKNLRAATS*TPGSET
Trigger: TGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACG...AAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACAGCCCCACCCTGTTCCTCTGAAGGAAGCCCTTaGCCTCTCCACAGTGTTGGG +
Preference number: 4 (lower is better)
Translates to: RRMEGFMGSKAMTAPPCSSEGSP*PLHSVG
Trigger: CCCAACACTGTGGAGAGGGCAAGGGCTTCCTTCAGA...GGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp TTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTAAATGGCCAGGGCTGCTaGCAGCTTCCCCGGGGTCCC +
Preference number: 4 (lower is better)
Translates to: FNKNLPTERIWVEPEAIVNGQGC*QLPRGP
Trigger: GGGACCCCGGGGAAGCTGGCAGCAGCCCTGGCCATT...TACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AGTGGCAATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCTGAAACAGCATGTGTCAGGCTCGCCCTaGAGCTGTGCCTTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: SGNEHVPQPAELLVLKQHVSGSP*SCAFSS
Trigger: AGAGGAGAAGGCACAGCTGCAGGGCGAGCCTGACAC...ATGCTGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR GCA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGGACAGGTTGGAGATGTaGTGCATCTTCCTCTTGGAG +
Preference number: 4 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWDRLEM*CIFLLE
Trigger: CTCCAAGAGGAAGATGCAGCACATCTCCAACCTGTC...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAAGACAGGTTGGAGATGTaGTGCATCTTCCTCTTGGAG +
Preference number: 4 (lower is better)
Translates to: KSWPRREVWESQPPLNCEDRLEM*CIFLLE
Trigger: CTCCAAGAGGAAGATGCAGCACATCTCCAACCTGTC...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGGAAATCGGTGAAGTGTaGCTCCTTGCTGGGACTCTT +
Preference number: 4 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWEIGEV*LLAGTL
Trigger: AAGAGTCCCAGCAAGGAGCCACACTTCACCGATTTC...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CACGTGCCGCAACCAGCTGAACTCCTGGTTCTGAAACAGCATCTGCTGGATAGCTCTGCCACCACCATGTaGCTGAAGTTGCCGGTGGCA +
Preference number: 4 (lower is better)
Translates to: HVPQPAELLVLKQHLLDSSATTM*LKLPVA
Trigger: TGCCACCGGCAACTTCAGCCACATGGTGGTGGCAGA...GCTATCCAGCAGATGCTGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR CCA 90 bp AGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTGAGGGTGAAGTAGCTTaGGGTACAGAAGGCCTCAGC +
Preference number: 4 (lower is better)
Translates to: SPAGVVHGPWSWLFNKNLEGEVA*GTEGLS
Trigger: GCTGAGGCCTTCTGTACCCCAAGCTACTTCACCCTC...AAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp AGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACAGCCCCACCCTGTTCCTTCCTCCATGCTGGCTaGTCCCAGAGACCCAGTCAA +
Preference number: 4 (lower is better)
Translates to: RRMEGFMGSKAMTAPPCSFLHAG*SQRPSQ
Trigger: TTGACTGGGTCTCTGGGACCAGCCAGCATGGAGGAA...GGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGTGGTTTCCTCCATGCTaGCTGGTCCCAGAGACCCAG +
Preference number: 4 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGWFPPC*LVPETQ
Trigger: CTGGGTCTCTGGGACCAGCCAGCATGGAGGAAACCA...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CTGGATAGCACGTCGTACCGGGAACAGAACAATCGGAACTGTAAGTGTGACCGCGCTGCATCTTCCTCTTaGAGGGGCTCAGGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: LDSTSYREQNNRNCKCDRAASSS*RGSGWQ
Trigger: CTGCCACCCTGAGCCCCTCCAAGAGGAAGATGCAGC...GCGGTCACACTTACAGTTCCGATTGTTCTGTTCCCGGTACGACGTGCTATCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
3UTR CAA 72 bp GTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCTaGGGTTTAGACTGTGGTCTCTCAGCAGGACTAGGG +
Preference number: 4 (lower is better)
Translates to: VLETGLEIRDEP*GLDCGLSAGLG
Trigger: CCCTAGTCCTGCTGAGAGACCACAGTCTAAACCCAAGGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp AAGCAGGCCAGTGGCAATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCTGGGTGTATGCTGTCTGTaGGTTGAGGGTGAAGTAGCT +
Preference number: 4 (lower is better)
Translates to: KQASGNEHVPQPAELLVLGVCCL*VEGEVA
Trigger: AGCTACTTCACCCTCAACTCACAGACAGCATACACC...CAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCACTGGCCTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR TCA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGCGAAGGCGAAAGCCATaGTGGGGATGGTGTATGCTG +
Preference number: 4 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGRRRKP*WGWCML
Trigger: CAGCATACACCATCCCCATCATGGCTTTCGCCTTCG...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp GATCCCAAATATGCCCAAGATGTTGGGGGCGAAGATAACCAGCAGATTGATGCACCCCGTCGTAGAAGGTaGGGTAGCCGAAGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: DPKYAQDVGGEDNQQIDAPRRRR*GSRRGR
Trigger: CCGCCCTCTTCGGCTACCTCACCTTCTACGACGGGG...TGCATCAATCTGCTGGTTATCTTCGCCCCCAACATCTTGGGCATATTTGGGATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS-3UTR TCA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAACAGATGTGGCACCAATaGTCCCAAATATGCCCAAGA +
Preference number: 4 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKQMWHQ*SQICPR
Trigger: TCTTGGGCATATTTGGGATCATTGGTGCCACATCTG...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAACAGATGTGGCACCAATaGTCCCAAATATGCCCAAGA +
Preference number: 4 (lower is better)
Translates to: KSWPRREVWESQPPLNCEQMWHQ*SQICPR
Trigger: TCTTGGGCATATTTGGGATCATTGGTGCCACATCTG...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATGCCCCTCCAAGTGTTTaGCATTGGGCACCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYAPPSV*HWAPAP
Trigger: TGGAGCTGGTGCCCAATGGCAAACACTTGGAGGGGC...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATGCTCGTAGGCACGGATaGCCACAATCCCCGAAGACT +
Preference number: 4 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYARRHG*PQSPKT
Trigger: AGTCTTCGGGGATTGTGGGCATCCGTGCCTACGAGC...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp TTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTACGTAATGGCCAGGGCTaGTGCCAGCTTCCCCGGGGT +
Preference number: 4 (lower is better)
Translates to: FNKNLPTERIWVEPEAIVRNGQG*CQLPRG
Trigger: ACCCCGGGGAAGCTGGCAGCAGCCCTGGCCATTACG...TACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCGAAATCGGTGAAGTGTaGCTCCTTGCTGGGACTCTT +
Preference number: 4 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPEIGEV*LLAGTL
Trigger: AAGAGTCCCAGCAAGGAGCCACACTTCACCGATTTC...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CCAAATATGGGATGGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGTGCCCGTATTGGCCATaGCGTAGGCGAGCCCCAGAA +
Preference number: 4 (lower is better)
Translates to: PNMGWDRVPYGGEGRRQECPYWP*RRRAPE
