RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLC36A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020264

Ensembl transcript IDs: ENSMUST00000039305.6

Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATCTATCTACACCTTGTATGCGGTGTAGATGGCCCCCATCTCCTTTaGGCGCGCGCGCACACACACACGGTACTGGGGATATGCTACACC +
Preference number: 1 (lower is better)
Translates to: IYLHLVCGVDGPHLL*ARAHTHTVLGICYT
Trigger: GGTGTAGCATATCCCCAGTACCGTGTGTGTGTGCGCGCGCGCGCAAAGGAGATGGGGGCCATCTACACCGCATACAAGGTGTAGATAGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR GCA 90 bp GCCTCAGCGGGCAGAGACTACCTTCTGCCAAAAGCTGGCTATTGCTaGCGCCTAGTGGTTGCTTTTTGCATAGCTCCACTCAAGGCAGGA +
Preference number: 1 (lower is better)
Translates to: ASAGRDYLLPKAGYC*RLVVAFCIAPLKAG
Trigger: TCCTGCCTTGAGTGGAGCTATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTTGGCAGAAGGTAGTCTCTGCCCGCTGAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR GCA 90 bp AAAGCCTCAGCGGGCAGAGACTACCTTCTGCCAAAAGCTGGCTATTaGTGCCGCCTAGTGGTTGCTTTTTGCATAGCTCCACTCAAGGCA +
Preference number: 1 (lower is better)
Translates to: KASAGRDYLLPKAGY*CRLVVAFCIAPLKA
Trigger: TGCCTTGAGTGGAGCTATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTTGGCAGAAGGTAGTCTCTGCCCGCTGAGGCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR CCA 90 bp TTTGTTTTTAATGACCATCTATCTACACCTTGTATGCGGTGTAGATaGCCCCCATCTCCTTTGCGCGCGCGCGCACACACACACGGTACT +
Preference number: 1 (lower is better)
Translates to: FVFNDHLSTPCMRCR*PPSPLRARAHTHGT
Trigger: AGTACCGTGTGTGTGTGCGCGCGCGCGCAAAGGAGATGGGGGCCATCTACACCGCATACAAGGTGTAGATAGATGGTCATTAAAAACAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR GCA 90 bp AGACTACCTTCTGCCAAAAGCTGGCTATTGCTGCCGCCTAGTGGTTaGTTTTTGCATAGCTCCACTCAAGGCAGGAAATTAGCAGATAAA +
Preference number: 1 (lower is better)
Translates to: RLPSAKSWLLLPPSG*FLHSSTQGRKLADK
Trigger: TTTATCTGCTAATTTCCTGCCTTGAGTGGAGCTATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTTGGCAGAAGGTAGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR GCA 90 bp CACCTTTACCCAAACTATTATATAAGAGCCCTGTATTATGCTTGGTaGCCGACAGGTAACAGAAGATGTTCATTGCAAGAATTCAGAAGT +
Preference number: 1 (lower is better)
Translates to: HLYPNYYIRALYYAW*PTGNRRCSLQEFRS
Trigger: ACTTCTGAATTCTTGCAATGAACATCTTCTGTTACCTGTCGGGCACCAAGCATAATACAGGGCTCTTATATAATAGTTTGGGTAAAGGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR CAA 90 bp CATCTATCTACACCTTGTATGCGGTGTAGATGGCCCCCATCTCCTTaGCGCGCGCGCGCACACACACACGGTACTGGGGATATGCTACAC +
Preference number: 2 (lower is better)
Translates to: HLSTPCMRCRWPPSP*RARAHTHGTGDMLH
Trigger: GTGTAGCATATCCCCAGTACCGTGTGTGTGTGCGCGCGCGCGCAAAGGAGATGGGGGCCATCTACACCGCATACAAGGTGTAGATAGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR CAA 90 bp CAAAGCCTCAGCGGGCAGAGACTACCTTCTGCCAAAAGCTGGCTATaGCTGCCGCCTAGTGGTTGCTTTTTGCATAGCTCCACTCAAGGC +
Preference number: 2 (lower is better)
Translates to: QSLSGQRLPSAKSWL*LPPSGCFLHSSTQG
Trigger: GCCTTGAGTGGAGCTATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTTGGCAGAAGGTAGTCTCTGCCCGCTGAGGCTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR-3UTR GCA 90 bp GTGAGGTCTCCACAGTGTGGAAAACTAGAGAACGACCAACATTTCTTTTGTTTTGGCCCCCATCTCCTTTaGGCGCGCGCGCACACACAC +
Preference number: 2 (lower is better)
