RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC37A4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032114

Ensembl transcript IDs: ENSMUST00000165839.3, ENSMUST00000213268.2, ENSMUST00000213388.2, ENSMUST00000215001.2, ENSMUST00000215121.2, ENSMUST00000215420.2

Found 174 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp GTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTaGCCCCCTGCCAAGAAGCCTTGGGGTACAGCAGAAACCACAGGC +
Preference number: 2 (lower is better)
Translates to: VDSSPPLGTEVLATI*PPAKKPWGTAETTG
Trigger: GCCTGTGGTTTCTGCTGTACCCCAAGGCTTCTTGGCAGGGGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
3UTR-3UTR TCA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCGGTAGAAACAGAAGCTaGTGGAGTCTAGAACCAAAC +
Preference number: 2 (lower is better)
Translates to: VVDSSPPLGTEVLATILPGRNRS*WSLEPN
Trigger: GTTTGGTTCTAGACTCCATCAGCTTCTGTTTCTACC...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
3UTR-3UTR TCA 90 bp GCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGTGGTGGACTCCGGTAGAAACAGAAGCTaGTGGAGTCTAGAACCAAAC +
Preference number: 2 (lower is better)
Translates to: ALYILPFCPRVFMRVVDSGRNRS*WSLEPN
Trigger: GTTTGGTTCTAGACTCCATCAGCTTCTGTTTCTACC...GGAGTCCACCACTCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
3UTR-3UTR GCA 90 bp GCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGTGGTGGACTCCTATTGGCAACAATTTTaGCCCCTGCCAAGAAGCCTT +
Preference number: 2 (lower is better)
Translates to: ALYILPFCPRVFMRVVDSYWQQF*PLPRSL
Trigger: AAGGCTTCTTGGCAGGGGGCAAAATTGTTGCCAATA...GGAGTCCACCACTCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
3UTR-3UTR CCA 90 bp GCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGTGGTGGACTCCGGTTCAGAGAGACAGTaGAGACACAGAAACGTAAAG +
Preference number: 2 (lower is better)
Translates to: ALYILPFCPRVFMRVVDSGSERQ*RHRNVK
Trigger: CTTTACGTTTCTGTGTCTCCACTGTCTCTCTGAACC...GGAGTCCACCACTCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
3UTR-3UTR TCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTAGGTAGAAACAGAAGCTaGTGGAGTCTAGAACCAAAC +
Preference number: 2 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVGRNRS*WSLEPN
Trigger: GTTTGGTTCTAGACTCCATCAGCTTCTGTTTCTACC...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
3UTR-3UTR CCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTAATTTTAAATAGAGCATaGGATGGGAGTCGGGACCTC +
Preference number: 2 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVILNRA*DGSRDL
Trigger: GAGGTCCCGACTCCCATCCCATGCTCTATTTAAAAT...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
3UTR CAA 90 bp TTTATTGATCTATACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTaGTCCCAGGGTATTCATGAGAGTGGTGGACTCCTCTCCTCCCTT +
Preference number: 2 (lower is better)
Translates to: FIDLYKSVCPLYSSL*SQGIHESGGLLSSL
Trigger: AAGGGAGGAGAGGAGTCCACCACTCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGTATAGATCAATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
3UTR-3UTR CCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAATTTTAAATAGAGCATaGGATGGGAGTCGGGACCTC +
Preference number: 2 (lower is better)
Translates to: TSRFALYILPFCPRVFMRILNRA*DGSRDL
Trigger: GAGGTCCCGACTCCCATCCCATGCTCTATTTAAAAT...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
3UTR GCA 72 bp ATCAAATCTAGCTTTATTGATCTATACAAGTCGGTTTaGCCTCTATATTCTTCCCTTTTGTCCCAGGGTATT +
Preference number: 3 (lower is better)
Translates to: IKSSFIDLYKSV*PLYSSLLSQGI
Trigger: AATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGTATAGATCAATAAAGCTAGATTTGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCACAGGGCCAGTGTGCTaGGCCAGCTGTAGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: VVDSSPPLGTEVLATILPTGPVC*ASCSSG
Trigger: CCCAGAGCTACAGCTGGCGCAGCACACTGGCCCTGT...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCCGCTCACAAACTTGCTaGTGGCGTAGGCTGCCGACT +
Preference number: 4 (lower is better)
Translates to: VVDSSPPLGTEVLATILPRSQTC*WRRLPT
Trigger: AGTCGGCAGCCTACGCCATCAGCAAGTTTGTGAGCG...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCGCTGATGGCGTAGGCTaGCGACTGGCTGCTTGTGAT +
Preference number: 4 (lower is better)
Translates to: VVDSSPPLGTEVLATILPADGVG*RLAACD
Trigger: ATCACAAGCAGCCAGTCGGCAGCCTACGCCATCAGC...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACCAGACAGGGCCAGTGTaGTGCGCCAGCTGTAGCTCT +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHQTGPV*CASCSS
Trigger: AGAGCTACAGCTGGCGCAGCACACTGGCCCTGTCTG...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GGAGACACTCTGAATTCAGGAGTTGCCTGTCTGCCAGAAGGTAGAAACAGAAGCCCCACAAGGGCGGACTaGCCTCGCTCCTGGATAAGG +
Preference number: 4 (lower is better)
Translates to: GDTLNSGVACLPEGRNRSPTRAD*PRSWIR
Trigger: CCTTATCCAGGAGCGAGGGCAGTCCGCCCTTGTGGG...GCTTCTGTTTCTACCTTCTGGCAGACAGGCAACTCCTGAATTCAGAGTGTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCCCACGAGGTAGCCAGTaGACAGCACCCAGAGATAGG +
Preference number: 4 (lower is better)
Translates to: VVDSSPPLGTEVLATILPPRGSQ*TAPRDR
Trigger: CCTATCTCTGGGTGCTGTCCACTGGCTACCTCGTGG...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCGACTGCCCTCGCTCCTaGATAAGGAAGAACTGGCCC +
Preference number: 4 (lower is better)
Translates to: VVDSSPPLGTEVLATILPDCPRS*IRKNWP
Trigger: GGGCCAGTTCTTCCTTATCCAGGAGCGAGGGCAGTC...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
3UTR CAA 72 bp GGGATGGGAGTCGGGACCTCATTAGCCACTGGTAACTaGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGA +
Preference number: 4 (lower is better)
Translates to: GMGVGTSLATGN*QHHGGSERQWR
Trigger: TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGTCCCGACTCCCATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGCGACCTCGAGGGCACTaGTGTAGGAGCTACCCACAA +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWRPRGH*CRSYPQ
Trigger: TTGTGGGTAGCTCCTACATCAGTGCCCTCGAGGTCG...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACGCTGATGGCGTAGGCTaGCGACTGGCTGCTTGTGAT +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHADGVG*RLAACD
