RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC38A11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061171

Ensembl transcript IDs: ENSMUST00000112420.8, ENSMUST00000124918.8, ENSMUST00000127623.8, ENSMUST00000152324.8, ENSMUST00000155962.3

Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTaGCAAAGAGACAACCACAGGTGCATGTTGTTTAAAGCAGCCAGC +
Preference number: 1 (lower is better)
Translates to: RLRTSKSPCSSVLIL*QRDNHRCMLFKAAS
Trigger: GCTGGCTGCTTTAAACAACATGCACCTGTGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR TCA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCACCGTGGGTGCAGTCCTaGGGATTTGTGATAGCCATG +
Preference number: 4 (lower is better)
Translates to: DKQVSMLISANLVTKRQPPWVQS*GFVIAM
Trigger: CATGGCTATCACAAATCCTCAGGACTGCACCCACGG...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR TCA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGCCGTGGGTGCAGTCCTaGGGATTTGTGATAGCCATG +
Preference number: 4 (lower is better)
Translates to: KTKDKQVSMLISANLVTKPWVQS*GFVIAM
Trigger: CATGGCTATCACAAATCCTCAGGACTGCACCCACGG...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR GCA 90 bp AAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAAGAGTCTGTCTCTCTCTaGAGAGGACCGCTCAGCTGT +
Preference number: 4 (lower is better)
Translates to: KDKQVSMLISANLVTKRQESVSL*RGPLSC
Trigger: ACAGCTGAGCGGTCCTCTGCAGAGAGAGACAGACTC...TTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112420.8
CDS-3UTR TCA 90 bp AAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCCCGACGGGAAACATaGCACAGGCCATTATCTTAT +
Preference number: 4 (lower is better)
Translates to: KDKQVSMLISANLVTKRQPRRET*HRPLSY
Trigger: ATAAGATAATGGCCTGTGTCATGTTTCCCGTCGGGG...TTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR TCA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCAACCAGGAGGTGTTTGTaGAGGAGACATTTTCAGGAA +
Preference number: 4 (lower is better)
Translates to: DKQVSMLISANLVTKRQPTRRCL*RRHFQE
Trigger: TTCCTGAAAATGTCTCCTTCACAAACACCTCCTGGT...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR GCA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGGATGGCATTGGGCTTTaGAAACACCCAAGCATTGTC +
Preference number: 4 (lower is better)
Translates to: KTKDKQVSMLISANLVTKDGIGL*KHPSIV
Trigger: GACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATC...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR GCA 90 bp AAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAAGATGGCATTGGGCTTTaGAAACACCCAAGCATTGTC +
Preference number: 4 (lower is better)
Translates to: KDKQVSMLISANLVTKRQDGIGL*KHPSIV
Trigger: GACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATC...TTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR GCA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGGAAGTACCCGCACGTTaGAAAGAGCACACAGATGAA +
Preference number: 4 (lower is better)
Translates to: KTKDKQVSMLISANLVTKEVPAR*KEHTDE
Trigger: TTCATCTGTGTGCTCTTTGCAACGTGCGGGTACTTC...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CCA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCATGTCTTTGGTATGTTTaGTCCCAAGGAAATGGCCCT +
Preference number: 4 (lower is better)
Translates to: DKQVSMLISANLVTKRQPCLWYV*SQGNGP
Trigger: AGGGCCATTTCCTTGGGACCAAACATACCAAAGACA...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CCA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCAACTGCTAAGACGGTGTaGAACACTGATGAAAGAGTC +
Preference number: 4 (lower is better)
Translates to: DKQVSMLISANLVTKRQPTAKTV*NTDERV
Trigger: GACTCTTTCATCAGTGTTCCACACCGTCTTAGCAGT...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR TCA 90 bp TTTTTCCATATTGGCATAAAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTCCCCGACGGGAAACATaGCACAGGCCATTATCTTAT +