Trigger: TTCTGGGGCTCGCCTACGCCATGGCCAATACGGGCA...CTCTTGTCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAACAGGTTGTGTGCCAATaGGCAAGGAACTTGGAACTT +
Preference number: 4 (lower is better)
Translates to: KSWPRREVWESQPPLNCEQVVCQ*ARNLEL
Trigger: AAGTTCCAAGTTCCTTGCCCATTGGCACACAACCTG...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CTGGATAGCACGTCGTACCGGGAACAGAACAATCGGAACTGTAAGTGTGACCGCTCTGCCACCACCATGTaGCTGAAGTTGCCGGTGGCA +
Preference number: 4 (lower is better)
Translates to: LDSTSYREQNNRNCKCDRSATTM*LKLPVA
Trigger: TGCCACCGGCAACTTCAGCCACATGGTGGTGGCAGA...GCGGTCACACTTACAGTTCCGATTGTTCTGTTCCCGGTACGACGTGCTATCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR CCA 90 bp TGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTCCCCGGTCTCTCTCTCTGCCACCACCATGTaGCTGAAGTTGCCGGTGGCA +
Preference number: 4 (lower is better)
Translates to: WVEPEAIVFTESFSPVSLSATTM*LKLPVA
Trigger: TGCCACCGGCAACTTCAGCCACATGGTGGTGGCAGA...GAGAGAGACCGGGGAGAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp TGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTCCCCGGTCTCTCTCTGGTTTCCTCCATGCTaGCTGGTCCCAGAGACCCAG +
Preference number: 4 (lower is better)
Translates to: WVEPEAIVFTESFSPVSLWFPPC*LVPETQ
Trigger: CTGGGTCTCTGGGACCAGCCAGCATGGAGGAAACCA...GAGAGAGACCGGGGAGAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp AAACAGCATCTGCTGGATAGCACGTCGTACCGGGAACAGAACAATCGGAACTGTTGGAGGGGCTCAGGGTaGCAGACGAAGGCGAAAGCC +
Preference number: 4 (lower is better)
Translates to: KQHLLDSTSYREQNNRNCWRGSG*QTKAKA
Trigger: GGCTTTCGCCTTCGTCTGCCACCCTGAGCCCCTCCA...ACAGTTCCGATTGTTCTGTTCCCGGTACGACGTGCTATCCAGCAGATGCTGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS-3UTR CCA 90 bp GGCAATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCTGAAACAGCATCTGTGGACCCTGACACTGTaGGGAGTGGTACTCAGACTC +
Preference number: 4 (lower is better)
Translates to: GNEHVPQPAELLVLKQHLWTLTL*GVVLRL
Trigger: GAGTCTGAGTACCACTCCCCACAGTGTCAGGGTCCA...CAGATGCTGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192211.2
CDS-3UTR TCA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATTTGCTGGGACTCTTCTaGAGGAAGCCCTTGCCCTCT +
Preference number: 4 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYLLGLF*RKPLPS
Trigger: AGAGGGCAAGGGCTTCCTTCAGAAGAGTCCCAGCAA...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp TGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTCCCCGGTCTCTCTCTTGCTGGGACTCTTCTaGAGGAAGCCCTTGCCCTCT +
Preference number: 4 (lower is better)
Translates to: WVEPEAIVFTESFSPVSLLLGLF*RKPLPS
Trigger: AGAGGGCAAGGGCTTCCTTCAGAAGAGTCCCAGCAA...GAGAGAGACCGGGGAGAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAATCAGGAAGGTCTGTATaGCAAGAGGCAATTCAGACT +
Preference number: 4 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKSGRSV*QEAIQT
Trigger: AGTCTGAATTGCCTCTTGTCATACAGACCTTCCTGA...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGTCAGGAAGGTCTGTATaGCAAGAGGCAATTCAGACT +
Preference number: 4 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWSGRSV*QEAIQT
Trigger: AGTCTGAATTGCCTCTTGTCATACAGACCTTCCTGA...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp AGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTGGTGTATGCTGTCTGTaGGTTGAGGGTGAAGTAGCT +
Preference number: 4 (lower is better)
Translates to: SPAGVVHGPWSWLFNKNLGVCCL*VEGEVA
Trigger: AGCTACTTCACCCTCAACTCACAGACAGCATACACC...AAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCCTGAACTCCTGGTTCTaGAACAGCATCTGCTGGATA +
Preference number: 4 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPLNSWF*NSICWI
Trigger: TATCCAGCAGATGCTGTTTCAGAACCAGGAGTTCAG...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp GAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTCAGATGTGGCACCAATaGTCCCAAATATGCCCAAGA +
Preference number: 4 (lower is better)
Translates to: EPSRGGPWALVLALQQKPQMWHQ*SQICPR
Trigger: TCTTGGGCATATTTGGGATCATTGGTGCCACATCTG...AGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp TCCTGGCTCTTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGCCCCTCCAAGTGTTTaGCATTGGGCACCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: SWLFNKNLPTERIWVEPEAPPSV*HWAPAP
Trigger: TGGAGCTGGTGCCCAATGGCAAACACTTGGAGGGGC...CTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CCAAATATGGGATGGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGGCTCGTAGGCACGGATaGCCACAATCCCCGAAGACT +
Preference number: 4 (lower is better)
Translates to: PNMGWDRVPYGGEGRRQEARRHG*PQSPKT
Trigger: AGTCTTCGGGGATTGTGGGCATCCGTGCCTACGAGC...CTCTTGTCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AACAGCATCTGCTGGATAGCACGTCGTACCGGGAACAGAACAATCGGAACTGTAGTGTCAGGCTCGCCCTaGAGCTGTGCCTTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: NSICWIARRTGNRTIGTVVSGSP*SCAFSS
Trigger: AGAGGAGAAGGCACAGCTGCAGGGCGAGCCTGACAC...TACAGTTCCGATTGTTCTGTTCCCGGTACGACGTGCTATCCAGCAGATGCTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR GCA 90 bp CAGGCCAGTGGCAATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCTGAAAGACAGGTTGGAGATGTaGTGCATCTTCCTCTTGGAG +
Preference number: 4 (lower is better)
Translates to: QASGNEHVPQPAELLVLKDRLEM*CIFLLE
Trigger: CTCCAAGAGGAAGATGCAGCACATCTCCAACCTGTC...TTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCACTGGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR GCA 90 bp TCGTACCGGGAACAGAACAATCGGAACTGTAAGTGTGACCGCTATCAGCACGGCCAAACGGGTCCACCTTaGTGTAGGTGTGCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: SYREQNNRNCKCDRYQHGQTGPP*CRCAAA
Trigger: AGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTG...GCCGTGCTGATAGCGGTCACACTTACAGTTCCGATTGTTCTGTTCCCGGTACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS-3UTR GCA 90 bp TCCTGGCTCTTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGTGGCAATGAGCACGTaGCGCAACCAGCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: SWLFNKNLPTERIWVEPEVAMST*RNQLNS
Trigger: GGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCAC...CTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CCAAATATGGGATGGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGGTGGCAATGAGCACGTaGCGCAACCAGCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: PNMGWDRVPYGGEGRRQEVAMST*RNQLNS
Trigger: GGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCAC...CTCTTGTCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGTTTAGGGGTGGATCTTaGAGGCTCCTTGTCAGTGGG +