Trigger: ATCACAAGCAGCCAGTCGGCAGCCTACGCCATCAGC...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACAGACAGGGCCAGTGTaGTGCGCCAGCTGTAGCTCT +
Preference number: 4 (lower is better)
Translates to: SLATGNLQHHGGSERQWRQTGPV*CASCSS
Trigger: AGAGCTACAGCTGGCGCAGCACACTGGCCCTGTCTG...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACCCACGAGGTAGCCAGTaGACAGCACCCAGAGATAGG +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHPRGSQ*TAPRDR
Trigger: CCTATCTCTGGGTGCTGTCCACTGGCTACCTCGTGG...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGAGCCCTGCCTTCGCCATaGCCCTGTCTGACAGGTAAC +
Preference number: 4 (lower is better)
Translates to: SLATGNLQHHGGSERQWRALPSP*PCLTGN
Trigger: GTTACCTGTCAGACAGGGCCATGGCGAAGGCAGGGC...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCCCACCAAGGAGGGCATaGCAAAGGAGAAGGTTTTGC +
Preference number: 4 (lower is better)
Translates to: VVDSSPPLGTEVLATILPPPRRA*QRRRFC
Trigger: GCAAAACCTTCTCCTTTGTCATGCCCTCCTTGGTGG...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACGCTCACAAACTTGCTaGTGGCGTAGGCTGCCGACT +
Preference number: 4 (lower is better)
Translates to: SLATGNLQHHGGSERQWRRSQTC*WRRLPT
Trigger: AGTCGGCAGCCTACGCCATCAGCAAGTTTGTGAGCG...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp GGAGACACTCTGAATTCAGGAGTTGCCTGTCTGCCAGAAGGTAGAAACAGAAGCCGCTCACAAACTTGCTaGTGGCGTAGGCTGCCGACT +
Preference number: 4 (lower is better)
Translates to: GDTLNSGVACLPEGRNRSRSQTC*WRRLPT
Trigger: AGTCGGCAGCCTACGCCATCAGCAAGTTTGTGAGCG...GCTTCTGTTTCTACCTTCTGGCAGACAGGCAACTCCTGAATTCAGAGTGTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGTGGTGGACTCCGCTGATGGCGTAGGCTaGCGACTGGCTGCTTGTGAT +
Preference number: 4 (lower is better)
Translates to: ALYILPFCPRVFMRVVDSADGVG*RLAACD
Trigger: ATCACAAGCAGCCAGTCGGCAGCCTACGCCATCAGC...GGAGTCCACCACTCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCTTCCAGCCAGGTTCATaGTGGTTGACAACACAGCCC +
Preference number: 4 (lower is better)
Translates to: VVDSSPPLGTEVLATILPFQPGS*WLTTQP
Trigger: GGGCTGTGTTGTCAACCAGCATGAACCTGGCTGGAA...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GGAGACACTCTGAATTCAGGAGTTGCCTGTCTGCCAGAAGGTAGAAACAGAAGCGACAACCACACACAGTaGCCCAGACAGGGCCAGTGT +
Preference number: 4 (lower is better)
Translates to: GDTLNSGVACLPEGRNRSDNHTQ*PRQGQC
Trigger: ACACTGGCCCTGTCTGGGGCACTGTGTGTGGTTGTC...GCTTCTGTTTCTACCTTCTGGCAGACAGGCAACTCCTGAATTCAGAGTGTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTACCCACAAGGGCGGACTaGCCTCGCTCCTGGATAAGG +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVPTRAD*PRSWIR
Trigger: CCTTATCCAGGAGCGAGGGCAGTCCGCCCTTGTGGG...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCTCCACAAACCACTTCTaGCACCCAGAAGGCTGTGCT +
Preference number: 4 (lower is better)
Translates to: VVDSSPPLGTEVLATILPSTNHF*HPEGCA
Trigger: AGCACAGCCTTCTGGGTGGCAGAAGTGGTTTGTGGA...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGCAGCCAGGTTCATGCTaGTTGACAACACAGCCCACC +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWQPGSC*LTTQPT
Trigger: GGTGGGCTGTGTTGTCAACCAGCATGAACCTGGCTG...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
3UTR CAA 72 bp TCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTaGCCCCCTGCCAAGAAGCCTTGGGGTACAGCAGAA +
Preference number: 4 (lower is better)
Translates to: SPPLGTEVLATI*PPAKKPWGTAE
Trigger: TTCTGCTGTACCCCAAGGCTTCTTGGCAGGGGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACCCACCAAGGAGGGCATaGCAAAGGAGAAGGTTTTGC +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHPPRRA*QRRRFC
Trigger: GCAAAACCTTCTCCTTTGTCATGCCCTCCTTGGTGG...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGCAGGTTCATGCTGGTTaGCAACACAGCCCACCAAGT +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWQVHAG*QHSPPS
Trigger: ACTTGGTGGGCTGTGTTGTCAACCAGCATGAACCTG...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACAGTAGCAATAGGCCGTaGCGAGGGTTCCCATACAGA +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHSSNRP*RGFPYR
Trigger: TCTGTATGGGAACCCTCGTCACGGCCTATTGCTACT...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGTAGCAATAGGCCGTaGCGAGGGTTCCCATACAGA +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWSSNRP*RGFPYR
Trigger: TCTGTATGGGAACCCTCGTCACGGCCTATTGCTACT...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACTTCCAGCCAGGTTCATaGTGGTTGACAACACAGCCC +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHFQPGS*WLTTQP
Trigger: GGGCTGTGTTGTCAACCAGCATGAACCTGGCTGGAA...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAACAGGGCCAGTGTGCTaGGCCAGCTGTAGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMRTGPVC*ASCSSG
Trigger: CCCAGAGCTACAGCTGGCGCAGCACACTGGCCCTGT...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGGCAGATCCTGTAGGGTaGTCTCCTCCTTTGATGAGC +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWADPVG*SPPLMS
Trigger: GCTCATCAAAGGAGGAGAGCACCCTACAGGATCTGC...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACGGTAACCAGCTGCAATaGTTCCTACAAGGCCTCCGA +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHGNQLQ*FLQGLR
Trigger: TCGGAGGCCTTGTAGGAAGCATTGCAGCTGGTTACC...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGGAGGAACATGGATGCTaGCATCCCAGCCATCATGAG +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWEEHGC*HPSHHE
Trigger: CTCATGATGGCTGGGATGGCAGCATCCATGTTCCTC...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACCACCCAGAAGGCTGTaGTCCAGCTATAGTGCTTGG +
Preference number: 4 (lower is better)
Translates to: SLATGNLQHHGGSERQWRPPRRL*SSYSAW
Trigger: CCAAGCACTATAGCTGGAGCACAGCCTTCTGGGTGG...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGTCCACAAACCACTTCTaGCACCCAGAAGGCTGTGCT +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWSTNHF*HPEGCA
Trigger: AGCACAGCCTTCTGGGTGGCAGAAGTGGTTTGTGGA...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGACATGGCCGCAAATATaGCAGTGCGATAGTAGCCGT +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWTWPQI*QCDSSR
Trigger: ACGGCTACTATCGCACTGTCATATTTGCGGCCATGT...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTACGACCTCGAGGGCACTaGTGTAGGAGCTACCCACAA +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVRPRGH*CRSYPQ