Preference number: 4 (lower is better)
Translates to: FFHIGIKTKDKQVSMLISPRRET*HRPLSY
Trigger: ATAAGATAATGGCCTGTGTCATGTTTCCCGTCGGGG...ACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTTTATGCCAATATGGAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127623.8
CDS-3UTR CCA 90 bp AAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAATGTCTTTGGTATGTTTaGTCCCAAGGAAATGGCCCT +
Preference number: 4 (lower is better)
Translates to: KDKQVSMLISANLVTKRQCLWYV*SQGNGP
Trigger: AGGGCCATTTCCTTGGGACCAAACATACCAAAGACA...TTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CCA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCAAGCATTGTCTGTCTTTaGTATGTTTGGTCCCAAGGA +
Preference number: 4 (lower is better)
Translates to: DKQVSMLISANLVTKRQPSIVCL*YVWSQG
Trigger: TCCTTGGGACCAAACATACCAAAGACAGACAATGCT...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CCA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCATGGCAATTACCTCTCTaGTCACAAAGCATTCAATCG +
Preference number: 4 (lower is better)
Translates to: DKQVSMLISANLVTKRQPWQLPL*SQSIQS
Trigger: CGATTGAATGCTTTGTGACCAGAGAGGTAATTGCCA...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CCA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGACTGCTAAGACGGTGTaGAACACTGATGAAAGAGTC +
Preference number: 4 (lower is better)
Translates to: KTKDKQVSMLISANLVTKTAKTV*NTDERV
Trigger: GACTCTTTCATCAGTGTTCCACACCGTCTTAGCAGT...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR TCA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCAACTCCTGGGAGTCTTTaGAAAACTTTGCTCAAAGTA +
Preference number: 4 (lower is better)
Translates to: DKQVSMLISANLVTKRQPTPGSL*KTLLKV
Trigger: TACTTTGAGCAAAGTTTTTCAAAGACTCCCAGGAGT...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112420.8
CDS-3UTR TCA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGCAAAGAGCACACAGATaGATACAGAAACCAAGATGG +
Preference number: 4 (lower is better)
Translates to: KTKDKQVSMLISANLVTKQRAHR*IQKPRW
Trigger: CCATCTTGGTTTCTGTATTCATCTGTGTGCTCTTTG...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR GCA 90 bp TTTTTCCATATTGGCATAAAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGAAGTACCCGCACGTTaGAAAGAGCACACAGATGAA +
Preference number: 4 (lower is better)
Translates to: FFHIGIKTKDKQVSMLISEVPAR*KEHTDE
Trigger: TTCATCTGTGTGCTCTTTGCAACGTGCGGGTACTTC...ACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTTTATGCCAATATGGAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127623.8
CDS-3UTR CCA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGTCCAGGGTCAACTCCTaGGAGTCTTTGAAAAACTTT +
Preference number: 4 (lower is better)
Translates to: KTKDKQVSMLISANLVTKSRVNS*ESLKNF
Trigger: AAAGTTTTTCAAAGACTCCCAGGAGTTGACCCTGGA...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112420.8
CDS-3UTR CCA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGCATTGTCTGTCTTTaGTATGTTTGGTCCCAAGGA +
Preference number: 4 (lower is better)
Translates to: KTKDKQVSMLISANLVTKSIVCL*YVWSQG
Trigger: TCCTTGGGACCAAACATACCAAAGACAGACAATGCT...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CCA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGGAAGCAGTTATGGTaGCAAATGAACGCAAAAGAC +
Preference number: 4 (lower is better)
Translates to: KTKDKQVSMLISANLVTKRKQLW*QMNAKD
Trigger: GTCTTTTGCGTTCATTTGCCACCATAACTGCTTCCT...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CCA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCAACTAGGAAGCAGTTATaGTGGCAAATGAACGCAAAA +
Preference number: 4 (lower is better)
Translates to: DKQVSMLISANLVTKRQPTRKQL*WQMNAK