Preference number: 4 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGFRGGS*RLLVSG
Trigger: CCCACTGACAAGGAGCCTGCAAGATCCACCCCTAAA...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp GAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTCAGGTTGTGTGCCAATaGGCAAGGAACTTGGAACTT +
Preference number: 4 (lower is better)
Translates to: EPSRGGPWALVLALQQKPQVVCQ*ARNLEL
Trigger: AAGTTCCAAGTTCCTTGCCCATTGGCACACAACCTG...AGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CTGGATAGCACGTCGTACCGGGAACAGAACAATCGGAACTGTAAGTGTGACCGCGAGGGTGAAGTAGCTTaGGGTACAGAAGGCCTCAGC +
Preference number: 4 (lower is better)
Translates to: LDSTSYREQNNRNCKCDREGEVA*GTEGLS
Trigger: GCTGAGGCCTTCTGTACCCCAAGCTACTTCACCCTC...GCGGTCACACTTACAGTTCCGATTGTTCTGTTCCCGGTACGACGTGCTATCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR CCA 90 bp CCAAATATGGGATGGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGTGGTTTCCTCCATGCTaGCTGGTCCCAGAGACCCAG +
Preference number: 4 (lower is better)
Translates to: PNMGWDRVPYGGEGRRQEWFPPC*LVPETQ
Trigger: CTGGGTCTCTGGGACCAGCCAGCATGGAGGAAACCA...CTCTTGTCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
3UTR CAA 72 bp AGAAGACAAGAGTACCCAAGATTTGGGGCCCAAGTGTaGGAAACGGGGCTGGAGATCAGGGATGAGCCCTTG +
Preference number: 4 (lower is better)
Translates to: RRQEYPRFGAQV*ETGLEIRDEPL
Trigger: CAAGGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTTGTCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CCAAATATGGGATGGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGCGAAGGCGAAAGCCATaGTGGGGATGGTGTATGCTG +
Preference number: 4 (lower is better)
Translates to: PNMGWDRVPYGGEGRRQERRRKP*WGWCML
Trigger: CAGCATACACCATCCCCATCATGGCTTTCGCCTTCG...CTCTTGTCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CTGAAACAGCATCTGCTGGATAGCACGTCGTACCGGGAACAGAACAATCGGAACCGAAGGCGAAAGCCATaGTGGGGATGGTGTATGCTG +
Preference number: 4 (lower is better)
Translates to: LKQHLLDSTSYREQNNRNRRRKP*WGWCML
Trigger: CAGCATACACCATCCCCATCATGGCTTTCGCCTTCG...GTTCCGATTGTTCTGTTCCCGGTACGACGTGCTATCCAGCAGATGCTGTTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR TCA 90 bp AGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACAGCCCCACCCTGTTCCCTGAACTCCTGGTTCTaGAACAGCATCTGCTGGATA +
Preference number: 4 (lower is better)
Translates to: RRMEGFMGSKAMTAPPCSLNSWF*NSICWI
Trigger: TATCCAGCAGATGCTGTTTCAGAACCAGGAGTTCAG...GGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp TCCTGGCTCTTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGTTCCTCCATGCTGGCTaGTCCCAGAGACCCAGTCAA +
Preference number: 4 (lower is better)
Translates to: SWLFNKNLPTERIWVEPEFLHAG*SQRPSQ
Trigger: TTGACTGGGTCTCTGGGACCAGCCAGCATGGAGGAA...CTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CTCCTGGTTCTGAAACAGCATCTGCTGGATAGCACGTCGTACCGGGAACAGAACGGTGTATGCTGTCTGTaGGTTGAGGGTGAAGTAGCT +
Preference number: 4 (lower is better)
Translates to: LLVLKQHLLDSTSYREQNGVCCL*VEGEVA
Trigger: AGCTACTTCACCCTCAACTCACAGACAGCATACACC...GTTCTGTTCCCGGTACGACGTGCTATCCAGCAGATGCTGTTTCAGAACCAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR TCA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGCTGAACTCCTGGTTCTaGAACAGCATCTGCTGGATA +
Preference number: 4 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGLNSWF*NSICWI
Trigger: TATCCAGCAGATGCTGTTTCAGAACCAGGAGTTCAG...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CCAAATATGGGATGGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGAGGTTGGAGATGTGCTaGATCTTCCTCTTGGAGGGG +
Preference number: 4 (lower is better)
Translates to: PNMGWDRVPYGGEGRRQERLEMC*IFLLEG
Trigger: CCCCTCCAAGAGGAAGATGCAGCACATCTCCAACCT...CTCTTGTCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AGCACGTCGTACCGGGAACAGAACAATCGGAACTGTAAGTGTGACCGCTATCAGAGGTTGGAGATGTGCTaGATCTTCCTCTTGGAGGGG +
Preference number: 4 (lower is better)
Translates to: STSYREQNNRNCKCDRYQRLEMC*IFLLEG
Trigger: CCCCTCCAAGAGGAAGATGCAGCACATCTCCAACCT...CTGATAGCGGTCACACTTACAGTTCCGATTGTTCTGTTCCCGGTACGACGTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR GCA 90 bp TGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTCCCCGGTCTCTCTCGACAGGTTGGAGATGTaGTGCATCTTCCTCTTGGAG +
Preference number: 4 (lower is better)
Translates to: WVEPEAIVFTESFSPVSLDRLEM*CIFLLE
Trigger: CTCCAAGAGGAAGATGCAGCACATCTCCAACCTGTC...GAGAGAGACCGGGGAGAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp TTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTAGTGGCAATGAGCACGTaGCGCAACCAGCTGAACTCC +
Preference number: 4 (lower is better)
Translates to: FNKNLPTERIWVEPEAIVVAMST*RNQLNS
Trigger: GGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCAC...TACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CCAAATATGGGATGGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGCCAAGTGTTTGCCATTaGGCACCAGCTCCACCATCT +
Preference number: 4 (lower is better)
Translates to: PNMGWDRVPYGGEGRRQEPSVCH*APAPPS
Trigger: AGATGGTGGAGCTGGTGCCCAATGGCAAACACTTGG...CTCTTGTCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CCAAATATGGGATGGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGGTGTCTTCAGTCCTCTaGGTGTCTGTTGTAGGCACG +
Preference number: 4 (lower is better)
Translates to: PNMGWDRVPYGGEGRRQEVSSVL*VSVVGT
Trigger: CGTGCCTACAACAGACACCCAGAGGACTGAAGACAC...CTCTTGTCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCGAGGGTGAAGTAGCTTaGGGTACAGAAGGCCTCAGC +
Preference number: 4 (lower is better)
Translates to: PTERIWVEPEAIVFTESFEGEVA*GTEGLS
Trigger: GCTGAGGCCTTCTGTACCCCAAGCTACTTCACCCTC...GAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCATGGCTCCAATGTTCTaGAGCGTAATGGCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: PTERIWVEPEAIVFTESFMAPMF*SVMARA
Trigger: AGCCCTGGCCATTACGCTTCAGAACATTGGAGCCAT...GAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAACTTCTTATAGATGACTaGGATCAAGAAGAACACCAT +
Preference number: 4 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKLLIDD*DQEEHH
Trigger: ATGGTGTTCTTCTTGATCGCAGTCATCTATAAGAAG...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCAGGTTGGAGATGTGCTaGATCTTCCTCTTGGAGGGG +
Preference number: 4 (lower is better)
Translates to: PTERIWVEPEAIVFTESFRLEMC*IFLLEG