Trigger: TTGTGGGTAGCTCCTACATCAGTGCCCTCGAGGTCG...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp GGAGACACTCTGAATTCAGGAGTTGCCTGTCTGCCAGAAGGTAGAAACAGAAGCAGTAGCAATAGGCCGTaGCGAGGGTTCCCATACAGA +
Preference number: 4 (lower is better)
Translates to: GDTLNSGVACLPEGRNRSSSNRP*RGFPYR
Trigger: TCTGTATGGGAACCCTCGTCACGGCCTATTGCTACT...GCTTCTGTTTCTACCTTCTGGCAGACAGGCAACTCCTGAATTCAGAGTGTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTACAGGGCCAGTGTGCTaGGCCAGCTGTAGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: EPNIIILNRAWDGSRDLITGPVC*ASCSSG
Trigger: CCCAGAGCTACAGCTGGCGCAGCACACTGGCCCTGT...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTAGACAACCACACACAGTaGCCCAGACAGGGCCAGTGT +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVDNHTQ*PRQGQC
Trigger: ACACTGGCCCTGTCTGGGGCACTGTGTGTGGTTGTC...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GGAGACACTCTGAATTCAGGAGTTGCCTGTCTGCCAGAAGGTAGAAACAGAAGCGCAGATCCTGTAGGGTaGTCTCCTCCTTTGATGAGC +
Preference number: 4 (lower is better)
Translates to: GDTLNSGVACLPEGRNRSADPVG*SPPLMS
Trigger: GCTCATCAAAGGAGGAGAGCACCCTACAGGATCTGC...GCTTCTGTTTCTACCTTCTGGCAGACAGGCAACTCCTGAATTCAGAGTGTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTCCCACAAGGGCGGACTaGCCTCGCTCCTGGATAAGG +
Preference number: 4 (lower is better)
Translates to: EPNIIILNRAWDGSRDLIPTRAD*PRSWIR
Trigger: CCTTATCCAGGAGCGAGGGCAGTCCGCCCTTGTGGG...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGGAAGAGGAACATGGATaGTGCCATCCCAGCCATCAT +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWEEEHG*CHPSHH
Trigger: ATGATGGCTGGGATGGCAGCATCCATGTTCCTCTTC...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGATCCACAAACCACTTCTaGCACCCAGAAGGCTGTGCT +
Preference number: 4 (lower is better)
Translates to: SLATGNLQHHGGSERQWRSTNHF*HPEGCA
Trigger: AGCACAGCCTTCTGGGTGGCAGAAGTGGTTTGTGGA...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACCACCAAGTGCCAAACTaGGATGGCTCAAACCACTTC +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHHQVPN*DGSNHF
Trigger: GAAGTGGTTTGAGCCATCCCAGTTTGGCACTTGGTG...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTAGACTGCCCTCGCTCCTaGATAAGGAAGAACTGGCCC +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVDCPRS*IRKNWP
Trigger: GGGCCAGTTCTTCCTTATCCAGGAGCGAGGGCAGTC...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGCCCTGCCTTCGCCATaGCCCTGTCTGACAGGTAAC +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMRALPSP*PCLTGN
Trigger: GTTACCTGTCAGACAGGGCCATGGCGAAGGCAGGGC...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGGTTCCACACAAGTTaGGAGGTGCACTCTCATTGG +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWRFHTS*EVHSHW
Trigger: CCAATGAGAGTGCACCTCCCAACTTGTGTGGAACCT...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACAGGTTCCACACAAGTTaGGAGGTGCACTCTCATTGG +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHRFHTS*EVHSHW
Trigger: CCAATGAGAGTGCACCTCCCAACTTGTGTGGAACCT...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCAGAAGGTTTTGCGGTTaGAATAGTACAGGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: VVDSSPPLGTEVLATILPRRFCG*NSTGCS
Trigger: GCTACAGCCTGTACTATTTCAACCGCAAAACCTTCT...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp AACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACAGAAACGTAAAGCACTGTGGAGCTCCATaGGAAGACTACGTTGACCAG +
Preference number: 4 (lower is better)
Translates to: NLQHHGGSERQWRHRNVKHCGAP*EDYVDQ
Trigger: CTGGTCAACGTAGTCTTCTCATGGAGCTCCACAGTG...CTTTACGTTTCTGTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGTCCCACAATAGCATaGGAGGTTCCACACAAGTTG +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWSPTIA*EVPHKL
Trigger: CAACTTGTGTGGAACCTCTCATGCTATTGTGGGACT...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTCAGACAGGGCCAGTGTaGTGCGCCAGCTGTAGCTCT +
Preference number: 4 (lower is better)
Translates to: EPNIIILNRAWDGSRDLIQTGPV*CASCSS
Trigger: AGAGCTACAGCTGGCGCAGCACACTGGCCCTGTCTG...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTATTGATGAGCCCTTTTTaGCCTTGGAGGGGGCAGGGT +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVLMSPF*PWRGQG
Trigger: ACCCTGCCCCCTCCAAGGGCAAAAAGGGCTCATCAA...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp AACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACAGAAACGTAAAGGCAGATCCTGTAGGGTaGTCTCCTCCTTTGATGAGC +
Preference number: 4 (lower is better)
Translates to: NLQHHGGSERQWRHRNVKADPVG*SPPLMS
Trigger: GCTCATCAAAGGAGGAGAGCACCCTACAGGATCTGC...CTTTACGTTTCTGTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp AACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACAGAAACGTAAAGGAGGAACATGGATGCTaGCATCCCAGCCATCATGAG +
Preference number: 4 (lower is better)
Translates to: NLQHHGGSERQWRHRNVKEEHGC*HPSHHE
Trigger: CTCATGATGGCTGGGATGGCAGCATCCATGTTCCTC...CTTTACGTTTCTGTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACACACAAGTTGGGAGGTaGACTCTCATTGGCTATGAC +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHTQVGR*TLIGYD
Trigger: GTCATAGCCAATGAGAGTGCACCTCCCAACTTGTGT...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTACCACCCAGAAGGCTGTaGTCCAGCTATAGTGCTTGG +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVPPRRL*SSYSAW
Trigger: CCAAGCACTATAGCTGGAGCACAGCCTTCTGGGTGG...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACTCGGCCCATCTTGGTaGGGATATTTCGAAGCAAGA +
Preference number: 4 (lower is better)
Translates to: SLATGNLQHHGGSERQWRLGPSW*GYFEAR
Trigger: TCTTGCTTCGAAATATCCGCACCAAGATGGGCCGAG...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGTGGTGGACTCCCTCGGCCCATCTTGGTaGGGATATTTCGAAGCAAGA +
Preference number: 4 (lower is better)
Translates to: ALYILPFCPRVFMRVVDSLGPSW*GYFEAR
Trigger: TCTTGCTTCGAAATATCCGCACCAAGATGGGCCGAG...GGAGTCCACCACTCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGCAAAGGCTGACACTGTaGAGCTCCATGAGAAGACTA +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWQRLTL*SSMRRL