Translates to: VRSPQCGKLENDQHFFCFGPHLL*ARAHTH
Trigger: GTGTGTGTGCGCGCGCGCGCAAAGGAGATGGGGGCC...AAAACAAAAGAAATGTTGGTCGTTCTCTAGTTTTCCACACTGTGGAGACCTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR-3UTR GCA 90 bp ACATTTTATCTGAGCATTGTGACTGGCCCTGGCCCCCTCCATCTTGATGCTGCCGCAGAGACTACCTTCTaGCAAAAGCTGGCTATTGCT +
Preference number: 2 (lower is better)
Translates to: TFYLSIVTGPGPLHLDAAAETTF*QKLAIA
Trigger: AGCAATAGCCAGCTTTTGGCAGAAGGTAGTCTCTGC...GGCAGCATCAAGATGGAGGGGGCCAGGGCCAGTCACAATGCTCAGATAAAATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR-3UTR CCA 90 bp TGTCTCTGTCTGCTGCCCCTGGCCCATAGGCATGACCCTATGTTTTTCTTGTTCATGACAAAAACAAGATaGCGGTTTCCACAGGTGAGG +
Preference number: 2 (lower is better)
Translates to: CLCLLPLAHRHDPMFFLFMTKTR*RFPQVR
Trigger: CCTCACCTGTGGAAACCGCCATCTTGTTTTTGTCAT...GAACAAGAAAAACATAGGGTCATGCCTATGGGCCAGGGGCAGCAGACAGAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR TCA 72 bp TCTGAGCATTGTGACTGGCCCTGGCCCCCTCCATCTTaGTGCTGCCTTGAGCACAGTGTTCCCCATCATGGT +
Preference number: 3 (lower is better)
Translates to: SEHCDWPWPPPS*CCLEHSVPHHG
Trigger: ACCATGATGGGGAACACTGTGCTCAAGGCAGCATCAAGATGGAGGGGGCCAGGGCCAGTCACAATGCTCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR CCA 72 bp AGCCTCAGCGGGCAGAGACTACCTTCTGCCAAAAGCTaGCTATTGCTGCCGCCTAGTGGTTGCTTTTTGCAT +
Preference number: 3 (lower is better)
Translates to: SLSGQRLPSAKS*LLLPPSGCFLH
Trigger: ATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTTGGCAGAAGGTAGTCTCTGCCCGCTGAGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR GCA 72 bp GGCAGAGACTACCTTCTGCCAAAAGCTGGCTATTGCTaGCGCCTAGTGGTTGCTTTTTGCATAGCTCCACTC +
Preference number: 3 (lower is better)
Translates to: GRDYLLPKAGYC*RLVVAFCIAPL
Trigger: GAGTGGAGCTATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTTGGCAGAAGGTAGTCTCTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR CCA 72 bp AAGATGGCGGTTTCCACAGGTGAGGTCTCCACAGTGTaGAAAACTAGAGAACGACCAACATTTCTTTTGTTT +
Preference number: 3 (lower is better)
Translates to: KMAVSTGEVSTV*KTRERPTFLLF
Trigger: AAACAAAAGAAATGTTGGTCGTTCTCTAGTTTTCCACACTGTGGAGACCTCACCTGTGGAAACCGCCATCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR CCA 72 bp GTCAAGACTCAGGAGATGACCCGTAGACTCTACTGTTaGGTACACAAAGCTACAATGTTATATAAGCTCTTG +
Preference number: 3 (lower is better)
Translates to: VKTQEMTRRLYC*VHKATMLYKLL
Trigger: CAAGAGCTTATATAACATTGTAGCTTTGTGTACCCAACAGTAGAGTCTACGGGTCATCTCCTGAGTCTTGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR CCA 72 bp TACCCAAACTATTATATAAGAGCCCTGTATTATGCTTaGTGCCCGACAGGTAACAGAAGATGTTCATTGCAA +
Preference number: 3 (lower is better)
Translates to: YPNYYIRALYYA*CPTGNRRCSLQ
Trigger: TTGCAATGAACATCTTCTGTTACCTGTCGGGCACCAAGCATAATACAGGGCTCTTATATAATAGTTTGGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR TCA 72 bp ATGACCCTATGTTTTTCTTGTTCACTGCTGGATTTCTaGGTTGGGCTAAGACTTAGTGGTTTAGAAAGTTCA +
Preference number: 3 (lower is better)
Translates to: MTLCFSCSLLDF*VGLRLSGLESS
Trigger: TGAACTTTCTAAACCACTAAGTCTTAGCCCAACTCAGAAATCCAGCAGTGAACAAGAAAAACATAGGGTCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR GCA 90 bp TGCGGTGTAGATGGCCCCCATCTCCTTTGCGCGCGCGCGCACACACACACGGTAGTAGGTCTTCCAGCTTaGTACCAGTGGCAACTGGCT +
Preference number: 4 (lower is better)