Trigger: TTTTGCGTTCATTTGCCACCATAACTGCTTCCTAGT...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CCA 90 bp AAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAATGGCAATTACCTCTCTaGTCACAAAGCATTCAATCG +
Preference number: 4 (lower is better)
Translates to: KDKQVSMLISANLVTKRQWQLPL*SQSIQS
Trigger: CGATTGAATGCTTTGTGACCAGAGAGGTAATTGCCA...TTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR TCA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCAAGTACATGTAACCGTTaGAACCACAATAATGAAGTG +
Preference number: 4 (lower is better)
Translates to: DKQVSMLISANLVTKRQPSTCNR*NHNNEV
Trigger: CACTTCATTATTGTGGTTTCAACGGTTACATGTACT...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR TCA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCATTTCAGATAGCAAGCTaGGGGGATGATAAAAATCAA +
Preference number: 4 (lower is better)
Translates to: DKQVSMLISANLVTKRQPFQIAS*GDDKNQ
Trigger: TTGATTTTTATCATCCCCTCAGCTTGCTATCTGAAA...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR TCA 90 bp TTTTTCCATATTGGCATAAAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTACCAGGAGGTGTTTGTaGAGGAGACATTTTCAGGAA +
Preference number: 4 (lower is better)
Translates to: FFHIGIKTKDKQVSMLISTRRCL*RRHFQE
Trigger: TTCCTGAAAATGTCTCCTTCACAAACACCTCCTGGT...ACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTTTATGCCAATATGGAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127623.8
CDS-3UTR TCA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGTCCAGCTTGCTTCATTaGATAAGGCAATCCTATTAT +
Preference number: 4 (lower is better)
Translates to: KTKDKQVSMLISANLVTKSSLLH*IRQSYY
Trigger: ATAATAGGATTGCCTTATTCAATGAAGCAAGCTGGA...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112420.8
CDS-3UTR TCA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGTACATGTAACCGTTaGAACCACAATAATGAAGTG +
Preference number: 4 (lower is better)
Translates to: KTKDKQVSMLISANLVTKSTCNR*NHNNEV
Trigger: CACTTCATTATTGTGGTTTCAACGGTTACATGTACT...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR TCA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGTTTCAGATAGCAAGCTaGGGGGATGATAAAAATCAA +
Preference number: 4 (lower is better)
Translates to: KTKDKQVSMLISANLVTKFQIAS*GDDKNQ
Trigger: TTGATTTTTATCATCCCCTCAGCTTGCTATCTGAAA...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR GCA 90 bp AAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAAACCACAATAATGAAGTaGCGACTAATAAACCAACCT +
Preference number: 4 (lower is better)
Translates to: KDKQVSMLISANLVTKRQTTIMK*RLINQP
Trigger: AGGTTGGTTTATTAGTCGGCACTTCATTATTGTGGT...TTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR GCA 90 bp TTTTTCCATATTGGCATAAAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTACCACAATAATGAAGTaGCGACTAATAAACCAACCT +
Preference number: 4 (lower is better)
Translates to: FFHIGIKTKDKQVSMLISTTIMK*RLINQP
Trigger: AGGTTGGTTTATTAGTCGGCACTTCATTATTGTGGT...ACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTTTATGCCAATATGGAAAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127623.8
CDS CCA 90 bp GTTGCAAAGAGCACACAGATGAATACAGAAACCAAGATGGATGTGTaGATAATCCGGCGCCACTTCGCTACTGTGGGCTCTTCGAGAGAA +
Preference number: 5 (lower is better)
Translates to: VAKSTQMNTETKMDV*IIRRHFATVGSSRE
Trigger: TTCTCTCGAAGAGCCCACAGTAGCGAAGTGGCGCCGGATTATCCACACATCCATCTTGGTTTCTGTATTCATCTGTGTGCTCTTTGCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS CCA 90 bp CTGGATGGCATTGGGCTTTGCAAACACCCAAGCATTGTCTGTCTTTaGTATGTTTGGTCCCAAGGAAATGGCCCTTGTCATTACGATTCC +
Preference number: 5 (lower is better)
Translates to: LDGIGLCKHPSIVCL*YVWSQGNGPCHYDS
Trigger: GGAATCGTAATGACAAGGGCCATTTCCTTGGGACCAAACATACCAAAGACAGACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS CCA 90 bp CAGTTATGGTGGCAAATGAACGCAAAAGACATCACCCCAATAGCCTaGATGGCATTGGGCTTTGCAAACACCCAAGCATTGTCTGTCTTT +