Trigger: TAGTCTTCTCATGGAGCTCCACAGTGTCAGCCTTTG...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTACAGCCAGGTTCATGCTaGTTGACAACACAGCCCACC +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVQPGSC*LTTQPT
Trigger: GGTGGGCTGTGTTGTCAACCAGCATGAACCTGGCTG...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGACCACGAGGTAGCCAGTaGACAGCACCCAGAGATAGG +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMRPRGSQ*TAPRDR
Trigger: CCTATCTCTGGGTGCTGTCCACTGGCTACCTCGTGG...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGTGGATAAGGAAGAACTaGCCCCAGTCTGTACAGCAA +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWWIRKN*PQSVQQ
Trigger: TTGCTGTACAGACTGGGGCCAGTTCTTCCTTATCCA...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGACTGCCCTCGCTCCTaGATAAGGAAGAACTGGCCC +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMRDCPRS*IRKNWP
Trigger: GGGCCAGTTCTTCCTTATCCAGGAGCGAGGGCAGTC...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTGCCCTGCCTTCGCCATaGCCCTGTCTGACAGGTAAC +
Preference number: 4 (lower is better)
Translates to: EPNIIILNRAWDGSRDLIALPSP*PCLTGN
Trigger: GTTACCTGTCAGACAGGGCCATGGCGAAGGCAGGGC...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGAAGGTTCCACACAAGTTaGGAGGTGCACTCTCATTGG +
Preference number: 4 (lower is better)
Translates to: SLATGNLQHHGGSERQWRRFHTS*EVHSHW
Trigger: CCAATGAGAGTGCACCTCCCAACTTGTGTGGAACCT...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGATACTCGGCCCATCTTaGTGCGGATATTTCGAAGCA +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWILGPS*CGYFEA
Trigger: TGCTTCGAAATATCCGCACCAAGATGGGCCGAGTAT...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACATACTCGGCCCATCTTaGTGCGGATATTTCGAAGCA +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHILGPS*CGYFEA
Trigger: TGCTTCGAAATATCCGCACCAAGATGGGCCGAGTAT...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACAGAAGGTTTTGCGGTTaGAATAGTACAGGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: LATGNLQHHGGSERQWRHRRFCG*NSTGCS
Trigger: GCTACAGCCTGTACTATTTCAACCGCAAAACCTTCT...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTACCACCAAGGAGGGCATaGCAAAGGAGAAGGTTTTGC +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVPPRRA*QRRRFC
Trigger: GCAAAACCTTCTCCTTTGTCATGCCCTCCTTGGTGG...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTACACTGTGGAGCTCCATaGGAAGACTACGTTGACCAG +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVHCGAP*EDYVDQ
Trigger: CTGGTCAACGTAGTCTTCTCATGGAGCTCCACAGTG...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp GGAGACACTCTGAATTCAGGAGTTGCCTGTCTGCCAGAAGGTAGAAACAGAAGCAGTCCCACAATAGCATaGGAGGTTCCACACAAGTTG +
Preference number: 4 (lower is better)
Translates to: GDTLNSGVACLPEGRNRSSPTIA*EVPHKL
Trigger: CAACTTGTGTGGAACCTCTCATGCTATTGTGGGACT...GCTTCTGTTTCTACCTTCTGGCAGACAGGCAACTCCTGAATTCAGAGTGTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTGACAACCACACACAGTaGCCCAGACAGGGCCAGTGT +
Preference number: 4 (lower is better)
Translates to: EPNIIILNRAWDGSRDLIDNHTQ*PRQGQC
Trigger: ACACTGGCCCTGTCTGGGGCACTGTGTGTGGTTGTC...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGAACACAAGTTGGGAGGTaGACTCTCATTGGCTATGAC +
Preference number: 4 (lower is better)
Translates to: SLATGNLQHHGGSERQWRTQVGR*TLIGYD
Trigger: GTCATAGCCAATGAGAGTGCACCTCCCAACTTGTGT...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGACCACCCAGAAGGCTGTaGTCCAGCTATAGTGCTTGG +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMRPPRRL*SSYSAW
Trigger: CCAAGCACTATAGCTGGAGCACAGCCTTCTGGGTGG...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGTGGTGGACTCCCAAAGGCTGACACTGTaGAGCTCCATGAGAAGACTA +
Preference number: 4 (lower is better)
Translates to: ALYILPFCPRVFMRVVDSQRLTL*SSMRRL
Trigger: TAGTCTTCTCATGGAGCTCCACAGTGTCAGCCTTTG...GGAGTCCACCACTCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGACAGCCAGGTTCATGCTaGTTGACAACACAGCCCACC +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMRQPGSC*LTTQPT
Trigger: GGTGGGCTGTGTTGTCAACCAGCATGAACCTGGCTG...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGTGGTGGACTCCTGGATAAGGAAGAACTaGCCCCAGTCTGTACAGCAA +
Preference number: 4 (lower is better)
Translates to: ALYILPFCPRVFMRVVDSWIRKN*PQSVQQ
Trigger: TTGCTGTACAGACTGGGGCCAGTTCTTCCTTATCCA...GGAGTCCACCACTCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCCTCCAAACAAGGCAATaGGACCATAAGAAGAGAAAC +
Preference number: 4 (lower is better)
Translates to: VVDSSPPLGTEVLATILPLQTRQ*DHKKRN
Trigger: GTTTCTCTTCTTATGGTCCCATTGCCTTGTTTGGAG...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GGAGACACTCTGAATTCAGGAGTTGCCTGTCTGCCAGAAGGTAGAAACAGAAGCAGAAGACAACTGTGCTaGCTCCACAAACCACTTCTG +
Preference number: 4 (lower is better)
Translates to: GDTLNSGVACLPEGRNRSRRQLC*LHKPLL
Trigger: CAGAAGTGGTTTGTGGAGCCAGCACAGTTGTCTTCT...GCTTCTGTTTCTACCTTCTGGCAGACAGGCAACTCCTGAATTCAGAGTGTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTAACATGGCCGCAAATATaGCAGTGCGATAGTAGCCGT +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVTWPQI*QCDSSR
Trigger: ACGGCTACTATCGCACTGTCATATTTGCGGCCATGT...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp GGAGACACTCTGAATTCAGGAGTTGCCTGTCTGCCAGAAGGTAGAAACAGAAGCAGAAGGTTTTGCGGTTaGAATAGTACAGGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: GDTLNSGVACLPEGRNRSRRFCG*NSTGCS
Trigger: GCTACAGCCTGTACTATTTCAACCGCAAAACCTTCT...GCTTCTGTTTCTACCTTCTGGCAGACAGGCAACTCCTGAATTCAGAGTGTCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGACAGGTTCATGCTGGTTaGCAACACAGCCCACCAAGT +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMRQVHAG*QHSPPS
Trigger: ACTTGGTGGGCTGTGTTGTCAACCAGCATGAACCTG...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTTTGATGAGCCCTTTTTaGCCTTGGAGGGGGCAGGGT +
Preference number: 4 (lower is better)
Translates to: EPNIIILNRAWDGSRDLILMSPF*PWRGQG
Trigger: ACCCTGCCCCCTCCAAGGGCAAAAAGGGCTCATCAA...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGGTAACCAGCTGCAATaGTTCCTACAAGGCCTCCGA +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMRGNQLQ*FLQGLR