Trigger: CCCCTCCAAGAGGAAGATGCAGCACATCTCCAACCT...GAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AGCACGTCGTACCGGGAACAGAACAATCGGAACTGTAAGTGTGACCGCTATCAGGACAGGTTGGAGATGTaGTGCATCTTCCTCTTGGAG +
Preference number: 4 (lower is better)
Translates to: STSYREQNNRNCKCDRYQDRLEM*CIFLLE
Trigger: CTCCAAGAGGAAGATGCAGCACATCTCCAACCTGTC...CTGATAGCGGTCACACTTACAGTTCCGATTGTTCTGTTCCCGGTACGACGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR GCA 90 bp CCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTTTAGGGGTGGATCTTaGAGGCTCCTTGTCAGTGGG +
Preference number: 4 (lower is better)
Translates to: PTERIWVEPEAIVFTESFFRGGS*RLLVSG
Trigger: CCCACTGACAAGGAGCCTGCAAGATCCACCCCTAAA...GAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp TTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTATTCCTCCATGCTGGCTaGTCCCAGAGACCCAGTCAA +
Preference number: 4 (lower is better)
Translates to: FNKNLPTERIWVEPEAIVFLHAG*SQRPSQ
Trigger: TTGACTGGGTCTCTGGGACCAGCCAGCATGGAGGAA...TACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp TTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTAATGGCTCCAATGTTCTaGAGCGTAATGGCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: FNKNLPTERIWVEPEAIVMAPMF*SVMARA
Trigger: AGCCCTGGCCATTACGCTTCAGAACATTGGAGCCAT...TACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATTCAGGAAGGTCTGTATaGCAAGAGGCAATTCAGACT +
Preference number: 4 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYSGRSV*QEAIQT
Trigger: AGTCTGAATTGCCTCTTGTCATACAGACCTTCCTGA...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCGGTGTATGCTGTCTGTaGGTTGAGGGTGAAGTAGCT +
Preference number: 4 (lower is better)
Translates to: PTERIWVEPEAIVFTESFGVCCL*VEGEVA
Trigger: AGCTACTTCACCCTCAACTCACAGACAGCATACACC...GAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCCTTCTTATAGATGACTaGGATCAAGAAGAACACCAT +
Preference number: 4 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPLLIDD*DQEEHH
Trigger: ATGGTGTTCTTCTTGATCGCAGTCATCTATAAGAAG...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp TTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTAAGTGTGGCTCCTTGCTaGGACTCTTCTGAAGGAAGC +
Preference number: 4 (lower is better)
Translates to: FNKNLPTERIWVEPEAIVSVAPC*DSSEGS
Trigger: GCTTCCTTCAGAAGAGTCCCAGCAAGGAGCCACACT...TACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp CCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCGAAATCGGTGAAGTGTaGCTCCTTGCTGGGACTCTT +
Preference number: 4 (lower is better)
Translates to: PTERIWVEPEAIVFTESFEIGEV*LLAGTL
Trigger: AAGAGTCCCAGCAAGGAGCCACACTTCACCGATTTC...GAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp TTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTAGGTGTATGCTGTCTGTaGGTTGAGGGTGAAGTAGCT +
Preference number: 4 (lower is better)
Translates to: FNKNLPTERIWVEPEAIVGVCCL*VEGEVA
Trigger: AGCTACTTCACCCTCAACTCACAGACAGCATACACC...TACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CCA 90 bp TATGCCCAAGATGTTGGGGGCGAAGATAACCAGCAGATTGATGCACGTAAGCAGCAGGTTGTGTGCCAATaGGCAAGGAACTTGGAACTT +
Preference number: 4 (lower is better)
Translates to: YAQDVGGEDNQQIDARKQQVVCQ*ARNLEL
Trigger: AAGTTCCAAGTTCCTTGCCCATTGGCACACAACCTG...CTGCTTACGTGCATCAATCTGCTGGTTATCTTCGCCCCCAACATCTTGGGCATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS-3UTR GCA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGCTTCTTATAGATGACTaGGATCAAGAAGAACACCAT +
Preference number: 4 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGLLIDD*DQEEHH
Trigger: ATGGTGTTCTTCTTGATCGCAGTCATCTATAAGAAG...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR GCA 90 bp AATGATCCCAAATATGCCCAAGATGTTGGGGGCGAAGATAACCAGCAGATTGATAGGTTGGAGATGTGCTaGATCTTCCTCTTGGAGGGG +
Preference number: 4 (lower is better)
Translates to: NDPKYAQDVGGEDNQQIDRLEMC*IFLLEG
Trigger: CCCCTCCAAGAGGAAGATGCAGCACATCTCCAACCT...ATCAATCTGCTGGTTATCTTCGCCCCCAACATCTTGGGCATATTTGGGATCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS-3UTR CCA 90 bp CCTACCCCATTTTCCAGAACTGTGGAGACTAAGAATATAGAACACAATCGGTCTTTCCTCCATGCTGGCTaGTCCCAGAGACCCAGTCAA +
Preference number: 4 (lower is better)
Translates to: PTPFSRTVETKNIEHNRSFLHAG*SQRPSQ
Trigger: TTGACTGGGTCTCTGGGACCAGCCAGCATGGAGGAA...AGACCGATTGTGTTCTATATTCTTAGTCTCCACAGTTCTGGAAAATGGGGTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
CDS-3UTR GCA 90 bp AATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCTGAAACAGCATCTGCTGCTTCTTATAGATGACTaGGATCAAGAAGAACACCAT +
Preference number: 4 (lower is better)
Translates to: NEHVPQPAELLVLKQHLLLLIDD*DQEEHH
Trigger: ATGGTGTTCTTCTTGATCGCAGTCATCTATAAGAAG...CAGCAGATGCTGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS-3UTR GCA 90 bp CCTACCCCATTTTCCAGAACTGTGGAGACTAAGAATATAGAACACAATCGGTCTTTTAGGGGTGGATCTTaGAGGCTCCTTGTCAGTGGG +
Preference number: 4 (lower is better)
Translates to: PTPFSRTVETKNIEHNRSFRGGS*RLLVSG
Trigger: CCCACTGACAAGGAGCCTGCAAGATCCACCCCTAAA...AGACCGATTGTGTTCTATATTCTTAGTCTCCACAGTTCTGGAAAATGGGGTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
CDS-3UTR GCA 90 bp TCCTGGCTCTTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGCTTCTTATAGATGACTaGGATCAAGAAGAACACCAT +
Preference number: 4 (lower is better)
Translates to: SWLFNKNLPTERIWVEPELLIDD*DQEEHH
Trigger: ATGGTGTTCTTCTTGATCGCAGTCATCTATAAGAAG...CTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR TCA 90 bp CCTACCCCATTTTCCAGAACTGTGGAGACTAAGAATATAGAACACAATCGGTCTCTGAACTCCTGGTTCTaGAACAGCATCTGCTGGATA +
Preference number: 4 (lower is better)
Translates to: PTPFSRTVETKNIEHNRSLNSWF*NSICWI
Trigger: TATCCAGCAGATGCTGTTTCAGAACCAGGAGTTCAG...AGACCGATTGTGTTCTATATTCTTAGTCTCCACAGTTCTGGAAAATGGGGTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
CDS GCA 90 bp GCTGGACATGGCTCCAATGTTCTGAAGCGTAATGGCCAGGGCTGCTaGCAGCTTCCCCGGGGTCCCAAAGGCACGGTAGCCCAACTGCTC +
Preference number: 5 (lower is better)
Translates to: AGHGSNVLKRNGQGC*QLPRGPKGTVAQLL
Trigger: GAGCAGTTGGGCTACCGTGCCTTTGGGACCCCGGGGAAGCTGGCAGCAGCCCTGGCCATTACGCTTCAGAACATTGGAGCCATGTCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000193932.6
CDS GCA 90 bp GTAGCTGGACATGGCTCCAATGTTCTGAAGCGTAATGGCCAGGGCTaGTGCCAGCTTCCCCGGGGTCCCAAAGGCACGGTAGCCCAACTG +
Preference number: 5 (lower is better)
Translates to: VAGHGSNVLKRNGQG*CQLPRGPKGTVAQL
Trigger: CAGTTGGGCTACCGTGCCTTTGGGACCCCGGGGAAGCTGGCAGCAGCCCTGGCCATTACGCTTCAGAACATTGGAGCCATGTCCAGCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGAGCCCCTCCAAGTGTTaGCCATTGGGCACCAGCTCC +