Translates to: CGVDGPHLLCARAHTHTVVGLPA*YQWQLA
Trigger: AGCCAGTTGCCACTGGTAGCAAGCTGGAAGACCTAC...TACCGTGTGTGTGTGCGCGCGCGCGCAAAGGAGATGGGGGCCATCTACACCGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR GCA 90 bp TGCGGTGTAGATGGCCCCCATCTCCTTTGCGCGCGCGCGCACACACACACGGTACATCTGACTAGGATGTaGATACAGTGGCAGGCGATG +
Preference number: 4 (lower is better)
Translates to: CGVDGPHLLCARAHTHTVHLTRM*IQWQAM
Trigger: CATCGCCTGCCACTGTATGCACATCCTAGTCAGATG...TACCGTGTGTGTGTGCGCGCGCGCGCAAAGGAGATGGGGGCCATCTACACCGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp TGCGGTGTAGATGGCCCCCATCTCCTTTGCGCGCGCGCGCACACACACACGGTATCCTGGATGATGTACTaGGCAATGATGACCAGGCTG +
Preference number: 4 (lower is better)
Translates to: CGVDGPHLLCARAHTHTVSWMMY*AMMTRL
Trigger: CAGCCTGGTCATCATTGCCCAGTACATCATCCAGGA...TACCGTGTGTGTGTGCGCGCGCGCGCAAAGGAGATGGGGGCCATCTACACCGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR TCA 90 bp TGTCTCTGTCTGCTGCCCCTGGCCCATAGGCATGACCCTATGTTTTTCTTGTTCTGGCCAGCATGCATGTaGGGCAGACCAGGGCAAGCC +
Preference number: 4 (lower is better)
Translates to: CLCLLPLAHRHDPMFFLFWPACM*GRPGQA
Trigger: GGCTTGCCCTGGTCTGCCTCACATGCATGCTGGCCA...GAACAAGAAAAACATAGGGTCATGCCTATGGGCCAGGGGCAGCAGACAGAGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR GCA 90 bp TGTCTCTGTCTGCTGCCCCTGGCCCATAGGCATGACCCTATGTTTTTCTTGTTCAGAGGGGTGGCTACCTaGGGACTCCTGGCACTCTTG +
Preference number: 4 (lower is better)
Translates to: CLCLLPLAHRHDPMFFLFRGVAT*GLLALL
Trigger: CAAGAGTGCCAGGAGTCCGCAGGTAGCCACCCCTCT...GAACAAGAAAAACATAGGGTCATGCCTATGGGCCAGGGGCAGCAGACAGAGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR GCA 90 bp GCCAAAAGCTGGCTATTGCTGCCGCCTAGTGGTTGCTTTTTGCATAGCTCCACTCAGTGGGCGTGGTTTTaGAGCCAGGCATTGGGACTG +
Preference number: 4 (lower is better)
Translates to: AKSWLLLPPSGCFLHSSTQWAWF*SQALGL
Trigger: CAGTCCCAATGCCTGGCTGCAAAACCACGCCCACTG...AGTGGAGCTATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp TGTCTCTGTCTGCTGCCCCTGGCCCATAGGCATGACCCTATGTTTTTCTTGTTCCCAGCTTGCTACCAGTaGCAACTGGCTGGCATCTGG +
Preference number: 4 (lower is better)
Translates to: CLCLLPLAHRHDPMFFLFPACYQ*QLAGIW
Trigger: CCAGATGCCAGCCAGTTGCCACTGGTAGCAAGCTGG...GAACAAGAAAAACATAGGGTCATGCCTATGGGCCAGGGGCAGCAGACAGAGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR TCA 90 bp ACATTTTATCTGAGCATTGTGACTGGCCCTGGCCCCCTCCATCTTGATGCTGCCAGCGCTGGGCACATCTaGCTAGGATGTGCATACAGT +
Preference number: 4 (lower is better)
Translates to: TFYLSIVTGPGPLHLDAASAGHI*LGCAYS
Trigger: ACTGTATGCACATCCTAGTCAGATGTGCCCAGCGCT...GGCAGCATCAAGATGGAGGGGGCCAGGGCCAGTCACAATGCTCAGATAAAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR TCA 90 bp GCCAAAAGCTGGCTATTGCTGCCGCCTAGTGGTTGCTTTTTGCATAGCTCCACTGGCTTGTTCAGTCTGTaGCAGAAGCGCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: AKSWLLLPPSGCFLHSSTGLFSL*QKRWAH
Trigger: ATGTGCCCAGCGCTTCTGTCACAGACTGAACAAGCC...AGTGGAGCTATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp ACATTTTATCTGAGCATTGTGACTGGCCCTGGCCCCCTCCATCTTGATGCTGCCAGGAGCTTGACTGATTaGTACAGCCAGCAGTTGGGC +
Preference number: 4 (lower is better)
Translates to: TFYLSIVTGPGPLHLDAARSLTD*YSQQLG
Trigger: GCCCAACTGCTGGCTGTACCAATCAGTCAAGCTCCT...GGCAGCATCAAGATGGAGGGGGCCAGGGCCAGTCACAATGCTCAGATAAAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR TCA 90 bp ACATTTTATCTGAGCATTGTGACTGGCCCTGGCCCCCTCCATCTTGATGCTGCCTTGCCTTTGACCAGATaGACCAATGTCTGGAACCCG +