Preference number: 5 (lower is better)
Translates to: QLWWQMNAKDITPIA*MALGFANTQALSVF
Trigger: AAAGACAGACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATCCAGGCTATTGGGGTGATGTCTTTTGCGTTCATTTGCCACCATAACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS-3UTR CAA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCAATAGCCTGGATGGCATaGGGCTTTGCAAACACCCAA +
Preference number: 5 (lower is better)
Translates to: DKQVSMLISANLVTKRQPIAWMA*GFANTQ
Trigger: TTGGGTGTTTGCAAAGCCCAATGCCATCCAGGCTAT...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS TCA 90 bp CCAGATCCTATAACAGAATTGACTACATTGAAAACAGCGGCAGACTaGCTAGATTTCCCTCCGTGTTCATGTCCGGAGATCAGGCTTTCT +
Preference number: 5 (lower is better)
Translates to: PDPITELTTLKTAAD*LDFPPCSCPEIRLS
Trigger: AGAAAGCCTGATCTCCGGACATGAACACGGAGGGAAATCTAGTCAGTCTGCCGCTGTTTTCAATGTAGTCAATTCTGTTATAGGATCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000152324.8
ENSMUST00000155962.3
CDS GCA 90 bp GACAATGGCAGAGTACATGTAACCGTTGAAACCACAATAATGAAGTaGCGACTAATAAACCAACCTCCAGGGTCAACTCCTGGGAGTCTT +
Preference number: 5 (lower is better)
Translates to: DNGRVHVTVETTIMK*RLINQPPGSTPGSL
Trigger: AAGACTCCCAGGAGTTGACCCTGGAGGTTGGTTTATTAGTCGGCACTTCATTATTGTGGTTTCAACGGTTACATGTACTCTGCCATTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000152324.8
ENSMUST00000155962.3
CDS GCA 90 bp CAAGTCTCCTTGAGTGAAGCCAGTAAAAGTGAAGTACCCGCACGTTaGAAAGAGCACACAGATGAATACAGAAACCAAGATGGATGTGTG +
Preference number: 5 (lower is better)
Translates to: QVSLSEASKSEVPAR*KEHTDEYRNQDGCV
Trigger: CACACATCCATCTTGGTTTCTGTATTCATCTGTGTGCTCTTTGCAACGTGCGGGTACTTCACTTTTACTGGCTTCACTCAAGGAGACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS-3UTR CAA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGCTGTCTTTGGTATGTTaGGTCCCAAGGAAATGGCCC +
Preference number: 5 (lower is better)
Translates to: KTKDKQVSMLISANLVTKLSLVC*VPRKWP
Trigger: GGGCCATTTCCTTGGGACCAAACATACCAAAGACAG...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CAA 90 bp AAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACTGTCTTTGGTATGTTaGGTCCCAAGGAAATGGCCC +
Preference number: 5 (lower is better)
Translates to: KDKQVSMLISANLVTKRQLSLVC*VPRKWP
Trigger: GGGCCATTTCCTTGGGACCAAACATACCAAAGACAG...TTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CAA 90 bp AAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAAGGATGGCATTGGGCTTaGCAAACACCCAAGCATTGT +
Preference number: 5 (lower is better)
Translates to: KDKQVSMLISANLVTKRQGWHWA*QTPKHC
Trigger: ACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATCC...TTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CAA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCACCAAGGAAATGGCCCTaGTCATTACGATTCCAAGAA +
Preference number: 5 (lower is better)
Translates to: DKQVSMLISANLVTKRQPPRKWP*SLRFQE
Trigger: TTCTTGGAATCGTAATGACAAGGGCCATTTCCTTGG...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CAA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCAGCGCAGAGCACACCATaGAGTTCTAAAACTATTCCA +
Preference number: 5 (lower is better)
Translates to: DKQVSMLISANLVTKRQPAQSTP*SSKTIP
Trigger: TGGAATAGTTTTAGAACTCAATGGTGTGCTCTGCGC...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS GCA 90 bp GACAATGGCAGAGTACATGTAACCGTTGAAACCACAATAATGAAGTaGCGACTAATAAACCAACCTCCAGGGTCAACTATGAAAGGGTAC +
Preference number: 5 (lower is better)
Translates to: DNGRVHVTVETTIMK*RLINQPPGSTMKGY
Trigger: GTACCCTTTCATAGTTGACCCTGGAGGTTGGTTTATTAGTCGGCACTTCATTATTGTGGTTTCAACGGTTACATGTACTCTGCCATTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127623.8