Trigger: TCGGAGGCCTTGTAGGAAGCATTGCAGCTGGTTACC...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGAGGAACATGGATGCTaGCATCCCAGCCATCATGAG +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMREEHGC*HPSHHE
Trigger: CTCATGATGGCTGGGATGGCAGCATCCATGTTCCTC...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTACTCGGCCCATCTTGGTaGGGATATTTCGAAGCAAGA +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVLGPSW*GYFEAR
Trigger: TCTTGCTTCGAAATATCCGCACCAAGATGGGCCGAG...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GGAGACACTCTGAATTCAGGAGTTGCCTGTCTGCCAGAAGGTAGAAACAGAAGCTCAGCAGGTTCATTGTaGATAAGCAGCAGACAGAAG +
Preference number: 4 (lower is better)
Translates to: GDTLNSGVACLPEGRNRSSAGSL*ISSRQK
Trigger: CTTCTGTCTGCTGCTTATCCACAATGAACCTGCTGA...GCTTCTGTTTCTACCTTCTGGCAGACAGGCAACTCCTGAATTCAGAGTGTCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGCTCCAAACAAGGCAATaGGACCATAAGAAGAGAAAC +
Preference number: 4 (lower is better)
Translates to: TSLATGNLQHHGGSERQWLQTRQ*DHKKRN
Trigger: GTTTCTCTTCTTATGGTCCCATTGCCTTGTTTGGAG...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp AACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACAGAAACGTAAAGATACTCGGCCCATCTTaGTGCGGATATTTCGAAGCA +
Preference number: 4 (lower is better)
Translates to: NLQHHGGSERQWRHRNVKILGPS*CGYFEA
Trigger: TGCTTCGAAATATCCGCACCAAGATGGGCCGAGTAT...CTTTACGTTTCTGTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTGGTAACCAGCTGCAATaGTTCCTACAAGGCCTCCGA +
Preference number: 4 (lower is better)
Translates to: EPNIIILNRAWDGSRDLIGNQLQ*FLQGLR
Trigger: TCGGAGGCCTTGTAGGAAGCATTGCAGCTGGTTACC...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGAAGAGGAACATGGATaGTGCCATCCCAGCCATCAT +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMREEEHG*CHPSHH
Trigger: ATGATGGCTGGGATGGCAGCATCCATGTTCCTCTTC...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR GCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTAACACAAGTTGGGAGGTaGACTCTCATTGGCTATGAC +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVTQVGR*TLIGYD
Trigger: GTCATAGCCAATGAGAGTGCACCTCCCAACTTGTGT...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACTCCAAACAAGGCAATaGGACCATAAGAAGAGAAAC +
Preference number: 4 (lower is better)
Translates to: SLATGNLQHHGGSERQWRLQTRQ*DHKKRN
Trigger: GTTTCTCTTCTTATGGTCCCATTGCCTTGTTTGGAG...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR TCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAAGTCCCACAATAGCATaGGAGGTTCCACACAAGTTG +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMRSPTIA*EVPHKL
Trigger: CAACTTGTGTGGAACCTCTCATGCTATTGTGGGACT...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTCACCAAGTGCCAAACTaGGATGGCTCAAACCACTTC +
Preference number: 4 (lower is better)
Translates to: EPNIIILNRAWDGSRDLIHQVPN*DGSNHF
Trigger: GAAGTGGTTTGAGCCATCCCAGTTTGGCACTTGGTG...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTATCAGCAGGTTCATTGTaGATAAGCAGCAGACAGAAG +
Preference number: 4 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVSAGSL*ISSRQK
Trigger: CTTCTGTCTGCTGCTTATCCACAATGAACCTGCTGA...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGATGGATAAGGAAGAACTaGCCCCAGTCTGTACAGCAA +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMRWIRKN*PQSVQQ
Trigger: TTGCTGTACAGACTGGGGCCAGTTCTTCCTTATCCA...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAAGAAGACAACTGTGCTaGCTCCACAAACCACTTCTG +
Preference number: 4 (lower is better)
Translates to: TSRFALYILPFCPRVFMRRRQLC*LHKPLL
Trigger: CAGAAGTGGTTTGTGGAGCCAGCACAGTTGTCTTCT...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTCAAAGGCTGACACTGTaGAGCTCCATGAGAAGACTA +
Preference number: 4 (lower is better)
Translates to: EPNIIILNRAWDGSRDLIQRLTL*SSMRRL
Trigger: TAGTCTTCTCATGGAGCTCCACAGTGTCAGCCTTTG...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTAGAAGACAACTGTGCTaGCTCCACAAACCACTTCTG +
Preference number: 4 (lower is better)
Translates to: EPNIIILNRAWDGSRDLIRRQLC*LHKPLL
Trigger: CAGAAGTGGTTTGTGGAGCCAGCACAGTTGTCTTCT...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CCA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTTCAGCAGGTTCATTGTaGATAAGCAGCAGACAGAAG +
Preference number: 4 (lower is better)
Translates to: EPNIIILNRAWDGSRDLISAGSL*ISSRQK
Trigger: CTTCTGTCTGCTGCTTATCCACAATGAACCTGCTGA...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 90 bp CAGGAGCAGCCCAGAGGAGAAGAGCCAGCGGGCGCTCATCTGATCTaGCAGAACCCCGCTCACAAACTTGCTGATGGCGTAGGCTGCCGA +
Preference number: 5 (lower is better)
Translates to: QEQPRGEEPAGAHLI*QNPAHKLADGVGCR
Trigger: TCGGCAGCCTACGCCATCAGCAAGTTTGTGAGCGGGGTTCTGTCAGATCAGATGAGCGCCCGCTGGCTCTTCTCCTCTGGGCTGCTCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215121.2
ENSMUST00000215420.2
CDS GCA 90 bp CTTGCTGATGGCGTAGGCTGCCGACTGGCTGCTTGTGATGAGCCCTaGAGCGAAGGGGAGCAGGGAGCAGGACACCCAAATCGTCCTTGT +
Preference number: 5 (lower is better)
Translates to: LADGVGCRLAACDEP*SEGEQGAGHPNRPC
Trigger: ACAAGGACGATTTGGGTGTCCTGCTCCCTGCTCCCCTTCGCTGCAGGGCTCATCACAAGCAGCCAGTCGGCAGCCTACGCCATCAGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215001.2
CDS CCA 90 bp GGCCGTGACGAGGGTTCCCATACAGAGACAGCCCTGCCTTCGCCATaGCCCTGTCTGACAGGTAACCAGCTGCAATGCTTCCTACAAGGC +
Preference number: 5 (lower is better)
Translates to: GRDEGSHTETALPSP*PCLTGNQLQCFLQG
Trigger: GCCTTGTAGGAAGCATTGCAGCTGGTTACCTGTCAGACAGGGCCATGGCGAAGGCAGGGCTGTCTCTGTATGGGAACCCTCGTCACGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 90 bp GAGCAGCAAAGGCTGACACTGTGGAGCTCCATGAGAAGACTACGTTaGCCAGACCAACCAGGAGCAGCCCAGAGGAGAAGAGCCAGCGGG +
Preference number: 5 (lower is better)
Translates to: EQQRLTLWSSMRRLR*PDQPGAAQRRRASG
Trigger: CCCGCTGGCTCTTCTCCTCTGGGCTGCTCCTGGTTGGTCTGGTCAACGTAGTCTTCTCATGGAGCTCCACAGTGTCAGCCTTTGCTGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 90 bp AGGGTTCCCATACAGAGACAGCCCTGCCTTCGCCATGGCCCTGTCTaGCAGGTAACCAGCTGCAATGCTTCCTACAAGGCCTCCGACCTC +
Preference number: 5 (lower is better)
Translates to: RVPIQRQPCLRHGPV*QVTSCNASYKASDL