Preference number: 5 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWSPSKC*PLGTSS
Trigger: GGAGCTGGTGCCCAATGGCAAACACTTGGAGGGGCT...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAACCATGTGGCTGAAGTaGCCGGTGGCATTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKTMWLK*PVALAR
Trigger: CCTGGCCAATGCCACCGGCAACTTCAGCCACATGGT...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS GCA 90 bp CGGCCACTCGCACACACAAGATCAGCACATCAAACGGGTCCACCTTaGTGTAGGTGTGCAGCAGCTCCGACTCCACCCCGTCGTAGAAGG +
Preference number: 5 (lower is better)
Translates to: RPLAHTRSAHQTGPP*CRCAAAPTPPRRRR
Trigger: CCTTCTACGACGGGGTGGAGTCGGAGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTGATGTGCTGATCTTGTGTGTGCGAGTGGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAGCCCTCTCCACAGTGTaGGGTGTCTTCAGTCCTCTG +
Preference number: 5 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKALSTV*GVFSPL
Trigger: CAGAGGACTGAAGACACCCAACACTGTGGAGAGGGC...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp GAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTACCATGTGGCTGAAGTaGCCGGTGGCATTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: EPSRGGPWALVLALQQKPTMWLK*PVALAR
Trigger: CCTGGCCAATGCCACCGGCAACTTCAGCCACATGGT...AGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CGTAAGCAGGCCAGTGGCAATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTACCATGTGGCTGAAGTaGCCGGTGGCATTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: RKQASGNEHVPQPAELLVTMWLK*PVALAR
Trigger: CCTGGCCAATGCCACCGGCAACTTCAGCCACATGGT...AACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCACTGGCCTGCTTACG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR CAA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCAAGTTGCCGGTGGCATaGGCCAGGTTGTGTGCCAAT +
Preference number: 5 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLKLPVA*ARLCAN
Trigger: ATTGGCACACAACCTGGCCAATGCCACCGGCAACTT...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAAAAGTTGCCGGTGGCATaGGCCAGGTTGTGTGCCAAT +
Preference number: 5 (lower is better)
Translates to: KSWPRREVWESQPPLNCEKLPVA*ARLCAN
Trigger: ATTGGCACACAACCTGGCCAATGCCACCGGCAACTT...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CAGGCCAGTGGCAATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCTGAAAACCATGTGGCTGAAGTaGCCGGTGGCATTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: QASGNEHVPQPAELLVLKTMWLK*PVALAR
Trigger: CCTGGCCAATGCCACCGGCAACTTCAGCCACATGGT...TTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCACTGGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR CAA 90 bp AGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACAGCCCCACCCTGTTCCACCATGTGGCTGAAGTaGCCGGTGGCATTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: RRMEGFMGSKAMTAPPCSTMWLK*PVALAR
Trigger: CCTGGCCAATGCCACCGGCAACTTCAGCCACATGGT...GGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp TGCCTGTGTGACCTCAGGAGGTGGCCGCTAGGCCTCAGTGTGCACAGCTGCTGGACAGCAATGGACAGGTaGGAGATGTGCTGCATCTTC +
Preference number: 5 (lower is better)
Translates to: CLCDLRRWPLGLSVHSCWTAMDR*EMCCIF
Trigger: GAAGATGCAGCACATCTCCAACCTGTCCATTGCTGT...CCAGCAGCTGTGCACACTGAGGCCTAGCGGCCACCTCCTGAGGTCACACAGGCA
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCGATCTTGCAGGCTCCTaGTCAGTGGGCATGATTCGG +
Preference number: 5 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLDLAGS*SVGMIR
Trigger: CCGAATCATGCCCACTGACAAGGAGCCTGCAAGATC...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp AAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCCCTGAACTGTGAAGATCTTGCAGGCTCCTaGTCAGTGGGCATGATTCGG +
Preference number: 5 (lower is better)
Translates to: KSWPRREVWESQPPLNCEDLAGS*SVGMIR
Trigger: CCGAATCATGCCCACTGACAAGGAGCCTGCAAGATC...TTCACAGTTCAGGGGAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CTCTGGAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAGATCTTGCAGGCTCCTaGTCAGTGGGCATGATTCGG +
Preference number: 5 (lower is better)
Translates to: LWSPAGVVHGPWSWLFNKDLAGS*SVGMIR
Trigger: CCGAATCATGCCCACTGACAAGGAGCCTGCAAGATC...TTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTCCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp GAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTCCAAGTGTTTGCCATaGGGCACCAGCTCCACCATC +
Preference number: 5 (lower is better)
Translates to: EPSRGGPWALVLALQQKPSKCLP*GTSSTI
Trigger: GATGGTGGAGCTGGTGCCCAATGGCAAACACTTGGA...AGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp AGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACAGCCCCACCCTGTTCCGCCCTCTCCACAGTGTaGGGTGTCTTCAGTCCTCTG +
Preference number: 5 (lower is better)
Translates to: RRMEGFMGSKAMTAPPCSALSTV*GVFSPL
Trigger: CAGAGGACTGAAGACACCCAACACTGTGGAGAGGGC...GGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCTCTTGGAGGGGTCCTaGAGCTCTGTATATATGGGC +
Preference number: 5 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLLLEGS*SSVYMG
Trigger: GCCCATATATACAGAGCTCAAGGACCCCTCCAAGAG...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp ATCAAACGGGTCCACCTTGCTGTAGGTGTGCAGCAGCTCCGACTCCACCCCGTCCTCTTGGAGGGGTCCTaGAGCTCTGTATATATGGGC +
Preference number: 5 (lower is better)
Translates to: IKRVHLAVGVQQLRLHPVLLEGS*SSVYMG
Trigger: GCCCATATATACAGAGCTCAAGGACCCCTCCAAGAG...GACGGGGTGGAGTCGGAGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192211.2
CDS-3UTR CAA 90 bp GAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTGCTGCATCTTCCTCTaGGAGGGGTCCTTGAGCTCT +
Preference number: 5 (lower is better)
Translates to: EPSRGGPWALVLALQQKPCCIFL*EGSLSS
Trigger: AGAGCTCAAGGACCCCTCCAAGAGGAAGATGCAGCA...AGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCTGCTGCATCTTCCTCTaGGAGGGGTCCTTGAGCTCT +
Preference number: 5 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPCCIFL*EGSLSS
Trigger: AGAGCTCAAGGACCCCTCCAAGAGGAAGATGCAGCA...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp AGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTTCCAAGTGTTTGCCATaGGGCACCAGCTCCACCATC +
Preference number: 5 (lower is better)
Translates to: SPAGVVHGPWSWLFNKNLSKCLP*GTSSTI
Trigger: GATGGTGGAGCTGGTGCCCAATGGCAAACACTTGGA...AAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCACAATCCCCGAAGACTaGAGGAGCAGGTGGATGGAA +
Preference number: 5 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPTIPED*RSRWME