CDS-3UTR CAA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCAAGATCTTTCCAAGCTTaGCTATATCTCGGTACAGTG +
Preference number: 5 (lower is better)
Translates to: DKQVSMLISANLVTKRQPRSFQA*LYLGTV
Trigger: CACTGTACCGAGATATAGCAAAGCTTGGAAAGATCT...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CAA 90 bp TTTTTCCATATTGGCATAAAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGGATGGCATTGGGCTTaGCAAACACCCAAGCATTGT +
Preference number: 5 (lower is better)
Translates to: FFHIGIKTKDKQVSMLISGWHWA*QTPKHC
Trigger: ACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATCC...ACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTTTATGCCAATATGGAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127623.8
CDS-3UTR CAA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGGCGCAGAGCACACCATaGAGTTCTAAAACTATTCCA +
Preference number: 5 (lower is better)
Translates to: KTKDKQVSMLISANLVTKAQSTP*SSKTIP
Trigger: TGGAATAGTTTTAGAACTCAATGGTGTGCTCTGCGC...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CAA 90 bp AAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAAAGATCTTTCCAAGCTTaGCTATATCTCGGTACAGTG +
Preference number: 5 (lower is better)
Translates to: KDKQVSMLISANLVTKRQRSFQA*LYLGTV
Trigger: CACTGTACCGAGATATAGCAAAGCTTGGAAAGATCT...TTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CAA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCATTCAAACAAGTCTCCTaGAGTGAAGCCAGTAAAAGT +
Preference number: 5 (lower is better)
Translates to: DKQVSMLISANLVTKRQPFKQVS*SEASKS
Trigger: ACTTTTACTGGCTTCACTCAAGGAGACTTGTTTGAA...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112420.8
ENSMUST00000127623.8
CDS-3UTR CAA 90 bp GACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAGACAACCAATCCAGCTTGCTTCATaGAATAAGGCAATCCTATTA +
Preference number: 5 (lower is better)
Translates to: DKQVSMLISANLVTKRQPIQLAS*NKAILL
Trigger: TAATAGGATTGCCTTATTCAATGAAGCAAGCTGGAT...TGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112420.8
CDS-3UTR CAA 90 bp AAGACTAAGGACAAGCAAGTCTCCATGCTCATCAGTGCTAATCTTGTGACAAAGAACTCCTGGGAGTCTTaGAAAAACTTTGCTCAAAGT +
Preference number: 5 (lower is better)
Translates to: KTKDKQVSMLISANLVTKNSWES*KNFAQS
Trigger: ACTTTGAGCAAAGTTTTTCAAAGACTCCCAGGAGTT...CTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112420.8
CDS TCA 72 bp AGCCTACCACCATCACCACCGCCCCGACGGGAAACATaGCACAGGCCATTATCTTATCGGAATGTGTCCTTG +
Preference number: 6 (lower is better)
Translates to: SLPPSPPPRRET*HRPLSYRNVSL
Trigger: CAAGGACACATTCCGATAAGATAATGGCCTGTGTCATGTTTCCCGTCGGGGCGGTGGTGATGGTGGTAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
CDS CCA 72 bp AGCACACAGATGAATACAGAAACCAAGATGGATGTGTaGATAATCCGGCGCCACTTCGCTACTGTGGGCTCT +
Preference number: 6 (lower is better)
Translates to: STQMNTETKMDV*IIRRHFATVGS
Trigger: AGAGCCCACAGTAGCGAAGTGGCGCCGGATTATCCACACATCCATCTTGGTTTCTGTATTCATCTGTGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS CCA 72 bp TGGCAAATGAACGCAAAAGACATCACCCCAATAGCCTaGATGGCATTGGGCTTTGCAAACACCCAAGCATTG +
Preference number: 6 (lower is better)
Translates to: WQMNAKDITPIA*MALGFANTQAL
Trigger: CAATGCTTGGGTGTTTGCAAAGCCCAATGCCATCCAGGCTATTGGGGTGATGTCTTTTGCGTTCATTTGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS CAA 90 bp CCTGGATGGCATTGGGCTTTGCAAACACCCAAGCATTGTCTGTCTTaGGTATGTTTGGTCCCAAGGAAATGGCCCTTGTCATTACGATTC +
Preference number: 6 (lower is better)
Translates to: PGWHWALQTPKHCLS*VCLVPRKWPLSLRF
Trigger: GAATCGTAATGACAAGGGCCATTTCCTTGGGACCAAACATACCAAAGACAGACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATCCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS CAA 72 bp CATTGGGCTTTGCAAACACCCAAGCATTGTCTGTCTTaGGTATGTTTGGTCCCAAGGAAATGGCCCTTGTCA +