Preference number: 4 (lower is better)
Translates to: TFYLSIVTGPGPLHLDAALPLTR*TNVWNP
Trigger: CGGGTTCCAGACATTGGTTCATCTGGTCAAAGGCAA...GGCAGCATCAAGATGGAGGGGGCCAGGGCCAGTCACAATGCTCAGATAAAATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp GCCAAAAGCTGGCTATTGCTGCCGCCTAGTGGTTGCTTTTTGCATAGCTCCACTGCTACCAGTGGCAACTaGCTGGCATCTGGAATTTCC +
Preference number: 4 (lower is better)
Translates to: AKSWLLLPPSGCFLHSSTATSGN*LASGIS
Trigger: GGAAATTCCAGATGCCAGCCAGTTGCCACTGGTAGC...AGTGGAGCTATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR TCA 90 bp TGCCTTGAGCACAGTGTTCCCCATCATGGTCAGGAAAAGGAAATAACCAAAGCCCAGCGTTTTGACACCTaGGAGACAGCAAGGGGGATG +
Preference number: 4 (lower is better)
Translates to: CLEHSVPHHGQEKEITKAQRFDT*ETARGM
Trigger: CATCCCCCTTGCTGTCTCTCAGGTGTCAAAACGCTG...GGCTTTGGTTATTTCCTTTTCCTGACCATGATGGGGAACACTGTGCTCAAGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp TGCCTTGAGCACAGTGTTCCCCATCATGGTCAGGAAAAGGAAATAACCAAAGCCGGCTCTGCAGCTTCTTaGCACTCTCAGGAAGGTCCA +
Preference number: 4 (lower is better)
Translates to: CLEHSVPHHGQEKEITKAGSAAS*HSQEGP
Trigger: TGGACCTTCCTGAGAGTGCCAAGAAGCTGCAGAGCC...GGCTTTGGTTATTTCCTTTTCCTGACCATGATGGGGAACACTGTGCTCAAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR TCA 90 bp GCCAAAAGCTGGCTATTGCTGCCGCCTAGTGGTTGCTTTTTGCATAGCTCCACTTGCCCATGTTGCCTTTaGCCAGATGAACCAATGTCT +
Preference number: 4 (lower is better)
Translates to: AKSWLLLPPSGCFLHSSTCPCCL*PDEPMS
Trigger: AGACATTGGTTCATCTGGTCAAAGGCAACATGGGCA...AGTGGAGCTATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp GCCAAAAGCTGGCTATTGCTGCCGCCTAGTGGTTGCTTTTTGCATAGCTCCACTACCCGGTTATGCCCTTaGTCTTCTTTGATGACTCTG +
Preference number: 4 (lower is better)
Translates to: AKSWLLLPPSGCFLHSSTTRLCP*SSLMTL
Trigger: CAGAGTCATCAAAGAAGACCAAGGGCATAACCGGGT...AGTGGAGCTATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp TGCCTTGAGCACAGTGTTCCCCATCATGGTCAGGAAAAGGAAATAACCAAAGCCAGGATGTGCATACAGTaGCAGGCGATGAGGCCCATT +
Preference number: 4 (lower is better)
Translates to: CLEHSVPHHGQEKEITKARMCIQ*QAMRPI
Trigger: AATGGGCCTCATCGCCTGCCACTGTATGCACATCCT...GGCTTTGGTTATTTCCTTTTCCTGACCATGATGGGGAACACTGTGCTCAAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR CAA 72 bp CTGCCCCTGGCCCATAGGCATGACCCTATGTTTTTCTaGTTCACTGCTGGATTTCTGAGTTGGGCTAAGACT +
Preference number: 4 (lower is better)
Translates to: LPLAHRHDPMFF*FTAGFLSWAKT
Trigger: AGTCTTAGCCCAACTCAGAAATCCAGCAGTGAACAAGAAAAACATAGGGTCATGCCTATGGGCCAGGGGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp GTGAGGTCTCCACAGTGTGGAAAACTAGAGAACGACCAACATTTCTTTTGTTTTTCCCCAAAGACAGAATaGTTGGGAAGCCGCGGGCAT +
Preference number: 4 (lower is better)
Translates to: VRSPQCGKLENDQHFFCFSPKTE*LGSRGH
Trigger: ATGCCCGCGGCTTCCCAACCATTCTGTCTTTGGGGA...AAAACAAAAGAAATGTTGGTCGTTCTCTAGTTTTCCACACTGTGGAGACCTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR CAA 72 bp AAAAGCTGGCTATTGCTGCCGCCTAGTGGTTGCTTTTaGCATAGCTCCACTCAAGGCAGGAAATTAGCAGAT +
Preference number: 4 (lower is better)
Translates to: KSWLLLPPSGCF*HSSTQGRKLAD
Trigger: ATCTGCTAATTTCCTGCCTTGAGTGGAGCTATGCAAAAAGCAACCACTAGGCGGCAGCAATAGCCAGCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR TCA 90 bp TTTCTTTTGTTTTTAATGACCATCTATCTACACCTTGTATGCGGTGTAGATGGCTACAGTGGCAGGCGATaGGGCCCATTACCAGCAAGC +