Trigger: TTCCATCCACCTGCTCCTCAAGTCTTCGGGGATTGT...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp TGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTCCCCGGTCTCTCTCACCATGTGGCTGAAGTaGCCGGTGGCATTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: WVEPEAIVFTESFSPVSLTMWLK*PVALAR
Trigger: CCTGGCCAATGCCACCGGCAACTTCAGCCACATGGT...GAGAGAGACCGGGGAGAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCACAGCAATGGACAGGTaGGAGATGTGCTGCATCTTC +
Preference number: 5 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLTAMDR*EMCCIF
Trigger: GAAGATGCAGCACATCTCCAACCTGTCCATTGCTGT...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS TCA 90 bp TTCCCCTCGAAATCGGTGAAGTGTGGCTCCTTGCTGGGACTCTTCTaGAGGAAGCCCTTGCCCTCTCCACAGTGTTGGGTGTCTTCAGTC +
Preference number: 5 (lower is better)
Translates to: FPSKSVKCGSLLGLF*RKPLPSPQCWVSSV
Trigger: GACTGAAGACACCCAACACTGTGGAGAGGGCAAGGGCTTCCTTCAGAAGAGTCCCAGCAAGGAGCCACACTTCACCGATTTCGAGGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000192990.6
ENSMUST00000193932.6
ENSMUST00000195843.2
CDS-3UTR CAA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGTCCAAGTGTTTGCCATaGGGCACCAGCTCCACCATC +
Preference number: 5 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGSKCLP*GTSSTI
Trigger: GATGGTGGAGCTGGTGCCCAATGGCAAACACTTGGA...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATGCCCTCTCCACAGTGTaGGGTGTCTTCAGTCCTCTG +
Preference number: 5 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYALSTV*GVFSPL
Trigger: CAGAGGACTGAAGACACCCAACACTGTGGAGAGGGC...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp AGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTTACAATCCCCGAAGACTaGAGGAGCAGGTGGATGGAA +
Preference number: 5 (lower is better)
Translates to: SPAGVVHGPWSWLFNKNLTIPED*RSRWME
Trigger: TTCCATCCACCTGCTCCTCAAGTCTTCGGGGATTGT...AAGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp AGGAGGATGGAGGGTTTCATGGGATCTAAGGCGATGACAGCCCCACCCTGTTCCCTCTTGGAGGGGTCCTaGAGCTCTGTATATATGGGC +
Preference number: 5 (lower is better)
Translates to: RRMEGFMGSKAMTAPPCSLLEGS*SSVYMG
Trigger: GCCCATATATACAGAGCTCAAGGACCCCTCCAAGAG...GGAACAGGGTGGGGCTGTCATCGCCTTAGATCCCATGAAACCCTCCATCCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCTGTGCCAGCCTGGCTTCTAGGGTCTTTGACTCCCAAGGGCAGGCTACTCTGGAAGATAACCAGCAGATaGATGCACGTAAGCAGGCCA +
Preference number: 5 (lower is better)
Translates to: PVPAWLLGSLTPKGRLLWKITSR*MHVSRP
Trigger: TGGCCTGCTTACGTGCATCAATCTGCTGGTTATCTT...CCAGAGTAGCCTGCCCTTGGGAGTCAAAGACCCTAGAAGCCAGGCTGGCACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCAATATGCCCAAGATGTaGGGGGCGAAGATAACCAGC +
Preference number: 5 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPNMPKM*GAKITS
Trigger: GCTGGTTATCTTCGCCCCCAACATCTTGGGCATATT...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp GAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTAATATGCCCAAGATGTaGGGGGCGAAGATAACCAGC +
Preference number: 5 (lower is better)
Translates to: EPSRGGPWALVLALQQKPNMPKM*GAKITS
Trigger: GCTGGTTATCTTCGCCCCCAACATCTTGGGCATATT...AGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp AGCACGTCGTACCGGGAACAGAACAATCGGAACTGTAAGTGTGACCGCTATCAGTGCTGCATCTTCCTCTaGGAGGGGCTCAGGGTGGCA +
Preference number: 5 (lower is better)
Translates to: STSYREQNNRNCKCDRYQCCIFL*EGLRVA
Trigger: TGCCACCCTGAGCCCCTCCAAGAGGAAGATGCAGCA...CTGATAGCGGTCACACTTACAGTTCCGATTGTTCTGTTCCCGGTACGACGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS-3UTR CAA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATTCCAAGTGTTTGCCATaGGGCACCAGCTCCACCATC +
Preference number: 5 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYSKCLP*GTSSTI
Trigger: GATGGTGGAGCTGGTGCCCAATGGCAAACACTTGGA...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCAAATATGGGATGGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGGCCCTCTCCACAGTGTaGGGTGTCTTCAGTCCTCTG +
Preference number: 5 (lower is better)
Translates to: PNMGWDRVPYGGEGRRQEALSTV*GVFSPL
Trigger: CAGAGGACTGAAGACACCCAACACTGTGGAGAGGGC...CTCTTGTCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp TGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTCCCCGGTCTCTCTCAAGTTGCCGGTGGCATaGGCCAGGTTGTGTGCCAAT +
Preference number: 5 (lower is better)
Translates to: WVEPEAIVFTESFSPVSLKLPVA*ARLCAN
Trigger: ATTGGCACACAACCTGGCCAATGCCACCGGCAACTT...GAGAGAGACCGGGGAGAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp GAACTCCTGGTTCTGAAACAGCATCTGCTGGATAGCACGTCGTACCGGGAACAGTGCTGCATCTTCCTCTaGGAGGGGTCCTTGAGCTCT +
Preference number: 5 (lower is better)
Translates to: ELLVLKQHLLDSTSYREQCCIFL*EGSLSS
Trigger: AGAGCTCAAGGACCCCTCCAAGAGGAAGATGCAGCA...CTGTTCCCGGTACGACGTGCTATCCAGCAGATGCTGTTTCAGAACCAGGAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192211.2
CDS-3UTR CAA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATGATCTTGCAGGCTCCTaGTCAGTGGGCATGATTCGG +
Preference number: 5 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYDLAGS*SVGMIR
Trigger: CCGAATCATGCCCACTGACAAGGAGCCTGCAAGATC...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CAGCAGTGGAATGTAAGTCATGGCCCAGGCGTGAGGTGTGGGAGTCCCAGCCTCCAATGGGCAAGGAACTaGGAACTTCTTATAGATGAC +
Preference number: 5 (lower is better)
Translates to: QQWNVSHGPGVRCGSPSLQWARN*ELLIDD
Trigger: GTCATCTATAAGAAGTTCCAAGTTCCTTGCCCATTG...GAGGCTGGGACTCCCACACCTCACGCCTGGGCCATGACTTACATTCCACTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp AGCACGTCGTACCGGGAACAGAACAATCGGAACTGTAAGTGTGACCGCTATCAGAAGTTGCCGGTGGCATaGGCCAGGTTGTGTGCCAAT +
Preference number: 5 (lower is better)
Translates to: STSYREQNNRNCKCDRYQKLPVA*ARLCAN
Trigger: ATTGGCACACAACCTGGCCAATGCCACCGGCAACTT...CTGATAGCGGTCACACTTACAGTTCCGATTGTTCTGTTCCCGGTACGACGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS-3UTR CAA 90 bp CATCCTCAGCAGAACCTGCTGACCCCAAATATGGGATGGGATAGGGTCCCCTATCTCTTGGAGGGGTCCTaGAGCTCTGTATATATGGGC +
Preference number: 5 (lower is better)
Translates to: HPQQNLLTPNMGWDRVPYLLEGS*SSVYMG
Trigger: GCCCATATATACAGAGCTCAAGGACCCCTCCAAGAG...ATAGGGGACCCTATCCCATCCCATATTTGGGGTCAGCAGGTTCTGCTGAGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCAAATATGGGATGGGATAGGGTCCCCTATGGAGGAGAGGGAAGAAGACAAGAGTGCTGCATCTTCCTCTaGGAGGGGTCCTTGAGCTCT +
Preference number: 5 (lower is better)
Translates to: PNMGWDRVPYGGEGRRQECCIFL*EGSLSS