Preference number: 6 (lower is better)
Translates to: HWALQTPKHCLS*VCLVPRKWPLS
Trigger: TGACAAGGGCCATTTCCTTGGGACCAAACATACCAAAGACAGACAATGCTTGGGTGTTTGCAAAGCCCAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS CAA 72 bp AACGCAAAAGACATCACCCCAATAGCCTGGATGGCATaGGGCTTTGCAAACACCCAAGCATTGTCTGTCTTT +
Preference number: 6 (lower is better)
Translates to: NAKDITPIAWMA*GFANTQALSVF
Trigger: AAAGACAGACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATCCAGGCTATTGGGGTGATGTCTTTTGCGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS CAA 90 bp TGGCAAATGAACGCAAAAGACATCACCCCAATAGCCTGGATGGCATaGGGCTTTGCAAACACCCAAGCATTGTCTGTCTTTGGTATGTTT +
Preference number: 6 (lower is better)
Translates to: WQMNAKDITPIAWMA*GFANTQALSVFGMF
Trigger: AAACATACCAAAGACAGACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATCCAGGCTATTGGGGTGATGTCTTTTGCGTTCATTTGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS CCA 72 bp GTGCCGACTAATAAACCAACCTCCAGGGTCAACTCCTaGGAGTCTTTGAAAAACTTTGCTCAAAGTATCTCC +
Preference number: 6 (lower is better)
Translates to: VPTNKPTSRVNS*ESLKNFAQSIS
Trigger: GGAGATACTTTGAGCAAAGTTTTTCAAAGACTCCCAGGAGTTGACCCTGGAGGTTGGTTTATTAGTCGGCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000152324.8
ENSMUST00000155962.3
CDS TCA 72 bp ATAACAGAATTGACTACATTGAAAACAGCGGCAGACTaGCTAGATTTCCCTCCGTGTTCATGTCCGGAGATC +
Preference number: 6 (lower is better)
Translates to: ITELTTLKTAAD*LDFPPCSCPEI
Trigger: GATCTCCGGACATGAACACGGAGGGAAATCTAGTCAGTCTGCCGCTGTTTTCAATGTAGTCAATTCTGTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000152324.8
ENSMUST00000155962.3
CDS CAA 72 bp TTGCAAACACCCAAGCATTGTCTGTCTTTGGTATGTTaGGTCCCAAGGAAATGGCCCTTGTCATTACGATTC +
Preference number: 6 (lower is better)
Translates to: LQTPKHCLSLVC*VPRKWPLSLRF
Trigger: GAATCGTAATGACAAGGGCCATTTCCTTGGGACCAAACATACCAAAGACAGACAATGCTTGGGTGTTTGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS GCA 72 bp AGAGTACATGTAACCGTTGAAACCACAATAATGAAGTaGCGACTAATAAACCAACCTCCAGGGTCAACTCCT +
Preference number: 6 (lower is better)
Translates to: RVHVTVETTIMK*RLINQPPGSTP
Trigger: AGGAGTTGACCCTGGAGGTTGGTTTATTAGTCGGCACTTCATTATTGTGGTTTCAACGGTTACATGTACTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000152324.8
ENSMUST00000155962.3
CDS GCA 72 bp TTGAGTGAAGCCAGTAAAAGTGAAGTACCCGCACGTTaGAAAGAGCACACAGATGAATACAGAAACCAAGAT +
Preference number: 6 (lower is better)
Translates to: LSEASKSEVPAR*KEHTDEYRNQD
Trigger: ATCTTGGTTTCTGTATTCATCTGTGTGCTCTTTGCAACGTGCGGGTACTTCACTTTTACTGGCTTCACTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8
ENSMUST00000152324.8
CDS GCA 72 bp AGAGTACATGTAACCGTTGAAACCACAATAATGAAGTaGCGACTAATAAACCAACCTCCAGGGTCAACTATG +
Preference number: 6 (lower is better)
Translates to: RVHVTVETTIMK*RLINQPPGSTM
Trigger: CATAGTTGACCCTGGAGGTTGGTTTATTAGTCGGCACTTCATTATTGTGGTTTCAACGGTTACATGTACTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127623.8
CDS TCA 72 bp AAGCAGTATTCCCAAGGGAAATCCAGCTTGCTTCATTaGATAAGGCAATCCTATTATCCCAGATCCTATAAC +
Preference number: 6 (lower is better)
Translates to: KQYSQGKSSLLH*IRQSYYPRSYN
Trigger: GTTATAGGATCTGGGATAATAGGATTGCCTTATTCAATGAAGCAAGCTGGATTTCCCTTGGGAATACTGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112420.8
ENSMUST00000152324.8
ENSMUST00000155962.3
CDS TCA 72 bp ATGTTGTCAGTTGAAGATGAGACCAGGAGGTGTTTGTaGAGGAGACATTTTCAGGAAAGCAGTAGAACATTT +
Preference number: 6 (lower is better)
Translates to: MLSVEDETRRCL*RRHFQESSRTF
Trigger: AAATGTTCTACTGCTTTCCTGAAAATGTCTCCTTCACAAACACCTCCTGGTCTCATCTTCAACTGACAACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112420.8
ENSMUST00000124918.8
ENSMUST00000127623.8