Preference number: 4 (lower is better)
Translates to: FLLFLMTIYLHLVCGVDGYSGRR*GPLPAS
Trigger: GCTTGCTGGTAATGGGCCTCATCGCCTGCCACTGTA...GCCATCTACACCGCATACAAGGTGTAGATAGATGGTCATTAAAAACAAAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp TTTCTTTTGTTTTTAATGACCATCTATCTACACCTTGTATGCGGTGTAGATGGCGCTGGACTGGGATCCTaGCTCTGCAGCTTCTTGGCA +
Preference number: 4 (lower is better)
Translates to: FLLFLMTIYLHLVCGVDGAGLGS*LCSFLA
Trigger: TGCCAAGAAGCTGCAGAGCCAGGATCCCAGTCCAGC...GCCATCTACACCGCATACAAGGTGTAGATAGATGGTCATTAAAAACAAAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp TTTCTTTTGTTTTTAATGACCATCTATCTACACCTTGTATGCGGTGTAGATGGCTCCCATTCGCTGGACTaGGATCCTGGCTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: FLLFLMTIYLHLVCGVDGSHSLD*DPGSAA
Trigger: AGCTGCAGAGCCAGGATCCCAGTCCAGCGAATGGGA...GCCATCTACACCGCATACAAGGTGTAGATAGATGGTCATTAAAAACAAAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp ATTTCTTTTGTTTTTAATGACCATCTATCTACACCTTGTATGCGGTGTAGATGGCTCCCCCAGTGGGCGTaGTTTTGCAGCCAGGCATTG +
Preference number: 4 (lower is better)
Translates to: ISFVFNDHLSTPCMRCRWLPQWA*FCSQAL
Trigger: CAATGCCTGGCTGCAAAACCACGCCCACTGGGGGAG...CCATCTACACCGCATACAAGGTGTAGATAGATGGTCATTAAAAACAAAAGAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp GTGAGGTCTCCACAGTGTGGAAAACTAGAGAACGACCAACATTTCTTTTGTTTTCAGCAGAAACCCAGCTaGGTGACGATGAGGAAGAAG +
Preference number: 4 (lower is better)
Translates to: VRSPQCGKLENDQHFFCFQQKPS*VTMRKK
Trigger: CTTCTTCCTCATCGTCACCCAGCTGGGTTTCTGCTG...AAAACAAAAGAAATGTTGGTCGTTCTCTAGTTTTCCACACTGTGGAGACCTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR GCA 90 bp TTTCTTTTGTTTTTAATGACCATCTATCTACACCTTGTATGCGGTGTAGATGGCCTGGGATCCTGGCTCTaGAGCTTCTTGGCACTCTCA +
Preference number: 4 (lower is better)
Translates to: FLLFLMTIYLHLVCGVDGLGSWL*SFLALS
Trigger: TGAGAGTGCCAAGAAGCTGCAGAGCCAGGATCCCAG...GCCATCTACACCGCATACAAGGTGTAGATAGATGGTCATTAAAAACAAAAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp TTTCTTTTGTTTTTAATGACCATCTATCTACACCTTGTATGCGGTGTAGATGGCCAAAGACAGAATGGTTaGGAAGCCGCGGGCATCCTT +
Preference number: 4 (lower is better)
Translates to: FLLFLMTIYLHLVCGVDGQRQNG*EAAGIL
Trigger: AAGGATGCCCGCGGCTTCCCAACCATTCTGTCTTTG...GCCATCTACACCGCATACAAGGTGTAGATAGATGGTCATTAAAAACAAAAGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR CAA 72 bp GCCATCATCGAATTTCCATTTGTAACACTTTTACTGTaGACCATGGCAAGTTACAAGGTCAAGACTCAGGAG +
Preference number: 4 (lower is better)
Translates to: AIIEFPFVTLLL*TMASYKVKTQE
Trigger: CTCCTGAGTCTTGACCTTGTAACTTGCCATGGTCAACAGTAAAAGTGTTACAAATGGAAATTCGATGATGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR TCA 90 bp ATTTCTTTTGTTTTTAATGACCATCTATCTACACCTTGTATGCGGTGTAGATGGATACAGGAGCTTGACTaGTTGGTACAGCCAGCAGTT +
Preference number: 4 (lower is better)
Translates to: ISFVFNDHLSTPCMRCRWIQELD*LVQPAV
Trigger: AACTGCTGGCTGTACCAATCAGTCAAGCTCCTGTAT...CCATCTACACCGCATACAAGGTGTAGATAGATGGTCATTAAAAACAAAAGAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CCA 90 bp TTTCTTTTGTTTTTAATGACCATCTATCTACACCTTGTATGCGGTGTAGATGGCCAACTGGCTGGCATCTaGAATTTCCTGGATGATGTA +
Preference number: 4 (lower is better)
Translates to: FLLFLMTIYLHLVCGVDGQLAGI*NFLDDV