Trigger: AGAGCTCAAGGACCCCTCCAAGAGGAAGATGCAGCA...CTCTTGTCTTCTTCCCTCTCCTCCATAGGGGACCCTATCCCATCCCATATTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS GCA 90 bp CACCACCATGTGGCTGAAGTTGCCGGTGGCATTGGCCAGGTTGTGTaGCAATGGGCAAGGAACTTGGAACTTCTTATAGATGACTGCGAT +
Preference number: 5 (lower is better)
Translates to: HHHVAEVAGGIGQVV*QWARNLELLIDDCD
Trigger: ATCGCAGTCATCTATAAGAAGTTCCAAGTTCCTTGCCCATTGGCACACAACCTGGCCAATGCCACCGGCAACTTCAGCCACATGGTGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
ENSMUST00000195739.2
CDS-3UTR CAA 90 bp GAGCCCAGCAGGGGTGGTCCATGGGCCTTGGTCCTGGCTCTTCAACAAAAACCTCAATGGGCAAGGAACTaGGAACTTCTTATAGATGAC +
Preference number: 5 (lower is better)
Translates to: EPSRGGPWALVLALQQKPQWARN*ELLIDD
Trigger: GTCATCTATAAGAAGTTCCAAGTTCCTTGCCCATTG...AGGTTTTTGTTGAAGAGCCAGGACCAAGGCCCATGGACCACCCCTGCTGGGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGATGAGCCCCAATGGGCAAGGAACTaGGAACTTCTTATAGATGAC +
Preference number: 5 (lower is better)
Translates to: PRFGAQVLETGLEIRDEPQWARN*ELLIDD
Trigger: GTCATCTATAAGAAGTTCCAAGTTCCTTGCCCATTG...GGGCTCATCCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp GTAAGCAGGCCAGTGGCAATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCCAATGGGCAAGGAACTaGGAACTTCTTATAGATGAC +
Preference number: 5 (lower is better)
Translates to: VSRPVAMSTCRNQLNSWFQWARN*ELLIDD
Trigger: GTCATCTATAAGAAGTTCCAAGTTCCTTGCCCATTG...GAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATTGCCACTGGCCTGCTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS-3UTR CAA 90 bp CCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCAAGTTGCCGGTGGCATaGGCCAGGTTGTGTGCCAAT +
Preference number: 5 (lower is better)
Translates to: PTERIWVEPEAIVFTESFKLPVA*ARLCAN
Trigger: ATTGGCACACAACCTGGCCAATGCCACCGGCAACTT...GAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTGCTGCATCTTCCTCTaGGAGGGGTCCTTGAGCTCT +
Preference number: 5 (lower is better)
Translates to: PTERIWVEPEAIVFTESFCCIFL*EGSLSS
Trigger: AGAGCTCAAGGACCCCTCCAAGAGGAAGATGCAGCA...GAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp AATGAGCACGTGCCGCAACCAGCTGAACTCCTGGTTCTGAAACAGCATCTGCTGACAGCAATGGACAGGTaGGAGATGTGCTGCATCTTC +
Preference number: 5 (lower is better)
Translates to: NEHVPQPAELLVLKQHLLTAMDR*EMCCIF
Trigger: GAAGATGCAGCACATCTCCAACCTGTCCATTGCTGT...CAGCAGATGCTGTTTCAGAACCAGGAGTTCAGCTGGTTGCGGCACGTGCTCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192211.2
ENSMUST00000195739.2
CDS-3UTR CAA 90 bp AAGAGTACCCAAGATTTGGGGCCCAAGTGTTGGAAACGGGGCTGGAGATCAGGGAAGATAACCAGCAGATaGATGCACGTAAGCAGGCCA +
Preference number: 5 (lower is better)
Translates to: KSTQDLGPKCWKRGWRSGKITSR*MHVSRP
Trigger: TGGCCTGCTTACGTGCATCAATCTGCTGGTTATCTT...CCCTGATCTCCAGCCCCGTTTCCAACACTTGGGCCCCAAATCTTGGGTACTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp TGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTCCCCGGTCTCTCTCAATATGCCCAAGATGTaGGGGGCGAAGATAACCAGC +
Preference number: 5 (lower is better)
Translates to: WVEPEAIVFTESFSPVSLNMPKM*GAKITS
Trigger: GCTGGTTATCTTCGCCCCCAACATCTTGGGCATATT...GAGAGAGACCGGGGAGAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCCTCTTGGAGGGGTCCTaGAGCTCTGTATATATGGGC +
Preference number: 5 (lower is better)
Translates to: PTERIWVEPEAIVFTESFLLEGS*SSVYMG
Trigger: GCCCATATATACAGAGCTCAAGGACCCCTCCAAGAG...GAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp TGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCTCCCCGGTCTCTCTCAAGATAACCAGCAGATaGATGCACGTAAGCAGGCCA +
Preference number: 5 (lower is better)
Translates to: WVEPEAIVFTESFSPVSLKITSR*MHVSRP
Trigger: TGGCCTGCTTACGTGCATCAATCTGCTGGTTATCTT...GAGAGAGACCGGGGAGAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp TCCTGGCTCTTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGAATATGCCCAAGATGTaGGGGGCGAAGATAACCAGC +
Preference number: 5 (lower is better)
Translates to: SWLFNKNLPTERIWVEPENMPKM*GAKITS
Trigger: GCTGGTTATCTTCGCCCCCAACATCTTGGGCATATT...CTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS CCA 90 bp CATGTGGCTGAAGTTGCCGGTGGCATTGGCCAGGTTGTGTGCCAATaGGCAAGGAACTTGGAACTTCTTATAGATGACTGCGATCAAGAA +
Preference number: 5 (lower is better)
Translates to: HVAEVAGGIGQVVCQ*ARNLELLIDDCDQE
Trigger: TTCTTGATCGCAGTCATCTATAAGAAGTTCCAAGTTCCTTGCCCATTGGCACACAACCTGGCCAATGCCACCGGCAACTTCAGCCACATG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
ENSMUST00000195739.2
CDS-3UTR CAA 90 bp TTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTAACAATCCCCGAAGACTaGAGGAGCAGGTGGATGGAA +
Preference number: 5 (lower is better)
Translates to: FNKNLPTERIWVEPEAIVTIPED*RSRWME
Trigger: TTCCATCCACCTGCTCCTCAAGTCTTCGGGGATTGT...TACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCAACGGAGAGGATATGGGTGGAGCCAGAGGCCATAGTATTTACAGAGTCTTTCACAGCAATGGACAGGTaGGAGATGTGCTGCATCTTC +
Preference number: 5 (lower is better)
Translates to: PTERIWVEPEAIVFTESFTAMDR*EMCCIF
Trigger: GAAGATGCAGCACATCTCCAACCTGTCCATTGCTGT...GAAAGACTCTGTAAATACTATGGCCTCTGGCTCCACCCATATCCTCTCCGTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCCAAATATGCCCAAGATGTTGGGGGCGAAGATAACCAGCAGATTGATGCACGTACAGCAATGGACAGGTaGGAGATGTGCTGCATCTTC +
Preference number: 5 (lower is better)
Translates to: PKYAQDVGGEDNQQIDARTAMDR*EMCCIF
Trigger: GAAGATGCAGCACATCTCCAACCTGTCCATTGCTGT...ACGTGCATCAATCTGCTGGTTATCTTCGCCCCCAACATCTTGGGCATATTTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS-3UTR CAA 90 bp TCCTGGCTCTTCAACAAAAACCTTCCAACGGAGAGGATATGGGTGGAGCCAGAGCAATGGGCAAGGAACTaGGAACTTCTTATAGATGAC +
Preference number: 5 (lower is better)
Translates to: SWLFNKNLPTERIWVEPEQWARN*ELLIDD
Trigger: GTCATCTATAAGAAGTTCCAAGTTCCTTGCCCATTG...CTCTGGCTCCACCCATATCCTCTCCGTTGGAAGGTTTTTGTTGAAGAGCCAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
CDS-3UTR CAA 90 bp CCTACCCCATTTTCCAGAACTGTGGAGACTAAGAATATAGAACACAATCGGTCTACAGCAATGGACAGGTaGGAGATGTGCTGCATCTTC +
Preference number: 5 (lower is better)
Translates to: PTPFSRTVETKNIEHNRSTAMDR*EMCCIF
Trigger: GAAGATGCAGCACATCTCCAACCTGTCCATTGCTGT...AGACCGATTGTGTTCTATATTCTTAGTCTCCACAGTTCTGGAAAATGGGGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167868.8
CDS GCA 72 bp GGCTCCAATGTTCTGAAGCGTAATGGCCAGGGCTGCTaGCAGCTTCCCCGGGGTCCCAAAGGCACGGTAGCC +
Preference number: 6 (lower is better)
Translates to: GSNVLKRNGQGC*QLPRGPKGTVA