Trigger: GAGGTCGGAGGCCTTGTAGGAAGCATTGCAGCTGGTTACCTGTCAGACAGGGCCATGGCGAAGGCAGGGCTGTCTCTGTATGGGAACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 90 bp AACATGGATGCTGCCATCCCAGCCATCATGAGTAGCAATAGGCCGTaGCGAGGGTTCCCATACAGAGACAGCCCTGCCTTCGCCATGGCC +
Preference number: 5 (lower is better)
Translates to: NMDAAIPAIMSSNRP*RGFPYRDSPAFAMA
Trigger: GGCCATGGCGAAGGCAGGGCTGTCTCTGTATGGGAACCCTCGTCACGGCCTATTGCTACTCATGATGGCTGGGATGGCAGCATCCATGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CCA 90 bp CTACCCACAAGGGCGGACTGCCCTCGCTCCTGGATAAGGAAGAACTaGCCCCAGTCTGTACAGCAAGTCTTTACTCCGAAGACCACGAGG +
Preference number: 5 (lower is better)
Translates to: LPTRADCPRSWIRKN*PQSVQQVFTPKTTR
Trigger: CCTCGTGGTCTTCGGAGTAAAGACTTGCTGTACAGACTGGGGCCAGTTCTTCCTTATCCAGGAGCGAGGGCAGTCCGCCCTTGTGGGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGGAGCCCTTTTTGCCCTaGGAGGGGGCAGGGTCCAGA +
Preference number: 5 (lower is better)
Translates to: TSLATGNLQHHGGSERQWEPFLP*EGAGSR
Trigger: TCTGGACCCTGCCCCCTCCAAGGGCAAAAAGGGCTC...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 90 bp CCGTTACTCGGAAGAGGAACATGGATGCTGCCATCCCAGCCATCATaGGTAGCAATAGGCCGTGACGAGGGTTCCCATACAGAGACAGCC +
Preference number: 5 (lower is better)
Translates to: PLLGRGTWMLPSQPS*VAIGRDEGSHTETA
Trigger: GGCTGTCTCTGTATGGGAACCCTCGTCACGGCCTATTGCTACTCATGATGGCTGGGATGGCAGCATCCATGTTCCTCTTCCGAGTAACGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGAGAGCCCTTTTTGCCCTaGGAGGGGGCAGGGTCCAGA +
Preference number: 5 (lower is better)
Translates to: SLATGNLQHHGGSERQWREPFLP*EGAGSR
Trigger: TCTGGACCCTGCCCCCTCCAAGGGCAAAAAGGGCTC...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CCA 90 bp ATCCAGATCTCATGCTCCGTAAAGCCTGTGAGCTCAGCCAGAGGATaGAGAGCAGGAGTCCAGAAAGCATCCTTGGGTGAGTCACTGGTC +
Preference number: 5 (lower is better)
Translates to: IQISCSVKPVSSARG*RAGVQKASLGESLV
Trigger: GACCAGTGACTCACCCAAGGATGCTTTCTGGACTCCTGCTCTCCATCCTCTGGCTGAGCTCACAGGCTTTACGGAGCATGAGATCTGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213268.2
CDS-3UTR CAA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCACCAGGATCCAGATCTaGGGTGAGTCACTGGTCACC +
Preference number: 5 (lower is better)
Translates to: VVDSSPPLGTEVLATILPTRIQI*GESLVT
Trigger: GGTGACCAGTGACTCACCCAAGATCTGGATCCTGGT...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 90 bp CGTTGCCAAGATAGGTCCCAAACTTCCAGCCAGGTTCATGCTGGTTaGCAACACAGCCCACCAAGTGCCAAACTGGGATGGCTCAAACCA +
Preference number: 5 (lower is better)
Translates to: RCQDRSQTSSQVHAG*QHSPPSAKLGWLKP
Trigger: TGGTTTGAGCCATCCCAGTTTGGCACTTGGTGGGCTGTGTTGTCAACCAGCATGAACCTGGCTGGAAGTTTGGGACCTATCTTGGCAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS GCA 90 bp AACTTCCAGCCAGGTTCATGCTGGTTGACAACACAGCCCACCAAGTaGCAAACTGGGATGGCTCAAACCACTTCCTCAGGATCTTCCCAC +
Preference number: 5 (lower is better)
Translates to: NFQPGSCWLTTQPTK*QTGMAQTTSSGSSH
Trigger: GTGGGAAGATCCTGAGGAAGTGGTTTGAGCCATCCCAGTTTGGCACTTGGTGGGCTGTGTTGTCAACCAGCATGAACCTGGCTGGAAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CCA 90 bp CCATCTTGGTGCGGATATTTCGAAGCAAGAAGAAGACAACTGTGCTaGCTCCACAAACCACTTCTGCCACCCAGAAGGCTGTGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: PSWCGYFEARRRQLC*LHKPLLPPRRLCSS
Trigger: GCTGGAGCACAGCCTTCTGGGTGGCAGAAGTGGTTTGTGGAGCCAGCACAGTTGTCTTCTTCTTGCTTCGAAATATCCGCACCAAGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACGGGTGCTCTCCTCCTTaGATGAGCCCTTTTTGCCCT +
Preference number: 5 (lower is better)
Translates to: LATGNLQHHGGSERQWRHGCSPP*MSPFCP
Trigger: AGGGCAAAAAGGGCTCATCAAAGGAGGAGAGCACCC...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCGAGGTTCCACACAAGTaGGGAGGTGCACTCTCATTG +
Preference number: 5 (lower is better)
Translates to: VVDSSPPLGTEVLATILPEVPHK*GGALSL
Trigger: CAATGAGAGTGCACCTCCCAACTTGTGTGGAACCTC...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS GCA 90 bp TCGAAGCAAGAAGAAGACAACTGTGCTGGCTCCACAAACCACTTCTaGCACCCAGAAGGCTGTGCTCCAGCTATAGTGCTTGGCAATGGT +
Preference number: 5 (lower is better)
Translates to: SKQEEDNCAGSTNHF*HPEGCAPAIVLGNG
Trigger: ACCATTGCCAAGCACTATAGCTGGAGCACAGCCTTCTGGGTGGCAGAAGTGGTTTGTGGAGCCAGCACAGTTGTCTTCTTCTTGCTTCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp GCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGTGGTGGACTCCGGGTGCTCTCCTCCTTaGATGAGCCCTTTTTGCCCT +
Preference number: 5 (lower is better)
Translates to: ALYILPFCPRVFMRVVDSGCSPP*MSPFCP
Trigger: AGGGCAAAAAGGGCTCATCAAAGGAGGAGAGCACCC...GGAGTCCACCACTCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp GGAGACACTCTGAATTCAGGAGTTGCCTGTCTGCCAGAAGGTAGAAACAGAAGCACCAGGATCCAGATCTaGGGTGAGTCACTGGTCACC +
Preference number: 5 (lower is better)
Translates to: GDTLNSGVACLPEGRNRSTRIQI*GESLVT
Trigger: GGTGACCAGTGACTCACCCAAGATCTGGATCCTGGT...GCTTCTGTTTCTACCTTCTGGCAGACAGGCAACTCCTGAATTCAGAGTGTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCGGAGGTGCACTCTCATaGGCTATGACTCCAAACAAG +
Preference number: 5 (lower is better)
Translates to: VVDSSPPLGTEVLATILPGGALS*AMTPNK
Trigger: CTTGTTTGGAGTCATAGCCAATGAGAGTGCACCTCC...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp ACCTCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGGAGGTTCCACACAAGTaGGGAGGTGCACTCTCATTG +
Preference number: 5 (lower is better)
Translates to: TSLATGNLQHHGGSERQWEVPHK*GGALSL
Trigger: CAATGAGAGTGCACCTCCCAACTTGTGTGGAACCTC...CCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp TTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGACACGATACTCGGCCCATCTaGGTGCGGATATTTCGAAGC +
Preference number: 5 (lower is better)
Translates to: LATGNLQHHGGSERQWRHDTRPI*VRIFRS
Trigger: GCTTCGAAATATCCGCACCAAGATGGGCCGAGTATC...GTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 90 bp CCAGCCAGAAATCCACCCACATTGGCCATAAGTCCCACAATAGCATaGGAGGTTCCACACAAGTTGGGAGGTGCACTCTCATTGGCTATG +
Preference number: 5 (lower is better)
Translates to: PARNPPTLAISPTIA*EVPHKLGGALSLAM
Trigger: CATAGCCAATGAGAGTGCACCTCCCAACTTGTGTGGAACCTCTCATGCTATTGTGGGACTTATGGCCAATGTGGGTGGATTTCTGGCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp GTGGTGGACTCCTCTCCTCCCTTAGGGACTGAGGTATTGGCAACAATTTTGCCCACATCAGCAGGTTCATaGTGGATAAGCAGCAGACAG +