Trigger: TACATCATCCAGGAAATTCCAGATGCCAGCCAGTTG...GCCATCTACACCGCATACAAGGTGTAGATAGATGGTCATTAAAAACAAAAGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
3UTR CAA 72 bp ACAGTGTGGAAAACTAGAGAACGACCAACATTTCTTTaGTTTTTAATGACCATCTATCTACACCTTGTATGC +
Preference number: 4 (lower is better)
Translates to: TVWKTRERPTFL*FLMTIYLHLVC
Trigger: GCATACAAGGTGTAGATAGATGGTCATTAAAAACAAAAGAAATGTTGGTCGTTCTCTAGTTTTCCACACTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CAA 90 bp TGCGGTGTAGATGGCCCCCATCTCCTTTGCGCGCGCGCGCACACACACACGGTATCAGGAAGGTCCAGATaGAGAGGGGTGGCTACCTGC +
Preference number: 5 (lower is better)
Translates to: CGVDGPHLLCARAHTHTVSGRSR*RGVATC
Trigger: GCAGGTAGCCACCCCTCTCAATCTGGACCTTCCTGA...TACCGTGTGTGTGTGCGCGCGCGCGCAAAGGAGATGGGGGCCATCTACACCGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CCA 90 bp GTGACGATGAGGAAGAAGCTCACGACACGCCTCCCCCAGTGGGCGTaGTTTTGCAGCCAGGCATTGGGACTGAAAGCCAGTCCGTGCATC +
Preference number: 5 (lower is better)
Translates to: VTMRKKLTTRLPQWA*FCSQALGLKASPCI
Trigger: GATGCACGGACTGGCTTTCAGTCCCAATGCCTGGCTGCAAAACCACGCCCACTGGGGGAGGCGTGTCGTGAGCTTCTTCCTCATCGTCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CAA 90 bp TGCGGTGTAGATGGCCCCCATCTCCTTTGCGCGCGCGCGCACACACACACGGTATGGTACAGCCAGCAGTaGGGCAGGTTAAGAGTGATG +
Preference number: 5 (lower is better)
Translates to: CGVDGPHLLCARAHTHTVWYSQQ*GRLRVM
Trigger: CATCACTCTTAACCTGCCCAACTGCTGGCTGTACCA...TACCGTGTGTGTGTGCGCGCGCGCGCAAAGGAGATGGGGGCCATCTACACCGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS GCA 90 bp ATGAGGAAGAAGCTCACGACACGCCTCCCCCAGTGGGCGTGGTTTTaGAGCCAGGCATTGGGACTGAAAGCCAGTCCGTGCATCACTGTG +
Preference number: 5 (lower is better)
Translates to: MRKKLTTRLPQWAWF*SQALGLKASPCITV
Trigger: CACAGTGATGCACGGACTGGCTTTCAGTCCCAATGCCTGGCTGCAAAACCACGCCCACTGGGGGAGGCGTGTCGTGAGCTTCTTCCTCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CCA 90 bp CCTTGGTCTTCTTTGATGACTCTGAAGAGCTCCCATTCGCTGGACTaGGATCCTGGCTCTGCAGCTTCTTGGCACTCTCAGGAAGGTCCA +
Preference number: 5 (lower is better)
Translates to: PWSSLMTLKSSHSLD*DPGSAASWHSQEGP
Trigger: TGGACCTTCCTGAGAGTGCCAAGAAGCTGCAGAGCCAGGATCCCAGTCCAGCGAATGGGAGCTCTTCAGAGTCATCAAAGAAGACCAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CAA 90 bp TGTCTCTGTCTGCTGCCCCTGGCCCATAGGCATGACCCTATGTTTTTCTTGTTCTGGCTCTGCAGCTTCTaGGCACTCTCAGGAAGGTCC +
Preference number: 5 (lower is better)
Translates to: CLCLLPLAHRHDPMFFLFWLCSF*ALSGRS
Trigger: GGACCTTCCTGAGAGTGCCAAGAAGCTGCAGAGCCA...GAACAAGAAAAACATAGGGTCATGCCTATGGGCCAGGGGCAGCAGACAGAGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CAA 90 bp TGTCTCTGTCTGCTGCCCCTGGCCCATAGGCATGACCCTATGTTTTTCTTGTTCCCAAAGACAGAATGGTaGGGAAGCCGCGGGCATCCT +
Preference number: 5 (lower is better)
Translates to: CLCLLPLAHRHDPMFFLFPKTEW*GSRGHP
Trigger: AGGATGCCCGCGGCTTCCCAACCATTCTGTCTTTGG...GAACAAGAAAAACATAGGGTCATGCCTATGGGCCAGGGGCAGCAGACAGAGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CAA 90 bp TGCCTTGAGCACAGTGTTCCCCATCATGGTCAGGAAAAGGAAATAACCAAAGCCCCAGTGGGCGTGGTTTaGCAGCCAGGCATTGGGACT +
Preference number: 5 (lower is better)
Translates to: CLEHSVPHHGQEKEITKAPVGVV*QPGIGT
Trigger: AGTCCCAATGCCTGGCTGCAAAACCACGCCCACTGG...GGCTTTGGTTATTTCCTTTTCCTGACCATGATGGGGAACACTGTGCTCAAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CAA 90 bp TGTCTCTGTCTGCTGCCCCTGGCCCATAGGCATGACCCTATGTTTTTCTTGTTCCGGGCATCCTTCATCTaGTTTTCCAGAGGCAGGACC +