Trigger: GGCTACCGTGCCTTTGGGACCCCGGGGAAGCTGGCAGCAGCCCTGGCCATTACGCTTCAGAACATTGGAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000193932.6
CDS GCA 72 bp CATGGCTCCAATGTTCTGAAGCGTAATGGCCAGGGCTaGTGCCAGCTTCCCCGGGGTCCCAAAGGCACGGTA +
Preference number: 6 (lower is better)
Translates to: HGSNVLKRNGQG*CQLPRGPKGTV
Trigger: TACCGTGCCTTTGGGACCCCGGGGAAGCTGGCAGCAGCCCTGGCCATTACGCTTCAGAACATTGGAGCCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000193932.6
CDS CCA 72 bp CGCCCACTGGTAGAAGCCCCTCCAAGTGTTTGCCATTaGGCACCAGCTCCACCATCTCTGTCTGTCGGGGTA +
Preference number: 6 (lower is better)
Translates to: RPLVEAPPSVCH*APAPPSLSVGV
Trigger: TACCCCGACAGACAGAGATGGTGGAGCTGGTGCCCAATGGCAAACACTTGGAGGGGCTTCTACCAGTGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000192990.6
ENSMUST00000193932.6
ENSMUST00000195843.2
CDS CAA 72 bp TGTGCCTTCTCCTCTGCCACCACCATGTGGCTGAAGTaGCCGGTGGCATTGGCCAGGTTGTGTGCCAATGGG +
Preference number: 6 (lower is better)
Translates to: CAFSSATTMWLK*PVALARLCANG
Trigger: CCCATTGGCACACAACCTGGCCAATGCCACCGGCAACTTCAGCCACATGGTGGTGGCAGAGGAGAAGGCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
ENSMUST00000195739.2
CDS CAA 90 bp GTGTCTGTTGTAGGCACGCCCACTGGTAGAAGCCCCTCCAAGTGTTaGCCATTGGGCACCAGCTCCACCATCTCTGTCTGTCGGGGTATC +
Preference number: 6 (lower is better)
Translates to: VSVVGTPTGRSPSKC*PLGTSSTISVCRGI
Trigger: GATACCCCGACAGACAGAGATGGTGGAGCTGGTGCCCAATGGCAAACACTTGGAGGGGCTTCTACCAGTGGGCGTGCCTACAACAGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000192990.6
ENSMUST00000193932.6
ENSMUST00000195843.2
CDS CAA 90 bp CTTGCTGGGACTCTTCTGAAGGAAGCCCTTGCCCTCTCCACAGTGTaGGGTGTCTTCAGTCCTCTGGGTGTCTGTTGTAGGCACGCCCAC +
Preference number: 6 (lower is better)
Translates to: LAGTLLKEALALSTV*GVFSPLGVCCRHAH
Trigger: GTGGGCGTGCCTACAACAGACACCCAGAGGACTGAAGACACCCAACACTGTGGAGAGGGCAAGGGCTTCCTTCAGAAGAGTCCCAGCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000192990.6
ENSMUST00000193932.6
ENSMUST00000195843.2
CDS CAA 72 bp GTAGGCACGCCCACTGGTAGAAGCCCCTCCAAGTGTTaGCCATTGGGCACCAGCTCCACCATCTCTGTCTGT +
Preference number: 6 (lower is better)
Translates to: VGTPTGRSPSKC*PLGTSSTISVC
Trigger: ACAGACAGAGATGGTGGAGCTGGTGCCCAATGGCAAACACTTGGAGGGGCTTCTACCAGTGGGCGTGCCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000192990.6
ENSMUST00000193932.6
ENSMUST00000195843.2
CDS CCA 72 bp TTGCCCTCTCCACAGTGTTGGGTGTCTTCAGTCCTCTaGGTGTCTGTTGTAGGCACGCCCACTGGTAGAAGC +
Preference number: 6 (lower is better)
Translates to: LPSPQCWVSSVL*VSVVGTPTGRS
Trigger: GCTTCTACCAGTGGGCGTGCCTACAACAGACACCCAGAGGACTGAAGACACCCAACACTGTGGAGAGGGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000192990.6
ENSMUST00000193932.6
ENSMUST00000195843.2
CDS CAA 90 bp GCCTTCTCCTCTGCCACCACCATGTGGCTGAAGTTGCCGGTGGCATaGGCCAGGTTGTGTGCCAATGGGCAAGGAACTTGGAACTTCTTA +
Preference number: 6 (lower is better)
Translates to: AFSSATTMWLKLPVA*ARLCANGQGTWNFL
Trigger: TAAGAAGTTCCAAGTTCCTTGCCCATTGGCACACAACCTGGCCAATGCCACCGGCAACTTCAGCCACATGGTGGTGGCAGAGGAGAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
ENSMUST00000195739.2
CDS CAA 90 bp AGGGCGGCCAGGAAGTACATGACATACATGACAGCAATGGACAGGTaGGAGATGTGCTGCATCTTCCTCTTGGAGGGGCTCAGGGTGGCA +
Preference number: 6 (lower is better)
Translates to: RAARKYMTYMTAMDR*EMCCIFLLEGLRVA
Trigger: TGCCACCCTGAGCCCCTCCAAGAGGAAGATGCAGCACATCTCCAACCTGTCCATTGCTGTCATGTATGTCATGTACTTCCTGGCCGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS TCA 72 bp AAATCGGTGAAGTGTGGCTCCTTGCTGGGACTCTTCTaGAGGAAGCCCTTGCCCTCTCCACAGTGTTGGGTG +
Preference number: 6 (lower is better)
Translates to: KSVKCGSLLGLF*RKPLPSPQCWV
Trigger: CACCCAACACTGTGGAGAGGGCAAGGGCTTCCTTCAGAAGAGTCCCAGCAAGGAGCCACACTTCACCGATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000192990.6
ENSMUST00000193932.6
ENSMUST00000195843.2
CDS CAA 72 bp ACTCTTCTGAAGGAAGCCCTTGCCCTCTCCACAGTGTaGGGTGTCTTCAGTCCTCTGGGTGTCTGTTGTAGG +
Preference number: 6 (lower is better)
Translates to: TLLKEALALSTV*GVFSPLGVCCR
Trigger: CCTACAACAGACACCCAGAGGACTGAAGACACCCAACACTGTGGAGAGGGCAAGGGCTTCCTTCAGAAGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192323.6
ENSMUST00000192990.6
ENSMUST00000193932.6
ENSMUST00000195843.2
CDS CAA 90 bp AGGGCGGCCAGGAAGTACATGACATACATGACAGCAATGGACAGGTaGGAGATGTGCTGCATCTTCCTCTTGGAGGGGTCCTTGAGCTCT +
Preference number: 6 (lower is better)
Translates to: RAARKYMTYMTAMDR*EMCCIFLLEGSLSS
Trigger: AGAGCTCAAGGACCCCTCCAAGAGGAAGATGCAGCACATCTCCAACCTGTCCATTGCTGTCATGTATGTCATGTACTTCCTGGCCGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192211.2
ENSMUST00000193932.6
CDS CAA 72 bp ACCATGTGGCTGAAGTTGCCGGTGGCATTGGCCAGGTaGTGTGCCAATGGGCAAGGAACTTGGAACTTCTTA +
Preference number: 6 (lower is better)
Translates to: TMWLKLPVALAR*CANGQGTWNFL
Trigger: TAAGAAGTTCCAAGTTCCTTGCCCATTGGCACACAACCTGGCCAATGCCACCGGCAACTTCAGCCACATGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
ENSMUST00000195739.2
CDS CCA 72 bp GAAGTTGCCGGTGGCATTGGCCAGGTTGTGTGCCAATaGGCAAGGAACTTGGAACTTCTTATAGATGACTGC +
Preference number: 6 (lower is better)
Translates to: EVAGGIGQVVCQ*ARNLELLIDDC
Trigger: GCAGTCATCTATAAGAAGTTCCAAGTTCCTTGCCCATTGGCACACAACCTGGCCAATGCCACCGGCAACTTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
ENSMUST00000195739.2
CDS CAA 72 bp AGGAAGTACATGACATACATGACAGCAATGGACAGGTaGGAGATGTGCTGCATCTTCCTCTTGGAGGGGTCC +
Preference number: 6 (lower is better)
Translates to: RKYMTYMTAMDR*EMCCIFLLEGS
Trigger: GGACCCCTCCAAGAGGAAGATGCAGCACATCTCCAACCTGTCCATTGCTGTCATGTATGTCATGTACTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000192211.2
ENSMUST00000193932.6
CDS CAA 72 bp AGGAAGTACATGACATACATGACAGCAATGGACAGGTaGGAGATGTGCTGCATCTTCCTCTTGGAGGGGCTC +
Preference number: 6 (lower is better)
Translates to: RKYMTYMTAMDR*EMCCIFLLEGL
Trigger: GAGCCCCTCCAAGAGGAAGATGCAGCACATCTCCAACCTGTCCATTGCTGTCATGTATGTCATGTACTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195739.2
CDS CAA 72 bp GGCATTGGCCAGGTTGTGTGCCAATGGGCAAGGAACTaGGAACTTCTTATAGATGACTGCGATCAAGAAGAA +
Preference number: 6 (lower is better)
Translates to: GIGQVVCQWARN*ELLIDDCDQEE
Trigger: TTCTTCTTGATCGCAGTCATCTATAAGAAGTTCCAAGTTCCTTGCCCATTGGCACACAACCTGGCCAATGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000010208.14
ENSMUST00000167868.8
ENSMUST00000177567.8
ENSMUST00000193932.6
ENSMUST00000195739.2