Preference number: 5 (lower is better)
Translates to: VVDSSPPLGTEVLATILPTSAGS*WISSRQ
Trigger: CTGTCTGCTGCTTATCCACAATGAACCTGCTGATGT...GGGCAAAATTGTTGCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp CACAGGCCATTAATACTCACTAGGAGATCAGGACCTAGGAGAAGAAGAAGGGTATTTGATGAGCCCTTTTaGCCCTTGGAGGGGGCAGGG +
Preference number: 5 (lower is better)
Translates to: HRPLILTRRSGPRRRRRVFDEPF*PLEGAG
Trigger: CCCTGCCCCCTCCAAGGGCAAAAAGGGCTCATCAAA...TACCCTTCTTCTTCTCCTAGGTCCTGATCTCCTAGTGAGTATTAATGGCCTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGAGGAGGTGCACTCTCATaGGCTATGACTCCAAACAAG +
Preference number: 5 (lower is better)
Translates to: SLATGNLQHHGGSERQWRGGALS*AMTPNK
Trigger: CTTGTTTGGAGTCATAGCCAATGAGAGTGCACCTCC...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp TCATTAGCCACTGGTAACTTGCAGCACCATGGAGGTTCAGAGAGACAGTGGAGAACATCAGCAGGTTCATaGTGGATAAGCAGCAGACAG +
Preference number: 5 (lower is better)
Translates to: SLATGNLQHHGGSERQWRTSAGS*WISSRQ
Trigger: CTGTCTGCTGCTTATCCACAATGAACCTGCTGATGT...TCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGGGTGCTCTCCTCCTTaGATGAGCCCTTTTTGCCCT +
Preference number: 5 (lower is better)
Translates to: TSRFALYILPFCPRVFMRGCSPP*MSPFCP
Trigger: AGGGCAAAAAGGGCTCATCAAAGGAGGAGAGCACCC...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS GCA 90 bp CATAAGTCCCACAATAGCATGAGAGGTTCCACACAAGTTGGGAGGTaGACTCTCATTGGCTATGACTCCAAACAAGGCAATGGGACCATA +
Preference number: 5 (lower is better)
Translates to: HKSHNSMRGSTQVGR*TLIGYDSKQGNGTI
Trigger: TATGGTCCCATTGCCTTGTTTGGAGTCATAGCCAATGAGAGTGCACCTCCCAACTTGTGTGGAACCTCTCATGCTATTGTGGGACTTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGAGGTTCCACACAAGTaGGGAGGTGCACTCTCATTG +
Preference number: 5 (lower is better)
Translates to: TSRFALYILPFCPRVFMREVPHK*GGALSL
Trigger: CAATGAGAGTGCACCTCCCAACTTGTGTGGAACCTC...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp ACAAGTCGGTTTGCCCTCTATATTCTTCCCTTTTGTCCCAGGGTATTCATGAGAGATACTCGGCCCATCTaGGTGCGGATATTTCGAAGC +
Preference number: 5 (lower is better)
Translates to: TSRFALYILPFCPRVFMRDTRPI*VRIFRS
Trigger: GCTTCGAAATATCCGCACCAAGATGGGCCGAGTATC...TCTCATGAATACCCTGGGACAAAAGGGAAGAATATAGAGGGCAAACCGACTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 90 bp CATGAGAGGTTCCACACAAGTTGGGAGGTGCACTCTCATTGGCTATaGCTCCAAACAAGGCAATGGGACCATAAGAAGAGAAACCAAACA +
Preference number: 5 (lower is better)
Translates to: HERFHTSWEVHSHWL*LQTRQWDHKKRNQT
Trigger: TGTTTGGTTTCTCTTCTTATGGTCCCATTGCCTTGTTTGGAGTCATAGCCAATGAGAGTGCACCTCCCAACTTGTGTGGAACCTCTCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS-3UTR CAA 90 bp GAACCAAACATCATCATTTTAAATAGAGCATGGGATGGGAGTCGGGACCTCATTACATCAGCAGGTTCATaGTGGATAAGCAGCAGACAG +
Preference number: 5 (lower is better)
Translates to: EPNIIILNRAWDGSRDLITSAGS*WISSRQ
Trigger: CTGTCTGCTGCTTATCCACAATGAACCTGCTGATGT...AATGAGGTCCCGACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165839.3
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CAA 90 bp GCCCTGCAGCGAAGGGGAGCAGGGAGCAGGACACCCAAATCGTCCTaGTCCAGAGCGATCTCATCCACCAAGGAGGGCATGACAAAGGAG +
Preference number: 6 (lower is better)
Translates to: ALQRRGAGSRTPKSS*SRAISSTKEGMTKE
Trigger: CTCCTTTGTCATGCCCTCCTTGGTGGATGAGATCGCTCTGGACAAGGACGATTTGGGTGTCCTGCTCCCTGCTCCCCTTCGCTGCAGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215001.2
CDS GCA 72 bp CAGAACCCCGCTCACAAACTTGCTGATGGCGTAGGCTaGCGACTGGCTGCTTGTGATGAGCCCTGCAGCGAA +
Preference number: 6 (lower is better)
Translates to: QNPAHKLADGVG*RLAACDEPCSE
Trigger: TTCGCTGCAGGGCTCATCACAAGCAGCCAGTCGGCAGCCTACGCCATCAGCAAGTTTGTGAGCGGGGTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215001.2
CDS CAA 72 bp CGAAGGGGAGCAGGGAGCAGGACACCCAAATCGTCCTaGTCCAGAGCGATCTCATCCACCAAGGAGGGCATG +
Preference number: 6 (lower is better)
Translates to: RRGAGSRTPKSS*SRAISSTKEGM
Trigger: CATGCCCTCCTTGGTGGATGAGATCGCTCTGGACAAGGACGATTTGGGTGTCCTGCTCCCTGCTCCCCTTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215001.2
CDS CAA 90 bp AGAGCAGCAAAGGCTGACACTGTGGAGCTCCATGAGAAGACTACGTaGACCAGACCAACCAGGAGCAGCCCAGAGGAGAAGAGCCAGCGG +
Preference number: 6 (lower is better)
Translates to: RAAKADTVELHEKTT*TRPTRSSPEEKSQR
Trigger: CCGCTGGCTCTTCTCCTCTGGGCTGCTCCTGGTTGGTCTGGTCAACGTAGTCTTCTCATGGAGCTCCACAGTGTCAGCCTTTGCTGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 72 bp CCCAGAGGAGAAGAGCCAGCGGGCGCTCATCTGATCTaGCAGAACCCCGCTCACAAACTTGCTGATGGCGTA +
Preference number: 6 (lower is better)
Translates to: PRGEEPAGAHLI*QNPAHKLADGV
Trigger: TACGCCATCAGCAAGTTTGTGAGCGGGGTTCTGTCAGATCAGATGAGCGCCCGCTGGCTCTTCTCCTCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215001.2
ENSMUST00000215121.2
ENSMUST00000215420.2
CDS TCA 72 bp AGCAGCCCAGAGGAGAAGAGCCAGCGGGCGCTCATCTaGTCTGACAGAACCCCGCTCACAAACTTGCTGATG +
Preference number: 6 (lower is better)
Translates to: SSPEEKSQRALI*SDRTPLTNLLM
Trigger: CATCAGCAAGTTTGTGAGCGGGGTTCTGTCAGATCAGATGAGCGCCCGCTGGCTCTTCTCCTCTGGGCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215001.2
ENSMUST00000215121.2
ENSMUST00000215420.2
CDS TCA 72 bp GCTGCCATCCCAGCCATCATGAGTAGCAATAGGCCGTaGCGAGGGTTCCCATACAGAGACAGCCCTGCCTTC +
Preference number: 6 (lower is better)
Translates to: AAIPAIMSSNRP*RGFPYRDSPAF
Trigger: GAAGGCAGGGCTGTCTCTGTATGGGAACCCTCGTCACGGCCTATTGCTACTCATGATGGCTGGGATGGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS GCA 72 bp CAGAACCCCGCTCACAAACTTGCTGATGGCGTAGGCTaGCGACTGGCTGCTTGTGATGAGCCCCAAATCGTC +
Preference number: 6 (lower is better)
Translates to: QNPAHKLADGVG*RLAACDEPQIV
Trigger: GACGATTTGGGGCTCATCACAAGCAGCCAGTCGGCAGCCTACGCCATCAGCAAGTTTGTGAGCGGGGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215121.2
ENSMUST00000215420.2
CDS CCA 72 bp GAGGGTTCCCATACAGAGACAGCCCTGCCTTCGCCATaGCCCTGTCTGACAGGTAACCAGCTGCAATGCTTC +
Preference number: 6 (lower is better)
Translates to: EGSHTETALPSP*PCLTGNQLQCF
Trigger: GAAGCATTGCAGCTGGTTACCTGTCAGACAGGGCCATGGCGAAGGCAGGGCTGTCTCTGTATGGGAACCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CAA 72 bp GCCGACTGGCTGCTTGTGATGAGCCCCAAATCGTCCTaGTCCAGAGCGATCTCATCCACCAAGGAGGGCATG +