Preference number: 5 (lower is better)
Translates to: CLCLLPLAHRHDPMFFLFRASFI*FSRGRT
Trigger: GGTCCTGCCTCTGGAAAACAAGATGAAGGATGCCCG...GAACAAGAAAAACATAGGGTCATGCCTATGGGCCAGGGGCAGCAGACAGAGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CAA 90 bp TGTCTCTGTCTGCTGCCCCTGGCCCATAGGCATGACCCTATGTTTTTCTTGTTCTGCCCTTGGTCTTCTTaGATGACTCTGAAGAGCTCC +
Preference number: 5 (lower is better)
Translates to: CLCLLPLAHRHDPMFFLFCPWSS*MTLKSS
Trigger: GGAGCTCTTCAGAGTCATCAAAGAAGACCAAGGGCA...GAACAAGAAAAACATAGGGTCATGCCTATGGGCCAGGGGCAGCAGACAGAGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CAA 90 bp TGTCTCTGTCTGCTGCCCCTGGCCCATAGGCATGACCCTATGTTTTTCTTGTTCAGAGTGATGCTGGCTTaGATGTCATCTCCAAACCGC +
Preference number: 5 (lower is better)
Translates to: CLCLLPLAHRHDPMFFLFRVMLA*MSSPNR
Trigger: GCGGTTTGGAGATGACATCAAAGCCAGCATCACTCT...GAACAAGAAAAACATAGGGTCATGCCTATGGGCCAGGGGCAGCAGACAGAGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CAA 90 bp TGCCTTGAGCACAGTGTTCCCCATCATGGTCAGGAAAAGGAAATAACCAAAGCCATAAACATGGTGGAGTaGGACAGGGCGGGAGAGTTC +
Preference number: 5 (lower is better)
Translates to: CLEHSVPHHGQEKEITKAINMVE*DRAGEF
Trigger: GAACTCTCCCGCCCTGTCCAACTCCACCATGTTTAT...GGCTTTGGTTATTTCCTTTTCCTGACCATGATGGGGAACACTGTGCTCAAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CAA 90 bp GTGAGGTCTCCACAGTGTGGAAAACTAGAGAACGACCAACATTTCTTTTGTTTTTTTTGCAGCCAGGCATaGGGACTGAAAGCCAGTCCG +
Preference number: 5 (lower is better)
Translates to: VRSPQCGKLENDQHFFCFFCSQA*GLKASP
Trigger: CGGACTGGCTTTCAGTCCCAATGCCTGGCTGCAAAA...AAAACAAAAGAAATGTTGGTCGTTCTCTAGTTTTCCACACTGTGGAGACCTCAC
47% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS-3UTR CAA 90 bp GTGAGGTCTCCACAGTGTGGAAAACTAGAGAACGACCAACATTTCTTTTGTTTTGCAGTGCCCAGCGTTTaGACACCTGAGAGACAGCAA +
Preference number: 5 (lower is better)
Translates to: VRSPQCGKLENDQHFFCFAVPSV*TPERQQ
Trigger: TTGCTGTCTCTCAGGTGTCAAAACGCTGGGCACTGC...AAAACAAAAGAAATGTTGGTCGTTCTCTAGTTTTCCACACTGTGGAGACCTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS GCA 72 bp AAGCTCACGACACGCCTCCCCCAGTGGGCGTGGTTTTaGAGCCAGGCATTGGGACTGAAAGCCAGTCCGTGC +
Preference number: 6 (lower is better)
Translates to: KLTTRLPQWAWF*SQALGLKASPC
Trigger: GCACGGACTGGCTTTCAGTCCCAATGCCTGGCTGCAAAACCACGCCCACTGGGGGAGGCGTGTCGTGAGCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CAA 72 bp GAAGCTCACGACACGCCTCCCCCAGTGGGCGTGGTTTaGCAGCCAGGCATTGGGACTGAAAGCCAGTCCGTG +
Preference number: 6 (lower is better)
Translates to: EAHDTPPPVGVV*QPGIGTESQSV
Trigger: CACGGACTGGCTTTCAGTCCCAATGCCTGGCTGCAAAACCACGCCCACTGGGGGAGGCGTGTCGTGAGCTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CCA 72 bp AGGAAGAAGCTCACGACACGCCTCCCCCAGTGGGCGTaGTTTTGCAGCCAGGCATTGGGACTGAAAGCCAGT +
Preference number: 6 (lower is better)
Translates to: RKKLTTRLPQWA*FCSQALGLKAS
Trigger: ACTGGCTTTCAGTCCCAATGCCTGGCTGCAAAACCACGCCCACTGGGGGAGGCGTGTCGTGAGCTTCTTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CAA 72 bp CTCTGCAGCTTCTTGGCACTCTCAGGAAGGTCCAGATaGAGAGGGGTGGCTACCTGCGGACTCCTGGCACTC +
Preference number: 6 (lower is better)
Translates to: LCSFLALSGRSR*RGVATCGLLAL
Trigger: GAGTGCCAGGAGTCCGCAGGTAGCCACCCCTCTCAATCTGGACCTTCCTGAGAGTGCCAAGAAGCTGCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CAA 90 bp GAAGAGCTCCCATTCGCTGGACTGGGATCCTGGCTCTGCAGCTTCTaGGCACTCTCAGGAAGGTCCAGATTGAGAGGGGTGGCTACCTGC +
Preference number: 6 (lower is better)
Translates to: EELPFAGLGSWLCSF*ALSGRSRLRGVATC
Trigger: GCAGGTAGCCACCCCTCTCAATCTGGACCTTCCTGAGAGTGCCAAGAAGCTGCAGAGCCAGGATCCCAGTCCAGCGAATGGGAGCTCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CAA 90 bp GATGAGGAAGAAGCTCACGACACGCCTCCCCCAGTGGGCGTGGTTTaGCAGCCAGGCATTGGGACTGAAAGCCAGTCCGTGCATCACTGT +
Preference number: 6 (lower is better)
Translates to: DEEEAHDTPPPVGVV*QPGIGTESQSVHHC
Trigger: ACAGTGATGCACGGACTGGCTTTCAGTCCCAATGCCTGGCTGCAAAACCACGCCCACTGGGGGAGGCGTGTCGTGAGCTTCTTCCTCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS TCA 72 bp TCTGCAGCTTCTTGGCACTCTCAGGAAGGTCCAGATTaGGAGGGGTGGCTACCTGCGGACTCCTGGCACTCT +
Preference number: 6 (lower is better)
Translates to: SAASWHSQEGPD*EGWLPADSWHS
Trigger: AGAGTGCCAGGAGTCCGCAGGTAGCCACCCCTCTCAATCTGGACCTTCCTGAGAGTGCCAAGAAGCTGCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CCA 72 bp ACGATGAGGAAGAAGCTCACGACACGCCTCCCCCAGTaGGCGTGGTTTTGCAGCCAGGCATTGGGACTGAAA +
Preference number: 6 (lower is better)
Translates to: TMRKKLTTRLPQ*AWFCSQALGLK
Trigger: TTTCAGTCCCAATGCCTGGCTGCAAAACCACGCCCACTGGGGGAGGCGTGTCGTGAGCTTCTTCCTCATCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CCA 72 bp AAGCGCTGGGCACATCTGACTAGGATGTGCATACAGTaGCAGGCGATGAGGCCCATTACCAGCAAGCTGAGT +
Preference number: 6 (lower is better)
Translates to: KRWAHLTRMCIQ*QAMRPITSKLS
Trigger: ACTCAGCTTGCTGGTAATGGGCCTCATCGCCTGCCACTGTATGCACATCCTAGTCAGATGTGCCCAGCGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CCA 72 bp TCTTTGATGACTCTGAAGAGCTCCCATTCGCTGGACTaGGATCCTGGCTCTGCAGCTTCTTGGCACTCTCAG +
Preference number: 6 (lower is better)
Translates to: SLMTLKSSHSLD*DPGSAASWHSQ
Trigger: CTGAGAGTGCCAAGAAGCTGCAGAGCCAGGATCCCAGTCCAGCGAATGGGAGCTCTTCAGAGTCATCAAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CAA 72 bp GACAGAATGGTTGGGAAGCCGCGGGCATCCTTCATCTaGTTTTCCAGAGGCAGGACCACACCGATGCTTTCA +
Preference number: 6 (lower is better)
Translates to: DRMVGKPRASFI*FSRGRTTPMLS
Trigger: TGAAAGCATCGGTGTGGTCCTGCCTCTGGAAAACAAGATGAAGGATGCCCGCGGCTTCCCAACCATTCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CAA 72 bp CCAATGTCTGGAACCCGGTTATGCCCTTGGTCTTCTTaGATGACTCTGAAGAGCTCCCATTCGCTGGACTGG +
Preference number: 6 (lower is better)
Translates to: PMSGTRLCPWSS*MTLKSSHSLDW
Trigger: CCAGTCCAGCGAATGGGAGCTCTTCAGAGTCATCAAAGAAGACCAAGGGCATAACCGGGTTCCAGACATTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS TCA 72 bp GGTACACAGGATACCGACGACATACAGGAGCTTGACTaGTTGGTACAGCCAGCAGTTGGGCAGGTTAAGAGT +
Preference number: 6 (lower is better)
Translates to: GTQDTDDIQELD*LVQPAVGQVKS
Trigger: ACTCTTAACCTGCCCAACTGCTGGCTGTACCAATCAGTCAAGCTCCTGTATGTCGTCGGTATCCTGTGTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6
CDS CCA 72 bp CCAGATGAACCAATGTCTGGAACCCGGTTATGCCCTTaGTCTTCTTTGATGACTCTGAAGAGCTCCCATTCG +
Preference number: 6 (lower is better)
Translates to: PDEPMSGTRLCP*SSLMTLKSSHS
Trigger: CGAATGGGAGCTCTTCAGAGTCATCAAAGAAGACCAAGGGCATAACCGGGTTCCAGACATTGGTTCATCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039305.6