Preference number: 6 (lower is better)
Translates to: ADWLLVMSPKSS*SRAISSTKEGM
Trigger: CATGCCCTCCTTGGTGGATGAGATCGCTCTGGACAAGGACGATTTGGGGCTCATCACAAGCAGCCAGTCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215121.2
ENSMUST00000215420.2
CDS GCA 72 bp TGTGCTGCGCCAGCTGTAGCTCTGGGCGAGGATCGTTaGCAAGATAGGTCCCAAACTTCCAGCCAGGTTCAT +
Preference number: 6 (lower is better)
Translates to: CAAPAVALGEDR*QDRSQTSSQVH
Trigger: ATGAACCTGGCTGGAAGTTTGGGACCTATCTTGGCAACGATCCTCGCCCAGAGCTACAGCTGGCGCAGCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS GCA 72 bp CCCAGAGATAGGGGGACAGCAGCAGATCCTGTAGGGTaGTCTCCTCCTTTGATGAGCCCTTTTTGCCCTTGG +
Preference number: 6 (lower is better)
Translates to: PRDRGTAADPVG*SPPLMSPFCPW
Trigger: CCAAGGGCAAAAAGGGCTCATCAAAGGAGGAGAGCACCCTACAGGATCTGCTGCTGTCCCCCTATCTCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CCA 72 bp GGGTGCTCTCCTCCTTTGATGAGCCCTTTTTGCCCTTaGAGGGGGCAGGGTCCAGATTTCGGAGTCCAACAT +
Preference number: 6 (lower is better)
Translates to: GCSPPLMSPFCP*RGQGPDFGVQH
Trigger: ATGTTGGACTCCGAAATCTGGACCCTGCCCCCTCCAAGGGCAAAAAGGGCTCATCAAAGGAGGAGAGCACCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CCA 72 bp AGGGCGGACTGCCCTCGCTCCTGGATAAGGAAGAACTaGCCCCAGTCTGTACAGCAAGTCTTTACTCCGAAG +
Preference number: 6 (lower is better)
Translates to: RADCPRSWIRKN*PQSVQQVFTPK
Trigger: CTTCGGAGTAAAGACTTGCTGTACAGACTGGGGCCAGTTCTTCCTTATCCAGGAGCGAGGGCAGTCCGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CAA 72 bp AGGGTGCTCTCCTCCTTTGATGAGCCCTTTTTGCCCTaGGAGGGGGCAGGGTCCAGATTTCGGAGTCCAACA +
Preference number: 6 (lower is better)
Translates to: RVLSSFDEPFLP*EGAGSRFRSPT
Trigger: TGTTGGACTCCGAAATCTGGACCCTGCCCCCTCCAAGGGCAAAAAGGGCTCATCAAAGGAGGAGAGCACCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 72 bp AGGCTGACACTGTGGAGCTCCATGAGAAGACTACGTTaGCCAGACCAACCAGGAGCAGCCCAGAGGAGAAGA +
Preference number: 6 (lower is better)
Translates to: RLTLWSSMRRLR*PDQPGAAQRRR
Trigger: TCTTCTCCTCTGGGCTGCTCCTGGTTGGTCTGGTCAACGTAGTCTTCTCATGGAGCTCCACAGTGTCAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CAA 72 bp AAGGCTGACACTGTGGAGCTCCATGAGAAGACTACGTaGACCAGACCAACCAGGAGCAGCCCAGAGGAGAAG +
Preference number: 6 (lower is better)
Translates to: KADTVELHEKTT*TRPTRSSPEEK
Trigger: CTTCTCCTCTGGGCTGCTCCTGGTTGGTCTGGTCAACGTAGTCTTCTCATGGAGCTCCACAGTGTCAGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 72 bp AGTACAGGCTGTAGCCTCCAAACATGGCCGCAAATATaGCAGTGCGATAGTAGCCGTAGCCTTGGGCTGCCA +
Preference number: 6 (lower is better)
Translates to: STGCSLQTWPQI*QCDSSRSLGLP
Trigger: TGGCAGCCCAAGGCTACGGCTACTATCGCACTGTCATATTTGCGGCCATGTTTGGAGGCTACAGCCTGTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215001.2
ENSMUST00000215121.2
ENSMUST00000215420.2
CDS TCA 72 bp GATAGGTCCCAAACTTCCAGCCAGGTTCATGCTGGTTaGCAACACAGCCCACCAAGTGCCAAACTGGGATGG +
Preference number: 6 (lower is better)
Translates to: DRSQTSSQVHAG*QHSPPSAKLGW
Trigger: CCATCCCAGTTTGGCACTTGGTGGGCTGTGTTGTCAACCAGCATGAACCTGGCTGGAAGTTTGGGACCTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS GCA 72 bp CCAGGTTCATGCTGGTTGACAACACAGCCCACCAAGTaGCAAACTGGGATGGCTCAAACCACTTCCTCAGGA +
Preference number: 6 (lower is better)
Translates to: PGSCWLTTQPTK*QTGMAQTTSSG
Trigger: TCCTGAGGAAGTGGTTTGAGCCATCCCAGTTTGGCACTTGGTGGGCTGTGTTGTCAACCAGCATGAACCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS GCA 72 bp GAAGAAGACAACTGTGCTGGCTCCACAAACCACTTCTaGCACCCAGAAGGCTGTGCTCCAGCTATAGTGCTT +
Preference number: 6 (lower is better)
Translates to: EEDNCAGSTNHF*HPEGCAPAIVL
Trigger: AAGCACTATAGCTGGAGCACAGCCTTCTGGGTGGCAGAAGTGGTTTGTGGAGCCAGCACAGTTGTCTTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CCA 72 bp ATGCTGGTTGACAACACAGCCCACCAAGTGCCAAACTaGGATGGCTCAAACCACTTCCTCAGGATCTTCCCA +
Preference number: 6 (lower is better)
Translates to: MLVDNTAHQVPN*DGSNHFLRIFP
Trigger: TGGGAAGATCCTGAGGAAGTGGTTTGAGCCATCCCAGTTTGGCACTTGGTGGGCTGTGTTGTCAACCAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CCA 72 bp TGCGGATATTTCGAAGCAAGAAGAAGACAACTGTGCTaGCTCCACAAACCACTTCTGCCACCCAGAAGGCTG +
Preference number: 6 (lower is better)
Translates to: CGYFEARRRQLC*LHKPLLPPRRL
Trigger: CAGCCTTCTGGGTGGCAGAAGTGGTTTGTGGAGCCAGCACAGTTGTCTTCTTCTTGCTTCGAAATATCCGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 72 bp AATCCACCCACATTGGCCATAAGTCCCACAATAGCATaGGAGGTTCCACACAAGTTGGGAGGTGCACTCTCA +
Preference number: 6 (lower is better)
Translates to: NPPTLAISPTIA*EVPHKLGGALS
Trigger: TGAGAGTGCACCTCCCAACTTGTGTGGAACCTCTCATGCTATTGTGGGACTTATGGCCAATGTGGGTGGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CAA 72 bp GGGTCCAGATTTCGGAGTCCAACATCAGCAGGTTCATaGTGGATAAGCAGCAGACAGAAGAAGGAGACAACC +
Preference number: 6 (lower is better)
Translates to: GSRFRSPTSAGS*WISSRQKKETT
Trigger: GGTTGTCTCCTTCTTCTGTCTGCTGCTTATCCACAATGAACCTGCTGATGTTGGACTCCGAAATCTGGACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS TCA 72 bp TTCCACACAAGTTGGGAGGTGCACTCTCATTGGCTATaGCTCCAAACAAGGCAATGGGACCATAAGAAGAGA +
Preference number: 6 (lower is better)
Translates to: FHTSWEVHSHWL*LQTRQWDHKKR
Trigger: TCTCTTCTTATGGTCCCATTGCCTTGTTTGGAGTCATAGCCAATGAGAGTGCACCTCCCAACTTGTGTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS GCA 72 bp CACAATAGCATGAGAGGTTCCACACAAGTTGGGAGGTaGACTCTCATTGGCTATGACTCCAAACAAGGCAAT +
Preference number: 6 (lower is better)
Translates to: HNSMRGSTQVGR*TLIGYDSKQGN
Trigger: ATTGCCTTGTTTGGAGTCATAGCCAATGAGAGTGCACCTCCCAACTTGTGTGGAACCTCTCATGCTATTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2
CDS CCA 72 bp TCCAGATTTCGGAGTCCAACATCAGCAGGTTCATTGTaGATAAGCAGCAGACAGAAGAAGGAGACAACCACA +
Preference number: 6 (lower is better)
Translates to: SRFRSPTSAGSL*ISSRQKKETTT
Trigger: TGTGGTTGTCTCCTTCTTCTGTCTGCTGCTTATCCACAATGAACCTGCTGATGTTGGACTCCGAAATCTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000165839.3
ENSMUST00000213268.2
ENSMUST00000213388.2
ENSMUST00000215420.2